Multiple sequence alignment - TraesCS1D01G216500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G216500 chr1D 100.000 5055 0 0 1 5055 302348108 302353162 0.000000e+00 9335.0
1 TraesCS1D01G216500 chr1D 83.475 236 31 4 4657 4890 383170291 383170062 3.960000e-51 213.0
2 TraesCS1D01G216500 chr1D 76.504 349 51 15 4542 4865 487440412 487440754 1.460000e-35 161.0
3 TraesCS1D01G216500 chr1A 91.787 3263 160 30 1 3229 377001834 377005022 0.000000e+00 4442.0
4 TraesCS1D01G216500 chr1A 95.386 997 29 10 3228 4216 377005055 377006042 0.000000e+00 1570.0
5 TraesCS1D01G216500 chr1B 92.333 1813 70 22 1 1756 408621071 408619271 0.000000e+00 2514.0
6 TraesCS1D01G216500 chr1B 92.554 1249 64 14 3228 4474 408616579 408615358 0.000000e+00 1764.0
7 TraesCS1D01G216500 chr1B 93.844 601 17 6 2637 3225 408617213 408616621 0.000000e+00 887.0
8 TraesCS1D01G216500 chr1B 89.541 545 31 10 1866 2401 408619200 408618673 0.000000e+00 667.0
9 TraesCS1D01G216500 chr1B 86.456 539 55 9 4518 5055 408615358 408614837 4.390000e-160 575.0
10 TraesCS1D01G216500 chr1B 87.963 216 11 7 2385 2599 408618564 408618363 1.820000e-59 241.0
11 TraesCS1D01G216500 chr1B 75.991 429 66 22 4545 4944 678867056 678866636 2.400000e-43 187.0
12 TraesCS1D01G216500 chr1B 97.368 38 1 0 1831 1868 610356571 610356608 1.170000e-06 65.8
13 TraesCS1D01G216500 chr2A 76.420 581 90 33 4308 4865 169336959 169337515 2.320000e-68 270.0
14 TraesCS1D01G216500 chr2A 76.207 290 47 17 4543 4816 17682173 17682456 3.180000e-27 134.0
15 TraesCS1D01G216500 chr7D 76.289 582 92 26 4308 4865 403276650 403276091 8.340000e-68 268.0
16 TraesCS1D01G216500 chr7D 75.000 592 93 34 4309 4890 627404583 627404037 6.590000e-54 222.0
17 TraesCS1D01G216500 chr7D 74.168 511 81 25 4300 4788 8593001 8592520 1.130000e-36 165.0
18 TraesCS1D01G216500 chr7D 79.920 249 30 14 4308 4547 41870311 41870548 1.130000e-36 165.0
19 TraesCS1D01G216500 chr6D 74.838 616 114 30 4290 4895 136125922 136126506 1.820000e-59 241.0
20 TraesCS1D01G216500 chr6D 79.213 356 54 14 4543 4890 435435299 435434956 3.940000e-56 230.0
21 TraesCS1D01G216500 chr6D 83.036 224 32 3 4658 4878 341388624 341388404 1.110000e-46 198.0
22 TraesCS1D01G216500 chr6D 77.035 344 57 13 4543 4865 1432483 1432141 1.450000e-40 178.0
23 TraesCS1D01G216500 chr6D 76.696 339 54 18 4541 4865 293319288 293319615 1.130000e-36 165.0
24 TraesCS1D01G216500 chr3D 75.350 572 101 25 4309 4865 571698332 571697786 6.540000e-59 239.0
25 TraesCS1D01G216500 chr3D 85.714 77 7 1 1796 1868 86931662 86931586 1.510000e-10 78.7
26 TraesCS1D01G216500 chr2D 74.344 686 114 40 4299 4949 388057029 388057687 8.460000e-58 235.0
27 TraesCS1D01G216500 chr2D 78.090 356 56 15 4543 4890 591268551 591268892 6.630000e-49 206.0
28 TraesCS1D01G216500 chr2D 74.517 569 89 42 4308 4865 556955898 556955375 3.990000e-46 196.0
29 TraesCS1D01G216500 chr2D 80.247 243 36 10 4322 4561 82094390 82094157 6.730000e-39 172.0
30 TraesCS1D01G216500 chr2D 73.757 503 83 29 4308 4795 615577408 615577876 8.770000e-33 152.0
31 TraesCS1D01G216500 chr7B 79.494 356 52 16 4543 4890 14092572 14092914 3.040000e-57 233.0
32 TraesCS1D01G216500 chr7B 80.156 257 36 13 4310 4561 666419015 666418769 1.450000e-40 178.0
33 TraesCS1D01G216500 chr7B 75.000 372 64 16 4541 4889 454234707 454234342 1.470000e-30 145.0
34 TraesCS1D01G216500 chr7B 96.970 33 1 0 1831 1863 591873514 591873546 7.070000e-04 56.5
35 TraesCS1D01G216500 chr3A 74.310 580 101 26 4309 4865 636396850 636397404 8.580000e-48 202.0
36 TraesCS1D01G216500 chr3A 85.714 77 7 1 1796 1868 103613911 103613835 1.510000e-10 78.7
37 TraesCS1D01G216500 chr5A 82.511 223 37 1 4657 4877 7101297 7101519 1.440000e-45 195.0
38 TraesCS1D01G216500 chr2B 93.023 43 3 0 4888 4930 24210214 24210172 4.230000e-06 63.9
39 TraesCS1D01G216500 chr2B 96.970 33 1 0 1831 1863 730070907 730070939 7.070000e-04 56.5
40 TraesCS1D01G216500 chr3B 94.737 38 2 0 1831 1868 480340869 480340906 5.470000e-05 60.2
41 TraesCS1D01G216500 chr3B 96.970 33 1 0 1831 1863 263260993 263261025 7.070000e-04 56.5
42 TraesCS1D01G216500 chr3B 86.275 51 7 0 1831 1881 480340849 480340799 7.070000e-04 56.5
43 TraesCS1D01G216500 chr3B 90.476 42 4 0 1831 1872 536445411 536445370 7.070000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G216500 chr1D 302348108 302353162 5054 False 9335 9335 100.0000 1 5055 1 chr1D.!!$F1 5054
1 TraesCS1D01G216500 chr1A 377001834 377006042 4208 False 3006 4442 93.5865 1 4216 2 chr1A.!!$F1 4215
2 TraesCS1D01G216500 chr1B 408614837 408621071 6234 True 1108 2514 90.4485 1 5055 6 chr1B.!!$R2 5054
3 TraesCS1D01G216500 chr2A 169336959 169337515 556 False 270 270 76.4200 4308 4865 1 chr2A.!!$F2 557
4 TraesCS1D01G216500 chr7D 403276091 403276650 559 True 268 268 76.2890 4308 4865 1 chr7D.!!$R2 557
5 TraesCS1D01G216500 chr7D 627404037 627404583 546 True 222 222 75.0000 4309 4890 1 chr7D.!!$R3 581
6 TraesCS1D01G216500 chr6D 136125922 136126506 584 False 241 241 74.8380 4290 4895 1 chr6D.!!$F1 605
7 TraesCS1D01G216500 chr3D 571697786 571698332 546 True 239 239 75.3500 4309 4865 1 chr3D.!!$R2 556
8 TraesCS1D01G216500 chr2D 388057029 388057687 658 False 235 235 74.3440 4299 4949 1 chr2D.!!$F1 650
9 TraesCS1D01G216500 chr3A 636396850 636397404 554 False 202 202 74.3100 4309 4865 1 chr3A.!!$F1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
734 780 2.949451 ATTCTCTGCCTACAGTGTCG 57.051 50.000 0.0 0.0 44.77 4.35 F
2092 2196 0.673985 TTCAGACGTGGGTGAGTCAG 59.326 55.000 0.0 0.0 39.67 3.51 F
2664 4045 1.068055 CAGTGGATGTTTTGGCAGCTC 60.068 52.381 0.0 0.0 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2175 2292 0.673022 CACTGGCCAGAACTCTCTGC 60.673 60.0 39.19 0.0 46.76 4.26 R
3226 4619 0.402504 ACCAATGGCGGGTCTTAACA 59.597 50.0 0.00 0.0 31.49 2.41 R
4526 5975 0.108615 CTAGAAGCACCACCGGACAG 60.109 60.0 9.46 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 4.440880 CAGTCTTCAGAGATCCATTCCAC 58.559 47.826 0.00 0.00 33.70 4.02
381 385 4.771903 CCTTCCTTCTCTAAAGCCCTTAC 58.228 47.826 0.00 0.00 0.00 2.34
405 409 3.338249 TCAGGCTAAGCTTCATGTTCAC 58.662 45.455 0.00 0.00 0.00 3.18
424 428 5.814764 TCACTGCTTACTGCTACTACTAC 57.185 43.478 0.00 0.00 43.37 2.73
438 442 6.822676 TGCTACTACTACTACAGTTCTTCCTC 59.177 42.308 0.00 0.00 38.80 3.71
465 491 9.601810 ACCTTATTTTCCTTCTTGTAAAATCCT 57.398 29.630 0.00 0.00 35.20 3.24
514 540 9.626045 CACCATTTAAACCAAAATTAGTCTCTC 57.374 33.333 0.00 0.00 0.00 3.20
568 614 6.715344 TGATGTTTCGTACTTATTGTGGAC 57.285 37.500 0.00 0.00 0.00 4.02
569 615 6.460781 TGATGTTTCGTACTTATTGTGGACT 58.539 36.000 0.00 0.00 0.00 3.85
570 616 7.604549 TGATGTTTCGTACTTATTGTGGACTA 58.395 34.615 0.00 0.00 0.00 2.59
571 617 7.543172 TGATGTTTCGTACTTATTGTGGACTAC 59.457 37.037 0.00 0.00 0.00 2.73
572 618 6.985117 TGTTTCGTACTTATTGTGGACTACT 58.015 36.000 0.00 0.00 0.00 2.57
573 619 8.109705 TGTTTCGTACTTATTGTGGACTACTA 57.890 34.615 0.00 0.00 0.00 1.82
574 620 8.239314 TGTTTCGTACTTATTGTGGACTACTAG 58.761 37.037 0.00 0.00 0.00 2.57
575 621 6.932356 TCGTACTTATTGTGGACTACTAGG 57.068 41.667 0.00 0.00 0.00 3.02
576 622 5.297776 TCGTACTTATTGTGGACTACTAGGC 59.702 44.000 0.00 0.00 0.00 3.93
577 623 5.506982 CGTACTTATTGTGGACTACTAGGCC 60.507 48.000 0.14 0.14 46.38 5.19
612 658 3.838317 TCCAGTGTTAAGGTACTGCTCAT 59.162 43.478 8.29 0.00 42.21 2.90
734 780 2.949451 ATTCTCTGCCTACAGTGTCG 57.051 50.000 0.00 0.00 44.77 4.35
951 1000 6.566079 TTACTCCATCCTCATTGATCAACT 57.434 37.500 11.07 0.00 0.00 3.16
952 1001 7.675161 TTACTCCATCCTCATTGATCAACTA 57.325 36.000 11.07 0.60 0.00 2.24
981 1030 8.090788 TCTGCTAAATATTTAGGTGAAGTCCT 57.909 34.615 28.27 0.00 40.31 3.85
985 1034 9.788960 GCTAAATATTTAGGTGAAGTCCTTTTG 57.211 33.333 28.27 6.51 40.31 2.44
1112 1161 3.243737 TGCTTGCTTCGTACTCTTCTCAA 60.244 43.478 0.00 0.00 0.00 3.02
1113 1162 3.929610 GCTTGCTTCGTACTCTTCTCAAT 59.070 43.478 0.00 0.00 0.00 2.57
1114 1163 4.390297 GCTTGCTTCGTACTCTTCTCAATT 59.610 41.667 0.00 0.00 0.00 2.32
1115 1164 5.445275 GCTTGCTTCGTACTCTTCTCAATTC 60.445 44.000 0.00 0.00 0.00 2.17
1116 1165 5.392767 TGCTTCGTACTCTTCTCAATTCT 57.607 39.130 0.00 0.00 0.00 2.40
1117 1166 5.403246 TGCTTCGTACTCTTCTCAATTCTC 58.597 41.667 0.00 0.00 0.00 2.87
1118 1167 5.048013 TGCTTCGTACTCTTCTCAATTCTCA 60.048 40.000 0.00 0.00 0.00 3.27
1259 1308 4.471025 TGCATCTTAGGACAGGATTCAGAA 59.529 41.667 0.00 0.00 0.00 3.02
1356 1411 4.637534 TCAGCATGTTCTGATTTCTTAGCC 59.362 41.667 0.00 0.00 38.11 3.93
1412 1467 1.168407 GCAAGCAGGCAGAGAACACA 61.168 55.000 0.00 0.00 0.00 3.72
1617 1693 5.011533 CACCTCCCATTCCATTAAACAACAA 59.988 40.000 0.00 0.00 0.00 2.83
1629 1705 1.394618 AACAACAAAGGCGGCTAACA 58.605 45.000 13.71 0.00 0.00 2.41
1692 1774 3.327600 CTGGGACACAGTGCATTCA 57.672 52.632 0.00 0.00 42.42 2.57
1704 1786 4.081642 ACAGTGCATTCATACTACTCGGTT 60.082 41.667 0.00 0.00 0.00 4.44
1710 1792 2.549926 TCATACTACTCGGTTCGCGTA 58.450 47.619 5.77 0.00 0.00 4.42
1766 1850 6.399639 AAGATGTGTACCGGAAAAACAAAT 57.600 33.333 9.46 7.42 0.00 2.32
1767 1851 7.513371 AAGATGTGTACCGGAAAAACAAATA 57.487 32.000 9.46 0.00 0.00 1.40
1817 1901 1.894466 TCCGTCCGGAATTAACTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
1820 1904 3.119388 CCGTCCGGAATTAACTGTCACTA 60.119 47.826 5.23 0.00 37.50 2.74
1844 1928 3.396560 CTGAGTGCTCATTTCAGTGACA 58.603 45.455 2.06 0.00 39.13 3.58
1858 1942 3.000727 CAGTGACAGTTAATTCCGGACC 58.999 50.000 1.83 0.00 0.00 4.46
1904 2002 8.374327 TGCATTTCTCATGTGTAGATTATGAG 57.626 34.615 0.00 0.00 45.70 2.90
1962 2066 1.435256 ACCAAACAGTGCCTAGGAGT 58.565 50.000 14.75 1.54 0.00 3.85
1983 2087 3.639672 ATCAGCACAAGACCATCATGA 57.360 42.857 0.00 0.00 0.00 3.07
2011 2115 2.474856 CGAGACGAAGGAAGACGAAGAG 60.475 54.545 0.00 0.00 0.00 2.85
2048 2152 2.171079 GCGGTTCGAATCGATGGCA 61.171 57.895 33.43 0.00 35.23 4.92
2090 2194 1.546476 AGATTCAGACGTGGGTGAGTC 59.454 52.381 0.00 0.00 37.63 3.36
2092 2196 0.673985 TTCAGACGTGGGTGAGTCAG 59.326 55.000 0.00 0.00 39.67 3.51
2106 2210 4.270325 GGTGAGTCAGTGAGTTGTTGTTAC 59.730 45.833 1.05 0.00 0.00 2.50
2108 2212 5.523916 GTGAGTCAGTGAGTTGTTGTTACAT 59.476 40.000 1.05 0.00 33.44 2.29
2114 2218 9.221775 GTCAGTGAGTTGTTGTTACATTTTTAG 57.778 33.333 0.00 0.00 33.44 1.85
2152 2265 5.102953 TCTTCCCTGTGATGATCGATTTT 57.897 39.130 0.00 0.00 0.00 1.82
2153 2266 5.500234 TCTTCCCTGTGATGATCGATTTTT 58.500 37.500 0.00 0.00 0.00 1.94
2154 2267 6.649155 TCTTCCCTGTGATGATCGATTTTTA 58.351 36.000 0.00 0.00 0.00 1.52
2155 2268 7.109501 TCTTCCCTGTGATGATCGATTTTTAA 58.890 34.615 0.00 0.00 0.00 1.52
2156 2269 6.677781 TCCCTGTGATGATCGATTTTTAAC 57.322 37.500 0.00 0.00 0.00 2.01
2175 2292 9.825109 TTTTTAACCTTTTCTTGGTTTATCTGG 57.175 29.630 3.42 0.00 44.54 3.86
2252 2369 5.430417 TGAACCAGCCTATATGGGTAAGAAA 59.570 40.000 7.00 0.00 46.24 2.52
2253 2370 5.306114 ACCAGCCTATATGGGTAAGAAAC 57.694 43.478 7.00 0.00 46.24 2.78
2254 2371 4.975794 ACCAGCCTATATGGGTAAGAAACT 59.024 41.667 7.00 0.00 46.24 2.66
2255 2372 6.148186 ACCAGCCTATATGGGTAAGAAACTA 58.852 40.000 7.00 0.00 46.24 2.24
2256 2373 6.618196 ACCAGCCTATATGGGTAAGAAACTAA 59.382 38.462 7.00 0.00 46.24 2.24
2257 2374 7.162082 CCAGCCTATATGGGTAAGAAACTAAG 58.838 42.308 7.00 0.00 46.24 2.18
2258 2375 7.016268 CCAGCCTATATGGGTAAGAAACTAAGA 59.984 40.741 7.00 0.00 46.24 2.10
2259 2376 8.429641 CAGCCTATATGGGTAAGAAACTAAGAA 58.570 37.037 7.00 0.00 46.24 2.52
2289 2406 6.868339 AGCACAAGGAATTAATTAAGCACAAC 59.132 34.615 0.00 0.00 0.00 3.32
2436 2677 7.941795 TCTTTCTTACTTGTCGTTTTAGAGG 57.058 36.000 0.00 0.00 0.00 3.69
2586 2827 9.854668 ACTGAAGTGATACTGTGATAGTACTAT 57.145 33.333 15.37 15.37 44.30 2.12
2588 2829 9.847224 TGAAGTGATACTGTGATAGTACTATGA 57.153 33.333 20.13 9.16 44.30 2.15
2607 2848 8.907222 ACTATGAAAGTACTCCTACTACTAGC 57.093 38.462 0.00 0.00 36.36 3.42
2608 2849 8.492782 ACTATGAAAGTACTCCTACTACTAGCA 58.507 37.037 0.00 0.00 36.36 3.49
2609 2850 6.998968 TGAAAGTACTCCTACTACTAGCAC 57.001 41.667 0.00 0.00 32.46 4.40
2610 2851 6.479006 TGAAAGTACTCCTACTACTAGCACA 58.521 40.000 0.00 0.00 32.46 4.57
2664 4045 1.068055 CAGTGGATGTTTTGGCAGCTC 60.068 52.381 0.00 0.00 0.00 4.09
3201 4594 4.509230 AGCATGCAGTATTGACTATTGACG 59.491 41.667 21.98 0.00 33.32 4.35
3226 4619 4.060038 GCCGCCATTGCTGCAAGT 62.060 61.111 20.72 6.38 45.86 3.16
3860 5299 2.023601 GCGCGTTTTGTCGTGGTT 59.976 55.556 8.43 0.00 40.90 3.67
4057 5496 2.277969 CTCAAGCATGCGAAGTGATCT 58.722 47.619 13.01 0.00 0.00 2.75
4112 5552 5.633830 ATTTGTAGATTCTGCTTGGTGTG 57.366 39.130 3.38 0.00 0.00 3.82
4201 5641 8.955061 AAAATGACTAGATTTGTCGATTTGTG 57.045 30.769 0.00 0.00 37.26 3.33
4217 5657 6.481976 TCGATTTGTGTAGTTGAGATTTGTGT 59.518 34.615 0.00 0.00 0.00 3.72
4218 5658 6.574832 CGATTTGTGTAGTTGAGATTTGTGTG 59.425 38.462 0.00 0.00 0.00 3.82
4219 5659 5.749596 TTGTGTAGTTGAGATTTGTGTGG 57.250 39.130 0.00 0.00 0.00 4.17
4220 5660 4.133820 TGTGTAGTTGAGATTTGTGTGGG 58.866 43.478 0.00 0.00 0.00 4.61
4280 5720 2.651382 ATTTCCATTAGCCGTACCCC 57.349 50.000 0.00 0.00 0.00 4.95
4383 5827 4.680237 CAAGGCCGTGGAGACGCA 62.680 66.667 11.31 0.00 44.68 5.24
4384 5828 3.706373 AAGGCCGTGGAGACGCAT 61.706 61.111 0.00 0.00 44.68 4.73
4385 5829 3.958147 AAGGCCGTGGAGACGCATG 62.958 63.158 0.00 0.00 44.68 4.06
4423 5867 3.458163 CGGCGGAAGGGCTCTGTA 61.458 66.667 0.00 0.00 39.52 2.74
4467 5912 2.706723 TGTTAGGGTTTGTGTCCTGCTA 59.293 45.455 0.00 0.00 34.75 3.49
4482 5931 1.153349 GCTAGGAAAGGTGAGGCGG 60.153 63.158 0.00 0.00 0.00 6.13
4485 5934 2.758852 TAGGAAAGGTGAGGCGGGGT 62.759 60.000 0.00 0.00 0.00 4.95
4502 5951 0.179936 GGTGGCTCTCTGAAGATGGG 59.820 60.000 0.00 0.00 0.00 4.00
4505 5954 1.767088 TGGCTCTCTGAAGATGGGATG 59.233 52.381 0.00 0.00 0.00 3.51
4511 5960 5.455040 GCTCTCTGAAGATGGGATGAGATTT 60.455 44.000 0.00 0.00 31.41 2.17
4519 5968 1.697284 GGGATGAGATTTTCCCTGCC 58.303 55.000 0.63 0.00 46.91 4.85
4520 5969 1.216427 GGGATGAGATTTTCCCTGCCT 59.784 52.381 0.63 0.00 46.91 4.75
4521 5970 2.443255 GGGATGAGATTTTCCCTGCCTA 59.557 50.000 0.63 0.00 46.91 3.93
4522 5971 3.497584 GGGATGAGATTTTCCCTGCCTAG 60.498 52.174 0.63 0.00 46.91 3.02
4523 5972 2.717639 TGAGATTTTCCCTGCCTAGC 57.282 50.000 0.00 0.00 0.00 3.42
4524 5973 1.212935 TGAGATTTTCCCTGCCTAGCC 59.787 52.381 0.00 0.00 0.00 3.93
4525 5974 0.553333 AGATTTTCCCTGCCTAGCCC 59.447 55.000 0.00 0.00 0.00 5.19
4526 5975 0.468214 GATTTTCCCTGCCTAGCCCC 60.468 60.000 0.00 0.00 0.00 5.80
4527 5976 0.926220 ATTTTCCCTGCCTAGCCCCT 60.926 55.000 0.00 0.00 0.00 4.79
4528 5977 1.863155 TTTTCCCTGCCTAGCCCCTG 61.863 60.000 0.00 0.00 0.00 4.45
4529 5978 3.579451 TTCCCTGCCTAGCCCCTGT 62.579 63.158 0.00 0.00 0.00 4.00
4530 5979 3.483869 CCCTGCCTAGCCCCTGTC 61.484 72.222 0.00 0.00 0.00 3.51
4531 5980 3.483869 CCTGCCTAGCCCCTGTCC 61.484 72.222 0.00 0.00 0.00 4.02
4532 5981 3.854669 CTGCCTAGCCCCTGTCCG 61.855 72.222 0.00 0.00 0.00 4.79
4535 5984 3.470888 CCTAGCCCCTGTCCGGTG 61.471 72.222 0.00 0.00 0.00 4.94
4549 5998 2.660064 CGGTGGTGCTTCTAGCCCT 61.660 63.158 0.00 0.00 41.51 5.19
4610 6076 0.808847 GGTTTGTCTACGGCGGGATC 60.809 60.000 13.24 5.05 0.00 3.36
4627 6093 2.393764 GATCCAGTTGGCGTTTTGTTG 58.606 47.619 0.00 0.00 34.44 3.33
4631 6097 1.088306 AGTTGGCGTTTTGTTGTCGA 58.912 45.000 0.00 0.00 0.00 4.20
4632 6098 1.673920 AGTTGGCGTTTTGTTGTCGAT 59.326 42.857 0.00 0.00 0.00 3.59
4633 6099 1.778591 GTTGGCGTTTTGTTGTCGATG 59.221 47.619 0.00 0.00 0.00 3.84
4634 6100 0.309302 TGGCGTTTTGTTGTCGATGG 59.691 50.000 0.00 0.00 0.00 3.51
4635 6101 0.589223 GGCGTTTTGTTGTCGATGGA 59.411 50.000 0.00 0.00 0.00 3.41
4636 6102 1.199097 GGCGTTTTGTTGTCGATGGAT 59.801 47.619 0.00 0.00 0.00 3.41
4637 6103 2.505866 GCGTTTTGTTGTCGATGGATC 58.494 47.619 0.00 0.00 0.00 3.36
4638 6104 2.727916 GCGTTTTGTTGTCGATGGATCC 60.728 50.000 4.20 4.20 0.00 3.36
4639 6105 2.482336 CGTTTTGTTGTCGATGGATCCA 59.518 45.455 18.88 18.88 0.00 3.41
4640 6106 3.126858 CGTTTTGTTGTCGATGGATCCAT 59.873 43.478 27.66 27.66 39.69 3.41
4668 6154 3.253230 TCAGTATGTGTTCGCATGTCTG 58.747 45.455 17.72 17.72 37.40 3.51
4711 6197 0.391661 GCTTCTCTTCATCGGTGGCA 60.392 55.000 0.00 0.00 0.00 4.92
4767 6253 2.595463 ACGACGACTTCCCGACCA 60.595 61.111 0.00 0.00 0.00 4.02
4828 6316 1.446099 GATGACGGCAGCGTCTTCA 60.446 57.895 19.39 7.15 40.49 3.02
4865 6353 2.825075 TAGCCGTCGCTAGGTGGTCA 62.825 60.000 0.00 0.00 46.08 4.02
4866 6354 2.490217 CCGTCGCTAGGTGGTCAG 59.510 66.667 0.00 0.00 0.00 3.51
4995 6497 6.796785 AAATACAGGAAATCATGGGAAAGG 57.203 37.500 0.00 0.00 30.95 3.11
4999 6501 5.449553 ACAGGAAATCATGGGAAAGGATAC 58.550 41.667 0.00 0.00 30.95 2.24
5001 6503 5.893255 CAGGAAATCATGGGAAAGGATACAA 59.107 40.000 0.00 0.00 41.41 2.41
5023 6525 7.653647 ACAATTCTTCTTGGCGTACAATTTTA 58.346 30.769 0.00 0.00 38.65 1.52
5027 6529 5.414454 TCTTCTTGGCGTACAATTTTAGCAT 59.586 36.000 0.00 0.00 38.65 3.79
5048 6550 3.540617 TGTGAGTGTTTGAAGCTGCTAA 58.459 40.909 0.90 0.00 0.00 3.09
5049 6551 3.561310 TGTGAGTGTTTGAAGCTGCTAAG 59.439 43.478 0.90 0.00 0.00 2.18
5051 6553 2.485814 GAGTGTTTGAAGCTGCTAAGGG 59.514 50.000 0.90 0.00 0.00 3.95
5052 6554 1.068264 GTGTTTGAAGCTGCTAAGGGC 60.068 52.381 0.90 0.00 42.22 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 1.533338 GGCAGATTCGCATGCTTCTTG 60.533 52.381 17.13 8.70 42.19 3.02
151 153 0.658897 GAAACCGCCTCGTTTTGACA 59.341 50.000 0.00 0.00 36.10 3.58
155 157 2.255881 CCCGAAACCGCCTCGTTTT 61.256 57.895 0.00 0.00 36.10 2.43
381 385 2.996631 ACATGAAGCTTAGCCTGAAGG 58.003 47.619 0.00 0.00 38.53 3.46
405 409 6.539464 ACTGTAGTAGTAGTAGCAGTAAGCAG 59.461 42.308 13.88 6.18 41.63 4.24
424 428 7.334671 GGAAAATAAGGTGAGGAAGAACTGTAG 59.665 40.741 0.00 0.00 0.00 2.74
438 442 9.639601 GGATTTTACAAGAAGGAAAATAAGGTG 57.360 33.333 0.00 0.00 33.91 4.00
463 489 7.290248 TGGATACTTCAGAGGATTTAGGTAAGG 59.710 40.741 0.00 0.00 37.61 2.69
465 491 7.070821 GGTGGATACTTCAGAGGATTTAGGTAA 59.929 40.741 0.00 0.00 37.61 2.85
553 599 5.506982 GGCCTAGTAGTCCACAATAAGTACG 60.507 48.000 0.00 0.00 0.00 3.67
555 601 5.521696 TGGCCTAGTAGTCCACAATAAGTA 58.478 41.667 3.32 0.00 0.00 2.24
556 602 4.359105 TGGCCTAGTAGTCCACAATAAGT 58.641 43.478 3.32 0.00 0.00 2.24
564 610 3.028094 CCTTAGTGGCCTAGTAGTCCA 57.972 52.381 3.32 0.00 0.00 4.02
576 622 0.693049 ACTGGAACTGGCCTTAGTGG 59.307 55.000 3.32 0.00 39.35 4.00
577 623 1.072331 ACACTGGAACTGGCCTTAGTG 59.928 52.381 3.32 11.49 40.84 2.74
578 624 1.435256 ACACTGGAACTGGCCTTAGT 58.565 50.000 3.32 0.00 0.00 2.24
579 625 2.568623 AACACTGGAACTGGCCTTAG 57.431 50.000 3.32 0.00 0.00 2.18
580 626 3.244770 CCTTAACACTGGAACTGGCCTTA 60.245 47.826 3.32 0.00 0.00 2.69
581 627 2.489073 CCTTAACACTGGAACTGGCCTT 60.489 50.000 3.32 0.00 0.00 4.35
612 658 6.040278 TCTGATTAACACTTGCAACATTTCCA 59.960 34.615 0.00 0.00 0.00 3.53
663 709 7.669427 ACAATCTGTTTTTCCATGCTAAATCA 58.331 30.769 0.00 0.00 0.00 2.57
665 711 7.899973 AGACAATCTGTTTTTCCATGCTAAAT 58.100 30.769 0.00 0.00 0.00 1.40
966 1015 5.238650 CACGTCAAAAGGACTTCACCTAAAT 59.761 40.000 0.00 0.00 44.68 1.40
981 1030 3.930229 CCATCTTATCGTCCACGTCAAAA 59.070 43.478 0.00 0.00 40.80 2.44
985 1034 2.859032 GCTCCATCTTATCGTCCACGTC 60.859 54.545 0.00 0.00 40.80 4.34
992 1041 4.101585 TCCTGAAATGCTCCATCTTATCGT 59.898 41.667 0.00 0.00 0.00 3.73
1263 1312 8.897752 GCTGACTACAAAAATAAAGATGATCCT 58.102 33.333 0.00 0.00 0.00 3.24
1275 1324 3.056607 GGCACCATGCTGACTACAAAAAT 60.057 43.478 0.13 0.00 44.28 1.82
1356 1411 4.790765 TCACTGAGATGGTTAGTCACTG 57.209 45.455 0.00 0.00 0.00 3.66
1412 1467 0.529337 CCTTCTGCGCATCGATCTGT 60.529 55.000 12.24 0.00 0.00 3.41
1487 1542 3.083349 TGCTCAGGGATCACGGGG 61.083 66.667 0.00 0.00 0.00 5.73
1617 1693 4.718961 AGATTATCAATGTTAGCCGCCTT 58.281 39.130 0.00 0.00 0.00 4.35
1629 1705 9.228949 GAAATGACCTCATGCTAGATTATCAAT 57.771 33.333 0.00 0.00 36.56 2.57
1692 1774 2.541762 GAGTACGCGAACCGAGTAGTAT 59.458 50.000 15.93 0.00 43.41 2.12
1704 1786 3.943381 TCTTATGAAAGGAGAGTACGCGA 59.057 43.478 15.93 0.00 33.22 5.87
1710 1792 7.502060 TTTCTGGATCTTATGAAAGGAGAGT 57.498 36.000 0.00 0.00 33.22 3.24
1749 1831 6.696441 ACAACTATTTGTTTTTCCGGTACA 57.304 33.333 0.00 0.00 43.89 2.90
1774 1858 8.350722 CGGAGGTCGTACATGCTAATATATTAT 58.649 37.037 5.64 0.00 0.00 1.28
1793 1877 1.479730 AGTTAATTCCGGACGGAGGTC 59.520 52.381 13.64 4.83 46.06 3.85
1803 1887 6.645415 ACTCAGTTTAGTGACAGTTAATTCCG 59.355 38.462 0.00 0.00 0.00 4.30
1820 1904 4.274459 GTCACTGAAATGAGCACTCAGTTT 59.726 41.667 13.87 10.17 45.85 2.66
1840 1924 1.894466 TCGGTCCGGAATTAACTGTCA 59.106 47.619 5.23 0.00 0.00 3.58
1844 1928 0.828677 CCCTCGGTCCGGAATTAACT 59.171 55.000 5.23 0.00 0.00 2.24
1858 1942 5.067413 TGCAATAGAAAGTAGTACTCCCTCG 59.933 44.000 2.58 0.00 0.00 4.63
1904 2002 8.021396 GTCAGAAGGTGGTATTTTAATGAACAC 58.979 37.037 0.00 0.00 0.00 3.32
1962 2066 4.758773 TCATGATGGTCTTGTGCTGATA 57.241 40.909 0.00 0.00 0.00 2.15
1983 2087 0.966920 TTCCTTCGTCTCGCCTTCTT 59.033 50.000 0.00 0.00 0.00 2.52
2011 2115 2.003301 GCATCGAGTTCTTTGTCTCCC 58.997 52.381 0.00 0.00 0.00 4.30
2048 2152 7.288810 TCTGATTGAACAATTGGCTTTTACT 57.711 32.000 10.83 0.00 0.00 2.24
2090 2194 8.402472 TCCTAAAAATGTAACAACAACTCACTG 58.598 33.333 0.00 0.00 0.00 3.66
2092 2196 9.233232 CTTCCTAAAAATGTAACAACAACTCAC 57.767 33.333 0.00 0.00 0.00 3.51
2106 2210 8.954350 AGATCACAAGATGTCTTCCTAAAAATG 58.046 33.333 0.00 0.00 33.72 2.32
2108 2212 8.924511 AAGATCACAAGATGTCTTCCTAAAAA 57.075 30.769 0.00 0.00 33.72 1.94
2126 2239 3.068732 TCGATCATCACAGGGAAGATCAC 59.931 47.826 16.35 0.00 46.26 3.06
2155 2268 4.479158 TGCCAGATAAACCAAGAAAAGGT 58.521 39.130 0.00 0.00 42.34 3.50
2156 2269 4.766891 TCTGCCAGATAAACCAAGAAAAGG 59.233 41.667 0.00 0.00 0.00 3.11
2175 2292 0.673022 CACTGGCCAGAACTCTCTGC 60.673 60.000 39.19 0.00 46.76 4.26
2252 2369 2.104792 TCCTTGTGCTGCTGTTCTTAGT 59.895 45.455 0.00 0.00 0.00 2.24
2253 2370 2.771089 TCCTTGTGCTGCTGTTCTTAG 58.229 47.619 0.00 0.00 0.00 2.18
2254 2371 2.928801 TCCTTGTGCTGCTGTTCTTA 57.071 45.000 0.00 0.00 0.00 2.10
2255 2372 2.057137 TTCCTTGTGCTGCTGTTCTT 57.943 45.000 0.00 0.00 0.00 2.52
2256 2373 2.283145 ATTCCTTGTGCTGCTGTTCT 57.717 45.000 0.00 0.00 0.00 3.01
2257 2374 4.503741 TTAATTCCTTGTGCTGCTGTTC 57.496 40.909 0.00 0.00 0.00 3.18
2258 2375 5.473066 AATTAATTCCTTGTGCTGCTGTT 57.527 34.783 0.00 0.00 0.00 3.16
2259 2376 6.588719 TTAATTAATTCCTTGTGCTGCTGT 57.411 33.333 3.39 0.00 0.00 4.40
2289 2406 3.266636 TGTGGCCATGTTAGTATTGTCG 58.733 45.455 9.72 0.00 0.00 4.35
2375 2492 2.666619 CGTGCGTACGTCCTAATATCCC 60.667 54.545 18.32 0.00 44.99 3.85
2504 2745 8.314021 ACCCTTCCTTTTTCTGCTTATTAATTG 58.686 33.333 0.00 0.00 0.00 2.32
2584 2825 8.270030 TGTGCTAGTAGTAGGAGTACTTTCATA 58.730 37.037 6.73 0.00 40.23 2.15
2585 2826 7.117397 TGTGCTAGTAGTAGGAGTACTTTCAT 58.883 38.462 6.73 0.00 40.23 2.57
2586 2827 6.479006 TGTGCTAGTAGTAGGAGTACTTTCA 58.521 40.000 6.73 0.00 40.23 2.69
2587 2828 6.598850 ACTGTGCTAGTAGTAGGAGTACTTTC 59.401 42.308 6.73 0.00 40.23 2.62
2588 2829 6.483405 ACTGTGCTAGTAGTAGGAGTACTTT 58.517 40.000 6.73 0.00 40.23 2.66
2589 2830 6.064735 ACTGTGCTAGTAGTAGGAGTACTT 57.935 41.667 6.73 0.00 40.23 2.24
2590 2831 5.697082 ACTGTGCTAGTAGTAGGAGTACT 57.303 43.478 6.73 0.00 42.49 2.73
2591 2832 7.047271 AGTAACTGTGCTAGTAGTAGGAGTAC 58.953 42.308 6.73 4.52 39.18 2.73
2592 2833 7.093156 TGAGTAACTGTGCTAGTAGTAGGAGTA 60.093 40.741 6.73 0.00 39.18 2.59
2593 2834 6.064735 AGTAACTGTGCTAGTAGTAGGAGT 57.935 41.667 6.73 0.00 39.18 3.85
2594 2835 6.114089 TGAGTAACTGTGCTAGTAGTAGGAG 58.886 44.000 6.73 0.00 39.18 3.69
2595 2836 6.058553 TGAGTAACTGTGCTAGTAGTAGGA 57.941 41.667 6.73 0.33 39.18 2.94
2596 2837 5.881443 ACTGAGTAACTGTGCTAGTAGTAGG 59.119 44.000 6.73 0.00 39.18 3.18
2597 2838 6.988622 ACTGAGTAACTGTGCTAGTAGTAG 57.011 41.667 0.00 0.00 39.18 2.57
2598 2839 7.065563 GCTAACTGAGTAACTGTGCTAGTAGTA 59.934 40.741 0.00 0.00 39.18 1.82
2599 2840 6.127952 GCTAACTGAGTAACTGTGCTAGTAGT 60.128 42.308 0.00 0.00 39.18 2.73
2600 2841 6.127980 TGCTAACTGAGTAACTGTGCTAGTAG 60.128 42.308 0.00 0.00 39.18 2.57
2601 2842 5.708697 TGCTAACTGAGTAACTGTGCTAGTA 59.291 40.000 0.00 0.00 39.18 1.82
2602 2843 4.523173 TGCTAACTGAGTAACTGTGCTAGT 59.477 41.667 0.00 0.00 42.89 2.57
2603 2844 5.060662 TGCTAACTGAGTAACTGTGCTAG 57.939 43.478 0.00 0.00 0.00 3.42
2604 2845 5.661056 ATGCTAACTGAGTAACTGTGCTA 57.339 39.130 0.00 0.00 0.00 3.49
2605 2846 4.543590 ATGCTAACTGAGTAACTGTGCT 57.456 40.909 0.00 0.00 0.00 4.40
2606 2847 6.313905 ACAATATGCTAACTGAGTAACTGTGC 59.686 38.462 0.00 0.00 0.00 4.57
2607 2848 7.253783 CGACAATATGCTAACTGAGTAACTGTG 60.254 40.741 0.00 0.00 0.00 3.66
2608 2849 6.752351 CGACAATATGCTAACTGAGTAACTGT 59.248 38.462 0.00 0.00 0.00 3.55
2609 2850 6.199154 CCGACAATATGCTAACTGAGTAACTG 59.801 42.308 0.00 0.00 0.00 3.16
2610 2851 6.096423 TCCGACAATATGCTAACTGAGTAACT 59.904 38.462 0.00 0.00 0.00 2.24
2664 4045 1.197721 GCCTTCATCTGTCCAACGTTG 59.802 52.381 21.47 21.47 0.00 4.10
2845 4226 1.204113 CCCAGCTTCTTGTCCCCTCT 61.204 60.000 0.00 0.00 0.00 3.69
3108 4501 1.452953 CGCTGATGCTCATGGCCATT 61.453 55.000 17.92 0.00 40.92 3.16
3213 4606 3.568538 GTCTTAACACTTGCAGCAATGG 58.431 45.455 8.67 6.46 0.00 3.16
3225 4618 0.808755 CCAATGGCGGGTCTTAACAC 59.191 55.000 0.00 0.00 0.00 3.32
3226 4619 0.402504 ACCAATGGCGGGTCTTAACA 59.597 50.000 0.00 0.00 31.49 2.41
3400 4835 0.744414 ATGCGTGCGTCCTGCTAATT 60.744 50.000 0.00 0.00 46.63 1.40
3402 4837 1.809619 GATGCGTGCGTCCTGCTAA 60.810 57.895 2.59 0.00 46.63 3.09
3403 4838 2.202743 GATGCGTGCGTCCTGCTA 60.203 61.111 2.59 0.00 46.63 3.49
3404 4839 3.670637 ATGATGCGTGCGTCCTGCT 62.671 57.895 11.29 0.00 46.63 4.24
3405 4840 3.160557 GATGATGCGTGCGTCCTGC 62.161 63.158 11.29 0.00 46.70 4.85
3406 4841 1.520120 AGATGATGCGTGCGTCCTG 60.520 57.895 11.29 0.00 0.00 3.86
3407 4842 1.520120 CAGATGATGCGTGCGTCCT 60.520 57.895 11.29 1.59 0.00 3.85
3408 4843 0.877649 ATCAGATGATGCGTGCGTCC 60.878 55.000 11.29 0.00 32.68 4.79
3634 5070 1.070786 CAGGTTGTGCGTGTAGGGT 59.929 57.895 0.00 0.00 0.00 4.34
3788 5226 2.676839 GACACGTAGAGGAGACGAATCA 59.323 50.000 1.71 0.00 42.98 2.57
4069 5509 9.492973 ACAAATTACTTTGCATGCTTTTCTAAT 57.507 25.926 20.33 10.13 44.63 1.73
4112 5552 8.770828 TCTTTAGTACTCACATACAAAAACTGC 58.229 33.333 0.00 0.00 0.00 4.40
4115 5555 9.543018 GCATCTTTAGTACTCACATACAAAAAC 57.457 33.333 0.00 0.00 0.00 2.43
4193 5633 6.574832 CACACAAATCTCAACTACACAAATCG 59.425 38.462 0.00 0.00 0.00 3.34
4201 5641 4.578928 ACAACCCACACAAATCTCAACTAC 59.421 41.667 0.00 0.00 0.00 2.73
4339 5783 2.637383 GGAGACGAGGCAGAACGGT 61.637 63.158 0.00 0.00 0.00 4.83
4343 5787 1.536073 CCACAGGAGACGAGGCAGAA 61.536 60.000 0.00 0.00 0.00 3.02
4373 5817 2.393768 CCACTGCATGCGTCTCCAC 61.394 63.158 14.09 0.00 0.00 4.02
4383 5827 4.195334 GGCCGGGATCCACTGCAT 62.195 66.667 15.23 0.00 0.00 3.96
4386 5830 3.411517 AAGGGCCGGGATCCACTG 61.412 66.667 15.23 2.24 0.00 3.66
4467 5912 3.330720 CCCCGCCTCACCTTTCCT 61.331 66.667 0.00 0.00 0.00 3.36
4482 5931 0.179936 CCATCTTCAGAGAGCCACCC 59.820 60.000 0.00 0.00 34.85 4.61
4485 5934 1.767088 CATCCCATCTTCAGAGAGCCA 59.233 52.381 0.00 0.00 34.85 4.75
4502 5951 3.145286 GCTAGGCAGGGAAAATCTCATC 58.855 50.000 0.00 0.00 0.00 2.92
4505 5954 1.477740 GGGCTAGGCAGGGAAAATCTC 60.478 57.143 19.14 0.00 0.00 2.75
4511 5960 2.692368 CAGGGGCTAGGCAGGGAA 60.692 66.667 19.14 0.00 0.00 3.97
4519 5968 3.470888 CCACCGGACAGGGGCTAG 61.471 72.222 9.46 0.00 44.00 3.42
4520 5969 4.326227 ACCACCGGACAGGGGCTA 62.326 66.667 9.46 0.00 44.00 3.93
4524 5973 3.901797 GAAGCACCACCGGACAGGG 62.902 68.421 9.46 6.56 46.96 4.45
4526 5975 0.108615 CTAGAAGCACCACCGGACAG 60.109 60.000 9.46 0.00 0.00 3.51
4527 5976 1.972198 CTAGAAGCACCACCGGACA 59.028 57.895 9.46 0.00 0.00 4.02
4528 5977 1.448013 GCTAGAAGCACCACCGGAC 60.448 63.158 9.46 0.00 41.89 4.79
4529 5978 2.656069 GGCTAGAAGCACCACCGGA 61.656 63.158 9.46 0.00 44.75 5.14
4530 5979 2.125106 GGCTAGAAGCACCACCGG 60.125 66.667 0.00 0.00 44.75 5.28
4531 5980 2.125106 GGGCTAGAAGCACCACCG 60.125 66.667 0.00 0.00 44.75 4.94
4610 6076 1.555477 GACAACAAAACGCCAACTGG 58.445 50.000 0.00 0.00 38.53 4.00
4637 6103 4.034394 CGAACACATACTGAATCCACATGG 59.966 45.833 0.00 0.00 0.00 3.66
4638 6104 4.494690 GCGAACACATACTGAATCCACATG 60.495 45.833 0.00 0.00 0.00 3.21
4639 6105 3.623060 GCGAACACATACTGAATCCACAT 59.377 43.478 0.00 0.00 0.00 3.21
4640 6106 3.000041 GCGAACACATACTGAATCCACA 59.000 45.455 0.00 0.00 0.00 4.17
4668 6154 1.680249 GGTCAGAGGGATTCAACCTGC 60.680 57.143 0.00 0.00 38.79 4.85
4711 6197 3.134804 ACCAGTGCACTAGAACAAGAACT 59.865 43.478 21.20 0.00 0.00 3.01
4767 6253 5.235516 CGGACAAACCTTGTTGTAGTAGAT 58.764 41.667 0.00 0.00 45.52 1.98
4828 6316 0.679505 TACAAACACTGGAGCGAGCT 59.320 50.000 0.00 0.00 0.00 4.09
4865 6353 7.716998 ACAAAGAATTACATATCCAGATTCGCT 59.283 33.333 0.00 0.00 33.22 4.93
4866 6354 7.865707 ACAAAGAATTACATATCCAGATTCGC 58.134 34.615 0.00 0.00 33.22 4.70
4901 6402 7.551035 AACTTCTGATCTATTCATCAACTGC 57.449 36.000 0.00 0.00 32.24 4.40
4961 6463 5.365403 TTTCCTGTATTTTTAGGTGCACG 57.635 39.130 11.45 0.00 35.54 5.34
4995 6497 6.417191 TTGTACGCCAAGAAGAATTGTATC 57.583 37.500 0.00 0.00 0.00 2.24
4999 6501 7.201350 GCTAAAATTGTACGCCAAGAAGAATTG 60.201 37.037 0.00 0.00 36.25 2.32
5001 6503 6.072175 TGCTAAAATTGTACGCCAAGAAGAAT 60.072 34.615 0.00 0.00 36.25 2.40
5023 6525 2.292569 CAGCTTCAAACACTCACATGCT 59.707 45.455 0.00 0.00 0.00 3.79
5027 6529 2.042686 AGCAGCTTCAAACACTCACA 57.957 45.000 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.