Multiple sequence alignment - TraesCS1D01G214900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G214900 chr1D 100.000 3284 0 0 1 3284 300027314 300024031 0.000000e+00 6065.0
1 TraesCS1D01G214900 chr1A 93.470 2236 90 23 132 2348 374279832 374277634 0.000000e+00 3269.0
2 TraesCS1D01G214900 chr1A 93.939 132 5 1 1 129 374279997 374279866 2.590000e-46 196.0
3 TraesCS1D01G214900 chr1A 83.660 153 13 10 3125 3276 374276814 374276673 2.060000e-27 134.0
4 TraesCS1D01G214900 chr1A 82.090 134 10 4 2636 2768 374276925 374276805 5.800000e-18 102.0
5 TraesCS1D01G214900 chr1B 93.870 2137 87 18 132 2249 404899449 404897338 0.000000e+00 3181.0
6 TraesCS1D01G214900 chr1B 90.948 232 18 3 2294 2523 404897343 404897113 3.180000e-80 309.0
7 TraesCS1D01G214900 chr1B 86.099 223 16 6 2555 2768 404897109 404896893 3.300000e-55 226.0
8 TraesCS1D01G214900 chr1B 93.182 132 6 2 1 129 404899613 404899482 1.200000e-44 191.0
9 TraesCS1D01G214900 chr1B 89.262 149 9 4 3137 3284 404896899 404896757 2.600000e-41 180.0
10 TraesCS1D01G214900 chr2D 98.023 354 6 1 2772 3124 364970853 364971206 6.020000e-172 614.0
11 TraesCS1D01G214900 chr2D 97.500 360 8 1 2769 3127 600431518 600431877 6.020000e-172 614.0
12 TraesCS1D01G214900 chr2D 97.479 357 8 1 2769 3124 374071011 374070655 2.800000e-170 608.0
13 TraesCS1D01G214900 chr2D 95.801 381 5 6 2756 3128 121363460 121363837 3.620000e-169 604.0
14 TraesCS1D01G214900 chr2D 96.639 357 10 2 2769 3124 506401239 506400884 2.820000e-165 592.0
15 TraesCS1D01G214900 chr2D 92.246 374 22 6 2769 3137 288223330 288223701 1.040000e-144 523.0
16 TraesCS1D01G214900 chr2D 89.062 64 7 0 1702 1765 524932003 524931940 2.720000e-11 80.5
17 TraesCS1D01G214900 chr3D 94.167 360 16 4 2769 3124 4502175 4501817 8.010000e-151 544.0
18 TraesCS1D01G214900 chr5D 93.557 357 18 4 2769 3121 313367812 313368167 8.070000e-146 527.0
19 TraesCS1D01G214900 chr5D 92.837 363 17 6 2769 3125 274568773 274569132 4.860000e-143 518.0
20 TraesCS1D01G214900 chr2B 90.625 64 6 0 1702 1765 620861196 620861133 5.840000e-13 86.1
21 TraesCS1D01G214900 chr2A 87.500 64 8 0 1702 1765 670314599 670314536 1.260000e-09 75.0
22 TraesCS1D01G214900 chr6D 94.444 36 2 0 1738 1773 464674913 464674878 4.580000e-04 56.5
23 TraesCS1D01G214900 chr6B 94.444 36 2 0 1738 1773 708516288 708516253 4.580000e-04 56.5
24 TraesCS1D01G214900 chr6A 94.444 36 2 0 1738 1773 611197770 611197805 4.580000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G214900 chr1D 300024031 300027314 3283 True 6065.00 6065 100.00000 1 3284 1 chr1D.!!$R1 3283
1 TraesCS1D01G214900 chr1A 374276673 374279997 3324 True 925.25 3269 88.28975 1 3276 4 chr1A.!!$R1 3275
2 TraesCS1D01G214900 chr1B 404896757 404899613 2856 True 817.40 3181 90.67220 1 3284 5 chr1B.!!$R1 3283

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 169 0.671796 TGACGACGGAGACATGTGTT 59.328 50.0 1.15 0.0 0.0 3.32 F
1026 1086 0.322456 TTGGGATTGGTCTTGCTCGG 60.322 55.0 0.00 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1262 1322 0.251634 GCCTACCTTGCAGCTTCTCT 59.748 55.0 0.0 0.0 0.0 3.10 R
2932 3484 0.253044 ACGCTGACTTGGGCACATAT 59.747 50.0 0.0 0.0 0.0 1.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.777384 TGTGCAGCTGTGTACAGG 57.223 55.556 16.64 0.00 43.53 4.00
113 117 8.239998 TCCCAAAAACAAAAGCAAAATTGTAAG 58.760 29.630 0.00 0.00 38.75 2.34
115 119 7.754475 CCAAAAACAAAAGCAAAATTGTAAGCT 59.246 29.630 0.00 0.00 38.75 3.74
129 133 1.132643 GTAAGCTGACGACGGAGACAT 59.867 52.381 0.00 0.00 0.00 3.06
134 169 0.671796 TGACGACGGAGACATGTGTT 59.328 50.000 1.15 0.00 0.00 3.32
146 181 1.952990 ACATGTGTTGCCAAATCGTGA 59.047 42.857 0.00 0.00 0.00 4.35
161 196 5.344743 AATCGTGACACCAAGATAGACAT 57.655 39.130 0.00 0.00 39.91 3.06
173 208 6.098838 ACCAAGATAGACATACATTCAGAGCA 59.901 38.462 0.00 0.00 0.00 4.26
176 211 8.710551 CAAGATAGACATACATTCAGAGCAATC 58.289 37.037 0.00 0.00 0.00 2.67
284 319 6.449635 TTGATGAGGCCACATAACATAAAC 57.550 37.500 16.23 1.64 0.00 2.01
285 320 4.887071 TGATGAGGCCACATAACATAAACC 59.113 41.667 16.23 0.92 0.00 3.27
317 352 9.023962 TGATGGTCAAATCTTTATAAAACAGCT 57.976 29.630 0.00 0.00 0.00 4.24
318 353 9.860898 GATGGTCAAATCTTTATAAAACAGCTT 57.139 29.630 0.00 0.00 0.00 3.74
470 505 4.446413 GGGATCGTGACGGGCGTT 62.446 66.667 4.70 0.00 0.00 4.84
544 579 2.819608 TGAAGATCTTCCAAAAAGCCGG 59.180 45.455 28.40 0.00 38.77 6.13
579 614 2.008242 TGCCAGTTTTACAGCCCAAT 57.992 45.000 0.00 0.00 0.00 3.16
587 622 2.339728 TTACAGCCCAATTTTTCGCG 57.660 45.000 0.00 0.00 0.00 5.87
676 716 3.738282 TGCAACGTGAAATGCCATAAAAC 59.262 39.130 7.44 0.00 41.87 2.43
693 733 3.692791 AAACTCTGCCTTGTTTTCGAC 57.307 42.857 0.00 0.00 33.21 4.20
709 750 2.282391 ACTGCTCGGCCATTTGCA 60.282 55.556 2.24 6.16 43.89 4.08
732 773 2.289756 TGCTGCGTATTTAAGTGTGGGA 60.290 45.455 0.00 0.00 0.00 4.37
735 776 2.680841 TGCGTATTTAAGTGTGGGATGC 59.319 45.455 0.00 0.00 0.00 3.91
779 829 2.373502 CTCCCCACTTGTTTCTTCCTCT 59.626 50.000 0.00 0.00 0.00 3.69
860 910 2.292192 CCCACTCTCTCTTCCTCTTCCT 60.292 54.545 0.00 0.00 0.00 3.36
881 931 1.346068 ACCTCTCACACTTCTTCTGCC 59.654 52.381 0.00 0.00 0.00 4.85
1002 1060 2.044650 TCTGCTGCTCCATTGCCC 60.045 61.111 0.00 0.00 0.00 5.36
1008 1066 0.896940 CTGCTCCATTGCCCTGTGTT 60.897 55.000 0.00 0.00 0.00 3.32
1026 1086 0.322456 TTGGGATTGGTCTTGCTCGG 60.322 55.000 0.00 0.00 0.00 4.63
1029 1089 1.087501 GGATTGGTCTTGCTCGGTTC 58.912 55.000 0.00 0.00 0.00 3.62
1262 1322 3.147595 CCTGCGTGAGGATCCCGA 61.148 66.667 8.55 0.00 46.33 5.14
1488 1548 1.226603 CACCGTCTCCGATTCGACC 60.227 63.158 7.83 0.00 35.63 4.79
1608 1668 2.923229 AAAACAACGACGGCGCCAAC 62.923 55.000 28.98 18.23 42.48 3.77
2119 2179 0.538584 ATCGCCAGATGTGCTCAGAA 59.461 50.000 0.00 0.00 35.40 3.02
2209 2269 2.158711 TCATCCATGCAAGATCCAGGTC 60.159 50.000 0.00 0.00 0.00 3.85
2213 2273 0.467384 ATGCAAGATCCAGGTCGAGG 59.533 55.000 0.00 0.00 0.00 4.63
2219 2279 0.741915 GATCCAGGTCGAGGACAGTC 59.258 60.000 0.00 0.00 38.13 3.51
2255 2315 7.940178 AAATCTCGGTTTTTCGCTTATTTTT 57.060 28.000 0.00 0.00 0.00 1.94
2256 2316 7.562640 AATCTCGGTTTTTCGCTTATTTTTC 57.437 32.000 0.00 0.00 0.00 2.29
2257 2317 5.454520 TCTCGGTTTTTCGCTTATTTTTCC 58.545 37.500 0.00 0.00 0.00 3.13
2258 2318 4.220572 TCGGTTTTTCGCTTATTTTTCCG 58.779 39.130 0.00 0.00 36.30 4.30
2259 2319 3.362534 CGGTTTTTCGCTTATTTTTCCGG 59.637 43.478 0.00 0.00 0.00 5.14
2345 2417 5.980116 CCACTGTATCTACATGTTACTCTGC 59.020 44.000 2.30 0.00 35.36 4.26
2348 2420 8.406297 CACTGTATCTACATGTTACTCTGCTTA 58.594 37.037 2.30 0.00 35.36 3.09
2349 2421 8.625651 ACTGTATCTACATGTTACTCTGCTTAG 58.374 37.037 2.30 0.00 35.36 2.18
2355 2427 9.204570 TCTACATGTTACTCTGCTTAGTTTTTC 57.795 33.333 2.30 0.00 0.00 2.29
2358 2430 8.560374 ACATGTTACTCTGCTTAGTTTTTCTTC 58.440 33.333 0.00 0.00 0.00 2.87
2361 2433 9.998106 TGTTACTCTGCTTAGTTTTTCTTCTAT 57.002 29.630 0.00 0.00 0.00 1.98
2383 2908 5.557576 TCATATCTCTCACTGGGATTTGG 57.442 43.478 0.00 0.00 0.00 3.28
2422 2947 4.905269 ACGCTTTGTTGAACTTTACAGTC 58.095 39.130 0.00 0.00 30.45 3.51
2423 2948 4.201881 ACGCTTTGTTGAACTTTACAGTCC 60.202 41.667 0.00 0.00 30.45 3.85
2446 2971 3.319972 TCGTAACAGCTCACCACTTAAGT 59.680 43.478 1.12 1.12 0.00 2.24
2468 2993 0.455633 GCGAAACTGCCAATGCTCTG 60.456 55.000 0.00 0.00 38.71 3.35
2476 3001 3.393472 CCAATGCTCTGGCTCCTAC 57.607 57.895 0.00 0.00 39.59 3.18
2496 3021 6.495181 TCCTACAATTTGCTGGGATAAAACAA 59.505 34.615 0.00 0.00 0.00 2.83
2505 3030 6.397272 TGCTGGGATAAAACAACAATTGATC 58.603 36.000 13.59 2.49 0.00 2.92
2515 3040 7.481275 AAACAACAATTGATCCATTGAACAC 57.519 32.000 22.58 0.00 0.00 3.32
2525 3050 8.408043 TTGATCCATTGAACACTTGAATAGTT 57.592 30.769 0.00 0.00 33.85 2.24
2527 3052 8.859090 TGATCCATTGAACACTTGAATAGTTTT 58.141 29.630 0.00 0.00 33.85 2.43
2531 3056 9.097257 CCATTGAACACTTGAATAGTTTTGTTT 57.903 29.630 0.00 0.00 33.85 2.83
2534 3059 9.482627 TTGAACACTTGAATAGTTTTGTTTTGT 57.517 25.926 0.00 0.00 33.85 2.83
2535 3060 9.482627 TGAACACTTGAATAGTTTTGTTTTGTT 57.517 25.926 0.00 0.00 33.85 2.83
2541 3066 9.971744 CTTGAATAGTTTTGTTTTGTTTTGAGG 57.028 29.630 0.00 0.00 0.00 3.86
2542 3067 8.485976 TGAATAGTTTTGTTTTGTTTTGAGGG 57.514 30.769 0.00 0.00 0.00 4.30
2543 3068 8.097662 TGAATAGTTTTGTTTTGTTTTGAGGGT 58.902 29.630 0.00 0.00 0.00 4.34
2544 3069 9.589111 GAATAGTTTTGTTTTGTTTTGAGGGTA 57.411 29.630 0.00 0.00 0.00 3.69
2545 3070 9.945904 AATAGTTTTGTTTTGTTTTGAGGGTAA 57.054 25.926 0.00 0.00 0.00 2.85
2546 3071 7.661127 AGTTTTGTTTTGTTTTGAGGGTAAC 57.339 32.000 0.00 0.00 0.00 2.50
2547 3072 7.217906 AGTTTTGTTTTGTTTTGAGGGTAACA 58.782 30.769 0.00 0.00 39.74 2.41
2548 3073 7.171848 AGTTTTGTTTTGTTTTGAGGGTAACAC 59.828 33.333 0.00 0.00 34.25 3.32
2549 3074 5.986501 TGTTTTGTTTTGAGGGTAACACT 57.013 34.783 0.00 0.00 34.25 3.55
2550 3075 6.347859 TGTTTTGTTTTGAGGGTAACACTT 57.652 33.333 0.00 0.00 34.25 3.16
2559 3084 9.059260 GTTTTGAGGGTAACACTTGAATAGTTA 57.941 33.333 0.00 0.00 33.85 2.24
2560 3085 8.842358 TTTGAGGGTAACACTTGAATAGTTAG 57.158 34.615 0.00 0.00 33.85 2.34
2589 3114 2.869233 ATTGTTGTTGGTCACAGTGC 57.131 45.000 0.00 0.00 36.48 4.40
2632 3158 3.733960 GTTCGGTTTCAGCGGCCC 61.734 66.667 0.00 0.00 39.89 5.80
2709 3261 0.664767 GCGACAGAGTGTGTGAGTCC 60.665 60.000 0.00 0.00 40.56 3.85
2722 3274 0.179040 TGAGTCCGTTGGTTGGTTCC 60.179 55.000 0.00 0.00 0.00 3.62
2765 3317 0.179059 TTCTTGGACGCAACAGCTGA 60.179 50.000 23.35 0.00 0.00 4.26
2766 3318 0.035317 TCTTGGACGCAACAGCTGAT 59.965 50.000 23.35 5.41 0.00 2.90
2767 3319 0.167470 CTTGGACGCAACAGCTGATG 59.833 55.000 23.35 20.89 0.00 3.07
2768 3320 1.236616 TTGGACGCAACAGCTGATGG 61.237 55.000 23.35 14.95 0.00 3.51
2769 3321 2.401766 GGACGCAACAGCTGATGGG 61.402 63.158 30.94 30.94 36.94 4.00
2770 3322 3.044059 GACGCAACAGCTGATGGGC 62.044 63.158 32.00 23.08 34.85 5.36
2771 3323 3.057548 CGCAACAGCTGATGGGCA 61.058 61.111 24.41 0.00 34.13 5.36
2772 3324 2.628696 CGCAACAGCTGATGGGCAA 61.629 57.895 24.41 0.00 34.13 4.52
2773 3325 1.667151 GCAACAGCTGATGGGCAAA 59.333 52.632 23.35 0.00 34.50 3.68
2774 3326 0.248289 GCAACAGCTGATGGGCAAAT 59.752 50.000 23.35 0.00 34.50 2.32
2775 3327 1.338389 GCAACAGCTGATGGGCAAATT 60.338 47.619 23.35 0.00 34.50 1.82
2776 3328 2.872842 GCAACAGCTGATGGGCAAATTT 60.873 45.455 23.35 0.00 34.50 1.82
2777 3329 2.739913 CAACAGCTGATGGGCAAATTTG 59.260 45.455 23.35 14.03 34.17 2.32
2778 3330 2.250031 ACAGCTGATGGGCAAATTTGA 58.750 42.857 23.35 1.15 34.17 2.69
2779 3331 2.028748 ACAGCTGATGGGCAAATTTGAC 60.029 45.455 23.35 19.34 34.70 3.18
2780 3332 2.028839 CAGCTGATGGGCAAATTTGACA 60.029 45.455 25.05 19.67 38.18 3.58
2781 3333 2.633967 AGCTGATGGGCAAATTTGACAA 59.366 40.909 25.05 15.50 38.18 3.18
2782 3334 3.262405 AGCTGATGGGCAAATTTGACAAT 59.738 39.130 25.05 19.94 38.18 2.71
2783 3335 4.004982 GCTGATGGGCAAATTTGACAATT 58.995 39.130 25.05 9.17 38.18 2.32
2784 3336 4.456566 GCTGATGGGCAAATTTGACAATTT 59.543 37.500 25.05 6.66 42.37 1.82
2785 3337 5.048573 GCTGATGGGCAAATTTGACAATTTT 60.049 36.000 25.05 0.00 40.09 1.82
2786 3338 6.315091 TGATGGGCAAATTTGACAATTTTG 57.685 33.333 25.05 22.48 40.09 2.44
2787 3339 6.060136 TGATGGGCAAATTTGACAATTTTGA 58.940 32.000 27.56 14.61 40.09 2.69
2788 3340 5.747951 TGGGCAAATTTGACAATTTTGAC 57.252 34.783 27.56 25.82 40.09 3.18
2789 3341 4.578105 TGGGCAAATTTGACAATTTTGACC 59.422 37.500 34.06 34.06 40.09 4.02
2790 3342 4.821260 GGGCAAATTTGACAATTTTGACCT 59.179 37.500 33.72 5.89 40.09 3.85
2791 3343 5.994668 GGGCAAATTTGACAATTTTGACCTA 59.005 36.000 33.72 3.60 40.09 3.08
2792 3344 6.654582 GGGCAAATTTGACAATTTTGACCTAT 59.345 34.615 33.72 5.55 40.09 2.57
2793 3345 7.821846 GGGCAAATTTGACAATTTTGACCTATA 59.178 33.333 33.72 2.51 40.09 1.31
2794 3346 9.213799 GGCAAATTTGACAATTTTGACCTATAA 57.786 29.630 27.56 0.00 40.09 0.98
2820 3372 9.778993 ATCGAAATCAAATTACAGAATGAACTG 57.221 29.630 0.00 0.00 39.69 3.16
2821 3373 8.236586 TCGAAATCAAATTACAGAATGAACTGG 58.763 33.333 0.00 0.00 39.69 4.00
2822 3374 8.023128 CGAAATCAAATTACAGAATGAACTGGT 58.977 33.333 0.00 0.00 39.69 4.00
2823 3375 9.696917 GAAATCAAATTACAGAATGAACTGGTT 57.303 29.630 0.00 0.00 39.69 3.67
2824 3376 9.480053 AAATCAAATTACAGAATGAACTGGTTG 57.520 29.630 0.00 0.00 39.69 3.77
2825 3377 6.446318 TCAAATTACAGAATGAACTGGTTGC 58.554 36.000 0.00 0.00 39.69 4.17
2826 3378 4.685169 ATTACAGAATGAACTGGTTGCG 57.315 40.909 0.00 0.00 39.69 4.85
2827 3379 2.254546 ACAGAATGAACTGGTTGCGA 57.745 45.000 0.00 0.00 39.69 5.10
2828 3380 2.571212 ACAGAATGAACTGGTTGCGAA 58.429 42.857 0.00 0.00 39.69 4.70
2829 3381 2.948979 ACAGAATGAACTGGTTGCGAAA 59.051 40.909 0.00 0.00 39.69 3.46
2830 3382 3.243068 ACAGAATGAACTGGTTGCGAAAC 60.243 43.478 0.00 0.00 39.69 2.78
2831 3383 3.003689 CAGAATGAACTGGTTGCGAAACT 59.996 43.478 6.17 0.00 39.69 2.66
2832 3384 4.213270 CAGAATGAACTGGTTGCGAAACTA 59.787 41.667 6.17 0.00 39.69 2.24
2833 3385 5.003804 AGAATGAACTGGTTGCGAAACTAT 58.996 37.500 6.17 0.00 0.00 2.12
2834 3386 5.473504 AGAATGAACTGGTTGCGAAACTATT 59.526 36.000 6.17 0.00 0.00 1.73
2835 3387 5.705609 ATGAACTGGTTGCGAAACTATTT 57.294 34.783 6.17 0.00 0.00 1.40
2836 3388 5.103290 TGAACTGGTTGCGAAACTATTTC 57.897 39.130 13.74 13.74 36.32 2.17
2837 3389 4.576873 TGAACTGGTTGCGAAACTATTTCA 59.423 37.500 17.86 17.86 39.63 2.69
2838 3390 5.240623 TGAACTGGTTGCGAAACTATTTCAT 59.759 36.000 17.86 0.00 39.63 2.57
2839 3391 5.296813 ACTGGTTGCGAAACTATTTCATC 57.703 39.130 6.17 0.00 39.63 2.92
2840 3392 4.156008 ACTGGTTGCGAAACTATTTCATCC 59.844 41.667 6.17 0.00 39.63 3.51
2841 3393 3.442273 TGGTTGCGAAACTATTTCATCCC 59.558 43.478 6.17 0.00 39.63 3.85
2842 3394 3.181490 GGTTGCGAAACTATTTCATCCCC 60.181 47.826 6.17 0.00 39.63 4.81
2843 3395 3.644966 TGCGAAACTATTTCATCCCCT 57.355 42.857 2.50 0.00 39.63 4.79
2844 3396 3.278574 TGCGAAACTATTTCATCCCCTG 58.721 45.455 2.50 0.00 39.63 4.45
2845 3397 3.054728 TGCGAAACTATTTCATCCCCTGA 60.055 43.478 2.50 0.00 39.63 3.86
2846 3398 3.312697 GCGAAACTATTTCATCCCCTGAC 59.687 47.826 2.50 0.00 39.63 3.51
2847 3399 3.877508 CGAAACTATTTCATCCCCTGACC 59.122 47.826 2.50 0.00 39.63 4.02
2848 3400 3.953542 AACTATTTCATCCCCTGACCC 57.046 47.619 0.00 0.00 32.17 4.46
2849 3401 3.151542 ACTATTTCATCCCCTGACCCT 57.848 47.619 0.00 0.00 32.17 4.34
2850 3402 3.474920 ACTATTTCATCCCCTGACCCTT 58.525 45.455 0.00 0.00 32.17 3.95
2851 3403 3.858638 ACTATTTCATCCCCTGACCCTTT 59.141 43.478 0.00 0.00 32.17 3.11
2852 3404 3.852858 ATTTCATCCCCTGACCCTTTT 57.147 42.857 0.00 0.00 32.17 2.27
2853 3405 2.603075 TTCATCCCCTGACCCTTTTG 57.397 50.000 0.00 0.00 32.17 2.44
2854 3406 1.455822 TCATCCCCTGACCCTTTTGT 58.544 50.000 0.00 0.00 0.00 2.83
2855 3407 1.075374 TCATCCCCTGACCCTTTTGTG 59.925 52.381 0.00 0.00 0.00 3.33
2856 3408 1.158007 ATCCCCTGACCCTTTTGTGT 58.842 50.000 0.00 0.00 0.00 3.72
2857 3409 1.822425 TCCCCTGACCCTTTTGTGTA 58.178 50.000 0.00 0.00 0.00 2.90
2858 3410 1.702957 TCCCCTGACCCTTTTGTGTAG 59.297 52.381 0.00 0.00 0.00 2.74
2859 3411 1.423921 CCCCTGACCCTTTTGTGTAGT 59.576 52.381 0.00 0.00 0.00 2.73
2860 3412 2.504367 CCCTGACCCTTTTGTGTAGTG 58.496 52.381 0.00 0.00 0.00 2.74
2861 3413 1.880027 CCTGACCCTTTTGTGTAGTGC 59.120 52.381 0.00 0.00 0.00 4.40
2862 3414 1.880027 CTGACCCTTTTGTGTAGTGCC 59.120 52.381 0.00 0.00 0.00 5.01
2863 3415 1.244816 GACCCTTTTGTGTAGTGCCC 58.755 55.000 0.00 0.00 0.00 5.36
2864 3416 0.536460 ACCCTTTTGTGTAGTGCCCG 60.536 55.000 0.00 0.00 0.00 6.13
2865 3417 1.579429 CCTTTTGTGTAGTGCCCGC 59.421 57.895 0.00 0.00 0.00 6.13
2866 3418 1.579429 CTTTTGTGTAGTGCCCGCC 59.421 57.895 0.00 0.00 0.00 6.13
2867 3419 1.152943 TTTTGTGTAGTGCCCGCCA 60.153 52.632 0.00 0.00 0.00 5.69
2868 3420 1.448922 TTTTGTGTAGTGCCCGCCAC 61.449 55.000 0.00 0.00 45.01 5.01
2888 3440 4.373116 CGGCGCCACACCTACTGT 62.373 66.667 28.98 0.00 0.00 3.55
2896 3448 3.253955 CACCTACTGTGCAACGCC 58.746 61.111 0.00 0.00 42.39 5.68
2897 3449 1.301716 CACCTACTGTGCAACGCCT 60.302 57.895 0.00 0.00 42.39 5.52
2898 3450 1.004918 ACCTACTGTGCAACGCCTC 60.005 57.895 0.00 0.00 42.39 4.70
2899 3451 1.741770 CCTACTGTGCAACGCCTCC 60.742 63.158 0.00 0.00 42.39 4.30
2900 3452 1.741770 CTACTGTGCAACGCCTCCC 60.742 63.158 0.00 0.00 42.39 4.30
2901 3453 2.449031 CTACTGTGCAACGCCTCCCA 62.449 60.000 0.00 0.00 42.39 4.37
2902 3454 2.449031 TACTGTGCAACGCCTCCCAG 62.449 60.000 0.00 0.00 42.39 4.45
2903 3455 3.535629 CTGTGCAACGCCTCCCAGA 62.536 63.158 0.00 0.00 42.39 3.86
2904 3456 2.045926 GTGCAACGCCTCCCAGAT 60.046 61.111 0.00 0.00 0.00 2.90
2905 3457 1.220749 GTGCAACGCCTCCCAGATA 59.779 57.895 0.00 0.00 0.00 1.98
2906 3458 0.811616 GTGCAACGCCTCCCAGATAG 60.812 60.000 0.00 0.00 0.00 2.08
2907 3459 1.227674 GCAACGCCTCCCAGATAGG 60.228 63.158 0.00 0.00 37.17 2.57
2912 3464 4.521559 CCTCCCAGATAGGCGCTA 57.478 61.111 7.64 0.00 35.39 4.26
2913 3465 1.968310 CCTCCCAGATAGGCGCTAC 59.032 63.158 7.64 0.00 35.39 3.58
2914 3466 0.827925 CCTCCCAGATAGGCGCTACA 60.828 60.000 7.64 0.00 35.39 2.74
2915 3467 0.315568 CTCCCAGATAGGCGCTACAC 59.684 60.000 7.64 0.00 35.39 2.90
2917 3469 1.007271 CCAGATAGGCGCTACACGG 60.007 63.158 7.64 0.00 43.93 4.94
2934 3486 4.830765 GCCAGCGTCGCACCCATA 62.831 66.667 21.09 0.00 0.00 2.74
2935 3487 2.108976 CCAGCGTCGCACCCATAT 59.891 61.111 21.09 0.00 0.00 1.78
2936 3488 2.246739 CCAGCGTCGCACCCATATG 61.247 63.158 21.09 6.70 0.00 1.78
2937 3489 1.521457 CAGCGTCGCACCCATATGT 60.521 57.895 21.09 0.00 0.00 2.29
2938 3490 1.521457 AGCGTCGCACCCATATGTG 60.521 57.895 21.09 0.00 39.29 3.21
2945 3497 3.594453 CACCCATATGTGCCCAAGT 57.406 52.632 1.24 0.00 0.00 3.16
2946 3498 1.392589 CACCCATATGTGCCCAAGTC 58.607 55.000 1.24 0.00 0.00 3.01
2947 3499 0.998928 ACCCATATGTGCCCAAGTCA 59.001 50.000 1.24 0.00 0.00 3.41
2948 3500 1.064463 ACCCATATGTGCCCAAGTCAG 60.064 52.381 1.24 0.00 0.00 3.51
2949 3501 1.027357 CCATATGTGCCCAAGTCAGC 58.973 55.000 1.24 0.00 0.00 4.26
2950 3502 0.659427 CATATGTGCCCAAGTCAGCG 59.341 55.000 0.00 0.00 0.00 5.18
2951 3503 0.253044 ATATGTGCCCAAGTCAGCGT 59.747 50.000 0.00 0.00 0.00 5.07
2952 3504 0.673333 TATGTGCCCAAGTCAGCGTG 60.673 55.000 0.00 0.00 0.00 5.34
2953 3505 4.030452 GTGCCCAAGTCAGCGTGC 62.030 66.667 0.00 0.00 0.00 5.34
2954 3506 4.560743 TGCCCAAGTCAGCGTGCA 62.561 61.111 0.00 0.00 0.00 4.57
2955 3507 3.730761 GCCCAAGTCAGCGTGCAG 61.731 66.667 0.00 0.00 0.00 4.41
2975 3527 3.150335 CCTGAGAGCTAGGCGCCA 61.150 66.667 31.54 14.00 40.39 5.69
2976 3528 2.105930 CTGAGAGCTAGGCGCCAC 59.894 66.667 31.54 17.93 40.39 5.01
2977 3529 2.679996 TGAGAGCTAGGCGCCACA 60.680 61.111 31.54 15.42 40.39 4.17
2978 3530 2.202810 GAGAGCTAGGCGCCACAC 60.203 66.667 31.54 17.11 40.39 3.82
2979 3531 2.681778 AGAGCTAGGCGCCACACT 60.682 61.111 31.54 21.99 40.39 3.55
2980 3532 1.379977 AGAGCTAGGCGCCACACTA 60.380 57.895 31.54 11.42 40.39 2.74
2981 3533 1.227002 GAGCTAGGCGCCACACTAC 60.227 63.158 31.54 11.53 40.39 2.73
2982 3534 1.945354 GAGCTAGGCGCCACACTACA 61.945 60.000 31.54 2.99 40.39 2.74
2983 3535 1.810030 GCTAGGCGCCACACTACAC 60.810 63.158 31.54 4.76 0.00 2.90
2984 3536 1.589630 CTAGGCGCCACACTACACA 59.410 57.895 31.54 0.33 0.00 3.72
2985 3537 0.458543 CTAGGCGCCACACTACACAG 60.459 60.000 31.54 6.91 0.00 3.66
2986 3538 1.183030 TAGGCGCCACACTACACAGT 61.183 55.000 31.54 5.27 34.42 3.55
2993 3545 2.856032 CACTACACAGTGCAGCGC 59.144 61.111 0.00 0.00 45.44 5.92
2994 3546 2.357517 ACTACACAGTGCAGCGCC 60.358 61.111 2.29 0.00 32.25 6.53
2995 3547 2.047844 CTACACAGTGCAGCGCCT 60.048 61.111 2.29 0.00 0.00 5.52
2996 3548 1.215382 CTACACAGTGCAGCGCCTA 59.785 57.895 2.29 0.00 0.00 3.93
2997 3549 0.803768 CTACACAGTGCAGCGCCTAG 60.804 60.000 2.29 0.00 0.00 3.02
3010 3562 2.187946 CCTAGCTCCTGGGCGTTG 59.812 66.667 0.00 0.00 37.29 4.10
3011 3563 2.512515 CTAGCTCCTGGGCGTTGC 60.513 66.667 0.00 0.00 37.29 4.17
3012 3564 3.315142 CTAGCTCCTGGGCGTTGCA 62.315 63.158 0.00 0.00 37.29 4.08
3013 3565 3.605749 TAGCTCCTGGGCGTTGCAC 62.606 63.158 0.00 0.00 37.29 4.57
3015 3567 2.662596 CTCCTGGGCGTTGCACTA 59.337 61.111 0.00 0.00 30.56 2.74
3016 3568 1.448540 CTCCTGGGCGTTGCACTAG 60.449 63.158 0.00 0.00 30.56 2.57
3017 3569 2.172483 CTCCTGGGCGTTGCACTAGT 62.172 60.000 0.00 0.00 30.56 2.57
3018 3570 2.034879 CCTGGGCGTTGCACTAGTG 61.035 63.158 18.93 18.93 30.56 2.74
3028 3580 2.816958 CACTAGTGCAGCGCCTGG 60.817 66.667 10.54 0.00 31.21 4.45
3029 3581 4.087892 ACTAGTGCAGCGCCTGGG 62.088 66.667 2.29 0.00 31.21 4.45
3040 3592 2.671619 GCCTGGGCGCTACACAAA 60.672 61.111 7.64 0.00 0.00 2.83
3041 3593 2.265182 GCCTGGGCGCTACACAAAA 61.265 57.895 7.64 0.00 0.00 2.44
3042 3594 1.875963 CCTGGGCGCTACACAAAAG 59.124 57.895 7.64 0.00 0.00 2.27
3043 3595 1.586154 CCTGGGCGCTACACAAAAGG 61.586 60.000 7.64 0.42 0.00 3.11
3044 3596 1.586154 CTGGGCGCTACACAAAAGGG 61.586 60.000 7.64 0.00 0.00 3.95
3045 3597 1.602605 GGGCGCTACACAAAAGGGT 60.603 57.895 7.64 0.00 0.00 4.34
3046 3598 1.583495 GGGCGCTACACAAAAGGGTC 61.583 60.000 7.64 0.00 0.00 4.46
3047 3599 0.887387 GGCGCTACACAAAAGGGTCA 60.887 55.000 7.64 0.00 32.25 4.02
3048 3600 0.517316 GCGCTACACAAAAGGGTCAG 59.483 55.000 0.00 0.00 0.00 3.51
3049 3601 1.156736 CGCTACACAAAAGGGTCAGG 58.843 55.000 0.00 0.00 0.00 3.86
3050 3602 1.534729 GCTACACAAAAGGGTCAGGG 58.465 55.000 0.00 0.00 0.00 4.45
3051 3603 1.886655 GCTACACAAAAGGGTCAGGGG 60.887 57.143 0.00 0.00 0.00 4.79
3052 3604 1.702957 CTACACAAAAGGGTCAGGGGA 59.297 52.381 0.00 0.00 0.00 4.81
3053 3605 0.478507 ACACAAAAGGGTCAGGGGAG 59.521 55.000 0.00 0.00 0.00 4.30
3054 3606 0.478507 CACAAAAGGGTCAGGGGAGT 59.521 55.000 0.00 0.00 0.00 3.85
3055 3607 0.478507 ACAAAAGGGTCAGGGGAGTG 59.521 55.000 0.00 0.00 0.00 3.51
3056 3608 0.771127 CAAAAGGGTCAGGGGAGTGA 59.229 55.000 0.00 0.00 0.00 3.41
3057 3609 1.144913 CAAAAGGGTCAGGGGAGTGAA 59.855 52.381 0.00 0.00 0.00 3.18
3058 3610 1.529744 AAAGGGTCAGGGGAGTGAAA 58.470 50.000 0.00 0.00 0.00 2.69
3059 3611 1.760405 AAGGGTCAGGGGAGTGAAAT 58.240 50.000 0.00 0.00 0.00 2.17
3060 3612 2.661176 AGGGTCAGGGGAGTGAAATA 57.339 50.000 0.00 0.00 0.00 1.40
3061 3613 2.482494 AGGGTCAGGGGAGTGAAATAG 58.518 52.381 0.00 0.00 0.00 1.73
3062 3614 2.197465 GGGTCAGGGGAGTGAAATAGT 58.803 52.381 0.00 0.00 0.00 2.12
3063 3615 2.576648 GGGTCAGGGGAGTGAAATAGTT 59.423 50.000 0.00 0.00 0.00 2.24
3064 3616 3.010250 GGGTCAGGGGAGTGAAATAGTTT 59.990 47.826 0.00 0.00 0.00 2.66
3065 3617 4.262617 GGTCAGGGGAGTGAAATAGTTTC 58.737 47.826 0.00 0.00 40.08 2.78
3066 3618 3.933332 GTCAGGGGAGTGAAATAGTTTCG 59.067 47.826 0.00 0.00 42.55 3.46
3067 3619 3.581332 TCAGGGGAGTGAAATAGTTTCGT 59.419 43.478 0.00 0.00 42.55 3.85
3068 3620 4.773674 TCAGGGGAGTGAAATAGTTTCGTA 59.226 41.667 0.00 0.00 42.55 3.43
3069 3621 5.246656 TCAGGGGAGTGAAATAGTTTCGTAA 59.753 40.000 0.00 0.00 42.55 3.18
3070 3622 5.350640 CAGGGGAGTGAAATAGTTTCGTAAC 59.649 44.000 0.00 0.00 42.55 2.50
3071 3623 4.633126 GGGGAGTGAAATAGTTTCGTAACC 59.367 45.833 0.85 0.00 42.55 2.85
3072 3624 5.240121 GGGAGTGAAATAGTTTCGTAACCA 58.760 41.667 0.85 0.00 42.55 3.67
3073 3625 5.350640 GGGAGTGAAATAGTTTCGTAACCAG 59.649 44.000 0.85 0.00 42.55 4.00
3074 3626 5.930569 GGAGTGAAATAGTTTCGTAACCAGT 59.069 40.000 0.85 0.00 42.55 4.00
3075 3627 6.426025 GGAGTGAAATAGTTTCGTAACCAGTT 59.574 38.462 0.85 0.00 42.55 3.16
3076 3628 7.359849 GGAGTGAAATAGTTTCGTAACCAGTTC 60.360 40.741 6.59 6.59 42.55 3.01
3077 3629 6.987992 AGTGAAATAGTTTCGTAACCAGTTCA 59.012 34.615 10.89 10.89 42.55 3.18
3078 3630 7.660208 AGTGAAATAGTTTCGTAACCAGTTCAT 59.340 33.333 16.03 6.25 40.27 2.57
3079 3631 8.287503 GTGAAATAGTTTCGTAACCAGTTCATT 58.712 33.333 16.03 0.36 40.27 2.57
3080 3632 8.500773 TGAAATAGTTTCGTAACCAGTTCATTC 58.499 33.333 10.89 4.21 42.55 2.67
3081 3633 8.617290 AAATAGTTTCGTAACCAGTTCATTCT 57.383 30.769 0.85 0.00 34.71 2.40
3082 3634 5.924475 AGTTTCGTAACCAGTTCATTCTG 57.076 39.130 0.85 0.00 34.71 3.02
3083 3635 5.365619 AGTTTCGTAACCAGTTCATTCTGT 58.634 37.500 0.85 0.00 34.71 3.41
3084 3636 5.236478 AGTTTCGTAACCAGTTCATTCTGTG 59.764 40.000 0.85 0.00 34.71 3.66
3085 3637 4.594123 TCGTAACCAGTTCATTCTGTGA 57.406 40.909 0.00 0.00 34.02 3.58
3086 3638 5.147330 TCGTAACCAGTTCATTCTGTGAT 57.853 39.130 0.00 0.00 36.54 3.06
3087 3639 5.547465 TCGTAACCAGTTCATTCTGTGATT 58.453 37.500 0.00 0.00 36.54 2.57
3088 3640 5.995282 TCGTAACCAGTTCATTCTGTGATTT 59.005 36.000 0.00 0.00 36.54 2.17
3089 3641 6.073276 TCGTAACCAGTTCATTCTGTGATTTG 60.073 38.462 0.00 0.00 36.54 2.32
3090 3642 6.073276 CGTAACCAGTTCATTCTGTGATTTGA 60.073 38.462 0.00 0.00 36.54 2.69
3091 3643 6.906157 AACCAGTTCATTCTGTGATTTGAT 57.094 33.333 0.00 0.00 36.54 2.57
3092 3644 6.906157 ACCAGTTCATTCTGTGATTTGATT 57.094 33.333 0.00 0.00 36.54 2.57
3093 3645 7.294017 ACCAGTTCATTCTGTGATTTGATTT 57.706 32.000 0.00 0.00 36.54 2.17
3094 3646 7.373493 ACCAGTTCATTCTGTGATTTGATTTC 58.627 34.615 0.00 0.00 36.54 2.17
3095 3647 6.525628 CCAGTTCATTCTGTGATTTGATTTCG 59.474 38.462 0.00 0.00 36.54 3.46
3096 3648 7.300320 CAGTTCATTCTGTGATTTGATTTCGA 58.700 34.615 0.00 0.00 36.54 3.71
3097 3649 7.966753 CAGTTCATTCTGTGATTTGATTTCGAT 59.033 33.333 0.00 0.00 36.54 3.59
3098 3650 8.517878 AGTTCATTCTGTGATTTGATTTCGATT 58.482 29.630 0.00 0.00 36.54 3.34
3099 3651 9.773328 GTTCATTCTGTGATTTGATTTCGATTA 57.227 29.630 0.00 0.00 36.54 1.75
3104 3656 9.613428 TTCTGTGATTTGATTTCGATTATAGGT 57.387 29.630 0.00 0.00 0.00 3.08
3105 3657 9.261180 TCTGTGATTTGATTTCGATTATAGGTC 57.739 33.333 0.00 0.00 0.00 3.85
3106 3658 8.956533 TGTGATTTGATTTCGATTATAGGTCA 57.043 30.769 0.00 0.00 0.00 4.02
3107 3659 9.389755 TGTGATTTGATTTCGATTATAGGTCAA 57.610 29.630 0.00 0.00 0.00 3.18
3128 3680 4.816786 AATTTGTCAAATTTGCCACAGC 57.183 36.364 16.26 0.60 37.84 4.40
3129 3681 3.540314 TTTGTCAAATTTGCCACAGCT 57.460 38.095 13.54 0.00 40.80 4.24
3130 3682 2.512485 TGTCAAATTTGCCACAGCTG 57.488 45.000 13.48 13.48 40.80 4.24
3131 3683 2.030371 TGTCAAATTTGCCACAGCTGA 58.970 42.857 23.35 0.00 40.80 4.26
3151 3703 0.250424 TGCTGCTGCTGCTTCTGTTA 60.250 50.000 27.67 7.14 40.48 2.41
3197 3749 1.680735 CTGCTGGGCTCTCACTAGTAG 59.319 57.143 0.00 0.00 0.00 2.57
3198 3750 1.285078 TGCTGGGCTCTCACTAGTAGA 59.715 52.381 3.59 0.00 0.00 2.59
3199 3751 1.953686 GCTGGGCTCTCACTAGTAGAG 59.046 57.143 17.93 17.93 42.84 2.43
3200 3752 2.685522 GCTGGGCTCTCACTAGTAGAGT 60.686 54.545 20.80 0.00 42.11 3.24
3201 3753 3.433882 GCTGGGCTCTCACTAGTAGAGTA 60.434 52.174 20.80 12.37 42.11 2.59
3202 3754 4.131596 CTGGGCTCTCACTAGTAGAGTAC 58.868 52.174 20.80 16.49 42.11 2.73
3203 3755 3.132925 GGGCTCTCACTAGTAGAGTACG 58.867 54.545 20.80 12.95 42.11 3.67
3222 3774 2.287427 ACGAGTACTTGTCCGTGTCTTG 60.287 50.000 10.17 0.00 33.69 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.107051 GGTCACTGCGGCATGTGC 62.107 66.667 20.47 16.46 41.14 4.57
113 117 1.073216 CACATGTCTCCGTCGTCAGC 61.073 60.000 0.00 0.00 0.00 4.26
115 119 0.671796 AACACATGTCTCCGTCGTCA 59.328 50.000 0.00 0.00 0.00 4.35
134 169 0.950836 CTTGGTGTCACGATTTGGCA 59.049 50.000 0.00 0.00 37.55 4.92
146 181 7.423844 TCTGAATGTATGTCTATCTTGGTGT 57.576 36.000 0.00 0.00 0.00 4.16
161 196 4.442052 CCTTCTCCGATTGCTCTGAATGTA 60.442 45.833 0.00 0.00 0.00 2.29
173 208 4.576463 CCGAATTCAATTCCTTCTCCGATT 59.424 41.667 6.22 0.00 35.89 3.34
176 211 2.614057 CCCGAATTCAATTCCTTCTCCG 59.386 50.000 6.22 0.00 35.89 4.63
244 279 0.535102 CAAGGCCAGAAACAGACCGT 60.535 55.000 5.01 0.00 0.00 4.83
269 304 3.898482 AGAGGGGTTTATGTTATGTGGC 58.102 45.455 0.00 0.00 0.00 5.01
284 319 3.659183 AGATTTGACCATCAAGAGGGG 57.341 47.619 5.69 0.00 37.70 4.79
285 320 8.752005 TTATAAAGATTTGACCATCAAGAGGG 57.248 34.615 0.00 0.00 37.70 4.30
470 505 4.077184 CCGTTGCTGGCGGGAGTA 62.077 66.667 0.00 0.00 44.98 2.59
487 522 2.186076 GCGCCATACTACGAGCATATC 58.814 52.381 0.00 0.00 0.00 1.63
496 531 1.948104 TTGGTCATGCGCCATACTAC 58.052 50.000 4.18 0.00 35.71 2.73
497 532 2.700722 TTTGGTCATGCGCCATACTA 57.299 45.000 4.18 0.00 35.71 1.82
498 533 2.057137 ATTTGGTCATGCGCCATACT 57.943 45.000 4.18 0.00 35.71 2.12
579 614 0.315220 CACGAAACCGACGCGAAAAA 60.315 50.000 15.93 0.00 0.00 1.94
587 622 3.343421 AAGCGCCACGAAACCGAC 61.343 61.111 2.29 0.00 0.00 4.79
676 716 1.069636 GCAGTCGAAAACAAGGCAGAG 60.070 52.381 0.00 0.00 0.00 3.35
693 733 0.804544 CAATGCAAATGGCCGAGCAG 60.805 55.000 14.92 1.61 43.89 4.24
709 750 3.128589 CCCACACTTAAATACGCAGCAAT 59.871 43.478 0.00 0.00 0.00 3.56
732 773 1.210155 GAAAGTTGCTTCGGCGCAT 59.790 52.632 10.83 0.00 45.37 4.73
735 776 0.110644 GTGAGAAAGTTGCTTCGGCG 60.111 55.000 0.00 0.00 45.37 6.46
860 910 2.563179 GGCAGAAGAAGTGTGAGAGGTA 59.437 50.000 0.00 0.00 0.00 3.08
881 931 2.296920 TCCAACGGGGAAGATCCAG 58.703 57.895 0.00 0.00 44.80 3.86
930 980 0.607489 TTGCTGGCTTTGCTCCTCTC 60.607 55.000 0.00 0.00 0.00 3.20
1002 1060 1.270550 GCAAGACCAATCCCAACACAG 59.729 52.381 0.00 0.00 0.00 3.66
1008 1066 1.299648 CCGAGCAAGACCAATCCCA 59.700 57.895 0.00 0.00 0.00 4.37
1011 1071 0.721718 CGAACCGAGCAAGACCAATC 59.278 55.000 0.00 0.00 0.00 2.67
1015 1075 3.479269 CGCGAACCGAGCAAGACC 61.479 66.667 0.00 0.00 40.02 3.85
1026 1086 2.434185 TGCCTGTCCATCGCGAAC 60.434 61.111 15.24 7.85 0.00 3.95
1029 1089 3.490759 GTGTGCCTGTCCATCGCG 61.491 66.667 0.00 0.00 0.00 5.87
1262 1322 0.251634 GCCTACCTTGCAGCTTCTCT 59.748 55.000 0.00 0.00 0.00 3.10
1488 1548 3.775654 GCCACGTCCTCCTCCTGG 61.776 72.222 0.00 0.00 0.00 4.45
2047 2107 0.470833 AGCTGACCTCACTGTCTGGT 60.471 55.000 1.42 1.42 39.23 4.00
2119 2179 1.133853 GCTTCCAATCCCATGAGCTCT 60.134 52.381 16.19 0.00 0.00 4.09
2209 2269 2.561733 TTATTGCTCGACTGTCCTCG 57.438 50.000 1.55 0.00 34.83 4.63
2235 2295 4.319901 CGGAAAAATAAGCGAAAAACCGAG 59.680 41.667 0.00 0.00 39.11 4.63
2238 2298 4.300803 ACCGGAAAAATAAGCGAAAAACC 58.699 39.130 9.46 0.00 0.00 3.27
2239 2299 5.893512 AACCGGAAAAATAAGCGAAAAAC 57.106 34.783 9.46 0.00 0.00 2.43
2240 2300 6.501781 TGTAACCGGAAAAATAAGCGAAAAA 58.498 32.000 9.46 0.00 0.00 1.94
2245 2305 6.544622 TGTATTGTAACCGGAAAAATAAGCG 58.455 36.000 9.46 0.00 0.00 4.68
2246 2306 8.920509 AATGTATTGTAACCGGAAAAATAAGC 57.079 30.769 9.46 0.00 0.00 3.09
2287 2356 2.716217 GGGCTGTTCAGCTAATTCAGT 58.284 47.619 21.46 0.00 34.73 3.41
2355 2427 7.959658 ATCCCAGTGAGAGATATGATAGAAG 57.040 40.000 0.00 0.00 0.00 2.85
2358 2430 7.329499 CCAAATCCCAGTGAGAGATATGATAG 58.671 42.308 0.00 0.00 0.00 2.08
2361 2433 4.202398 GCCAAATCCCAGTGAGAGATATGA 60.202 45.833 0.00 0.00 0.00 2.15
2383 2908 1.772063 CGTAGCTTAATGGCACGGGC 61.772 60.000 0.00 0.00 35.15 6.13
2422 2947 0.603569 AGTGGTGAGCTGTTACGAGG 59.396 55.000 0.00 0.00 0.00 4.63
2423 2948 2.440539 AAGTGGTGAGCTGTTACGAG 57.559 50.000 0.00 0.00 0.00 4.18
2446 2971 1.081509 GCATTGGCAGTTTCGCGAA 60.082 52.632 19.38 19.38 40.72 4.70
2468 2993 1.106285 CCCAGCAAATTGTAGGAGCC 58.894 55.000 7.28 0.00 0.00 4.70
2476 3001 6.857777 TTGTTGTTTTATCCCAGCAAATTG 57.142 33.333 0.00 0.00 30.37 2.32
2496 3021 6.653526 TCAAGTGTTCAATGGATCAATTGT 57.346 33.333 20.07 0.41 43.75 2.71
2505 3030 8.647143 AACAAAACTATTCAAGTGTTCAATGG 57.353 30.769 0.00 0.00 38.88 3.16
2515 3040 9.971744 CCTCAAAACAAAACAAAACTATTCAAG 57.028 29.630 0.00 0.00 0.00 3.02
2525 3050 6.760291 AGTGTTACCCTCAAAACAAAACAAA 58.240 32.000 0.00 0.00 37.35 2.83
2527 3052 5.986501 AGTGTTACCCTCAAAACAAAACA 57.013 34.783 0.00 0.00 37.35 2.83
2531 3056 6.783708 ATTCAAGTGTTACCCTCAAAACAA 57.216 33.333 0.00 0.00 37.35 2.83
2532 3057 7.057894 ACTATTCAAGTGTTACCCTCAAAACA 58.942 34.615 0.00 0.00 36.93 2.83
2533 3058 7.506328 ACTATTCAAGTGTTACCCTCAAAAC 57.494 36.000 0.00 0.00 36.93 2.43
2534 3059 9.280174 CTAACTATTCAAGTGTTACCCTCAAAA 57.720 33.333 0.00 0.00 38.88 2.44
2535 3060 8.653191 TCTAACTATTCAAGTGTTACCCTCAAA 58.347 33.333 0.00 0.00 38.88 2.69
2536 3061 8.197592 TCTAACTATTCAAGTGTTACCCTCAA 57.802 34.615 0.00 0.00 38.88 3.02
2537 3062 7.786046 TCTAACTATTCAAGTGTTACCCTCA 57.214 36.000 0.00 0.00 38.88 3.86
2538 3063 9.498176 TTTTCTAACTATTCAAGTGTTACCCTC 57.502 33.333 0.00 0.00 38.88 4.30
2539 3064 9.281371 GTTTTCTAACTATTCAAGTGTTACCCT 57.719 33.333 0.00 0.00 38.88 4.34
2540 3065 8.509690 GGTTTTCTAACTATTCAAGTGTTACCC 58.490 37.037 0.00 0.00 38.88 3.69
2541 3066 9.281371 AGGTTTTCTAACTATTCAAGTGTTACC 57.719 33.333 0.00 0.00 38.88 2.85
2559 3084 7.039270 GTGACCAACAACAATTTAGGTTTTCT 58.961 34.615 0.00 0.00 0.00 2.52
2560 3085 6.814146 TGTGACCAACAACAATTTAGGTTTTC 59.186 34.615 0.00 0.00 35.24 2.29
2632 3158 1.818060 AGAGAGCTGCTGAGTGTACAG 59.182 52.381 7.01 0.00 40.43 2.74
2669 3214 1.409381 GGCGGACCCTACTACTGTACT 60.409 57.143 0.00 0.00 0.00 2.73
2709 3261 0.945813 TAAAGCGGAACCAACCAACG 59.054 50.000 0.00 0.00 0.00 4.10
2722 3274 2.740714 GCTCGGCACACCTAAAGCG 61.741 63.158 0.00 0.00 0.00 4.68
2765 3317 5.241285 GGTCAAAATTGTCAAATTTGCCCAT 59.759 36.000 17.37 0.00 43.63 4.00
2766 3318 4.578105 GGTCAAAATTGTCAAATTTGCCCA 59.422 37.500 17.37 9.45 43.63 5.36
2767 3319 4.821260 AGGTCAAAATTGTCAAATTTGCCC 59.179 37.500 22.48 19.53 43.63 5.36
2768 3320 7.671495 ATAGGTCAAAATTGTCAAATTTGCC 57.329 32.000 17.69 19.32 43.63 4.52
2794 3346 9.778993 CAGTTCATTCTGTAATTTGATTTCGAT 57.221 29.630 0.00 0.00 0.00 3.59
2795 3347 8.236586 CCAGTTCATTCTGTAATTTGATTTCGA 58.763 33.333 0.00 0.00 34.02 3.71
2796 3348 8.023128 ACCAGTTCATTCTGTAATTTGATTTCG 58.977 33.333 0.00 0.00 34.02 3.46
2797 3349 9.696917 AACCAGTTCATTCTGTAATTTGATTTC 57.303 29.630 0.00 0.00 34.02 2.17
2798 3350 9.480053 CAACCAGTTCATTCTGTAATTTGATTT 57.520 29.630 0.00 0.00 34.02 2.17
2799 3351 7.599998 GCAACCAGTTCATTCTGTAATTTGATT 59.400 33.333 0.00 0.00 34.02 2.57
2800 3352 7.092716 GCAACCAGTTCATTCTGTAATTTGAT 58.907 34.615 0.00 0.00 34.02 2.57
2801 3353 6.446318 GCAACCAGTTCATTCTGTAATTTGA 58.554 36.000 0.00 0.00 34.02 2.69
2802 3354 5.343058 CGCAACCAGTTCATTCTGTAATTTG 59.657 40.000 0.00 0.00 34.02 2.32
2803 3355 5.240623 TCGCAACCAGTTCATTCTGTAATTT 59.759 36.000 0.00 0.00 34.02 1.82
2804 3356 4.759693 TCGCAACCAGTTCATTCTGTAATT 59.240 37.500 0.00 0.00 34.02 1.40
2805 3357 4.323417 TCGCAACCAGTTCATTCTGTAAT 58.677 39.130 0.00 0.00 34.02 1.89
2806 3358 3.734463 TCGCAACCAGTTCATTCTGTAA 58.266 40.909 0.00 0.00 34.02 2.41
2807 3359 3.394674 TCGCAACCAGTTCATTCTGTA 57.605 42.857 0.00 0.00 34.02 2.74
2808 3360 2.254546 TCGCAACCAGTTCATTCTGT 57.745 45.000 0.00 0.00 34.02 3.41
2809 3361 3.003689 AGTTTCGCAACCAGTTCATTCTG 59.996 43.478 0.00 0.00 32.70 3.02
2810 3362 3.214328 AGTTTCGCAACCAGTTCATTCT 58.786 40.909 0.00 0.00 32.70 2.40
2811 3363 3.626028 AGTTTCGCAACCAGTTCATTC 57.374 42.857 0.00 0.00 32.70 2.67
2812 3364 5.705609 AATAGTTTCGCAACCAGTTCATT 57.294 34.783 0.00 0.00 32.70 2.57
2813 3365 5.240623 TGAAATAGTTTCGCAACCAGTTCAT 59.759 36.000 5.34 0.00 42.55 2.57
2814 3366 4.576873 TGAAATAGTTTCGCAACCAGTTCA 59.423 37.500 5.34 5.34 42.55 3.18
2815 3367 5.103290 TGAAATAGTTTCGCAACCAGTTC 57.897 39.130 0.41 0.41 42.55 3.01
2816 3368 5.335661 GGATGAAATAGTTTCGCAACCAGTT 60.336 40.000 0.00 0.00 42.55 3.16
2817 3369 4.156008 GGATGAAATAGTTTCGCAACCAGT 59.844 41.667 0.00 0.00 42.55 4.00
2818 3370 4.438744 GGGATGAAATAGTTTCGCAACCAG 60.439 45.833 0.00 0.00 42.55 4.00
2819 3371 3.442273 GGGATGAAATAGTTTCGCAACCA 59.558 43.478 0.00 0.00 42.55 3.67
2820 3372 3.181490 GGGGATGAAATAGTTTCGCAACC 60.181 47.826 0.00 0.00 42.55 3.77
2821 3373 3.694566 AGGGGATGAAATAGTTTCGCAAC 59.305 43.478 0.00 0.00 42.55 4.17
2822 3374 3.694072 CAGGGGATGAAATAGTTTCGCAA 59.306 43.478 0.00 0.00 42.55 4.85
2823 3375 3.054728 TCAGGGGATGAAATAGTTTCGCA 60.055 43.478 0.00 0.00 42.55 5.10
2824 3376 3.312697 GTCAGGGGATGAAATAGTTTCGC 59.687 47.826 0.00 0.00 42.55 4.70
2825 3377 3.877508 GGTCAGGGGATGAAATAGTTTCG 59.122 47.826 0.00 0.00 42.55 3.46
2826 3378 4.079730 AGGGTCAGGGGATGAAATAGTTTC 60.080 45.833 0.00 0.00 40.43 2.78
2827 3379 3.858638 AGGGTCAGGGGATGAAATAGTTT 59.141 43.478 0.00 0.00 40.43 2.66
2828 3380 3.474920 AGGGTCAGGGGATGAAATAGTT 58.525 45.455 0.00 0.00 40.43 2.24
2829 3381 3.151542 AGGGTCAGGGGATGAAATAGT 57.848 47.619 0.00 0.00 40.43 2.12
2830 3382 4.526438 AAAGGGTCAGGGGATGAAATAG 57.474 45.455 0.00 0.00 40.43 1.73
2831 3383 4.045334 ACAAAAGGGTCAGGGGATGAAATA 59.955 41.667 0.00 0.00 40.43 1.40
2832 3384 3.181407 ACAAAAGGGTCAGGGGATGAAAT 60.181 43.478 0.00 0.00 40.43 2.17
2833 3385 2.178984 ACAAAAGGGTCAGGGGATGAAA 59.821 45.455 0.00 0.00 40.43 2.69
2834 3386 1.786441 ACAAAAGGGTCAGGGGATGAA 59.214 47.619 0.00 0.00 40.43 2.57
2835 3387 1.075374 CACAAAAGGGTCAGGGGATGA 59.925 52.381 0.00 0.00 34.79 2.92
2836 3388 1.203050 ACACAAAAGGGTCAGGGGATG 60.203 52.381 0.00 0.00 0.00 3.51
2837 3389 1.158007 ACACAAAAGGGTCAGGGGAT 58.842 50.000 0.00 0.00 0.00 3.85
2838 3390 1.702957 CTACACAAAAGGGTCAGGGGA 59.297 52.381 0.00 0.00 0.00 4.81
2839 3391 1.423921 ACTACACAAAAGGGTCAGGGG 59.576 52.381 0.00 0.00 0.00 4.79
2840 3392 2.504367 CACTACACAAAAGGGTCAGGG 58.496 52.381 0.00 0.00 0.00 4.45
2841 3393 1.880027 GCACTACACAAAAGGGTCAGG 59.120 52.381 0.00 0.00 0.00 3.86
2842 3394 1.880027 GGCACTACACAAAAGGGTCAG 59.120 52.381 0.00 0.00 0.00 3.51
2843 3395 1.477923 GGGCACTACACAAAAGGGTCA 60.478 52.381 0.00 0.00 0.00 4.02
2844 3396 1.244816 GGGCACTACACAAAAGGGTC 58.755 55.000 0.00 0.00 0.00 4.46
2845 3397 0.536460 CGGGCACTACACAAAAGGGT 60.536 55.000 0.00 0.00 0.00 4.34
2846 3398 1.862602 GCGGGCACTACACAAAAGGG 61.863 60.000 0.00 0.00 0.00 3.95
2847 3399 1.579429 GCGGGCACTACACAAAAGG 59.421 57.895 0.00 0.00 0.00 3.11
2848 3400 1.169661 TGGCGGGCACTACACAAAAG 61.170 55.000 0.00 0.00 0.00 2.27
2849 3401 1.152943 TGGCGGGCACTACACAAAA 60.153 52.632 0.00 0.00 0.00 2.44
2850 3402 1.894756 GTGGCGGGCACTACACAAA 60.895 57.895 25.48 0.00 34.16 2.83
2851 3403 2.281208 GTGGCGGGCACTACACAA 60.281 61.111 25.48 0.00 34.16 3.33
2852 3404 4.673298 CGTGGCGGGCACTACACA 62.673 66.667 28.62 0.00 33.62 3.72
2871 3423 4.373116 ACAGTAGGTGTGGCGCCG 62.373 66.667 23.90 6.26 38.28 6.46
2880 3432 1.004918 GAGGCGTTGCACAGTAGGT 60.005 57.895 0.00 0.00 0.00 3.08
2881 3433 1.741770 GGAGGCGTTGCACAGTAGG 60.742 63.158 0.00 0.00 0.00 3.18
2882 3434 1.741770 GGGAGGCGTTGCACAGTAG 60.742 63.158 0.00 0.00 0.00 2.57
2883 3435 2.345991 GGGAGGCGTTGCACAGTA 59.654 61.111 0.00 0.00 0.00 2.74
2884 3436 3.832237 CTGGGAGGCGTTGCACAGT 62.832 63.158 0.00 0.00 0.00 3.55
2885 3437 2.809861 ATCTGGGAGGCGTTGCACAG 62.810 60.000 0.00 0.00 0.00 3.66
2886 3438 1.549243 TATCTGGGAGGCGTTGCACA 61.549 55.000 0.00 0.00 0.00 4.57
2887 3439 0.811616 CTATCTGGGAGGCGTTGCAC 60.812 60.000 0.00 0.00 0.00 4.57
2888 3440 1.522092 CTATCTGGGAGGCGTTGCA 59.478 57.895 0.00 0.00 0.00 4.08
2889 3441 1.227674 CCTATCTGGGAGGCGTTGC 60.228 63.158 0.00 0.00 0.00 4.17
2895 3447 0.827925 TGTAGCGCCTATCTGGGAGG 60.828 60.000 2.29 0.00 37.12 4.30
2896 3448 0.315568 GTGTAGCGCCTATCTGGGAG 59.684 60.000 2.29 0.00 36.00 4.30
2897 3449 1.452953 CGTGTAGCGCCTATCTGGGA 61.453 60.000 2.29 0.00 36.00 4.37
2898 3450 1.007271 CGTGTAGCGCCTATCTGGG 60.007 63.158 2.29 0.00 36.00 4.45
2899 3451 1.007271 CCGTGTAGCGCCTATCTGG 60.007 63.158 2.29 0.00 39.71 3.86
2900 3452 1.661821 GCCGTGTAGCGCCTATCTG 60.662 63.158 2.29 0.00 39.71 2.90
2901 3453 2.728817 GCCGTGTAGCGCCTATCT 59.271 61.111 2.29 0.00 39.71 1.98
2902 3454 2.355956 GGCCGTGTAGCGCCTATC 60.356 66.667 2.29 0.00 39.71 2.08
2903 3455 3.151710 TGGCCGTGTAGCGCCTAT 61.152 61.111 2.29 0.00 39.71 2.57
2904 3456 3.833645 CTGGCCGTGTAGCGCCTA 61.834 66.667 2.29 0.00 39.71 3.93
2917 3469 4.830765 TATGGGTGCGACGCTGGC 62.831 66.667 22.08 10.89 31.67 4.85
2918 3470 2.108976 ATATGGGTGCGACGCTGG 59.891 61.111 22.08 0.00 31.67 4.85
2919 3471 1.521457 ACATATGGGTGCGACGCTG 60.521 57.895 22.08 11.28 31.67 5.18
2920 3472 1.521457 CACATATGGGTGCGACGCT 60.521 57.895 22.08 2.17 31.67 5.07
2921 3473 3.014036 CACATATGGGTGCGACGC 58.986 61.111 14.19 14.19 31.10 5.19
2927 3479 1.340893 TGACTTGGGCACATATGGGTG 60.341 52.381 6.86 0.00 41.72 4.61
2928 3480 0.998928 TGACTTGGGCACATATGGGT 59.001 50.000 6.86 0.00 0.00 4.51
2929 3481 1.683943 CTGACTTGGGCACATATGGG 58.316 55.000 7.80 3.61 0.00 4.00
2930 3482 1.027357 GCTGACTTGGGCACATATGG 58.973 55.000 7.80 0.00 0.00 2.74
2931 3483 0.659427 CGCTGACTTGGGCACATATG 59.341 55.000 0.00 0.00 0.00 1.78
2932 3484 0.253044 ACGCTGACTTGGGCACATAT 59.747 50.000 0.00 0.00 0.00 1.78
2933 3485 0.673333 CACGCTGACTTGGGCACATA 60.673 55.000 0.00 0.00 0.00 2.29
2934 3486 1.968017 CACGCTGACTTGGGCACAT 60.968 57.895 0.00 0.00 0.00 3.21
2935 3487 2.591429 CACGCTGACTTGGGCACA 60.591 61.111 0.00 0.00 0.00 4.57
2936 3488 4.030452 GCACGCTGACTTGGGCAC 62.030 66.667 0.00 0.00 0.00 5.01
2937 3489 4.560743 TGCACGCTGACTTGGGCA 62.561 61.111 0.00 0.00 0.00 5.36
2938 3490 3.730761 CTGCACGCTGACTTGGGC 61.731 66.667 0.00 0.00 0.00 5.36
2939 3491 3.730761 GCTGCACGCTGACTTGGG 61.731 66.667 0.00 0.00 35.14 4.12
2940 3492 4.081030 CGCTGCACGCTGACTTGG 62.081 66.667 0.00 0.00 36.13 3.61
2950 3502 3.362399 TAGCTCTCAGGCGCTGCAC 62.362 63.158 7.64 0.00 37.05 4.57
2951 3503 3.070576 TAGCTCTCAGGCGCTGCA 61.071 61.111 7.64 0.00 37.05 4.41
2952 3504 2.279385 CTAGCTCTCAGGCGCTGC 60.279 66.667 7.64 2.66 37.05 5.25
2953 3505 2.416678 CCTAGCTCTCAGGCGCTG 59.583 66.667 7.64 3.67 37.05 5.18
2966 3518 0.458543 CTGTGTAGTGTGGCGCCTAG 60.459 60.000 29.70 7.79 0.00 3.02
2967 3519 1.183030 ACTGTGTAGTGTGGCGCCTA 61.183 55.000 29.70 14.39 35.34 3.93
2968 3520 2.343758 CTGTGTAGTGTGGCGCCT 59.656 61.111 29.70 9.99 0.00 5.52
2969 3521 2.030562 ACTGTGTAGTGTGGCGCC 59.969 61.111 22.73 22.73 35.34 6.53
2977 3529 1.532604 TAGGCGCTGCACTGTGTAGT 61.533 55.000 23.60 9.32 37.75 2.73
2978 3530 0.803768 CTAGGCGCTGCACTGTGTAG 60.804 60.000 19.77 19.77 33.01 2.74
2979 3531 1.215382 CTAGGCGCTGCACTGTGTA 59.785 57.895 7.64 3.78 0.00 2.90
2980 3532 2.047844 CTAGGCGCTGCACTGTGT 60.048 61.111 7.64 0.00 0.00 3.72
2981 3533 3.494336 GCTAGGCGCTGCACTGTG 61.494 66.667 7.64 2.76 35.14 3.66
2992 3544 3.787001 AACGCCCAGGAGCTAGGC 61.787 66.667 6.50 6.50 43.53 3.93
2993 3545 2.187946 CAACGCCCAGGAGCTAGG 59.812 66.667 0.00 0.00 0.00 3.02
2994 3546 2.512515 GCAACGCCCAGGAGCTAG 60.513 66.667 0.00 0.00 0.00 3.42
2995 3547 3.318384 TGCAACGCCCAGGAGCTA 61.318 61.111 0.00 0.00 0.00 3.32
2997 3549 3.605749 TAGTGCAACGCCCAGGAGC 62.606 63.158 0.00 0.00 45.86 4.70
2998 3550 1.448540 CTAGTGCAACGCCCAGGAG 60.449 63.158 0.00 0.00 45.86 3.69
2999 3551 2.214216 ACTAGTGCAACGCCCAGGA 61.214 57.895 0.00 0.00 45.86 3.86
3000 3552 2.034879 CACTAGTGCAACGCCCAGG 61.035 63.158 10.54 0.00 45.86 4.45
3001 3553 3.566261 CACTAGTGCAACGCCCAG 58.434 61.111 10.54 0.00 45.86 4.45
3011 3563 2.816958 CCAGGCGCTGCACTAGTG 60.817 66.667 18.93 18.93 39.95 2.74
3012 3564 4.087892 CCCAGGCGCTGCACTAGT 62.088 66.667 7.64 0.00 0.00 2.57
3023 3575 2.200170 CTTTTGTGTAGCGCCCAGGC 62.200 60.000 2.29 0.00 37.85 4.85
3024 3576 1.586154 CCTTTTGTGTAGCGCCCAGG 61.586 60.000 2.29 0.00 0.00 4.45
3025 3577 1.586154 CCCTTTTGTGTAGCGCCCAG 61.586 60.000 2.29 0.00 0.00 4.45
3026 3578 1.602323 CCCTTTTGTGTAGCGCCCA 60.602 57.895 2.29 0.00 0.00 5.36
3027 3579 1.583495 GACCCTTTTGTGTAGCGCCC 61.583 60.000 2.29 0.00 0.00 6.13
3028 3580 0.887387 TGACCCTTTTGTGTAGCGCC 60.887 55.000 2.29 0.00 0.00 6.53
3029 3581 0.517316 CTGACCCTTTTGTGTAGCGC 59.483 55.000 0.00 0.00 0.00 5.92
3030 3582 1.156736 CCTGACCCTTTTGTGTAGCG 58.843 55.000 0.00 0.00 0.00 4.26
3031 3583 1.534729 CCCTGACCCTTTTGTGTAGC 58.465 55.000 0.00 0.00 0.00 3.58
3032 3584 1.702957 TCCCCTGACCCTTTTGTGTAG 59.297 52.381 0.00 0.00 0.00 2.74
3033 3585 1.702957 CTCCCCTGACCCTTTTGTGTA 59.297 52.381 0.00 0.00 0.00 2.90
3034 3586 0.478507 CTCCCCTGACCCTTTTGTGT 59.521 55.000 0.00 0.00 0.00 3.72
3035 3587 0.478507 ACTCCCCTGACCCTTTTGTG 59.521 55.000 0.00 0.00 0.00 3.33
3036 3588 0.478507 CACTCCCCTGACCCTTTTGT 59.521 55.000 0.00 0.00 0.00 2.83
3037 3589 0.771127 TCACTCCCCTGACCCTTTTG 59.229 55.000 0.00 0.00 0.00 2.44
3038 3590 1.529744 TTCACTCCCCTGACCCTTTT 58.470 50.000 0.00 0.00 0.00 2.27
3039 3591 1.529744 TTTCACTCCCCTGACCCTTT 58.470 50.000 0.00 0.00 0.00 3.11
3040 3592 1.760405 ATTTCACTCCCCTGACCCTT 58.240 50.000 0.00 0.00 0.00 3.95
3041 3593 2.225908 ACTATTTCACTCCCCTGACCCT 60.226 50.000 0.00 0.00 0.00 4.34
3042 3594 2.197465 ACTATTTCACTCCCCTGACCC 58.803 52.381 0.00 0.00 0.00 4.46
3043 3595 4.262617 GAAACTATTTCACTCCCCTGACC 58.737 47.826 0.00 0.00 39.45 4.02
3044 3596 3.933332 CGAAACTATTTCACTCCCCTGAC 59.067 47.826 2.50 0.00 39.63 3.51
3045 3597 3.581332 ACGAAACTATTTCACTCCCCTGA 59.419 43.478 0.00 0.00 39.63 3.86
3046 3598 3.939066 ACGAAACTATTTCACTCCCCTG 58.061 45.455 0.00 0.00 39.63 4.45
3047 3599 5.485620 GTTACGAAACTATTTCACTCCCCT 58.514 41.667 0.00 0.00 39.63 4.79
3048 3600 4.633126 GGTTACGAAACTATTTCACTCCCC 59.367 45.833 0.00 0.00 39.63 4.81
3049 3601 5.240121 TGGTTACGAAACTATTTCACTCCC 58.760 41.667 0.00 0.00 39.63 4.30
3050 3602 5.930569 ACTGGTTACGAAACTATTTCACTCC 59.069 40.000 0.00 0.38 39.63 3.85
3051 3603 7.170320 TGAACTGGTTACGAAACTATTTCACTC 59.830 37.037 0.00 0.00 39.31 3.51
3052 3604 6.987992 TGAACTGGTTACGAAACTATTTCACT 59.012 34.615 0.00 0.00 39.31 3.41
3053 3605 7.181143 TGAACTGGTTACGAAACTATTTCAC 57.819 36.000 0.00 0.00 39.31 3.18
3054 3606 7.972832 ATGAACTGGTTACGAAACTATTTCA 57.027 32.000 8.89 8.89 44.21 2.69
3055 3607 8.718734 AGAATGAACTGGTTACGAAACTATTTC 58.281 33.333 0.00 0.00 36.73 2.17
3056 3608 8.504005 CAGAATGAACTGGTTACGAAACTATTT 58.496 33.333 0.00 0.00 39.69 1.40
3057 3609 7.660208 ACAGAATGAACTGGTTACGAAACTATT 59.340 33.333 0.00 0.00 39.69 1.73
3058 3610 7.117812 CACAGAATGAACTGGTTACGAAACTAT 59.882 37.037 0.00 0.00 39.69 2.12
3059 3611 6.422701 CACAGAATGAACTGGTTACGAAACTA 59.577 38.462 0.00 0.00 39.69 2.24
3060 3612 5.236478 CACAGAATGAACTGGTTACGAAACT 59.764 40.000 0.00 0.00 39.69 2.66
3061 3613 5.235616 TCACAGAATGAACTGGTTACGAAAC 59.764 40.000 0.00 0.00 39.69 2.78
3062 3614 5.361427 TCACAGAATGAACTGGTTACGAAA 58.639 37.500 0.00 0.00 39.69 3.46
3063 3615 4.951254 TCACAGAATGAACTGGTTACGAA 58.049 39.130 0.00 0.00 39.69 3.85
3064 3616 4.594123 TCACAGAATGAACTGGTTACGA 57.406 40.909 0.00 0.00 39.69 3.43
3065 3617 5.862924 AATCACAGAATGAACTGGTTACG 57.137 39.130 0.00 0.00 41.93 3.18
3066 3618 7.202016 TCAAATCACAGAATGAACTGGTTAC 57.798 36.000 0.00 0.00 41.93 2.50
3067 3619 8.408043 AATCAAATCACAGAATGAACTGGTTA 57.592 30.769 0.00 0.00 41.93 2.85
3068 3620 6.906157 ATCAAATCACAGAATGAACTGGTT 57.094 33.333 0.00 0.00 41.93 3.67
3069 3621 6.906157 AATCAAATCACAGAATGAACTGGT 57.094 33.333 0.00 0.00 41.93 4.00
3070 3622 6.525628 CGAAATCAAATCACAGAATGAACTGG 59.474 38.462 0.00 0.00 41.93 4.00
3071 3623 7.300320 TCGAAATCAAATCACAGAATGAACTG 58.700 34.615 0.00 0.00 41.93 3.16
3072 3624 7.439157 TCGAAATCAAATCACAGAATGAACT 57.561 32.000 0.00 0.00 41.93 3.01
3073 3625 8.679288 AATCGAAATCAAATCACAGAATGAAC 57.321 30.769 0.00 0.00 41.93 3.18
3078 3630 9.613428 ACCTATAATCGAAATCAAATCACAGAA 57.387 29.630 0.00 0.00 0.00 3.02
3079 3631 9.261180 GACCTATAATCGAAATCAAATCACAGA 57.739 33.333 0.00 0.00 0.00 3.41
3080 3632 9.045223 TGACCTATAATCGAAATCAAATCACAG 57.955 33.333 0.00 0.00 0.00 3.66
3081 3633 8.956533 TGACCTATAATCGAAATCAAATCACA 57.043 30.769 0.00 0.00 0.00 3.58
3111 3663 2.030371 TCAGCTGTGGCAAATTTGACA 58.970 42.857 22.97 22.97 45.70 3.58
3112 3664 2.798976 TCAGCTGTGGCAAATTTGAC 57.201 45.000 22.31 19.99 41.70 3.18
3113 3665 2.610976 GCATCAGCTGTGGCAAATTTGA 60.611 45.455 22.31 0.00 41.70 2.69
3114 3666 1.730064 GCATCAGCTGTGGCAAATTTG 59.270 47.619 21.71 14.03 41.70 2.32
3115 3667 2.088950 GCATCAGCTGTGGCAAATTT 57.911 45.000 21.71 0.00 41.70 1.82
3116 3668 3.826637 GCATCAGCTGTGGCAAATT 57.173 47.368 21.71 0.00 41.70 1.82
3127 3679 2.600122 GAAGCAGCAGCAGCATCAGC 62.600 60.000 12.92 1.77 45.49 4.26
3128 3680 1.027255 AGAAGCAGCAGCAGCATCAG 61.027 55.000 16.23 0.00 45.49 2.90
3129 3681 1.002502 AGAAGCAGCAGCAGCATCA 60.003 52.632 16.23 0.00 45.49 3.07
3130 3682 1.306642 ACAGAAGCAGCAGCAGCATC 61.307 55.000 12.92 9.79 45.49 3.91
3131 3683 0.894184 AACAGAAGCAGCAGCAGCAT 60.894 50.000 12.92 0.00 45.49 3.79
3151 3703 1.603739 GCCTTTTCACGGGGAAGCT 60.604 57.895 0.00 0.00 36.72 3.74
3180 3732 3.290948 ACTCTACTAGTGAGAGCCCAG 57.709 52.381 21.64 4.47 43.66 4.45
3181 3733 3.431905 CGTACTCTACTAGTGAGAGCCCA 60.432 52.174 21.64 10.04 43.66 5.36
3182 3734 3.132925 CGTACTCTACTAGTGAGAGCCC 58.867 54.545 21.64 14.05 43.66 5.19
3183 3735 4.053295 CTCGTACTCTACTAGTGAGAGCC 58.947 52.174 21.64 14.28 43.66 4.70
3184 3736 4.685924 ACTCGTACTCTACTAGTGAGAGC 58.314 47.826 21.64 14.59 43.66 4.09
3197 3749 2.481952 ACACGGACAAGTACTCGTACTC 59.518 50.000 9.93 0.00 44.96 2.59
3199 3751 2.481952 AGACACGGACAAGTACTCGTAC 59.518 50.000 6.98 0.00 34.31 3.67
3200 3752 2.771089 AGACACGGACAAGTACTCGTA 58.229 47.619 6.98 0.00 34.31 3.43
3201 3753 1.602311 AGACACGGACAAGTACTCGT 58.398 50.000 0.00 0.00 36.19 4.18
3202 3754 2.287427 ACAAGACACGGACAAGTACTCG 60.287 50.000 0.00 0.00 0.00 4.18
3203 3755 3.366440 ACAAGACACGGACAAGTACTC 57.634 47.619 0.00 0.00 0.00 2.59
3222 3774 7.801752 AGTAGGCGAATAAATACTCGTACTAC 58.198 38.462 14.42 14.42 41.96 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.