Multiple sequence alignment - TraesCS1D01G215500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G215500 chr1D 100.000 4202 0 0 1 4202 300857300 300861501 0.000000e+00 7760.0
1 TraesCS1D01G215500 chr1D 92.798 486 25 3 1 486 60170949 60170474 0.000000e+00 695.0
2 TraesCS1D01G215500 chr1D 91.718 483 30 3 1 483 451392528 451392056 0.000000e+00 662.0
3 TraesCS1D01G215500 chr1D 85.000 340 42 4 2527 2866 300718368 300718038 1.870000e-88 337.0
4 TraesCS1D01G215500 chr1D 79.762 336 59 4 2530 2865 300326114 300325788 7.020000e-58 235.0
5 TraesCS1D01G215500 chr1D 84.127 189 27 3 1803 1989 300718826 300718639 3.340000e-41 180.0
6 TraesCS1D01G215500 chr1B 90.688 2792 101 61 583 3273 406035274 406038007 0.000000e+00 3568.0
7 TraesCS1D01G215500 chr1B 87.071 874 45 25 3379 4202 406038071 406038926 0.000000e+00 926.0
8 TraesCS1D01G215500 chr1B 83.824 340 46 4 2527 2866 405905528 405905198 8.770000e-82 315.0
9 TraesCS1D01G215500 chr1B 78.488 344 63 6 2530 2872 405525353 405525020 9.150000e-52 215.0
10 TraesCS1D01G215500 chr1B 84.043 188 28 2 1803 1989 405905985 405905799 3.340000e-41 180.0
11 TraesCS1D01G215500 chr1B 87.931 58 7 0 1270 1327 405673617 405673560 7.540000e-08 69.4
12 TraesCS1D01G215500 chr1A 93.456 1467 52 18 979 2422 375467477 375468922 0.000000e+00 2137.0
13 TraesCS1D01G215500 chr1A 95.718 794 17 6 2479 3267 375468924 375469705 0.000000e+00 1262.0
14 TraesCS1D01G215500 chr1A 89.474 703 44 16 3516 4202 375469928 375470616 0.000000e+00 861.0
15 TraesCS1D01G215500 chr1A 91.971 411 23 8 581 983 375466797 375467205 6.100000e-158 568.0
16 TraesCS1D01G215500 chr1A 84.412 340 44 4 2527 2866 375112664 375112334 4.050000e-85 326.0
17 TraesCS1D01G215500 chr1A 78.994 338 62 4 2531 2868 374689986 374689658 5.470000e-54 222.0
18 TraesCS1D01G215500 chr1A 84.574 188 27 2 1803 1989 375113130 375112944 7.170000e-43 185.0
19 TraesCS1D01G215500 chr1A 88.136 59 6 1 1269 1327 374959678 374959621 7.540000e-08 69.4
20 TraesCS1D01G215500 chr2D 92.593 486 26 3 1 486 73126005 73125530 0.000000e+00 689.0
21 TraesCS1D01G215500 chr2D 92.421 475 32 4 1 472 36803908 36803435 0.000000e+00 675.0
22 TraesCS1D01G215500 chr2D 91.770 486 28 4 1 486 621749670 621750143 0.000000e+00 665.0
23 TraesCS1D01G215500 chr3D 92.371 485 27 3 1 485 584700525 584700051 0.000000e+00 682.0
24 TraesCS1D01G215500 chr7D 92.116 482 28 3 1 482 497561772 497562243 0.000000e+00 671.0
25 TraesCS1D01G215500 chr7D 91.770 486 30 3 1 486 50080964 50080489 0.000000e+00 667.0
26 TraesCS1D01G215500 chr4D 91.564 486 30 5 1 486 23003178 23002704 0.000000e+00 660.0
27 TraesCS1D01G215500 chr4D 85.484 372 39 10 2517 2874 508501893 508502263 1.430000e-99 374.0
28 TraesCS1D01G215500 chr4B 87.390 341 38 3 2527 2863 659329679 659329340 1.830000e-103 387.0
29 TraesCS1D01G215500 chr4B 87.027 185 24 0 1806 1990 659330285 659330101 4.260000e-50 209.0
30 TraesCS1D01G215500 chr5A 86.819 349 40 5 2521 2863 694760245 694760593 6.590000e-103 385.0
31 TraesCS1D01G215500 chr5A 86.458 192 26 0 1806 1997 694759648 694759839 1.180000e-50 211.0
32 TraesCS1D01G215500 chr5A 73.876 356 67 12 2527 2857 693673783 693673429 7.380000e-23 119.0
33 TraesCS1D01G215500 chr5A 82.203 118 20 1 1428 1545 85165127 85165011 2.670000e-17 100.0
34 TraesCS1D01G215500 chr6A 86.667 150 18 2 1833 1981 399722496 399722644 9.350000e-37 165.0
35 TraesCS1D01G215500 chr6A 85.185 162 20 2 1830 1989 16338203 16338362 3.360000e-36 163.0
36 TraesCS1D01G215500 chr5B 82.203 118 20 1 1428 1545 96765397 96765281 2.670000e-17 100.0
37 TraesCS1D01G215500 chr5D 81.356 118 21 1 1428 1545 91406618 91406502 1.240000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G215500 chr1D 300857300 300861501 4201 False 7760.0 7760 100.00000 1 4202 1 chr1D.!!$F1 4201
1 TraesCS1D01G215500 chr1D 300718038 300718826 788 True 258.5 337 84.56350 1803 2866 2 chr1D.!!$R4 1063
2 TraesCS1D01G215500 chr1B 406035274 406038926 3652 False 2247.0 3568 88.87950 583 4202 2 chr1B.!!$F1 3619
3 TraesCS1D01G215500 chr1B 405905198 405905985 787 True 247.5 315 83.93350 1803 2866 2 chr1B.!!$R3 1063
4 TraesCS1D01G215500 chr1A 375466797 375470616 3819 False 1207.0 2137 92.65475 581 4202 4 chr1A.!!$F1 3621
5 TraesCS1D01G215500 chr1A 375112334 375113130 796 True 255.5 326 84.49300 1803 2866 2 chr1A.!!$R3 1063
6 TraesCS1D01G215500 chr4B 659329340 659330285 945 True 298.0 387 87.20850 1806 2863 2 chr4B.!!$R1 1057
7 TraesCS1D01G215500 chr5A 694759648 694760593 945 False 298.0 385 86.63850 1806 2863 2 chr5A.!!$F1 1057

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.030908 CCTTGTAGATCTCCGGACGC 59.969 60.0 0.0 0.0 0.0 5.19 F
49 50 0.030908 CTTGTAGATCTCCGGACGCC 59.969 60.0 0.0 0.0 0.0 5.68 F
65 66 0.040692 CGCCGAATAGAACGATCCGA 60.041 55.0 0.0 0.0 0.0 4.55 F
1666 1970 0.178068 ATGTATCTGTGCGGGGTGTC 59.822 55.0 0.0 0.0 0.0 3.67 F
1668 1972 0.460284 GTATCTGTGCGGGGTGTCTG 60.460 60.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1058 1345 0.036010 GTGGGGAGTGAGTGATGGTG 60.036 60.000 0.00 0.0 0.00 4.17 R
1669 1973 0.232303 GGAAAGCGACTCAACACACG 59.768 55.000 0.00 0.0 0.00 4.49 R
1767 2071 2.338785 GCTTCAGCTTCAGGCACCC 61.339 63.158 0.00 0.0 44.79 4.61 R
2898 3587 0.031721 AGCCGCGTAGTAGCATTACC 59.968 55.000 4.92 0.0 36.85 2.85 R
3335 4067 0.183492 TCTCTGCAGTTGGGTTTGCT 59.817 50.000 14.67 0.0 40.87 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.988976 CACCAGAAAGGAGGATCAAGA 57.011 47.619 0.00 0.00 41.22 3.02
23 24 4.292186 CACCAGAAAGGAGGATCAAGAA 57.708 45.455 0.00 0.00 41.22 2.52
24 25 4.260170 CACCAGAAAGGAGGATCAAGAAG 58.740 47.826 0.00 0.00 41.22 2.85
25 26 4.019860 CACCAGAAAGGAGGATCAAGAAGA 60.020 45.833 0.00 0.00 41.22 2.87
26 27 4.599241 ACCAGAAAGGAGGATCAAGAAGAA 59.401 41.667 0.00 0.00 41.22 2.52
27 28 4.940654 CCAGAAAGGAGGATCAAGAAGAAC 59.059 45.833 0.00 0.00 41.22 3.01
28 29 5.280419 CCAGAAAGGAGGATCAAGAAGAACT 60.280 44.000 0.00 0.00 41.22 3.01
29 30 5.874261 CAGAAAGGAGGATCAAGAAGAACTC 59.126 44.000 0.00 0.00 36.25 3.01
30 31 4.835284 AAGGAGGATCAAGAAGAACTCC 57.165 45.455 0.00 0.00 46.65 3.85
32 33 4.835284 GGAGGATCAAGAAGAACTCCTT 57.165 45.455 0.00 0.00 44.65 3.36
33 34 4.512484 GGAGGATCAAGAAGAACTCCTTG 58.488 47.826 0.00 0.00 44.65 3.61
34 35 4.019771 GGAGGATCAAGAAGAACTCCTTGT 60.020 45.833 0.00 0.00 44.65 3.16
35 36 5.187967 GGAGGATCAAGAAGAACTCCTTGTA 59.812 44.000 0.00 0.00 44.65 2.41
36 37 6.293004 AGGATCAAGAAGAACTCCTTGTAG 57.707 41.667 1.21 0.00 40.32 2.74
37 38 6.019748 AGGATCAAGAAGAACTCCTTGTAGA 58.980 40.000 1.21 0.00 40.32 2.59
38 39 6.671779 AGGATCAAGAAGAACTCCTTGTAGAT 59.328 38.462 1.21 0.00 40.32 1.98
39 40 6.983890 GGATCAAGAAGAACTCCTTGTAGATC 59.016 42.308 1.21 0.00 40.32 2.75
40 41 7.147742 GGATCAAGAAGAACTCCTTGTAGATCT 60.148 40.741 0.00 0.00 40.32 2.75
41 42 7.164230 TCAAGAAGAACTCCTTGTAGATCTC 57.836 40.000 0.00 0.00 40.32 2.75
42 43 6.153680 TCAAGAAGAACTCCTTGTAGATCTCC 59.846 42.308 0.00 0.00 40.32 3.71
43 44 4.642885 AGAAGAACTCCTTGTAGATCTCCG 59.357 45.833 0.00 0.00 34.68 4.63
44 45 3.292460 AGAACTCCTTGTAGATCTCCGG 58.708 50.000 0.00 0.00 0.00 5.14
45 46 3.053544 AGAACTCCTTGTAGATCTCCGGA 60.054 47.826 2.93 2.93 0.00 5.14
46 47 2.657143 ACTCCTTGTAGATCTCCGGAC 58.343 52.381 0.00 0.00 0.00 4.79
47 48 1.604755 CTCCTTGTAGATCTCCGGACG 59.395 57.143 0.00 0.00 0.00 4.79
48 49 0.030908 CCTTGTAGATCTCCGGACGC 59.969 60.000 0.00 0.00 0.00 5.19
49 50 0.030908 CTTGTAGATCTCCGGACGCC 59.969 60.000 0.00 0.00 0.00 5.68
61 62 3.564455 GGACGCCGAATAGAACGAT 57.436 52.632 0.00 0.00 0.00 3.73
62 63 1.406447 GGACGCCGAATAGAACGATC 58.594 55.000 0.00 0.00 0.00 3.69
63 64 1.406447 GACGCCGAATAGAACGATCC 58.594 55.000 0.00 0.00 0.00 3.36
64 65 0.317603 ACGCCGAATAGAACGATCCG 60.318 55.000 0.00 0.00 0.00 4.18
65 66 0.040692 CGCCGAATAGAACGATCCGA 60.041 55.000 0.00 0.00 0.00 4.55
66 67 1.406447 GCCGAATAGAACGATCCGAC 58.594 55.000 0.00 0.00 0.00 4.79
67 68 1.268896 GCCGAATAGAACGATCCGACA 60.269 52.381 0.00 0.00 0.00 4.35
68 69 2.607282 GCCGAATAGAACGATCCGACAT 60.607 50.000 0.00 0.00 0.00 3.06
69 70 2.980476 CCGAATAGAACGATCCGACATG 59.020 50.000 0.00 0.00 0.00 3.21
70 71 2.980476 CGAATAGAACGATCCGACATGG 59.020 50.000 0.00 0.00 40.09 3.66
71 72 2.440539 ATAGAACGATCCGACATGGC 57.559 50.000 0.00 0.00 37.80 4.40
72 73 0.387929 TAGAACGATCCGACATGGCC 59.612 55.000 0.00 0.00 37.80 5.36
73 74 1.153449 GAACGATCCGACATGGCCA 60.153 57.895 8.56 8.56 37.80 5.36
74 75 1.153369 AACGATCCGACATGGCCAG 60.153 57.895 13.05 6.08 37.80 4.85
75 76 2.969238 CGATCCGACATGGCCAGC 60.969 66.667 13.05 1.78 37.80 4.85
76 77 2.969238 GATCCGACATGGCCAGCG 60.969 66.667 13.05 14.88 37.80 5.18
77 78 3.445518 GATCCGACATGGCCAGCGA 62.446 63.158 22.35 9.22 37.80 4.93
78 79 3.740128 ATCCGACATGGCCAGCGAC 62.740 63.158 22.35 11.20 37.80 5.19
80 81 4.794439 CGACATGGCCAGCGACGA 62.794 66.667 19.99 0.00 0.00 4.20
81 82 2.202932 GACATGGCCAGCGACGAT 60.203 61.111 13.05 0.00 0.00 3.73
82 83 2.202932 ACATGGCCAGCGACGATC 60.203 61.111 13.05 0.00 0.00 3.69
83 84 2.202919 CATGGCCAGCGACGATCA 60.203 61.111 13.05 0.00 0.00 2.92
84 85 1.596203 CATGGCCAGCGACGATCAT 60.596 57.895 13.05 0.00 0.00 2.45
85 86 1.301244 ATGGCCAGCGACGATCATC 60.301 57.895 13.05 0.00 0.00 2.92
86 87 2.031674 ATGGCCAGCGACGATCATCA 62.032 55.000 13.05 0.00 0.00 3.07
87 88 2.240500 GGCCAGCGACGATCATCAC 61.241 63.158 0.00 0.00 0.00 3.06
88 89 2.240500 GCCAGCGACGATCATCACC 61.241 63.158 0.00 0.00 0.00 4.02
89 90 1.141665 CCAGCGACGATCATCACCA 59.858 57.895 0.00 0.00 0.00 4.17
90 91 1.148157 CCAGCGACGATCATCACCAC 61.148 60.000 0.00 0.00 0.00 4.16
91 92 1.141881 AGCGACGATCATCACCACC 59.858 57.895 0.00 0.00 0.00 4.61
92 93 1.883084 GCGACGATCATCACCACCC 60.883 63.158 0.00 0.00 0.00 4.61
93 94 1.227263 CGACGATCATCACCACCCC 60.227 63.158 0.00 0.00 0.00 4.95
94 95 1.227263 GACGATCATCACCACCCCG 60.227 63.158 0.00 0.00 0.00 5.73
95 96 2.588877 CGATCATCACCACCCCGC 60.589 66.667 0.00 0.00 0.00 6.13
96 97 2.588877 GATCATCACCACCCCGCG 60.589 66.667 0.00 0.00 0.00 6.46
97 98 4.175337 ATCATCACCACCCCGCGG 62.175 66.667 21.04 21.04 0.00 6.46
125 126 2.605837 GGAGTCCGAAGAAAGGATCC 57.394 55.000 2.48 2.48 40.30 3.36
126 127 1.831736 GGAGTCCGAAGAAAGGATCCA 59.168 52.381 15.82 0.00 40.30 3.41
127 128 2.159028 GGAGTCCGAAGAAAGGATCCAG 60.159 54.545 15.82 0.00 40.30 3.86
128 129 2.761208 GAGTCCGAAGAAAGGATCCAGA 59.239 50.000 15.82 0.00 40.30 3.86
129 130 3.379452 AGTCCGAAGAAAGGATCCAGAT 58.621 45.455 15.82 0.00 40.30 2.90
130 131 3.133721 AGTCCGAAGAAAGGATCCAGATG 59.866 47.826 15.82 0.00 40.30 2.90
131 132 2.435805 TCCGAAGAAAGGATCCAGATGG 59.564 50.000 15.82 6.29 31.86 3.51
150 151 2.728180 TCCGATCTGGATTCGGCG 59.272 61.111 0.00 0.00 43.74 6.46
151 152 2.356313 CCGATCTGGATTCGGCGG 60.356 66.667 7.21 0.00 42.00 6.13
152 153 3.038417 CGATCTGGATTCGGCGGC 61.038 66.667 7.21 0.00 0.00 6.53
153 154 2.108976 GATCTGGATTCGGCGGCA 59.891 61.111 10.53 0.00 0.00 5.69
154 155 2.203070 ATCTGGATTCGGCGGCAC 60.203 61.111 10.53 0.00 0.00 5.01
155 156 3.757248 ATCTGGATTCGGCGGCACC 62.757 63.158 10.53 8.60 0.00 5.01
177 178 4.265056 ACCACCGGTCAGGCCAAC 62.265 66.667 2.59 1.87 46.52 3.77
190 191 2.906897 CCAACGCAGCCACCACTT 60.907 61.111 0.00 0.00 0.00 3.16
191 192 2.639286 CAACGCAGCCACCACTTC 59.361 61.111 0.00 0.00 0.00 3.01
192 193 2.186160 CAACGCAGCCACCACTTCA 61.186 57.895 0.00 0.00 0.00 3.02
193 194 2.186826 AACGCAGCCACCACTTCAC 61.187 57.895 0.00 0.00 0.00 3.18
194 195 3.716006 CGCAGCCACCACTTCACG 61.716 66.667 0.00 0.00 0.00 4.35
195 196 2.280797 GCAGCCACCACTTCACGA 60.281 61.111 0.00 0.00 0.00 4.35
196 197 2.607892 GCAGCCACCACTTCACGAC 61.608 63.158 0.00 0.00 0.00 4.34
197 198 1.227527 CAGCCACCACTTCACGACA 60.228 57.895 0.00 0.00 0.00 4.35
198 199 1.227556 AGCCACCACTTCACGACAC 60.228 57.895 0.00 0.00 0.00 3.67
199 200 2.594962 GCCACCACTTCACGACACG 61.595 63.158 0.00 0.00 0.00 4.49
200 201 2.594962 CCACCACTTCACGACACGC 61.595 63.158 0.00 0.00 0.00 5.34
201 202 1.880796 CACCACTTCACGACACGCA 60.881 57.895 0.00 0.00 0.00 5.24
202 203 1.591594 ACCACTTCACGACACGCAG 60.592 57.895 0.00 0.00 0.00 5.18
203 204 2.310233 CCACTTCACGACACGCAGG 61.310 63.158 0.00 0.00 0.00 4.85
204 205 1.591594 CACTTCACGACACGCAGGT 60.592 57.895 0.00 0.00 0.00 4.00
205 206 1.299926 ACTTCACGACACGCAGGTC 60.300 57.895 0.00 0.00 34.42 3.85
240 241 3.822192 CACGACGCCGATGGGAGA 61.822 66.667 4.13 0.00 39.50 3.71
241 242 3.823330 ACGACGCCGATGGGAGAC 61.823 66.667 4.13 0.00 39.50 3.36
242 243 4.570663 CGACGCCGATGGGAGACC 62.571 72.222 4.13 0.00 45.57 3.85
289 290 4.388499 GCCCGGCGTTTCTCTGGA 62.388 66.667 6.01 0.00 31.56 3.86
290 291 2.584608 CCCGGCGTTTCTCTGGAT 59.415 61.111 6.01 0.00 31.56 3.41
291 292 1.521681 CCCGGCGTTTCTCTGGATC 60.522 63.158 6.01 0.00 31.56 3.36
292 293 1.521681 CCGGCGTTTCTCTGGATCC 60.522 63.158 4.20 4.20 31.56 3.36
293 294 1.521681 CGGCGTTTCTCTGGATCCC 60.522 63.158 9.90 0.00 0.00 3.85
294 295 1.521681 GGCGTTTCTCTGGATCCCG 60.522 63.158 9.90 2.27 0.00 5.14
295 296 2.174319 GCGTTTCTCTGGATCCCGC 61.174 63.158 9.90 11.41 0.00 6.13
296 297 1.517832 CGTTTCTCTGGATCCCGCT 59.482 57.895 9.90 0.00 0.00 5.52
297 298 0.807667 CGTTTCTCTGGATCCCGCTG 60.808 60.000 9.90 0.00 0.00 5.18
298 299 0.250513 GTTTCTCTGGATCCCGCTGT 59.749 55.000 9.90 0.00 0.00 4.40
299 300 0.537188 TTTCTCTGGATCCCGCTGTC 59.463 55.000 9.90 0.00 0.00 3.51
300 301 1.330655 TTCTCTGGATCCCGCTGTCC 61.331 60.000 9.90 0.00 35.02 4.02
301 302 2.764128 TCTGGATCCCGCTGTCCC 60.764 66.667 9.90 0.00 33.45 4.46
302 303 3.083349 CTGGATCCCGCTGTCCCA 61.083 66.667 9.90 0.00 33.45 4.37
303 304 2.366837 TGGATCCCGCTGTCCCAT 60.367 61.111 9.90 0.00 33.45 4.00
304 305 2.111878 GGATCCCGCTGTCCCATG 59.888 66.667 0.00 0.00 0.00 3.66
305 306 2.592861 GATCCCGCTGTCCCATGC 60.593 66.667 0.00 0.00 0.00 4.06
306 307 3.405093 GATCCCGCTGTCCCATGCA 62.405 63.158 0.00 0.00 0.00 3.96
307 308 2.891941 GATCCCGCTGTCCCATGCAA 62.892 60.000 0.00 0.00 0.00 4.08
308 309 2.898920 ATCCCGCTGTCCCATGCAAG 62.899 60.000 0.00 0.00 0.00 4.01
309 310 2.360350 CCGCTGTCCCATGCAAGT 60.360 61.111 0.00 0.00 0.00 3.16
310 311 2.401766 CCGCTGTCCCATGCAAGTC 61.402 63.158 0.00 0.00 0.00 3.01
311 312 1.672030 CGCTGTCCCATGCAAGTCA 60.672 57.895 0.00 0.00 0.00 3.41
312 313 1.236616 CGCTGTCCCATGCAAGTCAA 61.237 55.000 0.00 0.00 0.00 3.18
313 314 0.524862 GCTGTCCCATGCAAGTCAAG 59.475 55.000 0.00 0.00 0.00 3.02
314 315 1.883638 GCTGTCCCATGCAAGTCAAGA 60.884 52.381 0.00 0.00 0.00 3.02
315 316 1.808945 CTGTCCCATGCAAGTCAAGAC 59.191 52.381 0.00 0.00 0.00 3.01
316 317 0.798776 GTCCCATGCAAGTCAAGACG 59.201 55.000 0.00 0.00 36.20 4.18
317 318 0.321564 TCCCATGCAAGTCAAGACGG 60.322 55.000 0.00 0.00 36.20 4.79
318 319 0.321564 CCCATGCAAGTCAAGACGGA 60.322 55.000 0.00 0.00 36.20 4.69
319 320 1.081892 CCATGCAAGTCAAGACGGAG 58.918 55.000 0.00 0.00 36.20 4.63
320 321 1.338105 CCATGCAAGTCAAGACGGAGA 60.338 52.381 0.00 0.00 36.20 3.71
321 322 1.998315 CATGCAAGTCAAGACGGAGAG 59.002 52.381 0.00 0.00 36.20 3.20
322 323 0.318441 TGCAAGTCAAGACGGAGAGG 59.682 55.000 0.00 0.00 36.20 3.69
323 324 0.603569 GCAAGTCAAGACGGAGAGGA 59.396 55.000 0.00 0.00 36.20 3.71
324 325 1.205893 GCAAGTCAAGACGGAGAGGAT 59.794 52.381 0.00 0.00 36.20 3.24
325 326 2.886081 CAAGTCAAGACGGAGAGGATG 58.114 52.381 0.00 0.00 36.20 3.51
326 327 1.479709 AGTCAAGACGGAGAGGATGG 58.520 55.000 0.00 0.00 36.20 3.51
327 328 0.461961 GTCAAGACGGAGAGGATGGG 59.538 60.000 0.00 0.00 0.00 4.00
328 329 0.687757 TCAAGACGGAGAGGATGGGG 60.688 60.000 0.00 0.00 0.00 4.96
329 330 0.687757 CAAGACGGAGAGGATGGGGA 60.688 60.000 0.00 0.00 0.00 4.81
330 331 0.397816 AAGACGGAGAGGATGGGGAG 60.398 60.000 0.00 0.00 0.00 4.30
331 332 1.230497 GACGGAGAGGATGGGGAGA 59.770 63.158 0.00 0.00 0.00 3.71
332 333 0.397254 GACGGAGAGGATGGGGAGAA 60.397 60.000 0.00 0.00 0.00 2.87
333 334 0.397816 ACGGAGAGGATGGGGAGAAG 60.398 60.000 0.00 0.00 0.00 2.85
334 335 1.753368 CGGAGAGGATGGGGAGAAGC 61.753 65.000 0.00 0.00 0.00 3.86
335 336 1.414866 GGAGAGGATGGGGAGAAGCC 61.415 65.000 0.00 0.00 0.00 4.35
391 392 4.647615 CTATGGACGGCGGCGAGG 62.648 72.222 38.93 15.61 0.00 4.63
403 404 4.144727 GCGAGGAGGGGGAGAGGA 62.145 72.222 0.00 0.00 0.00 3.71
404 405 2.197324 CGAGGAGGGGGAGAGGAG 59.803 72.222 0.00 0.00 0.00 3.69
405 406 2.612251 GAGGAGGGGGAGAGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
406 407 2.015726 GAGGAGGGGGAGAGGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
407 408 2.018086 AGGAGGGGGAGAGGAGGAG 61.018 68.421 0.00 0.00 0.00 3.69
408 409 2.612251 GAGGGGGAGAGGAGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
409 410 2.015726 GAGGGGGAGAGGAGGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
410 411 2.018086 AGGGGGAGAGGAGGAGGAG 61.018 68.421 0.00 0.00 0.00 3.69
411 412 2.612251 GGGGAGAGGAGGAGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
412 413 2.123033 GGGAGAGGAGGAGGAGGC 60.123 72.222 0.00 0.00 0.00 4.70
413 414 2.710826 GGGAGAGGAGGAGGAGGCT 61.711 68.421 0.00 0.00 0.00 4.58
414 415 1.152546 GGAGAGGAGGAGGAGGCTC 60.153 68.421 5.78 5.78 0.00 4.70
415 416 1.528309 GAGAGGAGGAGGAGGCTCG 60.528 68.421 8.69 0.00 0.00 5.03
416 417 1.990160 GAGAGGAGGAGGAGGCTCGA 61.990 65.000 8.69 0.00 0.00 4.04
417 418 1.528309 GAGGAGGAGGAGGCTCGAG 60.528 68.421 8.45 8.45 0.00 4.04
418 419 2.520741 GGAGGAGGAGGCTCGAGG 60.521 72.222 15.58 0.00 0.00 4.63
419 420 2.520741 GAGGAGGAGGCTCGAGGG 60.521 72.222 15.58 0.00 0.00 4.30
420 421 4.150454 AGGAGGAGGCTCGAGGGG 62.150 72.222 15.58 0.00 0.00 4.79
505 506 3.566261 ACGCGAGTTGCAATCCAG 58.434 55.556 15.93 0.00 46.40 3.86
506 507 1.005037 ACGCGAGTTGCAATCCAGA 60.005 52.632 15.93 0.00 46.40 3.86
507 508 0.391661 ACGCGAGTTGCAATCCAGAT 60.392 50.000 15.93 0.00 46.40 2.90
508 509 0.302890 CGCGAGTTGCAATCCAGATC 59.697 55.000 0.00 0.00 46.97 2.75
509 510 1.372582 GCGAGTTGCAATCCAGATCA 58.627 50.000 0.59 0.00 45.45 2.92
510 511 1.329906 GCGAGTTGCAATCCAGATCAG 59.670 52.381 0.59 0.00 45.45 2.90
511 512 1.938577 CGAGTTGCAATCCAGATCAGG 59.061 52.381 0.59 0.00 0.00 3.86
512 513 2.419159 CGAGTTGCAATCCAGATCAGGA 60.419 50.000 9.57 9.57 43.01 3.86
513 514 3.204526 GAGTTGCAATCCAGATCAGGAG 58.795 50.000 12.86 1.21 41.90 3.69
514 515 2.842496 AGTTGCAATCCAGATCAGGAGA 59.158 45.455 12.86 0.00 41.90 3.71
515 516 3.118334 AGTTGCAATCCAGATCAGGAGAG 60.118 47.826 12.86 8.37 41.90 3.20
516 517 1.140452 TGCAATCCAGATCAGGAGAGC 59.860 52.381 20.16 20.16 41.90 4.09
517 518 1.140452 GCAATCCAGATCAGGAGAGCA 59.860 52.381 21.34 0.00 41.90 4.26
518 519 2.224572 GCAATCCAGATCAGGAGAGCAT 60.225 50.000 21.34 0.98 41.90 3.79
519 520 3.666274 CAATCCAGATCAGGAGAGCATC 58.334 50.000 12.86 0.00 41.90 3.91
527 528 4.899239 GGAGAGCATCCGCCGTGG 62.899 72.222 0.00 0.00 38.67 4.94
538 539 3.123620 GCCGTGGCAGCTGAAGAG 61.124 66.667 20.43 5.27 41.49 2.85
539 540 2.435586 CCGTGGCAGCTGAAGAGG 60.436 66.667 20.43 11.07 0.00 3.69
540 541 3.123620 CGTGGCAGCTGAAGAGGC 61.124 66.667 20.43 2.10 0.00 4.70
541 542 3.123620 GTGGCAGCTGAAGAGGCG 61.124 66.667 20.43 0.00 34.52 5.52
542 543 4.399395 TGGCAGCTGAAGAGGCGG 62.399 66.667 20.43 0.00 34.52 6.13
550 551 4.280494 GAAGAGGCGGCGGCGATA 62.280 66.667 36.87 0.00 41.24 2.92
551 552 3.785189 GAAGAGGCGGCGGCGATAA 62.785 63.158 36.87 0.00 41.24 1.75
552 553 4.587189 AGAGGCGGCGGCGATAAC 62.587 66.667 36.87 20.41 41.24 1.89
553 554 4.884257 GAGGCGGCGGCGATAACA 62.884 66.667 36.87 0.00 41.24 2.41
554 555 4.460683 AGGCGGCGGCGATAACAA 62.461 61.111 36.87 0.00 41.24 2.83
555 556 3.276846 GGCGGCGGCGATAACAAT 61.277 61.111 36.87 0.00 41.24 2.71
556 557 2.248431 GCGGCGGCGATAACAATC 59.752 61.111 36.87 10.85 0.00 2.67
557 558 2.935955 CGGCGGCGATAACAATCC 59.064 61.111 29.19 0.00 0.00 3.01
558 559 1.885388 CGGCGGCGATAACAATCCA 60.885 57.895 29.19 0.00 0.00 3.41
559 560 1.647084 GGCGGCGATAACAATCCAC 59.353 57.895 12.98 0.00 0.00 4.02
560 561 1.275657 GCGGCGATAACAATCCACG 59.724 57.895 12.98 0.00 0.00 4.94
561 562 1.149361 GCGGCGATAACAATCCACGA 61.149 55.000 12.98 0.00 0.00 4.35
562 563 0.852777 CGGCGATAACAATCCACGAG 59.147 55.000 0.00 0.00 0.00 4.18
563 564 1.535226 CGGCGATAACAATCCACGAGA 60.535 52.381 0.00 0.00 0.00 4.04
564 565 2.128035 GGCGATAACAATCCACGAGAG 58.872 52.381 0.00 0.00 0.00 3.20
566 567 3.187700 GCGATAACAATCCACGAGAGTT 58.812 45.455 0.00 0.00 46.40 3.01
567 568 3.000322 GCGATAACAATCCACGAGAGTTG 60.000 47.826 0.00 0.00 46.40 3.16
568 569 4.174009 CGATAACAATCCACGAGAGTTGT 58.826 43.478 0.00 0.00 46.40 3.32
569 570 5.337554 CGATAACAATCCACGAGAGTTGTA 58.662 41.667 0.00 0.00 46.40 2.41
570 571 5.229469 CGATAACAATCCACGAGAGTTGTAC 59.771 44.000 0.00 0.00 46.40 2.90
571 572 2.942710 ACAATCCACGAGAGTTGTACG 58.057 47.619 0.00 0.00 46.40 3.67
572 573 2.259618 CAATCCACGAGAGTTGTACGG 58.740 52.381 0.00 0.00 46.40 4.02
573 574 0.815734 ATCCACGAGAGTTGTACGGG 59.184 55.000 0.00 0.00 46.40 5.28
574 575 0.538057 TCCACGAGAGTTGTACGGGT 60.538 55.000 0.00 0.00 46.40 5.28
575 576 0.316204 CCACGAGAGTTGTACGGGTT 59.684 55.000 0.00 0.00 46.40 4.11
576 577 1.415374 CACGAGAGTTGTACGGGTTG 58.585 55.000 0.00 0.00 46.40 3.77
577 578 1.035139 ACGAGAGTTGTACGGGTTGT 58.965 50.000 0.00 0.00 46.40 3.32
578 579 1.000938 ACGAGAGTTGTACGGGTTGTC 60.001 52.381 0.00 0.00 46.40 3.18
579 580 1.268899 CGAGAGTTGTACGGGTTGTCT 59.731 52.381 0.00 0.00 0.00 3.41
584 585 2.029290 AGTTGTACGGGTTGTCTGCTAG 60.029 50.000 0.00 0.00 0.00 3.42
603 604 7.495934 TCTGCTAGGTTTATAAGCTGAAATGAC 59.504 37.037 0.00 0.00 40.04 3.06
616 617 3.697439 AATGACATGACCCGGCCGG 62.697 63.158 37.99 37.99 37.81 6.13
632 633 1.489824 CGGTGGTGCGTTTTACTCG 59.510 57.895 0.00 0.00 0.00 4.18
717 718 3.194861 GACATTGCTGTTCCGCTATACA 58.805 45.455 0.00 0.00 35.14 2.29
738 739 0.969149 TGCATCTCGAGTCCTGTTGT 59.031 50.000 13.13 0.00 0.00 3.32
799 802 2.674220 GGGCCTGACCTAAGCAGCT 61.674 63.158 0.84 0.00 39.10 4.24
800 803 1.451028 GGCCTGACCTAAGCAGCTG 60.451 63.158 10.11 10.11 34.51 4.24
968 980 1.454295 ACACACAAACCCGAACCCC 60.454 57.895 0.00 0.00 0.00 4.95
969 981 2.203238 ACACAAACCCGAACCCCG 60.203 61.111 0.00 0.00 38.18 5.73
970 982 2.203238 CACAAACCCGAACCCCGT 60.203 61.111 0.00 0.00 36.31 5.28
971 983 2.111669 ACAAACCCGAACCCCGTC 59.888 61.111 0.00 0.00 36.31 4.79
973 985 1.670083 CAAACCCGAACCCCGTCTC 60.670 63.158 0.00 0.00 36.31 3.36
974 986 3.230522 AAACCCGAACCCCGTCTCG 62.231 63.158 0.00 0.00 36.31 4.04
976 988 3.688159 CCCGAACCCCGTCTCGTT 61.688 66.667 0.00 0.00 36.31 3.85
977 989 2.431942 CCGAACCCCGTCTCGTTG 60.432 66.667 0.00 0.00 36.31 4.10
1058 1345 1.961277 CCACACAGGAACCGAGCAC 60.961 63.158 0.00 0.00 41.22 4.40
1099 1386 0.456824 CCACTCGTCAGATCCACACG 60.457 60.000 2.97 2.97 34.78 4.49
1136 1423 4.179599 CTCCCTCCCCCTCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
1140 1427 4.179599 CTCCCCCTCCCCTCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
1333 1626 0.797249 CGACGACAACGGTGAGGATC 60.797 60.000 7.88 0.00 44.46 3.36
1340 1636 4.271816 CGGTGAGGATCCTCCGCG 62.272 72.222 34.05 24.18 42.45 6.46
1342 1638 3.532155 GTGAGGATCCTCCGCGCT 61.532 66.667 34.05 2.89 42.46 5.92
1356 1652 3.157949 CGCTCCCTCCCTCCCTTC 61.158 72.222 0.00 0.00 0.00 3.46
1360 1656 1.866997 TCCCTCCCTCCCTTCCTCA 60.867 63.158 0.00 0.00 0.00 3.86
1361 1657 1.082954 CCCTCCCTCCCTTCCTCAA 59.917 63.158 0.00 0.00 0.00 3.02
1434 1730 1.470494 GCTTCTTTGGTCTTGCTAGGC 59.530 52.381 0.00 0.00 0.00 3.93
1559 1855 7.976826 TGCTACAAGGTAAATTAAATACCACG 58.023 34.615 18.10 12.48 44.35 4.94
1561 1857 9.097257 GCTACAAGGTAAATTAAATACCACGTA 57.903 33.333 18.10 16.16 44.35 3.57
1564 1860 9.374838 ACAAGGTAAATTAAATACCACGTAGAG 57.625 33.333 18.10 6.60 44.35 2.43
1658 1962 6.454318 GCATGCGTATAGTAATGTATCTGTGC 60.454 42.308 0.00 0.00 0.00 4.57
1661 1965 5.093457 CGTATAGTAATGTATCTGTGCGGG 58.907 45.833 0.00 0.00 30.67 6.13
1666 1970 0.178068 ATGTATCTGTGCGGGGTGTC 59.822 55.000 0.00 0.00 0.00 3.67
1668 1972 0.460284 GTATCTGTGCGGGGTGTCTG 60.460 60.000 0.00 0.00 0.00 3.51
1749 2053 3.255379 GCTTAGGAAGCGCGTCGG 61.255 66.667 17.05 8.27 45.74 4.79
1767 2071 4.116328 TTGGCGCTCGACCTCTCG 62.116 66.667 7.64 0.00 41.65 4.04
1799 2103 2.531508 GCTGAAGCTGACGTTTTTGTTG 59.468 45.455 0.00 0.00 38.21 3.33
2003 2307 2.987821 GAGTTCACACGGTAAGAAGAGC 59.012 50.000 0.00 0.00 0.00 4.09
2045 2357 1.881973 AGCAGTACCAGTGCAACATTG 59.118 47.619 8.15 0.00 46.65 2.82
2046 2358 1.879380 GCAGTACCAGTGCAACATTGA 59.121 47.619 0.97 0.00 43.79 2.57
2422 3006 2.806244 AGATACAATATTCCGCCGCAAC 59.194 45.455 0.00 0.00 0.00 4.17
2432 3016 2.099062 GCCGCAACATCGAGCAAG 59.901 61.111 0.00 0.00 0.00 4.01
2446 3030 3.568007 TCGAGCAAGGCAACAAAACTAAT 59.432 39.130 0.00 0.00 41.41 1.73
2540 3222 2.203480 AATTGCAGGGTGCCGTGT 60.203 55.556 11.83 0.00 44.23 4.49
2555 3237 3.636231 TGTGAGTTCCCGGGGCTG 61.636 66.667 23.50 0.00 0.00 4.85
2717 3405 4.436998 GAGTCGTGGGGCTCCGTG 62.437 72.222 0.00 0.00 35.24 4.94
2885 3573 1.666209 CCCACCATGATTCCGTTGCC 61.666 60.000 0.00 0.00 0.00 4.52
2886 3574 0.964860 CCACCATGATTCCGTTGCCA 60.965 55.000 0.00 0.00 0.00 4.92
2887 3575 0.887247 CACCATGATTCCGTTGCCAA 59.113 50.000 0.00 0.00 0.00 4.52
2898 3587 0.999406 CGTTGCCAATCGGAGTACTG 59.001 55.000 0.00 0.00 0.00 2.74
2940 3629 0.240145 TGCTACGGTCAAGTGAGTCG 59.760 55.000 0.00 3.38 0.00 4.18
2971 3668 1.287041 GGAGTGTACGGTCGTTTGCC 61.287 60.000 0.16 0.00 0.00 4.52
2998 3695 3.365820 GTCGTTGTAAACTGTATCGGGTG 59.634 47.826 0.00 0.00 46.99 4.61
3000 3697 3.667360 GTTGTAAACTGTATCGGGTGGT 58.333 45.455 0.00 0.00 45.32 4.16
3002 3699 2.027929 TGTAAACTGTATCGGGTGGTGG 60.028 50.000 0.00 0.00 0.00 4.61
3003 3700 0.326927 AAACTGTATCGGGTGGTGGG 59.673 55.000 0.00 0.00 0.00 4.61
3004 3701 1.559065 AACTGTATCGGGTGGTGGGG 61.559 60.000 0.00 0.00 0.00 4.96
3005 3702 2.689402 TGTATCGGGTGGTGGGGG 60.689 66.667 0.00 0.00 0.00 5.40
3006 3703 2.689771 GTATCGGGTGGTGGGGGT 60.690 66.667 0.00 0.00 0.00 4.95
3007 3704 2.689402 TATCGGGTGGTGGGGGTG 60.689 66.667 0.00 0.00 0.00 4.61
3008 3705 3.566016 TATCGGGTGGTGGGGGTGT 62.566 63.158 0.00 0.00 0.00 4.16
3075 3796 1.762858 GGGTCTGGGTCTCTAGGGC 60.763 68.421 0.00 0.00 0.00 5.19
3164 3886 3.394836 GCTCTCCCGCCCACTCTT 61.395 66.667 0.00 0.00 0.00 2.85
3273 4005 6.315393 CGTACTTGTGCCTCCTTTTATTATGT 59.685 38.462 0.00 0.00 0.00 2.29
3278 4010 7.624360 TGTGCCTCCTTTTATTATGTACTTG 57.376 36.000 0.00 0.00 0.00 3.16
3279 4011 7.172342 TGTGCCTCCTTTTATTATGTACTTGT 58.828 34.615 0.00 0.00 0.00 3.16
3280 4012 7.120579 TGTGCCTCCTTTTATTATGTACTTGTG 59.879 37.037 0.00 0.00 0.00 3.33
3281 4013 7.335924 GTGCCTCCTTTTATTATGTACTTGTGA 59.664 37.037 0.00 0.00 0.00 3.58
3282 4014 7.335924 TGCCTCCTTTTATTATGTACTTGTGAC 59.664 37.037 0.00 0.00 0.00 3.67
3284 4016 9.099454 CCTCCTTTTATTATGTACTTGTGACTC 57.901 37.037 0.00 0.00 0.00 3.36
3330 4062 8.822652 ACTGAAGGAAAAAGCATTTAATCTTG 57.177 30.769 0.00 0.00 37.28 3.02
3331 4063 8.641541 ACTGAAGGAAAAAGCATTTAATCTTGA 58.358 29.630 0.00 0.00 37.28 3.02
3332 4064 9.480053 CTGAAGGAAAAAGCATTTAATCTTGAA 57.520 29.630 0.00 0.00 37.28 2.69
3333 4065 9.480053 TGAAGGAAAAAGCATTTAATCTTGAAG 57.520 29.630 0.00 0.00 37.28 3.02
3334 4066 9.696917 GAAGGAAAAAGCATTTAATCTTGAAGA 57.303 29.630 0.00 0.00 37.28 2.87
3336 4068 9.702494 AGGAAAAAGCATTTAATCTTGAAGAAG 57.298 29.630 0.00 0.00 37.28 2.85
3337 4069 8.438513 GGAAAAAGCATTTAATCTTGAAGAAGC 58.561 33.333 0.00 0.00 37.28 3.86
3338 4070 8.891671 AAAAAGCATTTAATCTTGAAGAAGCA 57.108 26.923 0.00 0.00 37.28 3.91
3339 4071 8.891671 AAAAGCATTTAATCTTGAAGAAGCAA 57.108 26.923 0.00 0.00 37.28 3.91
3340 4072 8.891671 AAAGCATTTAATCTTGAAGAAGCAAA 57.108 26.923 0.00 0.60 35.86 3.68
3341 4073 7.880059 AGCATTTAATCTTGAAGAAGCAAAC 57.120 32.000 0.00 0.00 0.00 2.93
3342 4074 6.870439 AGCATTTAATCTTGAAGAAGCAAACC 59.130 34.615 0.00 0.00 0.00 3.27
3343 4075 6.091305 GCATTTAATCTTGAAGAAGCAAACCC 59.909 38.462 0.00 0.00 0.00 4.11
3346 4078 4.590850 ATCTTGAAGAAGCAAACCCAAC 57.409 40.909 0.00 0.00 0.00 3.77
3350 4082 1.408702 GAAGAAGCAAACCCAACTGCA 59.591 47.619 0.00 0.00 41.17 4.41
3353 4085 1.000938 GAAGCAAACCCAACTGCAGAG 60.001 52.381 23.35 12.34 41.17 3.35
3360 4092 1.093159 CCCAACTGCAGAGAAGCATC 58.907 55.000 23.35 0.00 44.68 3.91
3366 4098 4.436242 ACTGCAGAGAAGCATCAAAATG 57.564 40.909 23.35 0.00 44.68 2.32
3394 4135 8.229253 TGGAATTTGATTTCATCACATCCTAG 57.771 34.615 10.63 0.00 39.39 3.02
3395 4136 7.286087 TGGAATTTGATTTCATCACATCCTAGG 59.714 37.037 0.82 0.82 39.39 3.02
3399 4140 8.737168 TTTGATTTCATCACATCCTAGGTAAG 57.263 34.615 9.08 2.49 39.39 2.34
3418 4159 0.530870 GCTCATAGTTCCGGGACAGC 60.531 60.000 17.22 11.64 0.00 4.40
3419 4160 0.249073 CTCATAGTTCCGGGACAGCG 60.249 60.000 17.22 2.01 0.00 5.18
3420 4161 0.968901 TCATAGTTCCGGGACAGCGT 60.969 55.000 17.22 0.00 0.00 5.07
3421 4162 0.742505 CATAGTTCCGGGACAGCGTA 59.257 55.000 17.22 0.00 0.00 4.42
3469 4225 4.457496 CGCCGTGCACCCAGATCT 62.457 66.667 12.15 0.00 0.00 2.75
3533 4289 2.287970 CGGCCTTTTACCGCTTCTTTTT 60.288 45.455 0.00 0.00 44.90 1.94
3564 4320 2.962253 GCCTAAGCAGCCGTAGCG 60.962 66.667 0.00 0.00 46.67 4.26
3736 4495 1.657822 GCCTTGTCCGGAGAGAAATC 58.342 55.000 3.06 0.00 0.00 2.17
3844 4606 2.675423 GGGTCCGGGCCTTCAAAC 60.675 66.667 27.44 2.28 0.00 2.93
3871 4633 4.649310 TGTACCGCGTCGCTTGCA 62.649 61.111 16.36 8.91 0.00 4.08
3872 4634 3.838795 GTACCGCGTCGCTTGCAG 61.839 66.667 16.36 0.00 0.00 4.41
3935 4707 1.827399 ATTGTGGCTCCCTCGTTCGT 61.827 55.000 0.00 0.00 0.00 3.85
3963 4736 3.066190 CACCCCAGCACTGCATGG 61.066 66.667 3.30 7.99 36.27 3.66
4028 4806 0.389948 GAGTTGAGAATCGGCACCGT 60.390 55.000 9.23 0.00 38.61 4.83
4029 4807 0.892755 AGTTGAGAATCGGCACCGTA 59.107 50.000 9.23 0.00 38.61 4.02
4030 4808 1.135083 AGTTGAGAATCGGCACCGTAG 60.135 52.381 9.23 0.00 38.61 3.51
4124 4909 0.761187 CCGGATGTGTGATCAGGGAT 59.239 55.000 0.00 0.00 31.13 3.85
4158 4970 1.297689 ATCCGCCGATGGATGGATG 59.702 57.895 7.49 0.00 47.00 3.51
4159 4971 2.189191 ATCCGCCGATGGATGGATGG 62.189 60.000 7.49 0.00 47.00 3.51
4160 4972 2.743060 CGCCGATGGATGGATGGA 59.257 61.111 0.00 0.00 0.00 3.41
4161 4973 1.297689 CGCCGATGGATGGATGGAT 59.702 57.895 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.289160 TGATCCTCCTTTCTGGTGGG 58.711 55.000 3.39 0.00 46.67 4.61
2 3 3.988976 TCTTGATCCTCCTTTCTGGTG 57.011 47.619 0.00 0.00 37.07 4.17
3 4 4.171234 TCTTCTTGATCCTCCTTTCTGGT 58.829 43.478 0.00 0.00 37.07 4.00
5 6 5.803552 AGTTCTTCTTGATCCTCCTTTCTG 58.196 41.667 0.00 0.00 0.00 3.02
6 7 5.045942 GGAGTTCTTCTTGATCCTCCTTTCT 60.046 44.000 0.00 0.00 38.82 2.52
7 8 5.045942 AGGAGTTCTTCTTGATCCTCCTTTC 60.046 44.000 6.99 0.00 44.42 2.62
8 9 4.849235 AGGAGTTCTTCTTGATCCTCCTTT 59.151 41.667 6.99 0.00 44.42 3.11
9 10 4.434195 AGGAGTTCTTCTTGATCCTCCTT 58.566 43.478 6.99 0.00 44.42 3.36
10 11 4.073425 AGGAGTTCTTCTTGATCCTCCT 57.927 45.455 6.99 6.99 43.19 3.69
11 12 4.019771 ACAAGGAGTTCTTCTTGATCCTCC 60.020 45.833 22.85 0.00 41.94 4.30
12 13 5.159273 ACAAGGAGTTCTTCTTGATCCTC 57.841 43.478 22.85 0.00 41.94 3.71
13 14 6.019748 TCTACAAGGAGTTCTTCTTGATCCT 58.980 40.000 22.85 7.21 41.94 3.24
14 15 6.287589 TCTACAAGGAGTTCTTCTTGATCC 57.712 41.667 22.85 0.00 41.94 3.36
15 16 7.781056 AGATCTACAAGGAGTTCTTCTTGATC 58.219 38.462 22.85 16.02 41.94 2.92
16 17 7.147742 GGAGATCTACAAGGAGTTCTTCTTGAT 60.148 40.741 22.85 9.63 41.94 2.57
17 18 6.153680 GGAGATCTACAAGGAGTTCTTCTTGA 59.846 42.308 22.85 9.28 41.94 3.02
18 19 6.337356 GGAGATCTACAAGGAGTTCTTCTTG 58.663 44.000 16.57 16.57 44.14 3.02
19 20 5.126384 CGGAGATCTACAAGGAGTTCTTCTT 59.874 44.000 5.61 0.00 32.41 2.52
20 21 4.642885 CGGAGATCTACAAGGAGTTCTTCT 59.357 45.833 5.61 0.00 32.41 2.85
21 22 4.202070 CCGGAGATCTACAAGGAGTTCTTC 60.202 50.000 5.61 0.00 32.41 2.87
22 23 3.702045 CCGGAGATCTACAAGGAGTTCTT 59.298 47.826 5.61 0.00 35.79 2.52
23 24 3.053544 TCCGGAGATCTACAAGGAGTTCT 60.054 47.826 0.00 0.00 0.00 3.01
24 25 3.067040 GTCCGGAGATCTACAAGGAGTTC 59.933 52.174 3.06 0.00 0.00 3.01
25 26 3.025262 GTCCGGAGATCTACAAGGAGTT 58.975 50.000 3.06 0.00 0.00 3.01
26 27 2.657143 GTCCGGAGATCTACAAGGAGT 58.343 52.381 3.06 0.00 0.00 3.85
27 28 1.604755 CGTCCGGAGATCTACAAGGAG 59.395 57.143 3.06 0.00 0.00 3.69
28 29 1.676746 CGTCCGGAGATCTACAAGGA 58.323 55.000 3.06 1.27 0.00 3.36
29 30 0.030908 GCGTCCGGAGATCTACAAGG 59.969 60.000 3.06 0.00 0.00 3.61
30 31 0.030908 GGCGTCCGGAGATCTACAAG 59.969 60.000 3.06 0.00 0.00 3.16
31 32 1.721664 CGGCGTCCGGAGATCTACAA 61.722 60.000 3.06 0.00 44.15 2.41
32 33 2.184830 CGGCGTCCGGAGATCTACA 61.185 63.158 3.06 0.00 44.15 2.74
33 34 2.638154 CGGCGTCCGGAGATCTAC 59.362 66.667 3.06 0.00 44.15 2.59
43 44 1.406447 GATCGTTCTATTCGGCGTCC 58.594 55.000 6.85 0.00 0.00 4.79
44 45 1.406447 GGATCGTTCTATTCGGCGTC 58.594 55.000 6.85 0.00 0.00 5.19
45 46 0.317603 CGGATCGTTCTATTCGGCGT 60.318 55.000 6.85 0.00 0.00 5.68
46 47 0.040692 TCGGATCGTTCTATTCGGCG 60.041 55.000 0.00 0.00 0.00 6.46
47 48 1.268896 TGTCGGATCGTTCTATTCGGC 60.269 52.381 0.00 0.00 32.95 5.54
48 49 2.768833 TGTCGGATCGTTCTATTCGG 57.231 50.000 0.00 0.00 0.00 4.30
49 50 2.980476 CCATGTCGGATCGTTCTATTCG 59.020 50.000 0.00 0.00 36.56 3.34
50 51 2.731976 GCCATGTCGGATCGTTCTATTC 59.268 50.000 0.00 0.00 36.56 1.75
51 52 2.548067 GGCCATGTCGGATCGTTCTATT 60.548 50.000 0.00 0.00 36.56 1.73
52 53 1.000955 GGCCATGTCGGATCGTTCTAT 59.999 52.381 0.00 0.00 36.56 1.98
53 54 0.387929 GGCCATGTCGGATCGTTCTA 59.612 55.000 0.00 0.00 36.56 2.10
54 55 1.144057 GGCCATGTCGGATCGTTCT 59.856 57.895 0.00 0.00 36.56 3.01
55 56 1.153449 TGGCCATGTCGGATCGTTC 60.153 57.895 0.00 0.00 36.56 3.95
56 57 1.153369 CTGGCCATGTCGGATCGTT 60.153 57.895 5.51 0.00 36.56 3.85
57 58 2.501128 CTGGCCATGTCGGATCGT 59.499 61.111 5.51 0.00 36.56 3.73
58 59 2.969238 GCTGGCCATGTCGGATCG 60.969 66.667 5.51 0.00 36.56 3.69
59 60 2.969238 CGCTGGCCATGTCGGATC 60.969 66.667 5.51 0.00 36.56 3.36
60 61 3.469970 TCGCTGGCCATGTCGGAT 61.470 61.111 5.51 0.00 36.56 4.18
61 62 4.451150 GTCGCTGGCCATGTCGGA 62.451 66.667 5.51 0.00 36.56 4.55
63 64 4.794439 TCGTCGCTGGCCATGTCG 62.794 66.667 5.51 12.13 0.00 4.35
64 65 2.202932 ATCGTCGCTGGCCATGTC 60.203 61.111 5.51 0.00 0.00 3.06
65 66 2.202932 GATCGTCGCTGGCCATGT 60.203 61.111 5.51 0.00 0.00 3.21
66 67 1.563435 GATGATCGTCGCTGGCCATG 61.563 60.000 5.51 1.37 0.00 3.66
67 68 1.301244 GATGATCGTCGCTGGCCAT 60.301 57.895 5.51 0.00 0.00 4.40
68 69 2.106938 GATGATCGTCGCTGGCCA 59.893 61.111 4.71 4.71 0.00 5.36
69 70 2.106938 TGATGATCGTCGCTGGCC 59.893 61.111 10.32 0.00 0.00 5.36
70 71 2.240500 GGTGATGATCGTCGCTGGC 61.241 63.158 23.97 7.74 0.00 4.85
71 72 1.141665 TGGTGATGATCGTCGCTGG 59.858 57.895 23.97 0.00 0.00 4.85
72 73 1.148157 GGTGGTGATGATCGTCGCTG 61.148 60.000 23.97 0.00 0.00 5.18
73 74 1.141881 GGTGGTGATGATCGTCGCT 59.858 57.895 23.97 0.00 0.00 4.93
74 75 1.883084 GGGTGGTGATGATCGTCGC 60.883 63.158 18.40 18.40 0.00 5.19
75 76 1.227263 GGGGTGGTGATGATCGTCG 60.227 63.158 10.32 0.00 0.00 5.12
76 77 1.227263 CGGGGTGGTGATGATCGTC 60.227 63.158 8.06 8.06 0.00 4.20
77 78 2.900273 CGGGGTGGTGATGATCGT 59.100 61.111 0.00 0.00 0.00 3.73
78 79 2.588877 GCGGGGTGGTGATGATCG 60.589 66.667 0.00 0.00 0.00 3.69
79 80 2.588877 CGCGGGGTGGTGATGATC 60.589 66.667 0.00 0.00 0.00 2.92
80 81 4.175337 CCGCGGGGTGGTGATGAT 62.175 66.667 20.10 0.00 0.00 2.45
106 107 1.831736 TGGATCCTTTCTTCGGACTCC 59.168 52.381 14.23 0.00 32.41 3.85
107 108 2.761208 TCTGGATCCTTTCTTCGGACTC 59.239 50.000 14.23 0.00 32.41 3.36
108 109 2.821437 TCTGGATCCTTTCTTCGGACT 58.179 47.619 14.23 0.00 32.41 3.85
109 110 3.462021 CATCTGGATCCTTTCTTCGGAC 58.538 50.000 14.23 0.00 32.41 4.79
110 111 2.435805 CCATCTGGATCCTTTCTTCGGA 59.564 50.000 14.23 0.00 37.39 4.55
111 112 2.435805 TCCATCTGGATCCTTTCTTCGG 59.564 50.000 14.23 4.67 39.78 4.30
112 113 3.827008 TCCATCTGGATCCTTTCTTCG 57.173 47.619 14.23 0.00 39.78 3.79
135 136 3.038417 GCCGCCGAATCCAGATCG 61.038 66.667 0.00 0.00 39.92 3.69
136 137 2.108976 TGCCGCCGAATCCAGATC 59.891 61.111 0.00 0.00 0.00 2.75
137 138 2.203070 GTGCCGCCGAATCCAGAT 60.203 61.111 0.00 0.00 0.00 2.90
138 139 4.467084 GGTGCCGCCGAATCCAGA 62.467 66.667 0.00 0.00 0.00 3.86
160 161 4.265056 GTTGGCCTGACCGGTGGT 62.265 66.667 14.63 0.00 43.94 4.16
173 174 2.906897 AAGTGGTGGCTGCGTTGG 60.907 61.111 0.00 0.00 0.00 3.77
174 175 2.186160 TGAAGTGGTGGCTGCGTTG 61.186 57.895 0.00 0.00 0.00 4.10
175 176 2.186826 GTGAAGTGGTGGCTGCGTT 61.187 57.895 0.00 0.00 0.00 4.84
176 177 2.591715 GTGAAGTGGTGGCTGCGT 60.592 61.111 0.00 0.00 0.00 5.24
177 178 3.716006 CGTGAAGTGGTGGCTGCG 61.716 66.667 0.00 0.00 0.00 5.18
178 179 2.280797 TCGTGAAGTGGTGGCTGC 60.281 61.111 0.00 0.00 0.00 5.25
179 180 1.227527 TGTCGTGAAGTGGTGGCTG 60.228 57.895 0.00 0.00 0.00 4.85
180 181 1.227556 GTGTCGTGAAGTGGTGGCT 60.228 57.895 0.00 0.00 0.00 4.75
181 182 2.594962 CGTGTCGTGAAGTGGTGGC 61.595 63.158 0.00 0.00 0.00 5.01
182 183 2.594962 GCGTGTCGTGAAGTGGTGG 61.595 63.158 0.00 0.00 0.00 4.61
183 184 1.821241 CTGCGTGTCGTGAAGTGGTG 61.821 60.000 0.00 0.00 0.00 4.17
184 185 1.591594 CTGCGTGTCGTGAAGTGGT 60.592 57.895 0.00 0.00 0.00 4.16
185 186 2.310233 CCTGCGTGTCGTGAAGTGG 61.310 63.158 0.00 0.00 0.00 4.00
186 187 1.548973 GACCTGCGTGTCGTGAAGTG 61.549 60.000 0.00 0.00 0.00 3.16
187 188 1.299926 GACCTGCGTGTCGTGAAGT 60.300 57.895 0.00 0.00 0.00 3.01
188 189 3.538841 GACCTGCGTGTCGTGAAG 58.461 61.111 0.00 0.00 0.00 3.02
223 224 3.822192 TCTCCCATCGGCGTCGTG 61.822 66.667 10.18 7.19 37.69 4.35
224 225 3.823330 GTCTCCCATCGGCGTCGT 61.823 66.667 10.18 0.00 37.69 4.34
225 226 4.570663 GGTCTCCCATCGGCGTCG 62.571 72.222 1.15 1.15 37.82 5.12
226 227 4.222847 GGGTCTCCCATCGGCGTC 62.223 72.222 6.85 0.00 44.65 5.19
272 273 3.682292 ATCCAGAGAAACGCCGGGC 62.682 63.158 9.54 9.54 0.00 6.13
273 274 1.521681 GATCCAGAGAAACGCCGGG 60.522 63.158 2.18 0.00 0.00 5.73
274 275 1.521681 GGATCCAGAGAAACGCCGG 60.522 63.158 6.95 0.00 0.00 6.13
275 276 1.521681 GGGATCCAGAGAAACGCCG 60.522 63.158 15.23 0.00 0.00 6.46
276 277 1.521681 CGGGATCCAGAGAAACGCC 60.522 63.158 15.23 0.00 0.00 5.68
277 278 2.174319 GCGGGATCCAGAGAAACGC 61.174 63.158 16.86 14.37 36.04 4.84
278 279 0.807667 CAGCGGGATCCAGAGAAACG 60.808 60.000 16.86 8.00 0.00 3.60
279 280 0.250513 ACAGCGGGATCCAGAGAAAC 59.749 55.000 16.86 0.00 0.00 2.78
280 281 0.537188 GACAGCGGGATCCAGAGAAA 59.463 55.000 16.86 0.00 0.00 2.52
281 282 1.330655 GGACAGCGGGATCCAGAGAA 61.331 60.000 16.86 0.00 34.87 2.87
282 283 1.758514 GGACAGCGGGATCCAGAGA 60.759 63.158 16.86 0.00 34.87 3.10
283 284 2.801631 GGGACAGCGGGATCCAGAG 61.802 68.421 16.86 9.47 36.65 3.35
284 285 2.764128 GGGACAGCGGGATCCAGA 60.764 66.667 16.86 0.00 36.65 3.86
285 286 3.083349 TGGGACAGCGGGATCCAG 61.083 66.667 15.23 11.38 36.65 3.86
297 298 0.798776 CGTCTTGACTTGCATGGGAC 59.201 55.000 4.44 6.03 0.00 4.46
298 299 0.321564 CCGTCTTGACTTGCATGGGA 60.322 55.000 4.44 0.00 0.00 4.37
299 300 0.321564 TCCGTCTTGACTTGCATGGG 60.322 55.000 4.44 0.00 0.00 4.00
300 301 1.081892 CTCCGTCTTGACTTGCATGG 58.918 55.000 4.44 0.00 0.00 3.66
301 302 1.998315 CTCTCCGTCTTGACTTGCATG 59.002 52.381 0.00 0.00 0.00 4.06
302 303 1.066573 CCTCTCCGTCTTGACTTGCAT 60.067 52.381 0.00 0.00 0.00 3.96
303 304 0.318441 CCTCTCCGTCTTGACTTGCA 59.682 55.000 0.00 0.00 0.00 4.08
304 305 0.603569 TCCTCTCCGTCTTGACTTGC 59.396 55.000 0.00 0.00 0.00 4.01
305 306 2.417924 CCATCCTCTCCGTCTTGACTTG 60.418 54.545 0.00 0.00 0.00 3.16
306 307 1.827969 CCATCCTCTCCGTCTTGACTT 59.172 52.381 0.00 0.00 0.00 3.01
307 308 1.479709 CCATCCTCTCCGTCTTGACT 58.520 55.000 0.00 0.00 0.00 3.41
308 309 0.461961 CCCATCCTCTCCGTCTTGAC 59.538 60.000 0.00 0.00 0.00 3.18
309 310 0.687757 CCCCATCCTCTCCGTCTTGA 60.688 60.000 0.00 0.00 0.00 3.02
310 311 0.687757 TCCCCATCCTCTCCGTCTTG 60.688 60.000 0.00 0.00 0.00 3.02
311 312 0.397816 CTCCCCATCCTCTCCGTCTT 60.398 60.000 0.00 0.00 0.00 3.01
312 313 1.231641 CTCCCCATCCTCTCCGTCT 59.768 63.158 0.00 0.00 0.00 4.18
313 314 0.397254 TTCTCCCCATCCTCTCCGTC 60.397 60.000 0.00 0.00 0.00 4.79
314 315 0.397816 CTTCTCCCCATCCTCTCCGT 60.398 60.000 0.00 0.00 0.00 4.69
315 316 1.753368 GCTTCTCCCCATCCTCTCCG 61.753 65.000 0.00 0.00 0.00 4.63
316 317 1.414866 GGCTTCTCCCCATCCTCTCC 61.415 65.000 0.00 0.00 0.00 3.71
317 318 2.141312 GGCTTCTCCCCATCCTCTC 58.859 63.158 0.00 0.00 0.00 3.20
318 319 4.409257 GGCTTCTCCCCATCCTCT 57.591 61.111 0.00 0.00 0.00 3.69
374 375 4.647615 CCTCGCCGCCGTCCATAG 62.648 72.222 0.00 0.00 35.54 2.23
386 387 4.144727 TCCTCTCCCCCTCCTCGC 62.145 72.222 0.00 0.00 0.00 5.03
387 388 2.197324 CTCCTCTCCCCCTCCTCG 59.803 72.222 0.00 0.00 0.00 4.63
388 389 2.015726 TCCTCCTCTCCCCCTCCTC 61.016 68.421 0.00 0.00 0.00 3.71
389 390 2.018086 CTCCTCCTCTCCCCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
390 391 2.612251 CTCCTCCTCTCCCCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
391 392 2.015726 TCCTCCTCCTCTCCCCCTC 61.016 68.421 0.00 0.00 0.00 4.30
392 393 2.018086 CTCCTCCTCCTCTCCCCCT 61.018 68.421 0.00 0.00 0.00 4.79
393 394 2.612251 CTCCTCCTCCTCTCCCCC 59.388 72.222 0.00 0.00 0.00 5.40
394 395 2.612251 CCTCCTCCTCCTCTCCCC 59.388 72.222 0.00 0.00 0.00 4.81
395 396 2.123033 GCCTCCTCCTCCTCTCCC 60.123 72.222 0.00 0.00 0.00 4.30
396 397 1.152546 GAGCCTCCTCCTCCTCTCC 60.153 68.421 0.00 0.00 31.68 3.71
397 398 1.528309 CGAGCCTCCTCCTCCTCTC 60.528 68.421 0.00 0.00 34.49 3.20
398 399 1.994885 CTCGAGCCTCCTCCTCCTCT 61.995 65.000 0.00 0.00 34.49 3.69
399 400 1.528309 CTCGAGCCTCCTCCTCCTC 60.528 68.421 0.00 0.00 34.49 3.71
400 401 2.600731 CTCGAGCCTCCTCCTCCT 59.399 66.667 0.00 0.00 34.49 3.69
401 402 2.520741 CCTCGAGCCTCCTCCTCC 60.521 72.222 6.99 0.00 34.49 4.30
402 403 2.520741 CCCTCGAGCCTCCTCCTC 60.521 72.222 6.99 0.00 34.49 3.71
403 404 4.150454 CCCCTCGAGCCTCCTCCT 62.150 72.222 6.99 0.00 34.49 3.69
481 482 2.876645 GCAACTCGCGTCTCCTCG 60.877 66.667 5.77 0.00 0.00 4.63
482 483 0.737715 ATTGCAACTCGCGTCTCCTC 60.738 55.000 5.77 0.00 46.97 3.71
483 484 0.737715 GATTGCAACTCGCGTCTCCT 60.738 55.000 5.77 0.00 46.97 3.69
484 485 1.696832 GGATTGCAACTCGCGTCTCC 61.697 60.000 5.77 0.00 46.97 3.71
485 486 1.014044 TGGATTGCAACTCGCGTCTC 61.014 55.000 5.77 0.00 46.97 3.36
486 487 1.005037 TGGATTGCAACTCGCGTCT 60.005 52.632 5.77 0.00 46.97 4.18
487 488 1.014044 TCTGGATTGCAACTCGCGTC 61.014 55.000 5.77 0.00 46.97 5.19
488 489 0.391661 ATCTGGATTGCAACTCGCGT 60.392 50.000 5.77 0.00 46.97 6.01
489 490 0.302890 GATCTGGATTGCAACTCGCG 59.697 55.000 0.00 0.00 46.97 5.87
490 491 1.329906 CTGATCTGGATTGCAACTCGC 59.670 52.381 0.00 0.00 42.89 5.03
491 492 1.938577 CCTGATCTGGATTGCAACTCG 59.061 52.381 13.18 0.00 0.00 4.18
492 493 3.118482 TCTCCTGATCTGGATTGCAACTC 60.118 47.826 20.45 0.50 35.30 3.01
493 494 2.842496 TCTCCTGATCTGGATTGCAACT 59.158 45.455 20.45 0.00 35.30 3.16
494 495 3.204526 CTCTCCTGATCTGGATTGCAAC 58.795 50.000 20.45 0.00 35.30 4.17
495 496 2.421107 GCTCTCCTGATCTGGATTGCAA 60.421 50.000 26.28 0.00 35.66 4.08
496 497 1.140452 GCTCTCCTGATCTGGATTGCA 59.860 52.381 26.28 12.22 35.66 4.08
497 498 1.140452 TGCTCTCCTGATCTGGATTGC 59.860 52.381 25.35 25.35 35.30 3.56
498 499 3.557475 GGATGCTCTCCTGATCTGGATTG 60.557 52.174 20.45 16.25 41.29 2.67
499 500 2.638855 GGATGCTCTCCTGATCTGGATT 59.361 50.000 20.45 5.15 41.29 3.01
500 501 2.259012 GGATGCTCTCCTGATCTGGAT 58.741 52.381 20.45 6.59 41.29 3.41
501 502 1.714541 GGATGCTCTCCTGATCTGGA 58.285 55.000 19.23 19.23 41.29 3.86
502 503 0.317799 CGGATGCTCTCCTGATCTGG 59.682 60.000 12.30 12.30 42.47 3.86
503 504 0.319727 GCGGATGCTCTCCTGATCTG 60.320 60.000 0.00 0.00 42.47 2.90
504 505 1.470996 GGCGGATGCTCTCCTGATCT 61.471 60.000 0.00 0.00 42.47 2.75
505 506 1.005156 GGCGGATGCTCTCCTGATC 60.005 63.158 4.67 0.00 42.47 2.92
506 507 2.865598 CGGCGGATGCTCTCCTGAT 61.866 63.158 0.00 0.00 42.47 2.90
507 508 3.531207 CGGCGGATGCTCTCCTGA 61.531 66.667 0.00 0.00 42.47 3.86
508 509 3.842923 ACGGCGGATGCTCTCCTG 61.843 66.667 13.24 0.62 42.47 3.86
509 510 3.842923 CACGGCGGATGCTCTCCT 61.843 66.667 13.24 0.00 42.47 3.69
510 511 4.899239 CCACGGCGGATGCTCTCC 62.899 72.222 13.24 0.00 42.25 3.71
521 522 3.123620 CTCTTCAGCTGCCACGGC 61.124 66.667 9.47 0.00 42.35 5.68
522 523 2.435586 CCTCTTCAGCTGCCACGG 60.436 66.667 9.47 3.12 0.00 4.94
523 524 3.123620 GCCTCTTCAGCTGCCACG 61.124 66.667 9.47 0.00 0.00 4.94
524 525 3.123620 CGCCTCTTCAGCTGCCAC 61.124 66.667 9.47 0.00 0.00 5.01
525 526 4.399395 CCGCCTCTTCAGCTGCCA 62.399 66.667 9.47 0.00 0.00 4.92
533 534 3.785189 TTATCGCCGCCGCCTCTTC 62.785 63.158 0.00 0.00 0.00 2.87
534 535 3.845259 TTATCGCCGCCGCCTCTT 61.845 61.111 0.00 0.00 0.00 2.85
535 536 4.587189 GTTATCGCCGCCGCCTCT 62.587 66.667 0.00 0.00 0.00 3.69
536 537 4.884257 TGTTATCGCCGCCGCCTC 62.884 66.667 0.00 0.00 0.00 4.70
537 538 3.750373 ATTGTTATCGCCGCCGCCT 62.750 57.895 0.00 0.00 0.00 5.52
538 539 3.236618 GATTGTTATCGCCGCCGCC 62.237 63.158 0.00 0.00 0.00 6.13
539 540 2.248431 GATTGTTATCGCCGCCGC 59.752 61.111 0.00 0.00 0.00 6.53
540 541 1.885388 TGGATTGTTATCGCCGCCG 60.885 57.895 0.00 0.00 0.00 6.46
541 542 1.647084 GTGGATTGTTATCGCCGCC 59.353 57.895 0.00 0.00 0.00 6.13
542 543 1.149361 TCGTGGATTGTTATCGCCGC 61.149 55.000 0.00 0.00 0.00 6.53
543 544 0.852777 CTCGTGGATTGTTATCGCCG 59.147 55.000 0.00 0.00 0.00 6.46
544 545 2.128035 CTCTCGTGGATTGTTATCGCC 58.872 52.381 0.00 0.00 0.00 5.54
545 546 2.810650 ACTCTCGTGGATTGTTATCGC 58.189 47.619 0.00 0.00 0.00 4.58
546 547 4.174009 ACAACTCTCGTGGATTGTTATCG 58.826 43.478 2.66 0.00 31.27 2.92
547 548 5.229469 CGTACAACTCTCGTGGATTGTTATC 59.771 44.000 10.92 0.00 36.67 1.75
548 549 5.100259 CGTACAACTCTCGTGGATTGTTAT 58.900 41.667 10.92 0.00 36.67 1.89
549 550 4.478699 CGTACAACTCTCGTGGATTGTTA 58.521 43.478 10.92 0.00 36.67 2.41
550 551 3.314553 CGTACAACTCTCGTGGATTGTT 58.685 45.455 10.92 0.00 36.67 2.83
551 552 2.352421 CCGTACAACTCTCGTGGATTGT 60.352 50.000 10.61 10.61 38.72 2.71
552 553 2.259618 CCGTACAACTCTCGTGGATTG 58.740 52.381 0.00 1.64 0.00 2.67
553 554 1.203994 CCCGTACAACTCTCGTGGATT 59.796 52.381 0.00 0.00 0.00 3.01
554 555 0.815734 CCCGTACAACTCTCGTGGAT 59.184 55.000 0.00 0.00 0.00 3.41
555 556 0.538057 ACCCGTACAACTCTCGTGGA 60.538 55.000 0.00 0.00 0.00 4.02
556 557 0.316204 AACCCGTACAACTCTCGTGG 59.684 55.000 0.00 0.00 0.00 4.94
557 558 1.269413 ACAACCCGTACAACTCTCGTG 60.269 52.381 0.00 0.00 0.00 4.35
558 559 1.000938 GACAACCCGTACAACTCTCGT 60.001 52.381 0.00 0.00 0.00 4.18
559 560 1.268899 AGACAACCCGTACAACTCTCG 59.731 52.381 0.00 0.00 0.00 4.04
560 561 2.673833 CAGACAACCCGTACAACTCTC 58.326 52.381 0.00 0.00 0.00 3.20
561 562 1.270147 GCAGACAACCCGTACAACTCT 60.270 52.381 0.00 0.00 0.00 3.24
562 563 1.145803 GCAGACAACCCGTACAACTC 58.854 55.000 0.00 0.00 0.00 3.01
563 564 0.756903 AGCAGACAACCCGTACAACT 59.243 50.000 0.00 0.00 0.00 3.16
564 565 2.334838 CTAGCAGACAACCCGTACAAC 58.665 52.381 0.00 0.00 0.00 3.32
565 566 1.274167 CCTAGCAGACAACCCGTACAA 59.726 52.381 0.00 0.00 0.00 2.41
566 567 0.892755 CCTAGCAGACAACCCGTACA 59.107 55.000 0.00 0.00 0.00 2.90
567 568 0.893447 ACCTAGCAGACAACCCGTAC 59.107 55.000 0.00 0.00 0.00 3.67
568 569 1.636148 AACCTAGCAGACAACCCGTA 58.364 50.000 0.00 0.00 0.00 4.02
569 570 0.763035 AAACCTAGCAGACAACCCGT 59.237 50.000 0.00 0.00 0.00 5.28
570 571 2.754946 TAAACCTAGCAGACAACCCG 57.245 50.000 0.00 0.00 0.00 5.28
571 572 4.575236 GCTTATAAACCTAGCAGACAACCC 59.425 45.833 0.00 0.00 35.05 4.11
572 573 5.294552 CAGCTTATAAACCTAGCAGACAACC 59.705 44.000 0.00 0.00 37.37 3.77
573 574 6.106673 TCAGCTTATAAACCTAGCAGACAAC 58.893 40.000 0.00 0.00 37.37 3.32
574 575 6.294361 TCAGCTTATAAACCTAGCAGACAA 57.706 37.500 0.00 0.00 37.37 3.18
575 576 5.932619 TCAGCTTATAAACCTAGCAGACA 57.067 39.130 0.00 0.00 37.37 3.41
576 577 7.495934 TCATTTCAGCTTATAAACCTAGCAGAC 59.504 37.037 0.00 0.00 37.37 3.51
577 578 7.495934 GTCATTTCAGCTTATAAACCTAGCAGA 59.504 37.037 0.00 0.00 37.37 4.26
578 579 7.280876 TGTCATTTCAGCTTATAAACCTAGCAG 59.719 37.037 0.00 0.00 37.37 4.24
579 580 7.109501 TGTCATTTCAGCTTATAAACCTAGCA 58.890 34.615 0.00 0.00 37.37 3.49
584 585 7.196331 GGTCATGTCATTTCAGCTTATAAACC 58.804 38.462 0.00 0.00 0.00 3.27
616 617 1.210870 TCACGAGTAAAACGCACCAC 58.789 50.000 0.00 0.00 0.00 4.16
632 633 2.484264 CAGAATTCGTCCAGGGTTTCAC 59.516 50.000 0.00 0.00 0.00 3.18
702 703 0.931005 GCAGTGTATAGCGGAACAGC 59.069 55.000 0.00 0.00 37.41 4.40
717 718 1.067283 CAACAGGACTCGAGATGCAGT 60.067 52.381 21.68 8.91 0.00 4.40
738 739 6.470877 GTGAAGAAAAACGCATAAACAGAACA 59.529 34.615 0.00 0.00 0.00 3.18
799 802 2.662113 AGATAGGATAGGAGGATGGCCA 59.338 50.000 8.56 8.56 36.29 5.36
800 803 3.413105 AGATAGGATAGGAGGATGGCC 57.587 52.381 0.00 0.00 0.00 5.36
977 989 2.015090 GATCGGGTACGCGCTAAGC 61.015 63.158 25.81 9.55 40.69 3.09
1058 1345 0.036010 GTGGGGAGTGAGTGATGGTG 60.036 60.000 0.00 0.00 0.00 4.17
1191 1484 2.032071 GGGTCGGTGGTGTTGAGG 59.968 66.667 0.00 0.00 0.00 3.86
1340 1636 2.770475 GGAAGGGAGGGAGGGAGC 60.770 72.222 0.00 0.00 0.00 4.70
1342 1638 1.460839 TTGAGGAAGGGAGGGAGGGA 61.461 60.000 0.00 0.00 0.00 4.20
1559 1855 6.924060 TGTAAACTGTTTCTCTTCTGCTCTAC 59.076 38.462 9.38 0.00 0.00 2.59
1561 1857 5.918608 TGTAAACTGTTTCTCTTCTGCTCT 58.081 37.500 9.38 0.00 0.00 4.09
1562 1858 5.755861 ACTGTAAACTGTTTCTCTTCTGCTC 59.244 40.000 9.38 0.00 0.00 4.26
1563 1859 5.675538 ACTGTAAACTGTTTCTCTTCTGCT 58.324 37.500 9.38 0.00 0.00 4.24
1564 1860 5.993106 ACTGTAAACTGTTTCTCTTCTGC 57.007 39.130 9.38 0.00 0.00 4.26
1640 1944 5.047590 CACCCCGCACAGATACATTACTATA 60.048 44.000 0.00 0.00 0.00 1.31
1658 1962 4.602259 ACACACGCAGACACCCCG 62.602 66.667 0.00 0.00 0.00 5.73
1661 1965 0.810031 ACTCAACACACGCAGACACC 60.810 55.000 0.00 0.00 0.00 4.16
1669 1973 0.232303 GGAAAGCGACTCAACACACG 59.768 55.000 0.00 0.00 0.00 4.49
1749 2053 2.507324 GAGAGGTCGAGCGCCAAC 60.507 66.667 14.88 0.00 0.00 3.77
1767 2071 2.338785 GCTTCAGCTTCAGGCACCC 61.339 63.158 0.00 0.00 44.79 4.61
1791 2095 6.476380 GCATCTGATCTGAAACACAACAAAAA 59.524 34.615 6.37 0.00 0.00 1.94
1799 2103 3.603532 TCCTGCATCTGATCTGAAACAC 58.396 45.455 6.37 0.00 0.00 3.32
2045 2357 4.965119 AAATGGCGGTACAAATTCTCTC 57.035 40.909 0.00 0.00 0.00 3.20
2046 2358 4.618227 GCAAAATGGCGGTACAAATTCTCT 60.618 41.667 0.00 0.00 0.00 3.10
2194 2580 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2196 2582 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2422 3006 2.053627 GTTTTGTTGCCTTGCTCGATG 58.946 47.619 0.00 0.00 0.00 3.84
2432 3016 6.198216 CCATGCGTATTATTAGTTTTGTTGCC 59.802 38.462 0.00 0.00 0.00 4.52
2446 3030 6.652481 GGTAGTCTACTAGTCCATGCGTATTA 59.348 42.308 9.85 0.00 0.00 0.98
2540 3222 2.528127 TTCAGCCCCGGGAACTCA 60.528 61.111 26.32 1.36 0.00 3.41
2555 3237 0.739813 CCACGTGGAACCCGATCTTC 60.740 60.000 31.31 0.00 37.39 2.87
2717 3405 4.373116 TTGGAGTCGAGGCGCCAC 62.373 66.667 31.54 23.03 38.04 5.01
2885 3573 4.060038 AGCATTACCAGTACTCCGATTG 57.940 45.455 0.00 0.00 0.00 2.67
2886 3574 4.894114 AGTAGCATTACCAGTACTCCGATT 59.106 41.667 0.00 0.00 0.00 3.34
2887 3575 4.471548 AGTAGCATTACCAGTACTCCGAT 58.528 43.478 0.00 0.00 0.00 4.18
2898 3587 0.031721 AGCCGCGTAGTAGCATTACC 59.968 55.000 4.92 0.00 36.85 2.85
2940 3629 2.674177 CGTACACTCCCAATGACTGACC 60.674 54.545 0.00 0.00 0.00 4.02
2971 3668 5.060569 CCGATACAGTTTACAACGACTCAAG 59.939 44.000 0.00 0.00 36.23 3.02
2998 3695 3.816090 ACCACACACACCCCCACC 61.816 66.667 0.00 0.00 0.00 4.61
3000 3697 3.018193 ACACCACACACACCCCCA 61.018 61.111 0.00 0.00 0.00 4.96
3002 3699 2.590575 CGACACCACACACACCCC 60.591 66.667 0.00 0.00 0.00 4.95
3003 3700 2.590575 CCGACACCACACACACCC 60.591 66.667 0.00 0.00 0.00 4.61
3004 3701 2.177580 CACCGACACCACACACACC 61.178 63.158 0.00 0.00 0.00 4.16
3005 3702 2.819552 GCACCGACACCACACACAC 61.820 63.158 0.00 0.00 0.00 3.82
3006 3703 2.512745 GCACCGACACCACACACA 60.513 61.111 0.00 0.00 0.00 3.72
3007 3704 3.636043 CGCACCGACACCACACAC 61.636 66.667 0.00 0.00 0.00 3.82
3008 3705 4.150203 ACGCACCGACACCACACA 62.150 61.111 0.00 0.00 0.00 3.72
3009 3706 3.335534 GACGCACCGACACCACAC 61.336 66.667 0.00 0.00 0.00 3.82
3010 3707 2.581208 AAAGACGCACCGACACCACA 62.581 55.000 0.00 0.00 0.00 4.17
3075 3796 2.604914 GCCAATACACGACTCATCACAG 59.395 50.000 0.00 0.00 0.00 3.66
3248 3974 6.315393 ACATAATAAAAGGAGGCACAAGTACG 59.685 38.462 0.00 0.00 0.00 3.67
3305 4037 8.641541 TCAAGATTAAATGCTTTTTCCTTCAGT 58.358 29.630 2.59 0.00 0.00 3.41
3306 4038 9.480053 TTCAAGATTAAATGCTTTTTCCTTCAG 57.520 29.630 2.59 0.00 0.00 3.02
3308 4040 9.696917 TCTTCAAGATTAAATGCTTTTTCCTTC 57.303 29.630 2.59 0.00 0.00 3.46
3311 4043 8.438513 GCTTCTTCAAGATTAAATGCTTTTTCC 58.561 33.333 2.59 0.00 0.00 3.13
3313 4045 8.891671 TGCTTCTTCAAGATTAAATGCTTTTT 57.108 26.923 2.59 0.00 0.00 1.94
3315 4047 8.768019 GTTTGCTTCTTCAAGATTAAATGCTTT 58.232 29.630 0.00 0.00 0.00 3.51
3316 4048 7.386025 GGTTTGCTTCTTCAAGATTAAATGCTT 59.614 33.333 0.00 0.00 0.00 3.91
3317 4049 6.870439 GGTTTGCTTCTTCAAGATTAAATGCT 59.130 34.615 0.00 0.00 0.00 3.79
3318 4050 6.091305 GGGTTTGCTTCTTCAAGATTAAATGC 59.909 38.462 0.00 0.00 0.00 3.56
3319 4051 7.153985 TGGGTTTGCTTCTTCAAGATTAAATG 58.846 34.615 0.00 0.00 0.00 2.32
3320 4052 7.301868 TGGGTTTGCTTCTTCAAGATTAAAT 57.698 32.000 0.00 0.00 0.00 1.40
3321 4053 6.723298 TGGGTTTGCTTCTTCAAGATTAAA 57.277 33.333 0.00 0.00 0.00 1.52
3322 4054 6.323739 AGTTGGGTTTGCTTCTTCAAGATTAA 59.676 34.615 0.00 0.00 0.00 1.40
3323 4055 5.833131 AGTTGGGTTTGCTTCTTCAAGATTA 59.167 36.000 0.00 0.00 0.00 1.75
3324 4056 4.651045 AGTTGGGTTTGCTTCTTCAAGATT 59.349 37.500 0.00 0.00 0.00 2.40
3325 4057 4.038402 CAGTTGGGTTTGCTTCTTCAAGAT 59.962 41.667 0.00 0.00 0.00 2.40
3326 4058 3.381272 CAGTTGGGTTTGCTTCTTCAAGA 59.619 43.478 0.00 0.00 0.00 3.02
3327 4059 3.709987 CAGTTGGGTTTGCTTCTTCAAG 58.290 45.455 0.00 0.00 0.00 3.02
3328 4060 2.159114 GCAGTTGGGTTTGCTTCTTCAA 60.159 45.455 0.00 0.00 37.35 2.69
3329 4061 1.408702 GCAGTTGGGTTTGCTTCTTCA 59.591 47.619 0.00 0.00 37.35 3.02
3330 4062 1.408702 TGCAGTTGGGTTTGCTTCTTC 59.591 47.619 0.00 0.00 40.87 2.87
3331 4063 1.410153 CTGCAGTTGGGTTTGCTTCTT 59.590 47.619 5.25 0.00 40.87 2.52
3332 4064 1.035139 CTGCAGTTGGGTTTGCTTCT 58.965 50.000 5.25 0.00 40.87 2.85
3333 4065 1.000938 CTCTGCAGTTGGGTTTGCTTC 60.001 52.381 14.67 0.00 40.87 3.86
3334 4066 1.035139 CTCTGCAGTTGGGTTTGCTT 58.965 50.000 14.67 0.00 40.87 3.91
3335 4067 0.183492 TCTCTGCAGTTGGGTTTGCT 59.817 50.000 14.67 0.00 40.87 3.91
3336 4068 1.000938 CTTCTCTGCAGTTGGGTTTGC 60.001 52.381 14.67 0.00 40.67 3.68
3337 4069 1.000938 GCTTCTCTGCAGTTGGGTTTG 60.001 52.381 14.67 0.00 0.00 2.93
3338 4070 1.322442 GCTTCTCTGCAGTTGGGTTT 58.678 50.000 14.67 0.00 0.00 3.27
3339 4071 0.183492 TGCTTCTCTGCAGTTGGGTT 59.817 50.000 14.67 0.00 38.12 4.11
3340 4072 0.403271 ATGCTTCTCTGCAGTTGGGT 59.597 50.000 14.67 0.00 46.71 4.51
3341 4073 1.093159 GATGCTTCTCTGCAGTTGGG 58.907 55.000 14.67 4.51 46.71 4.12
3342 4074 1.817357 TGATGCTTCTCTGCAGTTGG 58.183 50.000 14.67 5.72 46.71 3.77
3343 4075 3.909776 TTTGATGCTTCTCTGCAGTTG 57.090 42.857 14.67 8.33 46.71 3.16
3346 4078 3.192844 ACCATTTTGATGCTTCTCTGCAG 59.807 43.478 7.63 7.63 46.71 4.41
3350 4082 4.410099 TCCAACCATTTTGATGCTTCTCT 58.590 39.130 0.88 0.00 0.00 3.10
3353 4085 6.427547 TCAAATTCCAACCATTTTGATGCTTC 59.572 34.615 0.00 0.00 34.20 3.86
3394 4135 2.037144 TCCCGGAACTATGAGCTTACC 58.963 52.381 0.73 0.00 0.00 2.85
3395 4136 2.429610 TGTCCCGGAACTATGAGCTTAC 59.570 50.000 0.73 0.00 0.00 2.34
3399 4140 0.530870 GCTGTCCCGGAACTATGAGC 60.531 60.000 0.73 0.00 0.00 4.26
3418 4159 1.676746 TGCTGGAGCCTAGTACTACG 58.323 55.000 0.00 0.00 41.18 3.51
3419 4160 4.434520 CTTTTGCTGGAGCCTAGTACTAC 58.565 47.826 0.00 0.00 41.18 2.73
3420 4161 3.451178 CCTTTTGCTGGAGCCTAGTACTA 59.549 47.826 1.89 1.89 41.18 1.82
3421 4162 2.237392 CCTTTTGCTGGAGCCTAGTACT 59.763 50.000 0.00 0.00 41.18 2.73
3461 4209 2.202932 CGCGGGAACAGATCTGGG 60.203 66.667 26.08 10.85 34.19 4.45
3533 4289 2.681976 GCTTAGGCAAGGAATCTGCAGA 60.682 50.000 20.79 20.79 38.54 4.26
3558 4314 0.589729 GCAACCAATCATGCGCTACG 60.590 55.000 9.73 0.00 32.17 3.51
3564 4320 0.814457 TTACCGGCAACCAATCATGC 59.186 50.000 0.00 0.00 41.82 4.06
3623 4379 3.635836 GTGGTAGTAGCTTTATCGAGGGT 59.364 47.826 0.00 0.00 0.00 4.34
3679 4438 1.544691 ACGTCGAACTGGCAAGACTAT 59.455 47.619 0.00 0.00 0.00 2.12
3680 4439 0.956633 ACGTCGAACTGGCAAGACTA 59.043 50.000 0.00 0.00 0.00 2.59
3681 4440 0.597637 CACGTCGAACTGGCAAGACT 60.598 55.000 0.00 0.00 0.00 3.24
3685 4444 0.935831 CGTACACGTCGAACTGGCAA 60.936 55.000 0.00 0.00 34.11 4.52
3717 4476 1.657822 GATTTCTCTCCGGACAAGGC 58.342 55.000 0.00 0.00 0.00 4.35
3723 4482 1.760875 CGGGGGATTTCTCTCCGGA 60.761 63.158 2.93 2.93 43.82 5.14
3750 4509 1.845809 CGCACTGTTCTGCTTGACCC 61.846 60.000 0.00 0.00 34.77 4.46
3772 4531 1.756375 GCTCTTGTATCGCTGCGTGG 61.756 60.000 22.48 7.06 0.00 4.94
3844 4606 1.594293 CGCGGTACAGCTAATGGGG 60.594 63.158 16.02 0.00 34.40 4.96
3881 4643 4.807631 ATCGCCAGCATGCCAGCA 62.808 61.111 24.39 14.37 36.85 4.41
3885 4657 4.575973 AGGGATCGCCAGCATGCC 62.576 66.667 15.66 0.00 35.15 4.40
3935 4707 1.619363 CTGGGGTGGGGATCTGGAA 60.619 63.158 0.00 0.00 0.00 3.53
3963 4736 4.058817 CCCGTGCAGGATAAGAATAAGAC 58.941 47.826 8.24 0.00 45.00 3.01
4012 4790 0.174845 CCTACGGTGCCGATTCTCAA 59.825 55.000 18.16 0.00 42.83 3.02
4014 4792 1.591863 GCCTACGGTGCCGATTCTC 60.592 63.158 18.16 0.00 42.83 2.87
4031 4809 0.036010 TACTCCTGGCTCAGCTTTGC 60.036 55.000 0.00 0.00 0.00 3.68
4124 4909 3.311322 GGCGGATATGTTTCGATTTGACA 59.689 43.478 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.