Multiple sequence alignment - TraesCS1D01G217700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G217700 chr1D 100.000 3226 0 0 1 3226 302928062 302924837 0.000000e+00 5958.0
1 TraesCS1D01G217700 chr1D 100.000 29 0 0 1 29 302928120 302928148 2.000000e-03 54.7
2 TraesCS1D01G217700 chr1A 92.270 2665 75 43 606 3226 380264563 380261986 0.000000e+00 3659.0
3 TraesCS1D01G217700 chr1B 94.616 1653 41 15 840 2480 409838610 409836994 0.000000e+00 2516.0
4 TraesCS1D01G217700 chr1B 91.026 702 36 13 2527 3217 409836984 409836299 0.000000e+00 922.0
5 TraesCS1D01G217700 chr1B 87.776 499 43 10 359 851 409846866 409846380 4.670000e-158 568.0
6 TraesCS1D01G217700 chr1B 83.448 290 26 11 592 881 409848143 409847876 1.920000e-62 250.0
7 TraesCS1D01G217700 chr1B 90.426 94 8 1 238 331 409848239 409848147 4.370000e-24 122.0
8 TraesCS1D01G217700 chr1B 98.413 63 1 0 2098 2160 626422365 626422427 9.460000e-21 111.0
9 TraesCS1D01G217700 chr1B 97.368 38 0 1 2055 2092 626422335 626422371 2.690000e-06 63.9
10 TraesCS1D01G217700 chr3D 94.205 604 8 1 1678 2281 231171949 231172525 0.000000e+00 896.0
11 TraesCS1D01G217700 chr3D 91.252 583 16 12 958 1534 231173062 231172509 0.000000e+00 761.0
12 TraesCS1D01G217700 chr3D 96.444 225 8 0 1510 1734 231171734 231171958 3.930000e-99 372.0
13 TraesCS1D01G217700 chr7D 92.909 550 39 0 1131 1680 501383156 501383705 0.000000e+00 800.0
14 TraesCS1D01G217700 chr7D 92.586 553 35 4 1131 1683 501384400 501384946 0.000000e+00 789.0
15 TraesCS1D01G217700 chr5B 91.068 459 30 9 2693 3149 169509006 169509455 7.650000e-171 610.0
16 TraesCS1D01G217700 chr7A 88.166 169 19 1 1490 1658 562904040 562904207 1.960000e-47 200.0
17 TraesCS1D01G217700 chr3B 96.226 106 3 1 2055 2160 23381753 23381649 4.280000e-39 172.0
18 TraesCS1D01G217700 chr7B 95.098 102 4 1 2055 2156 643391571 643391671 3.330000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G217700 chr1D 302924837 302928062 3225 True 5958.000000 5958 100.000000 1 3226 1 chr1D.!!$R1 3225
1 TraesCS1D01G217700 chr1A 380261986 380264563 2577 True 3659.000000 3659 92.270000 606 3226 1 chr1A.!!$R1 2620
2 TraesCS1D01G217700 chr1B 409836299 409838610 2311 True 1719.000000 2516 92.821000 840 3217 2 chr1B.!!$R1 2377
3 TraesCS1D01G217700 chr1B 409846380 409848239 1859 True 313.333333 568 87.216667 238 881 3 chr1B.!!$R2 643
4 TraesCS1D01G217700 chr3D 231172509 231173062 553 True 761.000000 761 91.252000 958 1534 1 chr3D.!!$R1 576
5 TraesCS1D01G217700 chr3D 231171734 231172525 791 False 634.000000 896 95.324500 1510 2281 2 chr3D.!!$F1 771
6 TraesCS1D01G217700 chr7D 501383156 501384946 1790 False 794.500000 800 92.747500 1131 1683 2 chr7D.!!$F1 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.103208 GTCGAGATGACCGGCTGATT 59.897 55.0 0.0 0.0 42.04 2.57 F
1061 2322 0.101040 CCGAGAGCAGAGCAGAGAAG 59.899 60.0 0.0 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1071 2348 4.403752 TGTGGAAGACATCGATCAATCTCT 59.596 41.667 0.00 0.0 0.0 3.10 R
2840 5449 0.174389 CCATGTGCACTCTCTACGCT 59.826 55.000 19.41 0.0 0.0 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.513897 GGGGGTGAAATCGAGGCG 60.514 66.667 0.00 0.00 0.00 5.52
18 19 2.267961 GGGGTGAAATCGAGGCGT 59.732 61.111 0.00 0.00 0.00 5.68
19 20 1.814169 GGGGTGAAATCGAGGCGTC 60.814 63.158 0.00 0.00 0.00 5.19
20 21 1.218316 GGGTGAAATCGAGGCGTCT 59.782 57.895 4.69 0.00 0.00 4.18
21 22 0.806492 GGGTGAAATCGAGGCGTCTC 60.806 60.000 7.05 7.05 36.69 3.36
22 23 0.806492 GGTGAAATCGAGGCGTCTCC 60.806 60.000 12.25 0.00 36.70 3.71
31 32 2.998493 AGGCGTCTCCTCCATTTCT 58.002 52.632 0.00 0.00 43.20 2.52
32 33 2.160721 AGGCGTCTCCTCCATTTCTA 57.839 50.000 0.00 0.00 43.20 2.10
33 34 2.683768 AGGCGTCTCCTCCATTTCTAT 58.316 47.619 0.00 0.00 43.20 1.98
34 35 2.366916 AGGCGTCTCCTCCATTTCTATG 59.633 50.000 0.00 0.00 43.20 2.23
35 36 2.365617 GGCGTCTCCTCCATTTCTATGA 59.634 50.000 0.00 0.00 33.37 2.15
36 37 3.553922 GGCGTCTCCTCCATTTCTATGAG 60.554 52.174 0.00 0.00 33.37 2.90
37 38 3.068873 GCGTCTCCTCCATTTCTATGAGT 59.931 47.826 0.00 0.00 33.37 3.41
38 39 4.615949 CGTCTCCTCCATTTCTATGAGTG 58.384 47.826 0.00 0.00 33.37 3.51
39 40 4.500545 CGTCTCCTCCATTTCTATGAGTGG 60.501 50.000 0.00 0.00 33.37 4.00
40 41 3.389329 TCTCCTCCATTTCTATGAGTGGC 59.611 47.826 0.00 0.00 33.37 5.01
41 42 3.114606 TCCTCCATTTCTATGAGTGGCA 58.885 45.455 0.00 0.00 33.37 4.92
42 43 3.135348 TCCTCCATTTCTATGAGTGGCAG 59.865 47.826 0.00 0.00 33.37 4.85
43 44 3.118112 CCTCCATTTCTATGAGTGGCAGT 60.118 47.826 0.00 0.00 33.37 4.40
44 45 4.125703 CTCCATTTCTATGAGTGGCAGTC 58.874 47.826 15.47 15.47 33.37 3.51
45 46 2.868583 CCATTTCTATGAGTGGCAGTCG 59.131 50.000 17.03 3.79 33.37 4.18
46 47 3.430790 CCATTTCTATGAGTGGCAGTCGA 60.431 47.826 17.03 6.12 33.37 4.20
47 48 3.510388 TTTCTATGAGTGGCAGTCGAG 57.490 47.619 17.03 15.75 0.00 4.04
48 49 2.420058 TCTATGAGTGGCAGTCGAGA 57.580 50.000 18.00 18.00 0.00 4.04
49 50 2.937519 TCTATGAGTGGCAGTCGAGAT 58.062 47.619 18.00 9.80 0.00 2.75
50 51 2.620585 TCTATGAGTGGCAGTCGAGATG 59.379 50.000 18.00 7.97 0.00 2.90
51 52 1.478631 ATGAGTGGCAGTCGAGATGA 58.521 50.000 17.03 0.00 0.00 2.92
59 60 3.197614 GTCGAGATGACCGGCTGA 58.802 61.111 0.00 0.00 42.04 4.26
60 61 1.736586 GTCGAGATGACCGGCTGAT 59.263 57.895 0.00 0.00 42.04 2.90
61 62 0.103208 GTCGAGATGACCGGCTGATT 59.897 55.000 0.00 0.00 42.04 2.57
62 63 1.337071 GTCGAGATGACCGGCTGATTA 59.663 52.381 0.00 0.00 42.04 1.75
63 64 1.609072 TCGAGATGACCGGCTGATTAG 59.391 52.381 0.00 0.00 0.00 1.73
64 65 1.338337 CGAGATGACCGGCTGATTAGT 59.662 52.381 0.00 0.00 0.00 2.24
65 66 2.605823 CGAGATGACCGGCTGATTAGTC 60.606 54.545 0.00 0.00 0.00 2.59
66 67 2.625790 GAGATGACCGGCTGATTAGTCT 59.374 50.000 0.00 0.00 0.00 3.24
67 68 2.625790 AGATGACCGGCTGATTAGTCTC 59.374 50.000 0.00 0.00 0.00 3.36
68 69 1.847328 TGACCGGCTGATTAGTCTCA 58.153 50.000 0.00 0.00 0.00 3.27
69 70 2.176045 TGACCGGCTGATTAGTCTCAA 58.824 47.619 0.00 0.00 0.00 3.02
70 71 2.766263 TGACCGGCTGATTAGTCTCAAT 59.234 45.455 0.00 0.00 0.00 2.57
71 72 3.181475 TGACCGGCTGATTAGTCTCAATC 60.181 47.826 0.00 0.00 35.80 2.67
72 73 2.223829 ACCGGCTGATTAGTCTCAATCG 60.224 50.000 0.00 0.00 37.68 3.34
73 74 1.789464 CGGCTGATTAGTCTCAATCGC 59.211 52.381 0.00 0.00 37.68 4.58
74 75 2.799562 CGGCTGATTAGTCTCAATCGCA 60.800 50.000 0.00 0.00 37.68 5.10
75 76 2.799412 GGCTGATTAGTCTCAATCGCAG 59.201 50.000 11.67 0.00 37.68 5.18
76 77 2.220593 GCTGATTAGTCTCAATCGCAGC 59.779 50.000 0.00 0.00 37.68 5.25
77 78 3.715495 CTGATTAGTCTCAATCGCAGCT 58.285 45.455 0.00 0.00 37.68 4.24
78 79 4.794329 GCTGATTAGTCTCAATCGCAGCTA 60.794 45.833 0.00 0.00 37.68 3.32
79 80 4.611943 TGATTAGTCTCAATCGCAGCTAC 58.388 43.478 0.00 0.00 37.68 3.58
80 81 4.097892 TGATTAGTCTCAATCGCAGCTACA 59.902 41.667 0.00 0.00 37.68 2.74
81 82 2.575694 AGTCTCAATCGCAGCTACAG 57.424 50.000 0.00 0.00 0.00 2.74
82 83 0.926846 GTCTCAATCGCAGCTACAGC 59.073 55.000 0.00 0.00 42.49 4.40
93 94 3.046280 GCTACAGCGGACACTTACC 57.954 57.895 0.00 0.00 0.00 2.85
94 95 0.531200 GCTACAGCGGACACTTACCT 59.469 55.000 0.00 0.00 0.00 3.08
95 96 1.736032 GCTACAGCGGACACTTACCTG 60.736 57.143 0.00 0.00 0.00 4.00
96 97 1.544691 CTACAGCGGACACTTACCTGT 59.455 52.381 0.00 0.00 39.76 4.00
97 98 0.756903 ACAGCGGACACTTACCTGTT 59.243 50.000 0.00 0.00 33.29 3.16
98 99 1.148310 CAGCGGACACTTACCTGTTG 58.852 55.000 0.00 0.00 0.00 3.33
99 100 0.756903 AGCGGACACTTACCTGTTGT 59.243 50.000 0.00 0.00 0.00 3.32
100 101 1.140252 AGCGGACACTTACCTGTTGTT 59.860 47.619 0.00 0.00 0.00 2.83
101 102 1.263217 GCGGACACTTACCTGTTGTTG 59.737 52.381 0.00 0.00 0.00 3.33
102 103 1.871039 CGGACACTTACCTGTTGTTGG 59.129 52.381 0.00 0.00 0.00 3.77
103 104 2.743838 CGGACACTTACCTGTTGTTGGT 60.744 50.000 0.00 0.00 41.28 3.67
104 105 2.876550 GGACACTTACCTGTTGTTGGTC 59.123 50.000 0.00 0.00 38.88 4.02
105 106 3.537580 GACACTTACCTGTTGTTGGTCA 58.462 45.455 0.00 0.00 38.88 4.02
106 107 3.942748 GACACTTACCTGTTGTTGGTCAA 59.057 43.478 0.00 0.00 38.88 3.18
107 108 4.337145 ACACTTACCTGTTGTTGGTCAAA 58.663 39.130 0.00 0.00 38.88 2.69
108 109 4.953579 ACACTTACCTGTTGTTGGTCAAAT 59.046 37.500 0.00 0.00 38.88 2.32
109 110 5.420739 ACACTTACCTGTTGTTGGTCAAATT 59.579 36.000 0.00 0.00 38.88 1.82
110 111 6.603997 ACACTTACCTGTTGTTGGTCAAATTA 59.396 34.615 0.00 0.00 38.88 1.40
111 112 7.138736 CACTTACCTGTTGTTGGTCAAATTAG 58.861 38.462 0.00 0.00 38.88 1.73
112 113 6.264518 ACTTACCTGTTGTTGGTCAAATTAGG 59.735 38.462 0.00 0.00 38.88 2.69
113 114 3.895041 ACCTGTTGTTGGTCAAATTAGGG 59.105 43.478 0.00 0.00 37.79 3.53
114 115 3.258123 CCTGTTGTTGGTCAAATTAGGGG 59.742 47.826 0.00 0.00 37.81 4.79
115 116 2.630580 TGTTGTTGGTCAAATTAGGGGC 59.369 45.455 0.00 0.00 37.81 5.80
116 117 1.931635 TGTTGGTCAAATTAGGGGCC 58.068 50.000 0.00 0.00 0.00 5.80
117 118 1.148027 TGTTGGTCAAATTAGGGGCCA 59.852 47.619 4.39 0.00 0.00 5.36
118 119 1.824852 GTTGGTCAAATTAGGGGCCAG 59.175 52.381 4.39 0.00 0.00 4.85
119 120 1.377690 TGGTCAAATTAGGGGCCAGA 58.622 50.000 4.39 0.00 0.00 3.86
120 121 1.713647 TGGTCAAATTAGGGGCCAGAA 59.286 47.619 4.39 0.00 0.00 3.02
121 122 2.100197 GGTCAAATTAGGGGCCAGAAC 58.900 52.381 4.39 0.00 0.00 3.01
122 123 2.556559 GGTCAAATTAGGGGCCAGAACA 60.557 50.000 4.39 0.00 0.00 3.18
123 124 2.755103 GTCAAATTAGGGGCCAGAACAG 59.245 50.000 4.39 0.00 0.00 3.16
124 125 1.478105 CAAATTAGGGGCCAGAACAGC 59.522 52.381 4.39 0.00 0.00 4.40
150 151 4.385405 GAGCAGTGGCGCTGGAGT 62.385 66.667 27.70 2.03 44.01 3.85
151 152 3.890936 GAGCAGTGGCGCTGGAGTT 62.891 63.158 27.70 1.34 44.01 3.01
152 153 2.047274 GCAGTGGCGCTGGAGTTA 60.047 61.111 27.70 0.00 45.14 2.24
153 154 2.391389 GCAGTGGCGCTGGAGTTAC 61.391 63.158 27.70 7.70 45.14 2.50
154 155 1.741770 CAGTGGCGCTGGAGTTACC 60.742 63.158 20.17 0.00 41.42 2.85
162 163 4.341199 TGGAGTTACCAGGCCCAA 57.659 55.556 0.00 0.00 44.64 4.12
163 164 1.765074 TGGAGTTACCAGGCCCAAC 59.235 57.895 0.00 0.00 44.64 3.77
164 165 1.001269 GGAGTTACCAGGCCCAACC 60.001 63.158 0.00 0.00 38.79 3.77
165 166 1.376812 GAGTTACCAGGCCCAACCG 60.377 63.158 0.00 0.00 46.52 4.44
166 167 1.833787 GAGTTACCAGGCCCAACCGA 61.834 60.000 0.00 0.00 46.52 4.69
167 168 1.376812 GTTACCAGGCCCAACCGAG 60.377 63.158 0.00 0.00 46.52 4.63
168 169 1.536907 TTACCAGGCCCAACCGAGA 60.537 57.895 0.00 0.00 46.52 4.04
169 170 1.128809 TTACCAGGCCCAACCGAGAA 61.129 55.000 0.00 0.00 46.52 2.87
170 171 1.128809 TACCAGGCCCAACCGAGAAA 61.129 55.000 0.00 0.00 46.52 2.52
171 172 1.971695 CCAGGCCCAACCGAGAAAC 60.972 63.158 0.00 0.00 46.52 2.78
172 173 1.228124 CAGGCCCAACCGAGAAACA 60.228 57.895 0.00 0.00 46.52 2.83
173 174 0.821711 CAGGCCCAACCGAGAAACAA 60.822 55.000 0.00 0.00 46.52 2.83
174 175 0.112412 AGGCCCAACCGAGAAACAAT 59.888 50.000 0.00 0.00 46.52 2.71
175 176 0.526211 GGCCCAACCGAGAAACAATC 59.474 55.000 0.00 0.00 0.00 2.67
176 177 1.534729 GCCCAACCGAGAAACAATCT 58.465 50.000 0.00 0.00 42.61 2.40
186 187 4.935885 GAGAAACAATCTCGAGCAATGT 57.064 40.909 7.81 9.51 44.89 2.71
187 188 4.645956 GAGAAACAATCTCGAGCAATGTG 58.354 43.478 7.81 3.50 44.89 3.21
188 189 3.438087 AGAAACAATCTCGAGCAATGTGG 59.562 43.478 7.81 0.00 30.46 4.17
189 190 1.089920 ACAATCTCGAGCAATGTGGC 58.910 50.000 7.81 0.00 0.00 5.01
190 191 0.379669 CAATCTCGAGCAATGTGGCC 59.620 55.000 7.81 0.00 0.00 5.36
191 192 0.749454 AATCTCGAGCAATGTGGCCC 60.749 55.000 7.81 0.00 0.00 5.80
192 193 2.615227 ATCTCGAGCAATGTGGCCCC 62.615 60.000 7.81 0.00 0.00 5.80
193 194 3.626996 CTCGAGCAATGTGGCCCCA 62.627 63.158 0.00 0.00 0.00 4.96
194 195 2.440796 CGAGCAATGTGGCCCCAT 60.441 61.111 0.00 0.00 0.00 4.00
195 196 2.484062 CGAGCAATGTGGCCCCATC 61.484 63.158 0.00 0.00 0.00 3.51
196 197 1.076485 GAGCAATGTGGCCCCATCT 60.076 57.895 0.00 0.00 0.00 2.90
197 198 0.685458 GAGCAATGTGGCCCCATCTT 60.685 55.000 0.00 0.00 0.00 2.40
198 199 0.252375 AGCAATGTGGCCCCATCTTT 60.252 50.000 0.00 0.00 0.00 2.52
199 200 0.614812 GCAATGTGGCCCCATCTTTT 59.385 50.000 0.00 0.00 0.00 2.27
200 201 1.830477 GCAATGTGGCCCCATCTTTTA 59.170 47.619 0.00 0.00 0.00 1.52
201 202 2.159057 GCAATGTGGCCCCATCTTTTAG 60.159 50.000 0.00 0.00 0.00 1.85
202 203 3.364549 CAATGTGGCCCCATCTTTTAGA 58.635 45.455 0.00 0.00 0.00 2.10
203 204 2.806945 TGTGGCCCCATCTTTTAGAG 57.193 50.000 0.00 0.00 0.00 2.43
204 205 1.284785 TGTGGCCCCATCTTTTAGAGG 59.715 52.381 0.00 0.00 0.00 3.69
205 206 0.258774 TGGCCCCATCTTTTAGAGGC 59.741 55.000 0.00 0.00 33.67 4.70
206 207 0.468214 GGCCCCATCTTTTAGAGGCC 60.468 60.000 1.48 1.48 43.27 5.19
207 208 0.468214 GCCCCATCTTTTAGAGGCCC 60.468 60.000 0.00 0.00 29.60 5.80
208 209 1.226311 CCCCATCTTTTAGAGGCCCT 58.774 55.000 0.00 0.00 0.00 5.19
209 210 1.133668 CCCCATCTTTTAGAGGCCCTG 60.134 57.143 0.00 0.00 0.00 4.45
210 211 1.685148 CCATCTTTTAGAGGCCCTGC 58.315 55.000 0.00 0.00 0.00 4.85
211 212 1.064463 CCATCTTTTAGAGGCCCTGCA 60.064 52.381 0.00 0.00 0.00 4.41
212 213 2.019984 CATCTTTTAGAGGCCCTGCAC 58.980 52.381 0.00 0.00 0.00 4.57
213 214 1.362224 TCTTTTAGAGGCCCTGCACT 58.638 50.000 0.00 0.00 0.00 4.40
214 215 1.705186 TCTTTTAGAGGCCCTGCACTT 59.295 47.619 0.00 0.00 0.00 3.16
215 216 1.815003 CTTTTAGAGGCCCTGCACTTG 59.185 52.381 0.00 0.00 0.00 3.16
216 217 1.064003 TTTAGAGGCCCTGCACTTGA 58.936 50.000 0.00 0.00 0.00 3.02
217 218 1.289160 TTAGAGGCCCTGCACTTGAT 58.711 50.000 0.00 0.00 0.00 2.57
218 219 2.174685 TAGAGGCCCTGCACTTGATA 57.825 50.000 0.00 0.00 0.00 2.15
219 220 0.543749 AGAGGCCCTGCACTTGATAC 59.456 55.000 0.00 0.00 0.00 2.24
220 221 0.811616 GAGGCCCTGCACTTGATACG 60.812 60.000 0.00 0.00 0.00 3.06
221 222 1.220749 GGCCCTGCACTTGATACGA 59.779 57.895 0.00 0.00 0.00 3.43
222 223 0.179045 GGCCCTGCACTTGATACGAT 60.179 55.000 0.00 0.00 0.00 3.73
223 224 1.668419 GCCCTGCACTTGATACGATT 58.332 50.000 0.00 0.00 0.00 3.34
224 225 2.017049 GCCCTGCACTTGATACGATTT 58.983 47.619 0.00 0.00 0.00 2.17
225 226 2.223340 GCCCTGCACTTGATACGATTTG 60.223 50.000 0.00 0.00 0.00 2.32
226 227 3.009723 CCCTGCACTTGATACGATTTGT 58.990 45.455 0.00 0.00 0.00 2.83
227 228 3.181507 CCCTGCACTTGATACGATTTGTG 60.182 47.826 0.00 0.00 0.00 3.33
229 230 3.469899 GCACTTGATACGATTTGTGCA 57.530 42.857 10.44 0.00 46.64 4.57
230 231 3.820689 GCACTTGATACGATTTGTGCAA 58.179 40.909 10.44 0.00 46.64 4.08
231 232 3.848019 GCACTTGATACGATTTGTGCAAG 59.152 43.478 10.44 14.83 46.64 4.01
233 234 5.034554 ACTTGATACGATTTGTGCAAGTG 57.965 39.130 18.60 4.12 46.54 3.16
234 235 4.083324 ACTTGATACGATTTGTGCAAGTGG 60.083 41.667 18.60 3.64 46.54 4.00
235 236 2.746904 TGATACGATTTGTGCAAGTGGG 59.253 45.455 0.00 0.00 0.00 4.61
236 237 2.264005 TACGATTTGTGCAAGTGGGT 57.736 45.000 0.00 0.00 0.00 4.51
237 238 0.667993 ACGATTTGTGCAAGTGGGTG 59.332 50.000 0.00 0.00 0.00 4.61
238 239 0.667993 CGATTTGTGCAAGTGGGTGT 59.332 50.000 0.00 0.00 0.00 4.16
239 240 1.600164 CGATTTGTGCAAGTGGGTGTG 60.600 52.381 0.00 0.00 0.00 3.82
240 241 0.104671 ATTTGTGCAAGTGGGTGTGC 59.895 50.000 0.00 0.00 41.29 4.57
272 273 2.092646 TGGTGCAACTTACTCAACCAGT 60.093 45.455 2.04 0.00 36.55 4.00
283 284 7.054124 ACTTACTCAACCAGTCAATCTCAAAA 58.946 34.615 0.00 0.00 36.43 2.44
284 285 7.721399 ACTTACTCAACCAGTCAATCTCAAAAT 59.279 33.333 0.00 0.00 36.43 1.82
285 286 6.323203 ACTCAACCAGTCAATCTCAAAATG 57.677 37.500 0.00 0.00 0.00 2.32
291 292 9.311916 CAACCAGTCAATCTCAAAATGTTTTTA 57.688 29.630 0.00 0.00 0.00 1.52
292 293 9.533253 AACCAGTCAATCTCAAAATGTTTTTAG 57.467 29.630 0.00 0.00 0.00 1.85
293 294 7.653311 ACCAGTCAATCTCAAAATGTTTTTAGC 59.347 33.333 0.00 0.00 0.00 3.09
297 298 8.694394 GTCAATCTCAAAATGTTTTTAGCTGAC 58.306 33.333 0.00 12.97 32.89 3.51
333 334 9.847224 ATTAACTCCCATAAGTATGATTCGTTT 57.153 29.630 0.00 0.00 35.75 3.60
335 336 6.055588 ACTCCCATAAGTATGATTCGTTTGG 58.944 40.000 0.00 0.00 35.75 3.28
336 337 6.126883 ACTCCCATAAGTATGATTCGTTTGGA 60.127 38.462 0.00 0.00 35.75 3.53
341 1596 2.676342 AGTATGATTCGTTTGGAACCGC 59.324 45.455 0.00 0.00 37.50 5.68
348 1603 0.179174 CGTTTGGAACCGCAATAGCC 60.179 55.000 0.00 0.00 37.52 3.93
349 1604 0.179174 GTTTGGAACCGCAATAGCCG 60.179 55.000 0.00 0.00 37.52 5.52
351 1606 2.124860 GGAACCGCAATAGCCGGT 60.125 61.111 1.90 0.00 45.19 5.28
352 1607 2.469516 GGAACCGCAATAGCCGGTG 61.470 63.158 1.90 0.00 43.46 4.94
355 1610 1.303091 AACCGCAATAGCCGGTGAAC 61.303 55.000 1.90 0.00 43.46 3.18
356 1611 1.743623 CCGCAATAGCCGGTGAACA 60.744 57.895 1.90 0.00 37.52 3.18
359 1614 1.132262 CGCAATAGCCGGTGAACATTT 59.868 47.619 1.90 0.00 37.52 2.32
361 1616 2.479560 GCAATAGCCGGTGAACATTTCC 60.480 50.000 1.90 0.00 33.58 3.13
364 1619 0.609131 AGCCGGTGAACATTTCCTGG 60.609 55.000 1.90 0.00 32.65 4.45
366 1621 0.965363 CCGGTGAACATTTCCTGGGG 60.965 60.000 0.00 0.00 0.00 4.96
369 1624 1.616994 GGTGAACATTTCCTGGGGAGG 60.617 57.143 0.00 0.00 31.21 4.30
374 1629 0.468771 CATTTCCTGGGGAGGATGGC 60.469 60.000 0.00 0.00 37.87 4.40
375 1630 0.925720 ATTTCCTGGGGAGGATGGCA 60.926 55.000 0.00 0.00 37.87 4.92
379 1634 0.852842 CCTGGGGAGGATGGCATTTA 59.147 55.000 0.00 0.00 0.00 1.40
386 1641 2.277084 GAGGATGGCATTTACGAACGT 58.723 47.619 0.00 5.03 0.00 3.99
410 1665 5.789643 TTTTATGGCAAGCTCTTCAAACT 57.210 34.783 0.00 0.00 0.00 2.66
417 1672 3.562505 CAAGCTCTTCAAACTCACATGC 58.437 45.455 0.00 0.00 0.00 4.06
418 1673 3.137446 AGCTCTTCAAACTCACATGCT 57.863 42.857 0.00 0.00 0.00 3.79
427 1682 8.292448 TCTTCAAACTCACATGCTAATTTCTTC 58.708 33.333 0.00 0.00 0.00 2.87
439 1694 7.572523 TGCTAATTTCTTCAGGAATACATGG 57.427 36.000 0.00 0.00 33.53 3.66
446 1701 6.455360 TCTTCAGGAATACATGGCAAATTC 57.545 37.500 0.00 10.46 0.00 2.17
470 1725 4.326504 CAAAGAAGGGATTTTGCTGTGT 57.673 40.909 0.00 0.00 0.00 3.72
473 1728 5.453567 AAGAAGGGATTTTGCTGTGTAAC 57.546 39.130 0.00 0.00 37.35 2.50
486 1741 1.202200 TGTGTAACTTGCCGTGTTTGC 60.202 47.619 0.00 0.00 38.04 3.68
499 1754 3.490526 CCGTGTTTGCTTGAAGAAATTGG 59.509 43.478 0.00 0.00 0.00 3.16
503 1758 4.512198 TGTTTGCTTGAAGAAATTGGCATG 59.488 37.500 0.00 0.00 0.00 4.06
504 1759 4.339872 TTGCTTGAAGAAATTGGCATGT 57.660 36.364 0.00 0.00 0.00 3.21
505 1760 4.339872 TGCTTGAAGAAATTGGCATGTT 57.660 36.364 0.00 0.00 0.00 2.71
506 1761 4.309099 TGCTTGAAGAAATTGGCATGTTC 58.691 39.130 0.00 0.00 0.00 3.18
507 1762 3.681417 GCTTGAAGAAATTGGCATGTTCC 59.319 43.478 0.00 0.00 0.00 3.62
508 1763 4.562143 GCTTGAAGAAATTGGCATGTTCCT 60.562 41.667 0.00 0.00 0.00 3.36
509 1764 4.524316 TGAAGAAATTGGCATGTTCCTG 57.476 40.909 6.96 0.00 0.00 3.86
524 1779 5.781210 TGTTCCTGCAACATAAAATGACA 57.219 34.783 0.00 0.00 40.29 3.58
525 1780 6.343716 TGTTCCTGCAACATAAAATGACAT 57.656 33.333 0.00 0.00 40.29 3.06
526 1781 6.157904 TGTTCCTGCAACATAAAATGACATG 58.842 36.000 0.00 0.00 40.29 3.21
527 1782 6.015603 TGTTCCTGCAACATAAAATGACATGA 60.016 34.615 0.00 0.00 40.29 3.07
548 1803 2.138596 AAAACAGTCGCAAATGCCAG 57.861 45.000 0.00 0.00 37.91 4.85
551 1806 2.034687 AGTCGCAAATGCCAGCCT 59.965 55.556 0.00 0.00 37.91 4.58
559 1815 1.551430 CAAATGCCAGCCTTCATTGGA 59.449 47.619 0.00 0.00 36.55 3.53
567 1823 0.168128 GCCTTCATTGGAACGTTCGG 59.832 55.000 21.34 15.49 0.00 4.30
586 1842 3.854286 GGTGAATAGCATTACCGTTCG 57.146 47.619 0.00 0.00 0.00 3.95
587 1843 2.033151 GGTGAATAGCATTACCGTTCGC 60.033 50.000 0.00 0.00 0.00 4.70
588 1844 2.864343 GTGAATAGCATTACCGTTCGCT 59.136 45.455 0.00 0.00 38.51 4.93
589 1845 3.308866 GTGAATAGCATTACCGTTCGCTT 59.691 43.478 0.00 0.00 35.93 4.68
591 1847 3.944422 ATAGCATTACCGTTCGCTTTG 57.056 42.857 0.00 0.00 35.93 2.77
630 1888 5.292589 CCAAGATTTTCCTAATGCAATGTGC 59.707 40.000 0.00 0.00 45.29 4.57
650 1908 3.241701 GCAAACACATAACCACCATTCG 58.758 45.455 0.00 0.00 0.00 3.34
655 1913 2.095213 CACATAACCACCATTCGTTCCG 59.905 50.000 0.00 0.00 0.00 4.30
686 1944 5.333416 CGACTCCAACTTTTCTTAAGCAGAC 60.333 44.000 0.00 0.00 0.00 3.51
721 1979 2.105134 TGAGCGGAGGGAAAACAAACTA 59.895 45.455 0.00 0.00 0.00 2.24
818 2076 3.490439 TGATGCTTCAGTGTTCCAGAA 57.510 42.857 0.00 0.00 0.00 3.02
819 2077 3.819368 TGATGCTTCAGTGTTCCAGAAA 58.181 40.909 0.00 0.00 0.00 2.52
820 2078 4.206375 TGATGCTTCAGTGTTCCAGAAAA 58.794 39.130 0.00 0.00 0.00 2.29
821 2079 4.276678 TGATGCTTCAGTGTTCCAGAAAAG 59.723 41.667 0.00 0.00 0.00 2.27
1061 2322 0.101040 CCGAGAGCAGAGCAGAGAAG 59.899 60.000 0.00 0.00 0.00 2.85
1062 2323 0.101040 CGAGAGCAGAGCAGAGAAGG 59.899 60.000 0.00 0.00 0.00 3.46
1063 2324 1.473258 GAGAGCAGAGCAGAGAAGGA 58.527 55.000 0.00 0.00 0.00 3.36
1071 2348 4.717877 CAGAGCAGAGAAGGAGATAGAGA 58.282 47.826 0.00 0.00 0.00 3.10
1106 2383 1.361668 CTTCCACATCAGTTCCGCCG 61.362 60.000 0.00 0.00 0.00 6.46
1107 2384 3.499737 CCACATCAGTTCCGCCGC 61.500 66.667 0.00 0.00 0.00 6.53
1108 2385 3.499737 CACATCAGTTCCGCCGCC 61.500 66.667 0.00 0.00 0.00 6.13
1194 2474 3.151022 GAGGAGGAGGTGGGAGCG 61.151 72.222 0.00 0.00 0.00 5.03
1195 2475 4.787280 AGGAGGAGGTGGGAGCGG 62.787 72.222 0.00 0.00 0.00 5.52
1862 4454 2.528818 CCAGGTGGTCCTCAAGCCA 61.529 63.158 0.00 0.00 43.07 4.75
2364 4962 4.146075 GCTGCCGCTCTCTCTGCT 62.146 66.667 0.00 0.00 0.00 4.24
2365 4963 2.104729 CTGCCGCTCTCTCTGCTC 59.895 66.667 0.00 0.00 0.00 4.26
2366 4964 3.754740 CTGCCGCTCTCTCTGCTCG 62.755 68.421 0.00 0.00 0.00 5.03
2412 5013 6.007485 ACCTTCTCTCTCTTGGTTTCTTTT 57.993 37.500 0.00 0.00 0.00 2.27
2480 5081 0.253327 GGGAAGGCTGAGGAATTCGT 59.747 55.000 0.00 0.00 0.00 3.85
2517 5118 3.391382 CGAACCTCCCCTCCGCTT 61.391 66.667 0.00 0.00 0.00 4.68
2518 5119 2.585153 GAACCTCCCCTCCGCTTC 59.415 66.667 0.00 0.00 0.00 3.86
2519 5120 3.009714 AACCTCCCCTCCGCTTCC 61.010 66.667 0.00 0.00 0.00 3.46
2520 5121 3.564347 AACCTCCCCTCCGCTTCCT 62.564 63.158 0.00 0.00 0.00 3.36
2521 5122 2.689034 CCTCCCCTCCGCTTCCTT 60.689 66.667 0.00 0.00 0.00 3.36
2522 5123 2.736826 CCTCCCCTCCGCTTCCTTC 61.737 68.421 0.00 0.00 0.00 3.46
2523 5124 2.687566 TCCCCTCCGCTTCCTTCC 60.688 66.667 0.00 0.00 0.00 3.46
2524 5125 2.689034 CCCCTCCGCTTCCTTCCT 60.689 66.667 0.00 0.00 0.00 3.36
2525 5126 2.301738 CCCCTCCGCTTCCTTCCTT 61.302 63.158 0.00 0.00 0.00 3.36
2526 5127 1.078143 CCCTCCGCTTCCTTCCTTG 60.078 63.158 0.00 0.00 0.00 3.61
2527 5128 1.553690 CCCTCCGCTTCCTTCCTTGA 61.554 60.000 0.00 0.00 0.00 3.02
2528 5129 0.324943 CCTCCGCTTCCTTCCTTGAA 59.675 55.000 0.00 0.00 0.00 2.69
2529 5130 1.271379 CCTCCGCTTCCTTCCTTGAAA 60.271 52.381 0.00 0.00 0.00 2.69
2530 5131 1.807142 CTCCGCTTCCTTCCTTGAAAC 59.193 52.381 0.00 0.00 0.00 2.78
2552 5153 5.488458 ACGAAACGAAACGAAACGAAAATA 58.512 33.333 0.00 0.00 0.00 1.40
2557 5158 3.590724 CGAAACGAAACGAAAATACCACG 59.409 43.478 0.00 0.00 0.00 4.94
2597 5198 7.510001 TCAGCTAGTGTACTACTCCTACTCTAT 59.490 40.741 0.00 0.00 40.89 1.98
2631 5240 7.446931 TGCATTTTGATTTGAGTTGTACTCCTA 59.553 33.333 4.52 0.00 44.44 2.94
2638 5247 7.618117 TGATTTGAGTTGTACTCCTATACTGGA 59.382 37.037 4.52 0.00 44.44 3.86
2684 5293 1.973281 ACTGTGGATTGCAAGGCCG 60.973 57.895 4.94 0.00 0.00 6.13
2687 5296 2.117206 TGGATTGCAAGGCCGGTT 59.883 55.556 4.94 0.00 0.00 4.44
2698 5307 3.357079 GCCGGTTCAGTGCAGTGG 61.357 66.667 21.21 6.09 0.00 4.00
2751 5360 2.024319 GTGCCACAGTGCGAGACTC 61.024 63.158 0.00 0.00 29.75 3.36
2757 5366 1.006922 CAGTGCGAGACTCTGTGCA 60.007 57.895 0.03 0.00 35.57 4.57
2840 5449 6.183360 GCAAAGAAAGCATTTGTTGTGTGTAA 60.183 34.615 0.96 0.00 41.03 2.41
2863 5472 1.137872 GTAGAGAGTGCACATGGAGGG 59.862 57.143 21.04 0.00 0.00 4.30
2865 5474 2.262774 GAGAGTGCACATGGAGGGGG 62.263 65.000 21.04 0.00 0.00 5.40
3006 5621 6.039047 CCATTTGGACAAGTAATCATCTCCTG 59.961 42.308 0.00 0.00 37.39 3.86
3165 5788 5.650266 TGGAGAAACTTTGCTTTGACTGTAA 59.350 36.000 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.814169 GACGCCTCGATTTCACCCC 60.814 63.158 0.00 0.00 0.00 4.95
3 4 0.806492 GGAGACGCCTCGATTTCACC 60.806 60.000 0.00 0.00 40.33 4.02
4 5 0.173708 AGGAGACGCCTCGATTTCAC 59.826 55.000 0.00 0.00 46.97 3.18
5 6 2.579878 AGGAGACGCCTCGATTTCA 58.420 52.632 0.00 0.00 46.97 2.69
15 16 3.068873 ACTCATAGAAATGGAGGAGACGC 59.931 47.826 0.00 0.00 33.61 5.19
16 17 4.500545 CCACTCATAGAAATGGAGGAGACG 60.501 50.000 0.00 0.00 33.80 4.18
17 18 4.742138 GCCACTCATAGAAATGGAGGAGAC 60.742 50.000 0.00 0.00 33.80 3.36
18 19 3.389329 GCCACTCATAGAAATGGAGGAGA 59.611 47.826 0.00 0.00 33.80 3.71
19 20 3.135348 TGCCACTCATAGAAATGGAGGAG 59.865 47.826 0.00 0.00 33.80 3.69
20 21 3.114606 TGCCACTCATAGAAATGGAGGA 58.885 45.455 0.00 0.00 33.80 3.71
21 22 3.118112 ACTGCCACTCATAGAAATGGAGG 60.118 47.826 0.00 0.00 33.80 4.30
22 23 4.125703 GACTGCCACTCATAGAAATGGAG 58.874 47.826 0.00 0.00 33.80 3.86
23 24 3.430790 CGACTGCCACTCATAGAAATGGA 60.431 47.826 0.00 0.00 33.80 3.41
24 25 2.868583 CGACTGCCACTCATAGAAATGG 59.131 50.000 0.00 0.00 33.61 3.16
25 26 3.785486 TCGACTGCCACTCATAGAAATG 58.215 45.455 0.00 0.00 0.00 2.32
26 27 3.701542 TCTCGACTGCCACTCATAGAAAT 59.298 43.478 0.00 0.00 0.00 2.17
27 28 3.089284 TCTCGACTGCCACTCATAGAAA 58.911 45.455 0.00 0.00 0.00 2.52
28 29 2.723273 TCTCGACTGCCACTCATAGAA 58.277 47.619 0.00 0.00 0.00 2.10
29 30 2.420058 TCTCGACTGCCACTCATAGA 57.580 50.000 0.00 0.00 0.00 1.98
30 31 2.620585 TCATCTCGACTGCCACTCATAG 59.379 50.000 0.00 0.00 0.00 2.23
31 32 2.359214 GTCATCTCGACTGCCACTCATA 59.641 50.000 0.00 0.00 41.81 2.15
32 33 1.135915 GTCATCTCGACTGCCACTCAT 59.864 52.381 0.00 0.00 41.81 2.90
33 34 0.528017 GTCATCTCGACTGCCACTCA 59.472 55.000 0.00 0.00 41.81 3.41
34 35 0.179124 GGTCATCTCGACTGCCACTC 60.179 60.000 0.00 0.00 44.70 3.51
35 36 1.893786 GGTCATCTCGACTGCCACT 59.106 57.895 0.00 0.00 44.70 4.00
36 37 1.517257 CGGTCATCTCGACTGCCAC 60.517 63.158 0.00 0.00 43.96 5.01
37 38 2.885113 CGGTCATCTCGACTGCCA 59.115 61.111 0.00 0.00 43.96 4.92
41 42 0.753479 ATCAGCCGGTCATCTCGACT 60.753 55.000 1.90 0.00 44.70 4.18
42 43 0.103208 AATCAGCCGGTCATCTCGAC 59.897 55.000 1.90 0.00 44.57 4.20
43 44 1.609072 CTAATCAGCCGGTCATCTCGA 59.391 52.381 1.90 0.00 0.00 4.04
44 45 1.338337 ACTAATCAGCCGGTCATCTCG 59.662 52.381 1.90 0.00 0.00 4.04
45 46 2.625790 AGACTAATCAGCCGGTCATCTC 59.374 50.000 1.90 0.00 0.00 2.75
46 47 2.625790 GAGACTAATCAGCCGGTCATCT 59.374 50.000 1.90 0.00 0.00 2.90
47 48 2.362397 TGAGACTAATCAGCCGGTCATC 59.638 50.000 1.90 0.00 0.00 2.92
48 49 2.388735 TGAGACTAATCAGCCGGTCAT 58.611 47.619 1.90 0.00 0.00 3.06
49 50 1.847328 TGAGACTAATCAGCCGGTCA 58.153 50.000 1.90 0.00 0.00 4.02
50 51 2.961526 TTGAGACTAATCAGCCGGTC 57.038 50.000 1.90 0.00 0.00 4.79
51 52 2.223829 CGATTGAGACTAATCAGCCGGT 60.224 50.000 1.90 0.00 36.99 5.28
52 53 2.398498 CGATTGAGACTAATCAGCCGG 58.602 52.381 0.00 0.00 36.99 6.13
53 54 1.789464 GCGATTGAGACTAATCAGCCG 59.211 52.381 0.00 0.00 36.99 5.52
54 55 2.799412 CTGCGATTGAGACTAATCAGCC 59.201 50.000 0.00 0.00 36.99 4.85
55 56 2.220593 GCTGCGATTGAGACTAATCAGC 59.779 50.000 0.00 0.00 36.99 4.26
56 57 3.715495 AGCTGCGATTGAGACTAATCAG 58.285 45.455 0.00 0.00 36.99 2.90
57 58 3.808466 AGCTGCGATTGAGACTAATCA 57.192 42.857 0.00 0.00 36.99 2.57
58 59 4.611943 TGTAGCTGCGATTGAGACTAATC 58.388 43.478 0.00 0.00 34.48 1.75
59 60 4.615949 CTGTAGCTGCGATTGAGACTAAT 58.384 43.478 0.00 0.00 0.00 1.73
60 61 3.735208 GCTGTAGCTGCGATTGAGACTAA 60.735 47.826 0.00 0.00 38.21 2.24
61 62 2.223595 GCTGTAGCTGCGATTGAGACTA 60.224 50.000 0.00 0.00 38.21 2.59
62 63 1.470632 GCTGTAGCTGCGATTGAGACT 60.471 52.381 0.00 0.00 38.21 3.24
63 64 0.926846 GCTGTAGCTGCGATTGAGAC 59.073 55.000 0.00 0.00 38.21 3.36
64 65 3.352447 GCTGTAGCTGCGATTGAGA 57.648 52.632 0.00 0.00 38.21 3.27
72 73 0.108804 TAAGTGTCCGCTGTAGCTGC 60.109 55.000 0.00 0.00 39.32 5.25
73 74 1.630148 GTAAGTGTCCGCTGTAGCTG 58.370 55.000 0.00 0.00 39.32 4.24
74 75 0.531200 GGTAAGTGTCCGCTGTAGCT 59.469 55.000 2.04 0.00 39.32 3.32
75 76 0.531200 AGGTAAGTGTCCGCTGTAGC 59.469 55.000 0.00 0.00 37.78 3.58
76 77 1.544691 ACAGGTAAGTGTCCGCTGTAG 59.455 52.381 0.00 0.00 0.00 2.74
77 78 1.624336 ACAGGTAAGTGTCCGCTGTA 58.376 50.000 0.00 0.00 0.00 2.74
78 79 0.756903 AACAGGTAAGTGTCCGCTGT 59.243 50.000 0.00 0.00 0.00 4.40
79 80 1.148310 CAACAGGTAAGTGTCCGCTG 58.852 55.000 0.00 0.00 0.00 5.18
80 81 0.756903 ACAACAGGTAAGTGTCCGCT 59.243 50.000 0.00 0.00 0.00 5.52
81 82 1.263217 CAACAACAGGTAAGTGTCCGC 59.737 52.381 0.00 0.00 0.00 5.54
82 83 1.871039 CCAACAACAGGTAAGTGTCCG 59.129 52.381 0.00 0.00 0.00 4.79
83 84 2.876550 GACCAACAACAGGTAAGTGTCC 59.123 50.000 0.00 0.00 40.09 4.02
84 85 3.537580 TGACCAACAACAGGTAAGTGTC 58.462 45.455 0.00 0.00 40.09 3.67
85 86 3.637911 TGACCAACAACAGGTAAGTGT 57.362 42.857 0.00 0.00 40.09 3.55
86 87 4.974368 TTTGACCAACAACAGGTAAGTG 57.026 40.909 0.00 0.00 40.09 3.16
87 88 6.264518 CCTAATTTGACCAACAACAGGTAAGT 59.735 38.462 0.00 0.00 40.09 2.24
88 89 6.294508 CCCTAATTTGACCAACAACAGGTAAG 60.295 42.308 0.00 0.00 40.09 2.34
89 90 5.536916 CCCTAATTTGACCAACAACAGGTAA 59.463 40.000 0.00 0.00 40.09 2.85
90 91 5.074115 CCCTAATTTGACCAACAACAGGTA 58.926 41.667 0.00 0.00 40.09 3.08
91 92 3.895041 CCCTAATTTGACCAACAACAGGT 59.105 43.478 0.00 0.00 43.46 4.00
92 93 3.258123 CCCCTAATTTGACCAACAACAGG 59.742 47.826 0.00 0.00 38.29 4.00
93 94 3.306019 GCCCCTAATTTGACCAACAACAG 60.306 47.826 0.00 0.00 38.29 3.16
94 95 2.630580 GCCCCTAATTTGACCAACAACA 59.369 45.455 0.00 0.00 38.29 3.33
95 96 2.028476 GGCCCCTAATTTGACCAACAAC 60.028 50.000 0.00 0.00 38.29 3.32
96 97 2.252714 GGCCCCTAATTTGACCAACAA 58.747 47.619 0.00 0.00 36.65 2.83
97 98 1.148027 TGGCCCCTAATTTGACCAACA 59.852 47.619 0.00 0.00 0.00 3.33
98 99 1.824852 CTGGCCCCTAATTTGACCAAC 59.175 52.381 0.00 0.00 0.00 3.77
99 100 1.713647 TCTGGCCCCTAATTTGACCAA 59.286 47.619 0.00 0.00 0.00 3.67
100 101 1.377690 TCTGGCCCCTAATTTGACCA 58.622 50.000 0.00 0.00 0.00 4.02
101 102 2.100197 GTTCTGGCCCCTAATTTGACC 58.900 52.381 0.00 0.00 0.00 4.02
102 103 2.755103 CTGTTCTGGCCCCTAATTTGAC 59.245 50.000 0.00 0.00 0.00 3.18
103 104 2.883888 GCTGTTCTGGCCCCTAATTTGA 60.884 50.000 0.00 0.00 0.00 2.69
104 105 1.478105 GCTGTTCTGGCCCCTAATTTG 59.522 52.381 0.00 0.00 0.00 2.32
105 106 1.619704 GGCTGTTCTGGCCCCTAATTT 60.620 52.381 0.00 0.00 43.49 1.82
106 107 0.033109 GGCTGTTCTGGCCCCTAATT 60.033 55.000 0.00 0.00 43.49 1.40
107 108 1.615262 GGCTGTTCTGGCCCCTAAT 59.385 57.895 0.00 0.00 43.49 1.73
108 109 2.966732 CGGCTGTTCTGGCCCCTAA 61.967 63.158 0.00 0.00 46.24 2.69
109 110 3.399181 CGGCTGTTCTGGCCCCTA 61.399 66.667 0.00 0.00 46.24 3.53
133 134 2.507110 TAACTCCAGCGCCACTGCTC 62.507 60.000 2.29 0.00 45.23 4.26
135 136 2.047274 TAACTCCAGCGCCACTGC 60.047 61.111 2.29 0.00 45.78 4.40
136 137 1.741770 GGTAACTCCAGCGCCACTG 60.742 63.158 2.29 0.00 46.77 3.66
137 138 2.214216 TGGTAACTCCAGCGCCACT 61.214 57.895 2.29 0.00 41.93 4.00
138 139 2.345991 TGGTAACTCCAGCGCCAC 59.654 61.111 2.29 0.00 41.93 5.01
145 146 1.765074 GTTGGGCCTGGTAACTCCA 59.235 57.895 4.53 0.00 45.01 3.86
146 147 1.001269 GGTTGGGCCTGGTAACTCC 60.001 63.158 4.53 0.00 37.61 3.85
147 148 1.376812 CGGTTGGGCCTGGTAACTC 60.377 63.158 4.53 0.00 34.25 3.01
148 149 1.838073 CTCGGTTGGGCCTGGTAACT 61.838 60.000 4.53 0.00 34.25 2.24
149 150 1.376812 CTCGGTTGGGCCTGGTAAC 60.377 63.158 4.53 0.00 34.25 2.50
150 151 1.128809 TTCTCGGTTGGGCCTGGTAA 61.129 55.000 4.53 0.00 34.25 2.85
151 152 1.128809 TTTCTCGGTTGGGCCTGGTA 61.129 55.000 4.53 0.00 34.25 3.25
152 153 2.457323 TTTCTCGGTTGGGCCTGGT 61.457 57.895 4.53 0.00 34.25 4.00
153 154 1.971695 GTTTCTCGGTTGGGCCTGG 60.972 63.158 4.53 0.00 34.25 4.45
154 155 0.821711 TTGTTTCTCGGTTGGGCCTG 60.822 55.000 4.53 0.00 34.25 4.85
155 156 0.112412 ATTGTTTCTCGGTTGGGCCT 59.888 50.000 4.53 0.00 34.25 5.19
156 157 0.526211 GATTGTTTCTCGGTTGGGCC 59.474 55.000 0.00 0.00 0.00 5.80
157 158 1.468914 GAGATTGTTTCTCGGTTGGGC 59.531 52.381 0.00 0.00 41.51 5.36
165 166 4.436584 CCACATTGCTCGAGATTGTTTCTC 60.437 45.833 18.75 0.00 46.36 2.87
166 167 3.438087 CCACATTGCTCGAGATTGTTTCT 59.562 43.478 18.75 0.00 37.41 2.52
167 168 3.751621 CCACATTGCTCGAGATTGTTTC 58.248 45.455 18.75 0.00 0.00 2.78
168 169 2.095059 GCCACATTGCTCGAGATTGTTT 60.095 45.455 18.75 0.00 0.00 2.83
169 170 1.470098 GCCACATTGCTCGAGATTGTT 59.530 47.619 18.75 0.00 0.00 2.83
170 171 1.089920 GCCACATTGCTCGAGATTGT 58.910 50.000 18.75 12.74 0.00 2.71
171 172 0.379669 GGCCACATTGCTCGAGATTG 59.620 55.000 18.75 12.07 0.00 2.67
172 173 0.749454 GGGCCACATTGCTCGAGATT 60.749 55.000 18.75 0.00 0.00 2.40
173 174 1.153086 GGGCCACATTGCTCGAGAT 60.153 57.895 18.75 0.00 0.00 2.75
174 175 2.268920 GGGCCACATTGCTCGAGA 59.731 61.111 18.75 0.00 0.00 4.04
175 176 2.825836 GGGGCCACATTGCTCGAG 60.826 66.667 8.45 8.45 30.27 4.04
176 177 2.891941 GATGGGGCCACATTGCTCGA 62.892 60.000 24.50 0.00 30.27 4.04
177 178 2.440796 ATGGGGCCACATTGCTCG 60.441 61.111 17.02 0.00 30.27 5.03
178 179 0.685458 AAGATGGGGCCACATTGCTC 60.685 55.000 24.50 10.54 0.00 4.26
179 180 0.252375 AAAGATGGGGCCACATTGCT 60.252 50.000 24.50 13.18 0.00 3.91
180 181 0.614812 AAAAGATGGGGCCACATTGC 59.385 50.000 24.50 10.66 0.00 3.56
181 182 3.364549 TCTAAAAGATGGGGCCACATTG 58.635 45.455 24.50 8.64 0.00 2.82
182 183 3.628257 CCTCTAAAAGATGGGGCCACATT 60.628 47.826 24.50 9.69 0.00 2.71
183 184 2.091665 CCTCTAAAAGATGGGGCCACAT 60.092 50.000 23.86 23.86 0.00 3.21
184 185 1.284785 CCTCTAAAAGATGGGGCCACA 59.715 52.381 11.97 11.97 0.00 4.17
185 186 2.024306 GCCTCTAAAAGATGGGGCCAC 61.024 57.143 4.39 0.00 29.60 5.01
186 187 0.258774 GCCTCTAAAAGATGGGGCCA 59.741 55.000 4.39 0.00 29.60 5.36
187 188 0.468214 GGCCTCTAAAAGATGGGGCC 60.468 60.000 7.19 7.19 43.27 5.80
188 189 0.468214 GGGCCTCTAAAAGATGGGGC 60.468 60.000 0.84 0.00 35.30 5.80
189 190 1.133668 CAGGGCCTCTAAAAGATGGGG 60.134 57.143 0.95 0.00 0.00 4.96
190 191 1.752084 GCAGGGCCTCTAAAAGATGGG 60.752 57.143 0.95 0.00 0.00 4.00
191 192 1.064463 TGCAGGGCCTCTAAAAGATGG 60.064 52.381 0.95 0.00 0.00 3.51
192 193 2.019984 GTGCAGGGCCTCTAAAAGATG 58.980 52.381 0.95 0.00 0.00 2.90
193 194 1.918957 AGTGCAGGGCCTCTAAAAGAT 59.081 47.619 0.95 0.00 0.00 2.40
194 195 1.362224 AGTGCAGGGCCTCTAAAAGA 58.638 50.000 0.95 0.00 0.00 2.52
195 196 1.815003 CAAGTGCAGGGCCTCTAAAAG 59.185 52.381 0.95 0.00 0.00 2.27
196 197 1.423541 TCAAGTGCAGGGCCTCTAAAA 59.576 47.619 0.95 0.00 0.00 1.52
197 198 1.064003 TCAAGTGCAGGGCCTCTAAA 58.936 50.000 0.95 0.00 0.00 1.85
198 199 1.289160 ATCAAGTGCAGGGCCTCTAA 58.711 50.000 0.95 0.00 0.00 2.10
199 200 1.762957 GTATCAAGTGCAGGGCCTCTA 59.237 52.381 0.95 0.00 0.00 2.43
200 201 0.543749 GTATCAAGTGCAGGGCCTCT 59.456 55.000 0.95 0.00 0.00 3.69
201 202 0.811616 CGTATCAAGTGCAGGGCCTC 60.812 60.000 0.95 0.00 0.00 4.70
202 203 1.221840 CGTATCAAGTGCAGGGCCT 59.778 57.895 0.00 0.00 0.00 5.19
203 204 0.179045 ATCGTATCAAGTGCAGGGCC 60.179 55.000 0.00 0.00 0.00 5.80
204 205 1.668419 AATCGTATCAAGTGCAGGGC 58.332 50.000 0.00 0.00 0.00 5.19
205 206 3.009723 ACAAATCGTATCAAGTGCAGGG 58.990 45.455 0.00 0.00 0.00 4.45
206 207 4.007282 CACAAATCGTATCAAGTGCAGG 57.993 45.455 0.00 0.00 0.00 4.85
210 211 5.034554 ACTTGCACAAATCGTATCAAGTG 57.965 39.130 4.84 0.00 43.35 3.16
211 212 4.083324 CCACTTGCACAAATCGTATCAAGT 60.083 41.667 0.00 0.00 44.63 3.16
212 213 4.406069 CCACTTGCACAAATCGTATCAAG 58.594 43.478 0.00 0.00 40.48 3.02
213 214 3.190327 CCCACTTGCACAAATCGTATCAA 59.810 43.478 0.00 0.00 0.00 2.57
214 215 2.746904 CCCACTTGCACAAATCGTATCA 59.253 45.455 0.00 0.00 0.00 2.15
215 216 2.747446 ACCCACTTGCACAAATCGTATC 59.253 45.455 0.00 0.00 0.00 2.24
216 217 2.487762 CACCCACTTGCACAAATCGTAT 59.512 45.455 0.00 0.00 0.00 3.06
217 218 1.876799 CACCCACTTGCACAAATCGTA 59.123 47.619 0.00 0.00 0.00 3.43
218 219 0.667993 CACCCACTTGCACAAATCGT 59.332 50.000 0.00 0.00 0.00 3.73
219 220 0.667993 ACACCCACTTGCACAAATCG 59.332 50.000 0.00 0.00 0.00 3.34
220 221 1.869342 GCACACCCACTTGCACAAATC 60.869 52.381 0.00 0.00 38.68 2.17
221 222 0.104671 GCACACCCACTTGCACAAAT 59.895 50.000 0.00 0.00 38.68 2.32
222 223 1.253593 TGCACACCCACTTGCACAAA 61.254 50.000 0.00 0.00 43.79 2.83
223 224 1.680314 TGCACACCCACTTGCACAA 60.680 52.632 0.00 0.00 43.79 3.33
224 225 2.044551 TGCACACCCACTTGCACA 60.045 55.556 0.00 0.00 43.79 4.57
226 227 1.379710 ACTTGCACACCCACTTGCA 60.380 52.632 0.00 0.00 46.93 4.08
227 228 1.066257 CACTTGCACACCCACTTGC 59.934 57.895 0.00 0.00 39.33 4.01
228 229 0.101040 CACACTTGCACACCCACTTG 59.899 55.000 0.00 0.00 0.00 3.16
229 230 0.323360 ACACACTTGCACACCCACTT 60.323 50.000 0.00 0.00 0.00 3.16
230 231 0.323360 AACACACTTGCACACCCACT 60.323 50.000 0.00 0.00 0.00 4.00
231 232 0.530288 AAACACACTTGCACACCCAC 59.470 50.000 0.00 0.00 0.00 4.61
232 233 1.067283 CAAAACACACTTGCACACCCA 60.067 47.619 0.00 0.00 0.00 4.51
233 234 1.639280 CAAAACACACTTGCACACCC 58.361 50.000 0.00 0.00 0.00 4.61
234 235 1.067213 ACCAAAACACACTTGCACACC 60.067 47.619 0.00 0.00 0.00 4.16
235 236 1.991965 CACCAAAACACACTTGCACAC 59.008 47.619 0.00 0.00 0.00 3.82
236 237 1.671261 GCACCAAAACACACTTGCACA 60.671 47.619 0.00 0.00 0.00 4.57
237 238 0.998669 GCACCAAAACACACTTGCAC 59.001 50.000 0.00 0.00 0.00 4.57
238 239 0.605083 TGCACCAAAACACACTTGCA 59.395 45.000 0.00 0.00 37.63 4.08
239 240 1.393196 GTTGCACCAAAACACACTTGC 59.607 47.619 0.00 0.00 0.00 4.01
240 241 2.958213 AGTTGCACCAAAACACACTTG 58.042 42.857 0.00 0.00 0.00 3.16
241 242 3.676291 AAGTTGCACCAAAACACACTT 57.324 38.095 0.00 0.00 0.00 3.16
242 243 3.761752 AGTAAGTTGCACCAAAACACACT 59.238 39.130 0.00 0.00 0.00 3.55
272 273 7.867403 GGTCAGCTAAAAACATTTTGAGATTGA 59.133 33.333 5.74 5.65 31.44 2.57
291 292 6.998673 GGGAGTTAATTACATATTGGTCAGCT 59.001 38.462 0.00 0.00 0.00 4.24
292 293 6.770785 TGGGAGTTAATTACATATTGGTCAGC 59.229 38.462 0.00 0.00 0.00 4.26
293 294 8.924511 ATGGGAGTTAATTACATATTGGTCAG 57.075 34.615 0.00 0.00 0.00 3.51
310 311 6.542370 CCAAACGAATCATACTTATGGGAGTT 59.458 38.462 0.00 0.00 34.50 3.01
319 320 3.126343 GCGGTTCCAAACGAATCATACTT 59.874 43.478 0.00 0.00 30.17 2.24
321 322 2.417239 TGCGGTTCCAAACGAATCATAC 59.583 45.455 0.00 0.00 30.17 2.39
331 332 1.309499 CCGGCTATTGCGGTTCCAAA 61.309 55.000 6.02 0.00 40.82 3.28
333 334 2.124901 CCGGCTATTGCGGTTCCA 60.125 61.111 6.02 0.00 40.82 3.53
335 336 1.022451 TTCACCGGCTATTGCGGTTC 61.022 55.000 0.00 0.00 41.53 3.62
336 337 1.003112 TTCACCGGCTATTGCGGTT 60.003 52.632 0.00 0.00 41.53 4.44
341 1596 3.016736 AGGAAATGTTCACCGGCTATTG 58.983 45.455 0.00 0.00 0.00 1.90
348 1603 0.037590 TCCCCAGGAAATGTTCACCG 59.962 55.000 0.00 0.00 0.00 4.94
349 1604 1.616994 CCTCCCCAGGAAATGTTCACC 60.617 57.143 0.00 0.00 43.65 4.02
351 1606 1.753903 TCCTCCCCAGGAAATGTTCA 58.246 50.000 0.00 0.00 46.84 3.18
361 1616 1.815408 CGTAAATGCCATCCTCCCCAG 60.815 57.143 0.00 0.00 0.00 4.45
364 1619 1.947456 GTTCGTAAATGCCATCCTCCC 59.053 52.381 0.00 0.00 0.00 4.30
366 1621 2.277084 ACGTTCGTAAATGCCATCCTC 58.723 47.619 0.00 0.00 0.00 3.71
395 1650 3.562505 CATGTGAGTTTGAAGAGCTTGC 58.437 45.455 0.00 0.00 0.00 4.01
408 1663 5.809001 TCCTGAAGAAATTAGCATGTGAGT 58.191 37.500 0.00 0.00 0.00 3.41
410 1665 7.828717 TGTATTCCTGAAGAAATTAGCATGTGA 59.171 33.333 0.00 0.00 38.21 3.58
417 1672 7.572523 TGCCATGTATTCCTGAAGAAATTAG 57.427 36.000 0.00 0.00 38.21 1.73
418 1673 7.953005 TTGCCATGTATTCCTGAAGAAATTA 57.047 32.000 0.00 0.00 38.21 1.40
458 1713 2.979813 CGGCAAGTTACACAGCAAAATC 59.020 45.455 0.00 0.00 0.00 2.17
470 1725 2.017782 TCAAGCAAACACGGCAAGTTA 58.982 42.857 0.00 0.00 0.00 2.24
473 1728 1.065401 TCTTCAAGCAAACACGGCAAG 59.935 47.619 0.00 0.00 0.00 4.01
486 1741 4.927425 CAGGAACATGCCAATTTCTTCAAG 59.073 41.667 0.00 0.00 0.00 3.02
503 1758 6.389091 TCATGTCATTTTATGTTGCAGGAAC 58.611 36.000 0.00 0.00 34.84 3.62
504 1759 6.587206 TCATGTCATTTTATGTTGCAGGAA 57.413 33.333 0.00 0.00 0.00 3.36
505 1760 6.587206 TTCATGTCATTTTATGTTGCAGGA 57.413 33.333 0.00 0.00 0.00 3.86
506 1761 7.655236 TTTTCATGTCATTTTATGTTGCAGG 57.345 32.000 0.00 0.00 0.00 4.85
534 1789 1.589716 GAAGGCTGGCATTTGCGACT 61.590 55.000 3.38 0.00 43.26 4.18
535 1790 1.153958 GAAGGCTGGCATTTGCGAC 60.154 57.895 3.38 0.00 43.26 5.19
542 1797 1.188863 GTTCCAATGAAGGCTGGCAT 58.811 50.000 3.38 0.00 32.33 4.40
548 1803 0.168128 CCGAACGTTCCAATGAAGGC 59.832 55.000 22.07 0.00 39.42 4.35
551 1806 2.242047 TCACCGAACGTTCCAATGAA 57.758 45.000 22.07 6.07 0.00 2.57
559 1815 3.619929 GGTAATGCTATTCACCGAACGTT 59.380 43.478 0.00 0.00 0.00 3.99
567 1823 2.864343 AGCGAACGGTAATGCTATTCAC 59.136 45.455 0.00 0.00 35.56 3.18
585 1841 3.425193 GGCAAATGTTCTTACACAAAGCG 59.575 43.478 0.00 0.00 37.03 4.68
586 1842 4.367450 TGGCAAATGTTCTTACACAAAGC 58.633 39.130 0.00 0.00 37.03 3.51
587 1843 6.272318 TCTTGGCAAATGTTCTTACACAAAG 58.728 36.000 0.00 0.00 37.03 2.77
588 1844 6.214191 TCTTGGCAAATGTTCTTACACAAA 57.786 33.333 0.00 0.00 37.03 2.83
589 1845 5.843673 TCTTGGCAAATGTTCTTACACAA 57.156 34.783 0.00 0.00 37.03 3.33
591 1847 7.095649 GGAAAATCTTGGCAAATGTTCTTACAC 60.096 37.037 17.23 5.08 37.03 2.90
630 1888 4.497473 ACGAATGGTGGTTATGTGTTTG 57.503 40.909 0.00 0.00 0.00 2.93
655 1913 5.729974 AGAAAAGTTGGAGTCGTTTGTAC 57.270 39.130 0.00 0.00 0.00 2.90
686 1944 1.797046 CCGCTCATCATCATTCTTCCG 59.203 52.381 0.00 0.00 0.00 4.30
721 1979 1.507140 TGGATTAGTGGGCCTTCGAT 58.493 50.000 4.53 0.00 0.00 3.59
1061 2322 6.599244 ACATCGATCAATCTCTCTCTATCTCC 59.401 42.308 0.00 0.00 0.00 3.71
1062 2323 7.550551 AGACATCGATCAATCTCTCTCTATCTC 59.449 40.741 0.00 0.00 0.00 2.75
1063 2324 7.397221 AGACATCGATCAATCTCTCTCTATCT 58.603 38.462 0.00 0.00 0.00 1.98
1071 2348 4.403752 TGTGGAAGACATCGATCAATCTCT 59.596 41.667 0.00 0.00 0.00 3.10
2412 5013 1.256361 TGTAATCCGTACGGCACCCA 61.256 55.000 29.64 18.95 35.23 4.51
2480 5081 1.292223 CTCAAAGTCCCCGAGCGAA 59.708 57.895 0.00 0.00 0.00 4.70
2506 5107 2.687566 GGAAGGAAGCGGAGGGGA 60.688 66.667 0.00 0.00 0.00 4.81
2507 5108 2.301738 AAGGAAGGAAGCGGAGGGG 61.302 63.158 0.00 0.00 0.00 4.79
2508 5109 1.078143 CAAGGAAGGAAGCGGAGGG 60.078 63.158 0.00 0.00 0.00 4.30
2509 5110 0.324943 TTCAAGGAAGGAAGCGGAGG 59.675 55.000 0.00 0.00 0.00 4.30
2510 5111 1.807142 GTTTCAAGGAAGGAAGCGGAG 59.193 52.381 0.00 0.00 0.00 4.63
2511 5112 1.876416 CGTTTCAAGGAAGGAAGCGGA 60.876 52.381 0.00 0.00 42.68 5.54
2512 5113 0.517316 CGTTTCAAGGAAGGAAGCGG 59.483 55.000 0.00 0.00 42.68 5.52
2513 5114 1.508632 TCGTTTCAAGGAAGGAAGCG 58.491 50.000 5.26 5.26 46.08 4.68
2514 5115 3.629058 GTTTCGTTTCAAGGAAGGAAGC 58.371 45.455 0.00 0.00 35.57 3.86
2515 5116 3.558418 TCGTTTCGTTTCAAGGAAGGAAG 59.442 43.478 0.00 0.00 35.57 3.46
2516 5117 3.533547 TCGTTTCGTTTCAAGGAAGGAA 58.466 40.909 0.00 0.00 34.69 3.36
2517 5118 3.182341 TCGTTTCGTTTCAAGGAAGGA 57.818 42.857 0.00 0.00 34.69 3.36
2518 5119 3.955771 TTCGTTTCGTTTCAAGGAAGG 57.044 42.857 0.00 0.00 34.69 3.46
2519 5120 3.717404 CGTTTCGTTTCGTTTCAAGGAAG 59.283 43.478 0.00 0.00 34.69 3.46
2520 5121 3.370366 TCGTTTCGTTTCGTTTCAAGGAA 59.630 39.130 0.00 0.00 0.00 3.36
2521 5122 2.928757 TCGTTTCGTTTCGTTTCAAGGA 59.071 40.909 0.00 0.00 0.00 3.36
2522 5123 3.307339 TCGTTTCGTTTCGTTTCAAGG 57.693 42.857 0.00 0.00 0.00 3.61
2523 5124 4.314544 CGTTTCGTTTCGTTTCGTTTCAAG 60.315 41.667 0.00 0.00 0.00 3.02
2524 5125 3.533746 CGTTTCGTTTCGTTTCGTTTCAA 59.466 39.130 0.00 0.00 0.00 2.69
2525 5126 3.082860 CGTTTCGTTTCGTTTCGTTTCA 58.917 40.909 0.00 0.00 0.00 2.69
2526 5127 3.332873 TCGTTTCGTTTCGTTTCGTTTC 58.667 40.909 0.00 0.00 0.00 2.78
2527 5128 3.366808 TCGTTTCGTTTCGTTTCGTTT 57.633 38.095 0.00 0.00 0.00 3.60
2528 5129 3.366808 TTCGTTTCGTTTCGTTTCGTT 57.633 38.095 0.00 0.00 0.00 3.85
2529 5130 3.366808 TTTCGTTTCGTTTCGTTTCGT 57.633 38.095 0.00 0.00 0.00 3.85
2530 5131 4.899579 ATTTTCGTTTCGTTTCGTTTCG 57.100 36.364 0.00 0.00 0.00 3.46
2552 5153 0.182775 AAAGCTTGGGAAGACGTGGT 59.817 50.000 0.00 0.00 0.00 4.16
2578 5179 9.187455 GTACGTAATAGAGTAGGAGTAGTACAC 57.813 40.741 0.00 0.00 32.44 2.90
2579 5180 9.137459 AGTACGTAATAGAGTAGGAGTAGTACA 57.863 37.037 0.00 0.00 33.99 2.90
2582 5183 6.928492 GCAGTACGTAATAGAGTAGGAGTAGT 59.072 42.308 0.00 0.00 0.00 2.73
2597 5198 7.197071 ACTCAAATCAAAATGCAGTACGTAA 57.803 32.000 0.00 0.00 0.00 3.18
2638 5247 8.210265 ACCAATGGAATGAAAATTACAAACTGT 58.790 29.630 6.16 0.00 0.00 3.55
2684 5293 0.947244 CTTCACCACTGCACTGAACC 59.053 55.000 0.00 0.00 0.00 3.62
2687 5296 1.342496 CTCTCTTCACCACTGCACTGA 59.658 52.381 0.00 0.00 0.00 3.41
2698 5307 5.237048 AGAGCAAAATCACTCTCTCTTCAC 58.763 41.667 0.00 0.00 38.98 3.18
2751 5360 0.179148 TACCACGCTACGATGCACAG 60.179 55.000 0.00 0.00 0.00 3.66
2757 5366 1.466856 TTCCTGTACCACGCTACGAT 58.533 50.000 0.00 0.00 0.00 3.73
2840 5449 0.174389 CCATGTGCACTCTCTACGCT 59.826 55.000 19.41 0.00 0.00 5.07
2863 5472 2.107366 CCATATCCCAACAACAACCCC 58.893 52.381 0.00 0.00 0.00 4.95
2865 5474 2.495669 CACCCATATCCCAACAACAACC 59.504 50.000 0.00 0.00 0.00 3.77
2867 5476 2.175202 GCACCCATATCCCAACAACAA 58.825 47.619 0.00 0.00 0.00 2.83
2986 5601 3.776969 AGCAGGAGATGATTACTTGTCCA 59.223 43.478 0.00 0.00 36.52 4.02
3165 5788 1.056700 AGGTCAAGTCAGTGCAGGGT 61.057 55.000 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.