Multiple sequence alignment - TraesCS1D01G214600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G214600 chr1D 100.000 3661 0 0 1 3661 299812434 299808774 0.000000e+00 6761
1 TraesCS1D01G214600 chr1A 92.498 3226 162 33 410 3581 374169799 374166600 0.000000e+00 4543
2 TraesCS1D01G214600 chr1B 94.514 1276 65 3 652 1925 404302538 404301266 0.000000e+00 1964
3 TraesCS1D01G214600 chr1B 88.851 1166 71 28 1956 3081 404301267 404300121 0.000000e+00 1378
4 TraesCS1D01G214600 chr1B 85.942 377 40 11 3177 3551 404174116 404173751 1.230000e-104 390
5 TraesCS1D01G214600 chr1B 92.248 258 16 3 413 666 404309152 404308895 2.690000e-96 363
6 TraesCS1D01G214600 chr1B 93.860 114 5 2 3070 3182 404235351 404235239 1.750000e-38 171
7 TraesCS1D01G214600 chr1B 91.525 118 6 3 3544 3661 404004906 404004793 3.780000e-35 159
8 TraesCS1D01G214600 chr6A 96.368 413 11 3 1 412 21625508 21625099 0.000000e+00 676
9 TraesCS1D01G214600 chr6A 93.705 413 23 2 1 412 97584352 97583942 1.870000e-172 616
10 TraesCS1D01G214600 chr7A 96.341 410 8 3 1 405 646092063 646091656 0.000000e+00 667
11 TraesCS1D01G214600 chr7A 96.314 407 11 4 1 405 546645357 546645761 0.000000e+00 665
12 TraesCS1D01G214600 chr5A 96.069 407 13 3 1 406 662405105 662405509 0.000000e+00 660
13 TraesCS1D01G214600 chr4B 95.181 415 16 3 1 413 451064560 451064148 0.000000e+00 652
14 TraesCS1D01G214600 chr2A 95.949 395 11 3 19 412 29487091 29486701 1.430000e-178 636
15 TraesCS1D01G214600 chr7D 94.189 413 19 4 1 412 30383631 30383223 3.100000e-175 625
16 TraesCS1D01G214600 chr6D 94.892 372 15 3 42 412 350207479 350207847 2.450000e-161 579
17 TraesCS1D01G214600 chr3A 89.412 85 9 0 3115 3199 382362660 382362576 1.390000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G214600 chr1D 299808774 299812434 3660 True 6761 6761 100.0000 1 3661 1 chr1D.!!$R1 3660
1 TraesCS1D01G214600 chr1A 374166600 374169799 3199 True 4543 4543 92.4980 410 3581 1 chr1A.!!$R1 3171
2 TraesCS1D01G214600 chr1B 404300121 404302538 2417 True 1671 1964 91.6825 652 3081 2 chr1B.!!$R5 2429

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.036010 CGGAGCCTGAATCACCAGTT 60.036 55.0 0.00 0.00 32.43 3.16 F
247 248 0.039618 GAAGGCAATCACCTGGGGAA 59.960 55.0 1.04 0.00 39.93 3.97 F
1688 1719 0.038159 AGCTGTTCTACACGTGGCTC 60.038 55.0 21.57 6.06 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1176 1198 0.238553 GCTTCTTCTTGTGGCCGAAC 59.761 55.0 0.00 0.00 0.00 3.95 R
1991 2022 0.311790 CGACCTGCATGCAAAGTGTT 59.688 50.0 23.64 1.08 0.00 3.32 R
3605 3716 0.038744 ATGTGCCCTCCTTCACTTGG 59.961 55.0 0.00 0.00 34.49 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.414269 CATGTGTATGCATATGCCTCCA 58.586 45.455 24.54 14.53 37.40 3.86
29 30 3.793819 TGTGTATGCATATGCCTCCAT 57.206 42.857 24.54 13.58 41.18 3.41
30 31 3.414269 TGTGTATGCATATGCCTCCATG 58.586 45.455 24.54 0.00 41.18 3.66
31 32 2.163010 GTGTATGCATATGCCTCCATGC 59.837 50.000 24.54 14.64 46.21 4.06
34 35 1.962144 GCATATGCCTCCATGCACC 59.038 57.895 17.26 0.00 45.48 5.01
35 36 0.824595 GCATATGCCTCCATGCACCA 60.825 55.000 17.26 0.00 45.48 4.17
36 37 1.244816 CATATGCCTCCATGCACCAG 58.755 55.000 0.00 0.00 45.48 4.00
37 38 0.538977 ATATGCCTCCATGCACCAGC 60.539 55.000 0.00 0.00 45.48 4.85
38 39 2.629424 TATGCCTCCATGCACCAGCC 62.629 60.000 0.00 0.00 45.48 4.85
40 41 3.736224 CCTCCATGCACCAGCCCT 61.736 66.667 0.00 0.00 41.13 5.19
41 42 2.439701 CTCCATGCACCAGCCCTG 60.440 66.667 0.00 0.00 41.13 4.45
42 43 3.259314 TCCATGCACCAGCCCTGT 61.259 61.111 0.00 0.00 41.13 4.00
43 44 3.066190 CCATGCACCAGCCCTGTG 61.066 66.667 0.00 0.00 41.13 3.66
44 45 2.282674 CATGCACCAGCCCTGTGT 60.283 61.111 0.00 0.00 41.13 3.72
45 46 2.282674 ATGCACCAGCCCTGTGTG 60.283 61.111 0.00 10.57 41.13 3.82
47 48 4.962836 GCACCAGCCCTGTGTGCT 62.963 66.667 22.93 0.00 45.54 4.40
48 49 2.203394 CACCAGCCCTGTGTGCTT 60.203 61.111 4.69 0.00 36.81 3.91
49 50 2.113986 ACCAGCCCTGTGTGCTTC 59.886 61.111 0.00 0.00 36.81 3.86
50 51 2.674380 CCAGCCCTGTGTGCTTCC 60.674 66.667 0.00 0.00 36.81 3.46
51 52 2.674380 CAGCCCTGTGTGCTTCCC 60.674 66.667 0.00 0.00 36.81 3.97
52 53 3.971702 AGCCCTGTGTGCTTCCCC 61.972 66.667 0.00 0.00 34.87 4.81
53 54 3.971702 GCCCTGTGTGCTTCCCCT 61.972 66.667 0.00 0.00 0.00 4.79
54 55 2.034687 CCCTGTGTGCTTCCCCTG 59.965 66.667 0.00 0.00 0.00 4.45
55 56 2.528818 CCCTGTGTGCTTCCCCTGA 61.529 63.158 0.00 0.00 0.00 3.86
56 57 1.687612 CCTGTGTGCTTCCCCTGAT 59.312 57.895 0.00 0.00 0.00 2.90
57 58 0.393537 CCTGTGTGCTTCCCCTGATC 60.394 60.000 0.00 0.00 0.00 2.92
58 59 0.325933 CTGTGTGCTTCCCCTGATCA 59.674 55.000 0.00 0.00 0.00 2.92
59 60 0.994247 TGTGTGCTTCCCCTGATCAT 59.006 50.000 0.00 0.00 0.00 2.45
60 61 2.171237 CTGTGTGCTTCCCCTGATCATA 59.829 50.000 0.00 0.00 0.00 2.15
61 62 2.092968 TGTGTGCTTCCCCTGATCATAC 60.093 50.000 0.00 0.00 0.00 2.39
62 63 2.171448 GTGTGCTTCCCCTGATCATACT 59.829 50.000 0.00 0.00 0.00 2.12
63 64 2.435805 TGTGCTTCCCCTGATCATACTC 59.564 50.000 0.00 0.00 0.00 2.59
64 65 2.050144 TGCTTCCCCTGATCATACTCC 58.950 52.381 0.00 0.00 0.00 3.85
65 66 2.050144 GCTTCCCCTGATCATACTCCA 58.950 52.381 0.00 0.00 0.00 3.86
66 67 2.439507 GCTTCCCCTGATCATACTCCAA 59.560 50.000 0.00 0.00 0.00 3.53
67 68 3.495806 GCTTCCCCTGATCATACTCCAAG 60.496 52.174 0.00 0.00 0.00 3.61
68 69 2.050144 TCCCCTGATCATACTCCAAGC 58.950 52.381 0.00 0.00 0.00 4.01
69 70 1.072965 CCCCTGATCATACTCCAAGCC 59.927 57.143 0.00 0.00 0.00 4.35
70 71 1.770658 CCCTGATCATACTCCAAGCCA 59.229 52.381 0.00 0.00 0.00 4.75
71 72 2.374504 CCCTGATCATACTCCAAGCCAT 59.625 50.000 0.00 0.00 0.00 4.40
72 73 3.584406 CCCTGATCATACTCCAAGCCATA 59.416 47.826 0.00 0.00 0.00 2.74
73 74 4.323333 CCCTGATCATACTCCAAGCCATAG 60.323 50.000 0.00 0.00 0.00 2.23
74 75 4.529769 CCTGATCATACTCCAAGCCATAGA 59.470 45.833 0.00 0.00 0.00 1.98
75 76 5.337410 CCTGATCATACTCCAAGCCATAGAG 60.337 48.000 0.00 0.00 0.00 2.43
76 77 5.397360 TGATCATACTCCAAGCCATAGAGA 58.603 41.667 0.00 0.00 0.00 3.10
77 78 6.021672 TGATCATACTCCAAGCCATAGAGAT 58.978 40.000 0.00 0.00 0.00 2.75
78 79 5.991933 TCATACTCCAAGCCATAGAGATC 57.008 43.478 0.00 0.00 0.00 2.75
79 80 5.397360 TCATACTCCAAGCCATAGAGATCA 58.603 41.667 0.00 0.00 0.00 2.92
80 81 6.021672 TCATACTCCAAGCCATAGAGATCAT 58.978 40.000 0.00 0.00 0.00 2.45
81 82 4.888326 ACTCCAAGCCATAGAGATCATC 57.112 45.455 0.00 0.00 0.00 2.92
82 83 3.582208 ACTCCAAGCCATAGAGATCATCC 59.418 47.826 0.00 0.00 0.00 3.51
83 84 3.581770 CTCCAAGCCATAGAGATCATCCA 59.418 47.826 0.00 0.00 0.00 3.41
84 85 3.581770 TCCAAGCCATAGAGATCATCCAG 59.418 47.826 0.00 0.00 0.00 3.86
85 86 3.581770 CCAAGCCATAGAGATCATCCAGA 59.418 47.826 0.00 0.00 0.00 3.86
86 87 4.225492 CCAAGCCATAGAGATCATCCAGAT 59.775 45.833 0.00 0.00 40.48 2.90
97 98 4.785575 TCCAGATCGGAGCCTGAA 57.214 55.556 10.59 0.00 39.64 3.02
98 99 3.230608 TCCAGATCGGAGCCTGAAT 57.769 52.632 10.59 0.00 39.64 2.57
99 100 1.043816 TCCAGATCGGAGCCTGAATC 58.956 55.000 10.59 0.00 39.64 2.52
100 101 0.755079 CCAGATCGGAGCCTGAATCA 59.245 55.000 10.59 0.00 36.56 2.57
101 102 1.539929 CCAGATCGGAGCCTGAATCAC 60.540 57.143 10.59 0.00 36.56 3.06
102 103 0.755686 AGATCGGAGCCTGAATCACC 59.244 55.000 0.00 0.00 0.00 4.02
103 104 0.465705 GATCGGAGCCTGAATCACCA 59.534 55.000 0.00 0.00 0.00 4.17
104 105 0.467384 ATCGGAGCCTGAATCACCAG 59.533 55.000 0.00 0.00 0.00 4.00
105 106 0.904865 TCGGAGCCTGAATCACCAGT 60.905 55.000 0.00 0.00 32.43 4.00
106 107 0.036010 CGGAGCCTGAATCACCAGTT 60.036 55.000 0.00 0.00 32.43 3.16
107 108 1.207089 CGGAGCCTGAATCACCAGTTA 59.793 52.381 0.00 0.00 32.43 2.24
108 109 2.739932 CGGAGCCTGAATCACCAGTTAG 60.740 54.545 0.00 0.00 32.43 2.34
109 110 2.284190 GAGCCTGAATCACCAGTTAGC 58.716 52.381 0.00 0.00 32.43 3.09
110 111 1.912043 AGCCTGAATCACCAGTTAGCT 59.088 47.619 0.00 0.00 32.43 3.32
111 112 2.012673 GCCTGAATCACCAGTTAGCTG 58.987 52.381 0.00 0.00 42.22 4.24
112 113 2.012673 CCTGAATCACCAGTTAGCTGC 58.987 52.381 0.17 0.00 41.26 5.25
113 114 2.012673 CTGAATCACCAGTTAGCTGCC 58.987 52.381 0.17 0.00 41.26 4.85
114 115 1.350684 TGAATCACCAGTTAGCTGCCA 59.649 47.619 0.17 0.00 41.26 4.92
115 116 2.012673 GAATCACCAGTTAGCTGCCAG 58.987 52.381 0.17 0.00 41.26 4.85
116 117 1.279496 ATCACCAGTTAGCTGCCAGA 58.721 50.000 0.17 0.00 41.26 3.86
117 118 1.279496 TCACCAGTTAGCTGCCAGAT 58.721 50.000 0.17 0.00 41.26 2.90
118 119 1.208052 TCACCAGTTAGCTGCCAGATC 59.792 52.381 0.17 0.00 41.26 2.75
119 120 1.209019 CACCAGTTAGCTGCCAGATCT 59.791 52.381 0.17 0.00 41.26 2.75
120 121 1.209019 ACCAGTTAGCTGCCAGATCTG 59.791 52.381 16.24 16.24 41.26 2.90
121 122 1.483827 CCAGTTAGCTGCCAGATCTGA 59.516 52.381 24.62 3.99 41.26 3.27
122 123 2.093288 CCAGTTAGCTGCCAGATCTGAA 60.093 50.000 24.62 10.80 41.26 3.02
123 124 3.603532 CAGTTAGCTGCCAGATCTGAAA 58.396 45.455 24.62 10.43 35.77 2.69
124 125 4.005650 CAGTTAGCTGCCAGATCTGAAAA 58.994 43.478 24.62 7.93 35.77 2.29
125 126 4.094590 CAGTTAGCTGCCAGATCTGAAAAG 59.905 45.833 24.62 17.37 35.77 2.27
126 127 4.019860 AGTTAGCTGCCAGATCTGAAAAGA 60.020 41.667 24.62 1.86 0.00 2.52
127 128 3.648507 AGCTGCCAGATCTGAAAAGAT 57.351 42.857 24.62 13.34 0.00 2.40
128 129 3.543665 AGCTGCCAGATCTGAAAAGATC 58.456 45.455 24.62 7.50 43.63 2.75
129 130 2.287373 GCTGCCAGATCTGAAAAGATCG 59.713 50.000 24.62 5.66 46.74 3.69
130 131 2.871022 CTGCCAGATCTGAAAAGATCGG 59.129 50.000 24.62 15.90 46.74 4.18
135 136 5.476752 CAGATCTGAAAAGATCGGGAAAC 57.523 43.478 18.34 0.00 46.74 2.78
136 137 5.181748 CAGATCTGAAAAGATCGGGAAACT 58.818 41.667 18.34 0.00 46.74 2.66
137 138 6.341316 CAGATCTGAAAAGATCGGGAAACTA 58.659 40.000 18.34 0.00 46.74 2.24
138 139 6.818644 CAGATCTGAAAAGATCGGGAAACTAA 59.181 38.462 18.34 0.00 46.74 2.24
139 140 6.819146 AGATCTGAAAAGATCGGGAAACTAAC 59.181 38.462 9.46 0.00 46.74 2.34
140 141 5.860611 TCTGAAAAGATCGGGAAACTAACA 58.139 37.500 0.00 0.00 34.95 2.41
141 142 6.292923 TCTGAAAAGATCGGGAAACTAACAA 58.707 36.000 0.00 0.00 34.95 2.83
142 143 6.204108 TCTGAAAAGATCGGGAAACTAACAAC 59.796 38.462 0.00 0.00 34.95 3.32
143 144 5.823570 TGAAAAGATCGGGAAACTAACAACA 59.176 36.000 0.00 0.00 0.00 3.33
144 145 6.488683 TGAAAAGATCGGGAAACTAACAACAT 59.511 34.615 0.00 0.00 0.00 2.71
145 146 5.880054 AAGATCGGGAAACTAACAACATG 57.120 39.130 0.00 0.00 0.00 3.21
146 147 4.261801 AGATCGGGAAACTAACAACATGG 58.738 43.478 0.00 0.00 0.00 3.66
147 148 2.785562 TCGGGAAACTAACAACATGGG 58.214 47.619 0.00 0.00 0.00 4.00
148 149 2.372504 TCGGGAAACTAACAACATGGGA 59.627 45.455 0.00 0.00 0.00 4.37
149 150 2.486592 CGGGAAACTAACAACATGGGAC 59.513 50.000 0.00 0.00 0.00 4.46
150 151 2.486592 GGGAAACTAACAACATGGGACG 59.513 50.000 0.00 0.00 0.00 4.79
151 152 3.404899 GGAAACTAACAACATGGGACGA 58.595 45.455 0.00 0.00 0.00 4.20
152 153 3.187842 GGAAACTAACAACATGGGACGAC 59.812 47.826 0.00 0.00 0.00 4.34
153 154 2.074547 ACTAACAACATGGGACGACG 57.925 50.000 0.00 0.00 0.00 5.12
154 155 1.614903 ACTAACAACATGGGACGACGA 59.385 47.619 0.00 0.00 0.00 4.20
155 156 1.990563 CTAACAACATGGGACGACGAC 59.009 52.381 0.00 0.00 0.00 4.34
156 157 0.942410 AACAACATGGGACGACGACG 60.942 55.000 5.58 5.58 45.75 5.12
157 158 2.092291 CAACATGGGACGACGACGG 61.092 63.158 12.58 0.00 44.46 4.79
164 165 2.278013 GACGACGACGGCCAGATC 60.278 66.667 12.58 0.00 42.35 2.75
165 166 4.175489 ACGACGACGGCCAGATCG 62.175 66.667 17.05 17.05 44.46 3.69
166 167 4.907034 CGACGACGGCCAGATCGG 62.907 72.222 21.19 4.89 42.67 4.18
167 168 4.570663 GACGACGGCCAGATCGGG 62.571 72.222 21.19 7.64 42.67 5.14
169 170 4.271816 CGACGGCCAGATCGGGAG 62.272 72.222 16.86 10.82 34.67 4.30
170 171 2.833582 GACGGCCAGATCGGGAGA 60.834 66.667 16.86 0.00 46.90 3.71
171 172 3.140225 GACGGCCAGATCGGGAGAC 62.140 68.421 16.86 5.41 44.82 3.36
172 173 3.147595 CGGCCAGATCGGGAGACA 61.148 66.667 16.86 0.00 44.82 3.41
173 174 2.501610 GGCCAGATCGGGAGACAC 59.498 66.667 16.86 0.00 44.82 3.67
174 175 2.501610 GCCAGATCGGGAGACACC 59.498 66.667 16.86 0.00 44.82 4.16
175 176 2.359169 GCCAGATCGGGAGACACCA 61.359 63.158 16.86 0.00 44.82 4.17
176 177 1.690219 GCCAGATCGGGAGACACCAT 61.690 60.000 16.86 0.00 44.82 3.55
177 178 0.105593 CCAGATCGGGAGACACCATG 59.894 60.000 5.91 0.00 44.82 3.66
178 179 0.531532 CAGATCGGGAGACACCATGC 60.532 60.000 0.00 0.00 44.82 4.06
179 180 1.227674 GATCGGGAGACACCATGCC 60.228 63.158 0.00 0.00 44.82 4.40
180 181 1.971505 GATCGGGAGACACCATGCCA 61.972 60.000 0.00 0.00 44.82 4.92
181 182 1.348008 ATCGGGAGACACCATGCCAT 61.348 55.000 0.00 0.00 44.82 4.40
182 183 1.820906 CGGGAGACACCATGCCATG 60.821 63.158 0.00 0.00 41.20 3.66
194 195 2.927028 CATGCCATGGACAGATCAAGA 58.073 47.619 18.40 0.00 0.00 3.02
195 196 3.284617 CATGCCATGGACAGATCAAGAA 58.715 45.455 18.40 0.00 0.00 2.52
196 197 2.995283 TGCCATGGACAGATCAAGAAG 58.005 47.619 18.40 0.00 0.00 2.85
197 198 1.674962 GCCATGGACAGATCAAGAAGC 59.325 52.381 18.40 0.00 0.00 3.86
198 199 1.938577 CCATGGACAGATCAAGAAGCG 59.061 52.381 5.56 0.00 0.00 4.68
199 200 2.419159 CCATGGACAGATCAAGAAGCGA 60.419 50.000 5.56 0.00 0.00 4.93
200 201 2.662006 TGGACAGATCAAGAAGCGAG 57.338 50.000 0.00 0.00 0.00 5.03
201 202 1.285578 GGACAGATCAAGAAGCGAGC 58.714 55.000 0.00 0.00 0.00 5.03
202 203 0.919981 GACAGATCAAGAAGCGAGCG 59.080 55.000 0.00 0.00 0.00 5.03
203 204 0.459237 ACAGATCAAGAAGCGAGCGG 60.459 55.000 0.00 0.00 0.00 5.52
204 205 1.520342 AGATCAAGAAGCGAGCGGC 60.520 57.895 0.00 0.00 44.05 6.53
223 224 2.425592 TGGGACAACGACAGCCAG 59.574 61.111 0.00 0.00 31.92 4.85
224 225 2.137528 TGGGACAACGACAGCCAGA 61.138 57.895 0.00 0.00 31.92 3.86
225 226 1.296715 GGGACAACGACAGCCAGAT 59.703 57.895 0.00 0.00 0.00 2.90
226 227 0.741221 GGGACAACGACAGCCAGATC 60.741 60.000 0.00 0.00 0.00 2.75
227 228 1.078759 GGACAACGACAGCCAGATCG 61.079 60.000 0.00 0.00 43.97 3.69
228 229 1.078759 GACAACGACAGCCAGATCGG 61.079 60.000 0.00 0.00 42.67 4.18
229 230 1.215382 CAACGACAGCCAGATCGGA 59.785 57.895 7.64 0.00 42.67 4.55
230 231 0.389817 CAACGACAGCCAGATCGGAA 60.390 55.000 7.64 0.00 42.67 4.30
231 232 0.108615 AACGACAGCCAGATCGGAAG 60.109 55.000 7.64 2.18 42.67 3.46
232 233 1.227089 CGACAGCCAGATCGGAAGG 60.227 63.158 7.64 0.71 36.56 3.46
238 239 3.786656 CCAGATCGGAAGGCAATCA 57.213 52.632 0.00 0.00 36.56 2.57
239 240 1.303309 CCAGATCGGAAGGCAATCAC 58.697 55.000 0.00 0.00 36.56 3.06
240 241 1.303309 CAGATCGGAAGGCAATCACC 58.697 55.000 0.00 0.00 0.00 4.02
241 242 1.134280 CAGATCGGAAGGCAATCACCT 60.134 52.381 0.00 0.00 43.91 4.00
242 243 1.134280 AGATCGGAAGGCAATCACCTG 60.134 52.381 0.00 0.00 39.93 4.00
243 244 0.107017 ATCGGAAGGCAATCACCTGG 60.107 55.000 0.00 0.00 39.93 4.45
244 245 1.750399 CGGAAGGCAATCACCTGGG 60.750 63.158 0.00 0.00 39.93 4.45
245 246 1.380380 GGAAGGCAATCACCTGGGG 60.380 63.158 0.00 0.00 39.93 4.96
246 247 1.691219 GAAGGCAATCACCTGGGGA 59.309 57.895 0.00 0.00 39.93 4.81
247 248 0.039618 GAAGGCAATCACCTGGGGAA 59.960 55.000 1.04 0.00 39.93 3.97
248 249 0.486879 AAGGCAATCACCTGGGGAAA 59.513 50.000 1.04 0.00 39.93 3.13
249 250 0.040204 AGGCAATCACCTGGGGAAAG 59.960 55.000 1.04 0.00 39.13 2.62
250 251 0.039618 GGCAATCACCTGGGGAAAGA 59.960 55.000 1.04 0.00 0.00 2.52
251 252 1.549950 GGCAATCACCTGGGGAAAGAA 60.550 52.381 1.04 0.00 0.00 2.52
252 253 2.460669 GCAATCACCTGGGGAAAGAAT 58.539 47.619 1.04 0.00 0.00 2.40
253 254 3.627237 GGCAATCACCTGGGGAAAGAATA 60.627 47.826 1.04 0.00 0.00 1.75
254 255 3.633986 GCAATCACCTGGGGAAAGAATAG 59.366 47.826 1.04 0.00 0.00 1.73
255 256 4.628715 GCAATCACCTGGGGAAAGAATAGA 60.629 45.833 1.04 0.00 0.00 1.98
256 257 5.509498 CAATCACCTGGGGAAAGAATAGAA 58.491 41.667 1.04 0.00 0.00 2.10
257 258 5.796502 ATCACCTGGGGAAAGAATAGAAA 57.203 39.130 1.04 0.00 0.00 2.52
258 259 5.592587 TCACCTGGGGAAAGAATAGAAAA 57.407 39.130 0.00 0.00 0.00 2.29
259 260 5.959512 TCACCTGGGGAAAGAATAGAAAAA 58.040 37.500 0.00 0.00 0.00 1.94
274 275 3.850508 AAAAACGGGCTGGGACAC 58.149 55.556 0.00 0.00 0.00 3.67
275 276 1.830847 AAAAACGGGCTGGGACACC 60.831 57.895 0.00 0.00 37.24 4.16
276 277 3.802852 AAAACGGGCTGGGACACCC 62.803 63.158 0.00 0.00 45.71 4.61
330 331 4.111016 GGCGGCGGCAAGGTAAAC 62.111 66.667 29.41 0.00 42.47 2.01
331 332 4.454717 GCGGCGGCAAGGTAAACG 62.455 66.667 9.78 0.00 39.62 3.60
332 333 3.795342 CGGCGGCAAGGTAAACGG 61.795 66.667 10.53 0.00 0.00 4.44
333 334 3.436924 GGCGGCAAGGTAAACGGG 61.437 66.667 3.07 0.00 0.00 5.28
334 335 3.436924 GCGGCAAGGTAAACGGGG 61.437 66.667 0.00 0.00 0.00 5.73
335 336 3.436924 CGGCAAGGTAAACGGGGC 61.437 66.667 0.00 0.00 0.00 5.80
336 337 2.035155 GGCAAGGTAAACGGGGCT 59.965 61.111 0.00 0.00 0.00 5.19
337 338 2.340328 GGCAAGGTAAACGGGGCTG 61.340 63.158 0.00 0.00 0.00 4.85
338 339 2.989881 GCAAGGTAAACGGGGCTGC 61.990 63.158 0.00 0.00 0.00 5.25
339 340 2.359478 AAGGTAAACGGGGCTGCG 60.359 61.111 0.00 0.00 0.00 5.18
340 341 3.186656 AAGGTAAACGGGGCTGCGT 62.187 57.895 0.00 0.00 0.00 5.24
341 342 3.428282 GGTAAACGGGGCTGCGTG 61.428 66.667 0.00 0.00 0.00 5.34
342 343 3.428282 GTAAACGGGGCTGCGTGG 61.428 66.667 0.00 0.00 0.00 4.94
343 344 3.627952 TAAACGGGGCTGCGTGGA 61.628 61.111 0.00 0.00 0.00 4.02
344 345 3.179888 TAAACGGGGCTGCGTGGAA 62.180 57.895 0.00 0.00 0.00 3.53
352 353 4.785453 CTGCGTGGAAGGGCCTCC 62.785 72.222 6.46 10.93 37.63 4.30
355 356 3.702048 CGTGGAAGGGCCTCCGAA 61.702 66.667 6.46 0.00 38.44 4.30
356 357 2.269241 GTGGAAGGGCCTCCGAAG 59.731 66.667 6.46 0.00 38.44 3.79
357 358 3.009115 TGGAAGGGCCTCCGAAGG 61.009 66.667 6.46 0.00 46.44 3.46
358 359 3.864983 TGGAAGGGCCTCCGAAGGT 62.865 63.158 6.46 0.00 45.34 3.50
359 360 2.465010 TGGAAGGGCCTCCGAAGGTA 62.465 60.000 6.46 0.00 45.34 3.08
390 391 4.182132 CTGCAGAGTCGCTGGAAG 57.818 61.111 8.42 0.00 44.82 3.46
401 402 4.148825 CTGGAAGCGACCCGGGAG 62.149 72.222 32.02 21.87 0.00 4.30
416 417 2.123428 GGAGGCTAGCGGGTACGAA 61.123 63.158 9.00 0.00 44.60 3.85
430 431 3.057526 GGGTACGAAAAGAAATTGCAGCT 60.058 43.478 0.00 0.00 0.00 4.24
501 502 0.973632 TCAACAGATGGCGTACACCT 59.026 50.000 0.85 0.00 0.00 4.00
543 552 1.231641 CCAAACCCCACCACTTCCA 59.768 57.895 0.00 0.00 0.00 3.53
544 553 0.827507 CCAAACCCCACCACTTCCAG 60.828 60.000 0.00 0.00 0.00 3.86
570 579 3.259876 ACATGCATCTGGAAAAACATGCT 59.740 39.130 0.00 0.00 41.89 3.79
617 626 4.172505 GTGCACACAATCAAAAGTCACAA 58.827 39.130 13.17 0.00 0.00 3.33
727 736 0.179048 TATGGCATCTGGTTGCTCCG 60.179 55.000 1.65 0.00 42.38 4.63
733 742 3.414700 CTGGTTGCTCCGTCGTGC 61.415 66.667 0.00 0.00 39.52 5.34
738 747 2.942796 TTGCTCCGTCGTGCCTCAT 61.943 57.895 5.26 0.00 0.00 2.90
751 760 3.201494 CTCATGAGAGGGACGCGT 58.799 61.111 18.34 13.85 38.26 6.01
899 919 1.886313 CGCGCTTGCTCTGATCCAT 60.886 57.895 5.56 0.00 36.08 3.41
1152 1174 3.589654 CTCCTCGGCCAACTTCGCA 62.590 63.158 2.24 0.00 0.00 5.10
1201 1223 0.600057 CCACAAGAAGAAGCCAAGCC 59.400 55.000 0.00 0.00 0.00 4.35
1626 1648 0.317160 TCAGCGGCCGAGTATATTGG 59.683 55.000 33.48 6.19 35.19 3.16
1651 1673 0.106569 TGATGGATGGTCATGGCACC 60.107 55.000 0.00 0.00 36.90 5.01
1688 1719 0.038159 AGCTGTTCTACACGTGGCTC 60.038 55.000 21.57 6.06 0.00 4.70
1925 1956 1.904771 CAGACGCACTCCCCCATAA 59.095 57.895 0.00 0.00 0.00 1.90
1926 1957 0.462047 CAGACGCACTCCCCCATAAC 60.462 60.000 0.00 0.00 0.00 1.89
1927 1958 0.907704 AGACGCACTCCCCCATAACA 60.908 55.000 0.00 0.00 0.00 2.41
1928 1959 0.743345 GACGCACTCCCCCATAACAC 60.743 60.000 0.00 0.00 0.00 3.32
1929 1960 1.298340 CGCACTCCCCCATAACACA 59.702 57.895 0.00 0.00 0.00 3.72
1930 1961 0.744414 CGCACTCCCCCATAACACAG 60.744 60.000 0.00 0.00 0.00 3.66
1931 1962 1.032114 GCACTCCCCCATAACACAGC 61.032 60.000 0.00 0.00 0.00 4.40
1932 1963 0.744414 CACTCCCCCATAACACAGCG 60.744 60.000 0.00 0.00 0.00 5.18
1933 1964 1.819632 CTCCCCCATAACACAGCGC 60.820 63.158 0.00 0.00 0.00 5.92
1934 1965 3.202001 CCCCCATAACACAGCGCG 61.202 66.667 0.00 0.00 0.00 6.86
1935 1966 3.876198 CCCCATAACACAGCGCGC 61.876 66.667 26.66 26.66 0.00 6.86
1958 1989 1.858399 GCGCACACACACTTGTTTACC 60.858 52.381 0.30 0.00 31.66 2.85
1989 2020 1.068753 CCATCTGACAGCTAGGGCG 59.931 63.158 0.00 0.00 44.37 6.13
1991 2022 2.060383 ATCTGACAGCTAGGGCGCA 61.060 57.895 10.83 0.00 44.37 6.09
1996 2036 2.046892 CAGCTAGGGCGCAACACT 60.047 61.111 10.83 3.87 44.37 3.55
2125 2165 3.375610 ACGCAACAATCACGGCAAATATA 59.624 39.130 0.00 0.00 0.00 0.86
2167 2238 3.402778 CGTTCTCTTCACGTACGTACTC 58.597 50.000 22.34 5.22 32.80 2.59
2188 2259 1.004560 CTCCGGTGTGACTGCATGT 60.005 57.895 0.00 0.00 0.00 3.21
2273 2344 2.993853 CAGGAGGTGGAAGGGCTC 59.006 66.667 0.00 0.00 0.00 4.70
2298 2369 4.100084 CCATGCGGCTGTCCAGGA 62.100 66.667 0.00 0.00 0.00 3.86
2473 2544 4.925646 CCTTTGCTTTTCTAAGTGCCATTC 59.074 41.667 0.00 0.00 33.74 2.67
2474 2545 3.829886 TGCTTTTCTAAGTGCCATTCG 57.170 42.857 0.00 0.00 33.74 3.34
2475 2546 3.146066 TGCTTTTCTAAGTGCCATTCGT 58.854 40.909 0.00 0.00 33.74 3.85
2476 2547 4.320023 TGCTTTTCTAAGTGCCATTCGTA 58.680 39.130 0.00 0.00 33.74 3.43
2506 2578 9.119329 CGACTAGTTGCACTATATCTACATTTC 57.881 37.037 0.00 0.00 29.08 2.17
2648 2720 4.742201 GCGACTGCAGCTTCCGGA 62.742 66.667 15.27 0.00 42.15 5.14
2884 2958 1.001269 GTGGGTTTCCTGGGTAGGC 60.001 63.158 0.00 0.00 44.22 3.93
2894 2968 1.680338 CTGGGTAGGCAGGCATAAAC 58.320 55.000 0.00 0.00 0.00 2.01
2934 3041 4.871933 ATTTGAACCATTTGGAGACCAC 57.128 40.909 3.01 0.00 38.94 4.16
2936 3043 1.165270 GAACCATTTGGAGACCACCG 58.835 55.000 3.01 0.00 38.94 4.94
2948 3055 0.674534 GACCACCGACAAGACTCTGT 59.325 55.000 0.00 0.00 0.00 3.41
3004 3111 3.698463 CAAACGTCCGCGAACGCT 61.698 61.111 20.39 1.34 46.40 5.07
3012 3119 3.399770 CGCGAACGCTTCCGAACA 61.400 61.111 16.66 0.00 39.32 3.18
3021 3128 2.161609 ACGCTTCCGAACATCCAAATTC 59.838 45.455 0.00 0.00 38.29 2.17
3031 3138 0.536724 ATCCAAATTCCGGCAAAGCC 59.463 50.000 0.00 0.00 46.75 4.35
3083 3190 1.069596 CCAGCCAACCAAAAGCCAC 59.930 57.895 0.00 0.00 0.00 5.01
3086 3193 0.763986 AGCCAACCAAAAGCCACCAT 60.764 50.000 0.00 0.00 0.00 3.55
3122 3230 2.284699 CCCGTCCCTCCTCAACCT 60.285 66.667 0.00 0.00 0.00 3.50
3126 3234 1.891616 GTCCCTCCTCAACCTCGAC 59.108 63.158 0.00 0.00 0.00 4.20
3130 3238 0.460987 CCTCCTCAACCTCGACATGC 60.461 60.000 0.00 0.00 0.00 4.06
3136 3244 0.179181 CAACCTCGACATGCACATGC 60.179 55.000 10.50 0.00 42.39 4.06
3152 3260 3.002656 CACATGCGTAGATGGATGAAACC 59.997 47.826 9.88 0.00 39.78 3.27
3180 3288 8.757982 ATAAATATGGGATAGCATTGGATGAC 57.242 34.615 0.00 0.00 0.00 3.06
3197 3305 0.031010 GACTCCACCCCCTATCCTGT 60.031 60.000 0.00 0.00 0.00 4.00
3198 3306 0.031010 ACTCCACCCCCTATCCTGTC 60.031 60.000 0.00 0.00 0.00 3.51
3199 3307 0.764752 CTCCACCCCCTATCCTGTCC 60.765 65.000 0.00 0.00 0.00 4.02
3200 3308 2.140792 CCACCCCCTATCCTGTCCG 61.141 68.421 0.00 0.00 0.00 4.79
3201 3309 1.382695 CACCCCCTATCCTGTCCGT 60.383 63.158 0.00 0.00 0.00 4.69
3207 3315 0.460284 CCTATCCTGTCCGTGCACAC 60.460 60.000 18.64 9.09 0.00 3.82
3218 3326 4.293648 TGCACACGTCCCGGACAG 62.294 66.667 17.87 11.36 32.09 3.51
3247 3356 3.244976 GACATTTGCGATGTCCTTTTGG 58.755 45.455 17.65 0.00 41.77 3.28
3256 3365 1.490574 TGTCCTTTTGGGGGTTTGTG 58.509 50.000 0.00 0.00 40.87 3.33
3271 3382 1.544724 TTGTGTTGGATGCCCTTAGC 58.455 50.000 0.00 0.00 44.14 3.09
3277 3388 1.491668 TGGATGCCCTTAGCTCGTTA 58.508 50.000 0.00 0.00 44.23 3.18
3303 3414 3.747976 GGCCTGCCGCGTGAAATT 61.748 61.111 4.92 0.00 38.94 1.82
3308 3419 1.577328 CTGCCGCGTGAAATTCACCT 61.577 55.000 19.16 0.00 44.20 4.00
3351 3462 6.543465 AGCATAACTAGCTTTGCATATGTTCA 59.457 34.615 10.56 0.00 39.87 3.18
3380 3491 2.890808 TTAGATAGCTCCAAGCACCG 57.109 50.000 0.00 0.00 45.56 4.94
3383 3494 1.153289 ATAGCTCCAAGCACCGCAG 60.153 57.895 0.00 0.00 45.56 5.18
3401 3512 4.518217 CGCAGCTAAATTAAATCACCTCG 58.482 43.478 0.00 0.00 0.00 4.63
3439 3550 6.038356 CCTCAACAAATGCACTTCCAATATC 58.962 40.000 0.00 0.00 0.00 1.63
3450 3561 4.946157 CACTTCCAATATCCAGTGAAAGCT 59.054 41.667 0.00 0.00 39.25 3.74
3524 3635 6.404184 CCAAATTAAATCATCACGGTAGCACA 60.404 38.462 0.00 0.00 0.00 4.57
3572 3683 2.111043 CTTCACACGTGCAGGGGT 59.889 61.111 17.22 8.85 0.00 4.95
3577 3688 2.126071 CACGTGCAGGGGTAGACG 60.126 66.667 11.67 0.00 37.82 4.18
3578 3689 2.282674 ACGTGCAGGGGTAGACGA 60.283 61.111 11.67 0.00 35.77 4.20
3579 3690 2.181021 CGTGCAGGGGTAGACGAC 59.819 66.667 0.00 0.00 33.64 4.34
3580 3691 2.632544 CGTGCAGGGGTAGACGACA 61.633 63.158 0.00 0.00 33.64 4.35
3581 3692 1.080025 GTGCAGGGGTAGACGACAC 60.080 63.158 0.00 0.00 0.00 3.67
3582 3693 1.532078 TGCAGGGGTAGACGACACA 60.532 57.895 0.00 0.00 30.38 3.72
3583 3694 0.902984 TGCAGGGGTAGACGACACAT 60.903 55.000 0.00 0.00 30.38 3.21
3584 3695 0.460284 GCAGGGGTAGACGACACATG 60.460 60.000 0.00 0.00 46.30 3.21
3585 3696 0.460284 CAGGGGTAGACGACACATGC 60.460 60.000 0.00 0.00 36.25 4.06
3586 3697 1.153429 GGGGTAGACGACACATGCC 60.153 63.158 0.00 0.00 30.38 4.40
3587 3698 1.153429 GGGTAGACGACACATGCCC 60.153 63.158 0.00 0.00 0.00 5.36
3588 3699 1.594833 GGTAGACGACACATGCCCA 59.405 57.895 0.00 0.00 0.00 5.36
3589 3700 0.036765 GGTAGACGACACATGCCCAA 60.037 55.000 0.00 0.00 0.00 4.12
3590 3701 1.609580 GGTAGACGACACATGCCCAAA 60.610 52.381 0.00 0.00 0.00 3.28
3591 3702 2.147958 GTAGACGACACATGCCCAAAA 58.852 47.619 0.00 0.00 0.00 2.44
3592 3703 1.909700 AGACGACACATGCCCAAAAT 58.090 45.000 0.00 0.00 0.00 1.82
3593 3704 2.238521 AGACGACACATGCCCAAAATT 58.761 42.857 0.00 0.00 0.00 1.82
3594 3705 2.627699 AGACGACACATGCCCAAAATTT 59.372 40.909 0.00 0.00 0.00 1.82
3595 3706 2.986479 GACGACACATGCCCAAAATTTC 59.014 45.455 0.00 0.00 0.00 2.17
3596 3707 2.363680 ACGACACATGCCCAAAATTTCA 59.636 40.909 0.00 0.00 0.00 2.69
3597 3708 2.988493 CGACACATGCCCAAAATTTCAG 59.012 45.455 0.00 0.00 0.00 3.02
3598 3709 3.552684 CGACACATGCCCAAAATTTCAGT 60.553 43.478 0.00 0.00 0.00 3.41
3599 3710 3.731089 ACACATGCCCAAAATTTCAGTG 58.269 40.909 0.00 0.00 0.00 3.66
3600 3711 3.068560 CACATGCCCAAAATTTCAGTGG 58.931 45.455 0.00 1.01 0.00 4.00
3601 3712 2.971330 ACATGCCCAAAATTTCAGTGGA 59.029 40.909 8.67 0.00 34.05 4.02
3602 3713 3.007182 ACATGCCCAAAATTTCAGTGGAG 59.993 43.478 8.67 1.59 34.05 3.86
3603 3714 1.969923 TGCCCAAAATTTCAGTGGAGG 59.030 47.619 8.67 0.00 34.05 4.30
3604 3715 1.338105 GCCCAAAATTTCAGTGGAGGC 60.338 52.381 8.67 1.94 34.05 4.70
3605 3716 1.276138 CCCAAAATTTCAGTGGAGGCC 59.724 52.381 8.67 0.00 34.05 5.19
3606 3717 1.276138 CCAAAATTTCAGTGGAGGCCC 59.724 52.381 0.00 0.00 34.05 5.80
3607 3718 1.969923 CAAAATTTCAGTGGAGGCCCA 59.030 47.619 0.00 0.00 40.95 5.36
3608 3719 2.368221 CAAAATTTCAGTGGAGGCCCAA 59.632 45.455 0.00 0.00 45.59 4.12
3609 3720 1.928868 AATTTCAGTGGAGGCCCAAG 58.071 50.000 0.00 0.00 45.59 3.61
3610 3721 0.779997 ATTTCAGTGGAGGCCCAAGT 59.220 50.000 0.00 0.00 45.59 3.16
3611 3722 0.178992 TTTCAGTGGAGGCCCAAGTG 60.179 55.000 0.00 0.00 45.59 3.16
3612 3723 1.059584 TTCAGTGGAGGCCCAAGTGA 61.060 55.000 0.00 0.60 45.59 3.41
3613 3724 1.059584 TCAGTGGAGGCCCAAGTGAA 61.060 55.000 0.00 0.00 45.59 3.18
3614 3725 0.607489 CAGTGGAGGCCCAAGTGAAG 60.607 60.000 0.00 0.00 45.59 3.02
3615 3726 1.303643 GTGGAGGCCCAAGTGAAGG 60.304 63.158 0.00 0.00 45.59 3.46
3616 3727 1.463214 TGGAGGCCCAAGTGAAGGA 60.463 57.895 0.00 0.00 40.09 3.36
3617 3728 1.301293 GGAGGCCCAAGTGAAGGAG 59.699 63.158 0.00 0.00 0.00 3.69
3618 3729 1.301293 GAGGCCCAAGTGAAGGAGG 59.699 63.158 0.00 0.00 0.00 4.30
3619 3730 2.203549 GAGGCCCAAGTGAAGGAGGG 62.204 65.000 0.00 0.00 44.37 4.30
3621 3732 3.170362 CCCAAGTGAAGGAGGGCA 58.830 61.111 0.00 0.00 33.91 5.36
3622 3733 1.303643 CCCAAGTGAAGGAGGGCAC 60.304 63.158 0.00 0.00 33.91 5.01
3623 3734 1.455849 CCAAGTGAAGGAGGGCACA 59.544 57.895 0.00 0.00 37.48 4.57
3624 3735 0.038744 CCAAGTGAAGGAGGGCACAT 59.961 55.000 0.00 0.00 37.48 3.21
3625 3736 1.548582 CCAAGTGAAGGAGGGCACATT 60.549 52.381 0.00 0.00 37.48 2.71
3626 3737 2.242043 CAAGTGAAGGAGGGCACATTT 58.758 47.619 0.00 0.00 37.48 2.32
3627 3738 1.915141 AGTGAAGGAGGGCACATTTG 58.085 50.000 0.00 0.00 37.48 2.32
3628 3739 1.425066 AGTGAAGGAGGGCACATTTGA 59.575 47.619 0.00 0.00 37.48 2.69
3629 3740 2.042162 AGTGAAGGAGGGCACATTTGAT 59.958 45.455 0.00 0.00 37.48 2.57
3630 3741 2.827921 GTGAAGGAGGGCACATTTGATT 59.172 45.455 0.00 0.00 35.19 2.57
3631 3742 3.259123 GTGAAGGAGGGCACATTTGATTT 59.741 43.478 0.00 0.00 35.19 2.17
3632 3743 3.258872 TGAAGGAGGGCACATTTGATTTG 59.741 43.478 0.00 0.00 0.00 2.32
3633 3744 1.551883 AGGAGGGCACATTTGATTTGC 59.448 47.619 0.00 0.00 35.40 3.68
3634 3745 1.551883 GGAGGGCACATTTGATTTGCT 59.448 47.619 0.00 0.00 36.46 3.91
3635 3746 2.760092 GGAGGGCACATTTGATTTGCTA 59.240 45.455 0.00 0.00 36.46 3.49
3636 3747 3.385755 GGAGGGCACATTTGATTTGCTAT 59.614 43.478 0.00 0.00 36.46 2.97
3637 3748 4.500375 GGAGGGCACATTTGATTTGCTATC 60.500 45.833 0.00 0.00 36.46 2.08
3638 3749 4.284178 AGGGCACATTTGATTTGCTATCT 58.716 39.130 0.00 0.00 36.46 1.98
3639 3750 4.098960 AGGGCACATTTGATTTGCTATCTG 59.901 41.667 0.00 0.00 36.46 2.90
3640 3751 4.098349 GGGCACATTTGATTTGCTATCTGA 59.902 41.667 0.00 0.00 36.46 3.27
3641 3752 5.279384 GGCACATTTGATTTGCTATCTGAG 58.721 41.667 0.00 0.00 36.46 3.35
3642 3753 5.279384 GCACATTTGATTTGCTATCTGAGG 58.721 41.667 0.00 0.00 33.26 3.86
3643 3754 5.163581 GCACATTTGATTTGCTATCTGAGGT 60.164 40.000 0.00 0.00 33.26 3.85
3644 3755 6.493116 CACATTTGATTTGCTATCTGAGGTC 58.507 40.000 0.00 0.00 0.00 3.85
3645 3756 5.591877 ACATTTGATTTGCTATCTGAGGTCC 59.408 40.000 0.00 0.00 0.00 4.46
3646 3757 3.845781 TGATTTGCTATCTGAGGTCCC 57.154 47.619 0.00 0.00 0.00 4.46
3647 3758 3.114606 TGATTTGCTATCTGAGGTCCCA 58.885 45.455 0.00 0.00 0.00 4.37
3648 3759 3.523157 TGATTTGCTATCTGAGGTCCCAA 59.477 43.478 0.00 0.00 0.00 4.12
3649 3760 3.350219 TTTGCTATCTGAGGTCCCAAC 57.650 47.619 0.00 0.00 0.00 3.77
3650 3761 2.254152 TGCTATCTGAGGTCCCAACT 57.746 50.000 0.00 0.00 0.00 3.16
3651 3762 3.398318 TGCTATCTGAGGTCCCAACTA 57.602 47.619 0.00 0.00 0.00 2.24
3652 3763 3.300388 TGCTATCTGAGGTCCCAACTAG 58.700 50.000 0.00 0.00 0.00 2.57
3653 3764 3.301274 GCTATCTGAGGTCCCAACTAGT 58.699 50.000 0.00 0.00 0.00 2.57
3654 3765 4.079385 TGCTATCTGAGGTCCCAACTAGTA 60.079 45.833 0.00 0.00 0.00 1.82
3655 3766 4.894114 GCTATCTGAGGTCCCAACTAGTAA 59.106 45.833 0.00 0.00 0.00 2.24
3656 3767 5.363005 GCTATCTGAGGTCCCAACTAGTAAA 59.637 44.000 0.00 0.00 0.00 2.01
3657 3768 6.127140 GCTATCTGAGGTCCCAACTAGTAAAA 60.127 42.308 0.00 0.00 0.00 1.52
3658 3769 6.697641 ATCTGAGGTCCCAACTAGTAAAAA 57.302 37.500 0.00 0.00 0.00 1.94
3659 3770 6.110411 TCTGAGGTCCCAACTAGTAAAAAG 57.890 41.667 0.00 0.00 0.00 2.27
3660 3771 5.605488 TCTGAGGTCCCAACTAGTAAAAAGT 59.395 40.000 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.414269 TGGAGGCATATGCATACACATG 58.586 45.455 22.91 5.66 41.19 3.21
8 9 3.793819 TGGAGGCATATGCATACACAT 57.206 42.857 22.91 1.25 41.19 3.21
16 17 0.824595 TGGTGCATGGAGGCATATGC 60.825 55.000 19.79 19.79 46.92 3.14
17 18 1.244816 CTGGTGCATGGAGGCATATG 58.755 55.000 0.00 0.00 46.92 1.78
18 19 0.538977 GCTGGTGCATGGAGGCATAT 60.539 55.000 0.00 0.00 46.92 1.78
19 20 1.152902 GCTGGTGCATGGAGGCATA 60.153 57.895 0.00 0.00 46.92 3.14
20 21 2.441532 GCTGGTGCATGGAGGCAT 60.442 61.111 0.00 0.00 46.92 4.40
21 22 4.746309 GGCTGGTGCATGGAGGCA 62.746 66.667 10.18 0.00 42.53 4.75
23 24 3.736224 AGGGCTGGTGCATGGAGG 61.736 66.667 0.00 0.00 41.91 4.30
24 25 2.439701 CAGGGCTGGTGCATGGAG 60.440 66.667 0.00 0.00 41.91 3.86
25 26 3.259314 ACAGGGCTGGTGCATGGA 61.259 61.111 0.00 0.00 41.91 3.41
26 27 3.066190 CACAGGGCTGGTGCATGG 61.066 66.667 0.00 0.00 41.91 3.66
27 28 2.282674 ACACAGGGCTGGTGCATG 60.283 61.111 8.60 0.00 39.87 4.06
28 29 2.282674 CACACAGGGCTGGTGCAT 60.283 61.111 8.60 0.00 39.87 3.96
31 32 2.203394 AAGCACACAGGGCTGGTG 60.203 61.111 0.00 7.38 41.66 4.17
32 33 2.113986 GAAGCACACAGGGCTGGT 59.886 61.111 0.00 0.00 41.66 4.00
33 34 2.674380 GGAAGCACACAGGGCTGG 60.674 66.667 0.00 0.00 41.66 4.85
34 35 2.674380 GGGAAGCACACAGGGCTG 60.674 66.667 0.00 0.00 41.66 4.85
35 36 3.971702 GGGGAAGCACACAGGGCT 61.972 66.667 0.00 0.00 45.15 5.19
36 37 3.971702 AGGGGAAGCACACAGGGC 61.972 66.667 0.00 0.00 0.00 5.19
37 38 1.856539 ATCAGGGGAAGCACACAGGG 61.857 60.000 0.00 0.00 0.00 4.45
38 39 0.393537 GATCAGGGGAAGCACACAGG 60.394 60.000 0.00 0.00 0.00 4.00
39 40 0.325933 TGATCAGGGGAAGCACACAG 59.674 55.000 0.00 0.00 0.00 3.66
40 41 0.994247 ATGATCAGGGGAAGCACACA 59.006 50.000 0.09 0.00 0.00 3.72
41 42 2.171448 AGTATGATCAGGGGAAGCACAC 59.829 50.000 0.09 0.00 0.00 3.82
42 43 2.435805 GAGTATGATCAGGGGAAGCACA 59.564 50.000 0.09 0.00 0.00 4.57
43 44 2.224402 GGAGTATGATCAGGGGAAGCAC 60.224 54.545 0.09 0.00 0.00 4.40
44 45 2.050144 GGAGTATGATCAGGGGAAGCA 58.950 52.381 0.09 0.00 0.00 3.91
45 46 2.050144 TGGAGTATGATCAGGGGAAGC 58.950 52.381 0.09 0.00 0.00 3.86
46 47 3.495806 GCTTGGAGTATGATCAGGGGAAG 60.496 52.174 0.09 0.10 0.00 3.46
47 48 2.439507 GCTTGGAGTATGATCAGGGGAA 59.560 50.000 0.09 0.00 0.00 3.97
48 49 2.050144 GCTTGGAGTATGATCAGGGGA 58.950 52.381 0.09 0.00 0.00 4.81
49 50 1.072965 GGCTTGGAGTATGATCAGGGG 59.927 57.143 0.09 0.00 0.00 4.79
50 51 1.770658 TGGCTTGGAGTATGATCAGGG 59.229 52.381 0.09 0.00 0.00 4.45
51 52 3.784511 ATGGCTTGGAGTATGATCAGG 57.215 47.619 0.09 0.00 0.00 3.86
52 53 5.479724 TCTCTATGGCTTGGAGTATGATCAG 59.520 44.000 12.41 0.00 0.00 2.90
53 54 5.397360 TCTCTATGGCTTGGAGTATGATCA 58.603 41.667 12.41 0.00 0.00 2.92
54 55 5.991933 TCTCTATGGCTTGGAGTATGATC 57.008 43.478 12.41 0.00 0.00 2.92
55 56 6.021672 TGATCTCTATGGCTTGGAGTATGAT 58.978 40.000 12.41 0.93 0.00 2.45
56 57 5.397360 TGATCTCTATGGCTTGGAGTATGA 58.603 41.667 12.41 0.00 0.00 2.15
57 58 5.735285 TGATCTCTATGGCTTGGAGTATG 57.265 43.478 12.41 0.00 0.00 2.39
58 59 5.424895 GGATGATCTCTATGGCTTGGAGTAT 59.575 44.000 12.41 6.17 0.00 2.12
59 60 4.774726 GGATGATCTCTATGGCTTGGAGTA 59.225 45.833 12.41 2.18 0.00 2.59
60 61 3.582208 GGATGATCTCTATGGCTTGGAGT 59.418 47.826 12.41 2.17 0.00 3.85
61 62 3.581770 TGGATGATCTCTATGGCTTGGAG 59.418 47.826 7.35 7.35 0.00 3.86
62 63 3.581770 CTGGATGATCTCTATGGCTTGGA 59.418 47.826 0.00 0.00 0.00 3.53
63 64 3.581770 TCTGGATGATCTCTATGGCTTGG 59.418 47.826 0.00 0.00 0.00 3.61
64 65 4.886496 TCTGGATGATCTCTATGGCTTG 57.114 45.455 0.00 0.00 0.00 4.01
65 66 5.680594 GATCTGGATGATCTCTATGGCTT 57.319 43.478 0.00 0.00 46.05 4.35
81 82 0.755079 TGATTCAGGCTCCGATCTGG 59.245 55.000 0.00 0.00 40.09 3.86
82 83 1.539929 GGTGATTCAGGCTCCGATCTG 60.540 57.143 0.00 0.00 0.00 2.90
83 84 0.755686 GGTGATTCAGGCTCCGATCT 59.244 55.000 0.00 0.00 0.00 2.75
84 85 0.465705 TGGTGATTCAGGCTCCGATC 59.534 55.000 0.00 0.00 0.00 3.69
85 86 0.467384 CTGGTGATTCAGGCTCCGAT 59.533 55.000 0.00 0.00 0.00 4.18
86 87 0.904865 ACTGGTGATTCAGGCTCCGA 60.905 55.000 0.00 0.00 38.98 4.55
87 88 0.036010 AACTGGTGATTCAGGCTCCG 60.036 55.000 0.00 0.00 38.98 4.63
88 89 2.911484 CTAACTGGTGATTCAGGCTCC 58.089 52.381 0.00 0.00 38.98 4.70
89 90 2.093235 AGCTAACTGGTGATTCAGGCTC 60.093 50.000 0.00 0.00 38.98 4.70
90 91 1.912043 AGCTAACTGGTGATTCAGGCT 59.088 47.619 0.00 0.00 38.98 4.58
91 92 2.012673 CAGCTAACTGGTGATTCAGGC 58.987 52.381 0.00 0.00 46.27 4.85
92 93 2.012673 GCAGCTAACTGGTGATTCAGG 58.987 52.381 0.00 0.00 46.27 3.86
93 94 2.012673 GGCAGCTAACTGGTGATTCAG 58.987 52.381 0.00 0.00 46.27 3.02
94 95 1.350684 TGGCAGCTAACTGGTGATTCA 59.649 47.619 0.00 0.00 46.27 2.57
95 96 2.012673 CTGGCAGCTAACTGGTGATTC 58.987 52.381 0.00 0.00 46.27 2.52
96 97 1.630369 TCTGGCAGCTAACTGGTGATT 59.370 47.619 10.34 0.00 46.27 2.57
97 98 1.279496 TCTGGCAGCTAACTGGTGAT 58.721 50.000 10.34 0.00 46.27 3.06
98 99 1.208052 GATCTGGCAGCTAACTGGTGA 59.792 52.381 10.34 0.00 46.27 4.02
99 100 1.209019 AGATCTGGCAGCTAACTGGTG 59.791 52.381 10.34 0.00 44.63 4.17
100 101 1.209019 CAGATCTGGCAGCTAACTGGT 59.791 52.381 15.38 0.00 44.63 4.00
101 102 1.483827 TCAGATCTGGCAGCTAACTGG 59.516 52.381 22.42 0.00 44.63 4.00
102 103 7.351780 ATCTTTTCAGATCTGGCAGCTAACTG 61.352 42.308 22.42 14.91 40.27 3.16
103 104 3.988976 TTTCAGATCTGGCAGCTAACT 57.011 42.857 22.42 3.32 0.00 2.24
104 105 4.256920 TCTTTTCAGATCTGGCAGCTAAC 58.743 43.478 22.42 0.90 0.00 2.34
105 106 4.558226 TCTTTTCAGATCTGGCAGCTAA 57.442 40.909 22.42 5.55 0.00 3.09
106 107 4.767578 ATCTTTTCAGATCTGGCAGCTA 57.232 40.909 22.42 5.12 34.26 3.32
107 108 3.648507 ATCTTTTCAGATCTGGCAGCT 57.351 42.857 22.42 0.00 34.26 4.24
116 117 6.472887 TGTTAGTTTCCCGATCTTTTCAGAT 58.527 36.000 0.00 0.00 43.03 2.90
117 118 5.860611 TGTTAGTTTCCCGATCTTTTCAGA 58.139 37.500 0.00 0.00 0.00 3.27
118 119 6.017440 TGTTGTTAGTTTCCCGATCTTTTCAG 60.017 38.462 0.00 0.00 0.00 3.02
119 120 5.823570 TGTTGTTAGTTTCCCGATCTTTTCA 59.176 36.000 0.00 0.00 0.00 2.69
120 121 6.308371 TGTTGTTAGTTTCCCGATCTTTTC 57.692 37.500 0.00 0.00 0.00 2.29
121 122 6.294508 CCATGTTGTTAGTTTCCCGATCTTTT 60.295 38.462 0.00 0.00 0.00 2.27
122 123 5.183140 CCATGTTGTTAGTTTCCCGATCTTT 59.817 40.000 0.00 0.00 0.00 2.52
123 124 4.700213 CCATGTTGTTAGTTTCCCGATCTT 59.300 41.667 0.00 0.00 0.00 2.40
124 125 4.261801 CCATGTTGTTAGTTTCCCGATCT 58.738 43.478 0.00 0.00 0.00 2.75
125 126 3.377172 CCCATGTTGTTAGTTTCCCGATC 59.623 47.826 0.00 0.00 0.00 3.69
126 127 3.009695 TCCCATGTTGTTAGTTTCCCGAT 59.990 43.478 0.00 0.00 0.00 4.18
127 128 2.372504 TCCCATGTTGTTAGTTTCCCGA 59.627 45.455 0.00 0.00 0.00 5.14
128 129 2.486592 GTCCCATGTTGTTAGTTTCCCG 59.513 50.000 0.00 0.00 0.00 5.14
129 130 2.486592 CGTCCCATGTTGTTAGTTTCCC 59.513 50.000 0.00 0.00 0.00 3.97
130 131 3.187842 GTCGTCCCATGTTGTTAGTTTCC 59.812 47.826 0.00 0.00 0.00 3.13
131 132 3.120786 CGTCGTCCCATGTTGTTAGTTTC 60.121 47.826 0.00 0.00 0.00 2.78
132 133 2.803956 CGTCGTCCCATGTTGTTAGTTT 59.196 45.455 0.00 0.00 0.00 2.66
133 134 2.036217 TCGTCGTCCCATGTTGTTAGTT 59.964 45.455 0.00 0.00 0.00 2.24
134 135 1.614903 TCGTCGTCCCATGTTGTTAGT 59.385 47.619 0.00 0.00 0.00 2.24
135 136 1.990563 GTCGTCGTCCCATGTTGTTAG 59.009 52.381 0.00 0.00 0.00 2.34
136 137 1.666599 CGTCGTCGTCCCATGTTGTTA 60.667 52.381 0.00 0.00 0.00 2.41
137 138 0.942410 CGTCGTCGTCCCATGTTGTT 60.942 55.000 0.00 0.00 0.00 2.83
138 139 1.372499 CGTCGTCGTCCCATGTTGT 60.372 57.895 0.00 0.00 0.00 3.32
139 140 2.092291 CCGTCGTCGTCCCATGTTG 61.092 63.158 0.71 0.00 35.01 3.33
140 141 2.260434 CCGTCGTCGTCCCATGTT 59.740 61.111 0.71 0.00 35.01 2.71
141 142 4.430765 GCCGTCGTCGTCCCATGT 62.431 66.667 0.71 0.00 35.01 3.21
146 147 3.753070 GATCTGGCCGTCGTCGTCC 62.753 68.421 0.00 0.00 35.51 4.79
147 148 2.278013 GATCTGGCCGTCGTCGTC 60.278 66.667 0.00 0.00 35.01 4.20
148 149 4.175489 CGATCTGGCCGTCGTCGT 62.175 66.667 14.63 0.00 33.42 4.34
149 150 4.907034 CCGATCTGGCCGTCGTCG 62.907 72.222 19.38 15.48 36.17 5.12
150 151 4.570663 CCCGATCTGGCCGTCGTC 62.571 72.222 19.38 5.87 36.17 4.20
152 153 4.271816 CTCCCGATCTGGCCGTCG 62.272 72.222 15.59 15.59 37.58 5.12
153 154 2.833582 TCTCCCGATCTGGCCGTC 60.834 66.667 0.00 0.00 35.87 4.79
154 155 3.148279 GTCTCCCGATCTGGCCGT 61.148 66.667 0.00 0.00 35.87 5.68
155 156 3.147595 TGTCTCCCGATCTGGCCG 61.148 66.667 0.00 0.00 35.87 6.13
156 157 2.501610 GTGTCTCCCGATCTGGCC 59.498 66.667 0.00 0.00 35.87 5.36
157 158 1.690219 ATGGTGTCTCCCGATCTGGC 61.690 60.000 0.00 0.00 35.87 4.85
158 159 0.105593 CATGGTGTCTCCCGATCTGG 59.894 60.000 0.00 0.00 34.77 3.86
159 160 0.531532 GCATGGTGTCTCCCGATCTG 60.532 60.000 0.00 0.00 34.77 2.90
160 161 1.690219 GGCATGGTGTCTCCCGATCT 61.690 60.000 0.00 0.00 34.77 2.75
161 162 1.227674 GGCATGGTGTCTCCCGATC 60.228 63.158 0.00 0.00 34.77 3.69
162 163 1.348008 ATGGCATGGTGTCTCCCGAT 61.348 55.000 0.00 0.00 34.77 4.18
163 164 1.995066 ATGGCATGGTGTCTCCCGA 60.995 57.895 0.00 0.00 34.77 5.14
164 165 1.820906 CATGGCATGGTGTCTCCCG 60.821 63.158 19.80 0.00 34.77 5.14
165 166 1.454479 CCATGGCATGGTGTCTCCC 60.454 63.158 33.65 0.00 45.54 4.30
166 167 4.247781 CCATGGCATGGTGTCTCC 57.752 61.111 33.65 0.00 45.54 3.71
174 175 2.927028 TCTTGATCTGTCCATGGCATG 58.073 47.619 20.56 20.56 0.00 4.06
175 176 3.552875 CTTCTTGATCTGTCCATGGCAT 58.447 45.455 6.96 0.00 0.00 4.40
176 177 2.942752 GCTTCTTGATCTGTCCATGGCA 60.943 50.000 6.96 7.80 0.00 4.92
177 178 1.674962 GCTTCTTGATCTGTCCATGGC 59.325 52.381 6.96 2.72 0.00 4.40
178 179 1.938577 CGCTTCTTGATCTGTCCATGG 59.061 52.381 4.97 4.97 0.00 3.66
179 180 2.864946 CTCGCTTCTTGATCTGTCCATG 59.135 50.000 0.00 0.00 0.00 3.66
180 181 2.741228 GCTCGCTTCTTGATCTGTCCAT 60.741 50.000 0.00 0.00 0.00 3.41
181 182 1.404717 GCTCGCTTCTTGATCTGTCCA 60.405 52.381 0.00 0.00 0.00 4.02
182 183 1.285578 GCTCGCTTCTTGATCTGTCC 58.714 55.000 0.00 0.00 0.00 4.02
183 184 0.919981 CGCTCGCTTCTTGATCTGTC 59.080 55.000 0.00 0.00 0.00 3.51
184 185 0.459237 CCGCTCGCTTCTTGATCTGT 60.459 55.000 0.00 0.00 0.00 3.41
185 186 1.760268 GCCGCTCGCTTCTTGATCTG 61.760 60.000 0.00 0.00 0.00 2.90
186 187 1.520342 GCCGCTCGCTTCTTGATCT 60.520 57.895 0.00 0.00 0.00 2.75
187 188 1.156645 ATGCCGCTCGCTTCTTGATC 61.157 55.000 0.00 0.00 38.78 2.92
188 189 1.153289 ATGCCGCTCGCTTCTTGAT 60.153 52.632 0.00 0.00 38.78 2.57
189 190 2.102438 CATGCCGCTCGCTTCTTGA 61.102 57.895 0.00 0.00 38.78 3.02
190 191 2.402388 CATGCCGCTCGCTTCTTG 59.598 61.111 0.00 0.00 38.78 3.02
191 192 2.821366 CCATGCCGCTCGCTTCTT 60.821 61.111 0.00 0.00 38.78 2.52
192 193 4.845580 CCCATGCCGCTCGCTTCT 62.846 66.667 0.00 0.00 38.78 2.85
193 194 4.838152 TCCCATGCCGCTCGCTTC 62.838 66.667 0.00 0.00 38.78 3.86
197 198 3.499737 GTTGTCCCATGCCGCTCG 61.500 66.667 0.00 0.00 0.00 5.03
198 199 3.499737 CGTTGTCCCATGCCGCTC 61.500 66.667 0.00 0.00 0.00 5.03
199 200 4.015406 TCGTTGTCCCATGCCGCT 62.015 61.111 0.00 0.00 0.00 5.52
200 201 3.799755 GTCGTTGTCCCATGCCGC 61.800 66.667 0.00 0.00 0.00 6.53
201 202 2.358125 TGTCGTTGTCCCATGCCG 60.358 61.111 0.00 0.00 0.00 5.69
202 203 2.690778 GCTGTCGTTGTCCCATGCC 61.691 63.158 0.00 0.00 0.00 4.40
203 204 2.690778 GGCTGTCGTTGTCCCATGC 61.691 63.158 0.00 0.00 0.00 4.06
204 205 1.300971 CTGGCTGTCGTTGTCCCATG 61.301 60.000 0.00 0.00 0.00 3.66
205 206 1.003355 CTGGCTGTCGTTGTCCCAT 60.003 57.895 0.00 0.00 0.00 4.00
206 207 1.480212 ATCTGGCTGTCGTTGTCCCA 61.480 55.000 0.00 0.00 0.00 4.37
207 208 0.741221 GATCTGGCTGTCGTTGTCCC 60.741 60.000 0.00 0.00 0.00 4.46
208 209 1.078759 CGATCTGGCTGTCGTTGTCC 61.079 60.000 0.00 0.00 33.42 4.02
209 210 1.078759 CCGATCTGGCTGTCGTTGTC 61.079 60.000 12.46 0.00 36.17 3.18
210 211 1.079819 CCGATCTGGCTGTCGTTGT 60.080 57.895 12.46 0.00 36.17 3.32
211 212 0.389817 TTCCGATCTGGCTGTCGTTG 60.390 55.000 12.46 2.89 37.80 4.10
212 213 0.108615 CTTCCGATCTGGCTGTCGTT 60.109 55.000 12.46 0.00 37.80 3.85
213 214 1.513158 CTTCCGATCTGGCTGTCGT 59.487 57.895 12.46 0.00 37.80 4.34
214 215 1.227089 CCTTCCGATCTGGCTGTCG 60.227 63.158 8.55 8.55 37.80 4.35
215 216 1.522580 GCCTTCCGATCTGGCTGTC 60.523 63.158 8.13 0.00 43.05 3.51
216 217 1.841302 TTGCCTTCCGATCTGGCTGT 61.841 55.000 14.02 0.00 46.23 4.40
217 218 0.465097 ATTGCCTTCCGATCTGGCTG 60.465 55.000 14.02 0.00 46.23 4.85
218 219 0.179034 GATTGCCTTCCGATCTGGCT 60.179 55.000 14.02 0.00 46.23 4.75
219 220 0.464373 TGATTGCCTTCCGATCTGGC 60.464 55.000 8.36 8.36 46.26 4.85
220 221 1.303309 GTGATTGCCTTCCGATCTGG 58.697 55.000 0.00 0.00 35.66 3.86
221 222 1.134280 AGGTGATTGCCTTCCGATCTG 60.134 52.381 0.00 0.00 34.71 2.90
222 223 1.134280 CAGGTGATTGCCTTCCGATCT 60.134 52.381 0.00 0.00 36.58 2.75
223 224 1.303309 CAGGTGATTGCCTTCCGATC 58.697 55.000 0.00 0.00 36.58 3.69
224 225 0.107017 CCAGGTGATTGCCTTCCGAT 60.107 55.000 0.00 0.00 36.58 4.18
225 226 1.299648 CCAGGTGATTGCCTTCCGA 59.700 57.895 0.00 0.00 36.58 4.55
226 227 1.750399 CCCAGGTGATTGCCTTCCG 60.750 63.158 0.00 0.00 36.58 4.30
227 228 1.380380 CCCCAGGTGATTGCCTTCC 60.380 63.158 0.00 0.00 36.58 3.46
228 229 0.039618 TTCCCCAGGTGATTGCCTTC 59.960 55.000 0.00 0.00 36.58 3.46
229 230 0.486879 TTTCCCCAGGTGATTGCCTT 59.513 50.000 0.00 0.00 36.58 4.35
230 231 0.040204 CTTTCCCCAGGTGATTGCCT 59.960 55.000 0.00 0.00 39.99 4.75
231 232 0.039618 TCTTTCCCCAGGTGATTGCC 59.960 55.000 0.00 0.00 0.00 4.52
232 233 1.923356 TTCTTTCCCCAGGTGATTGC 58.077 50.000 0.00 0.00 0.00 3.56
233 234 5.116084 TCTATTCTTTCCCCAGGTGATTG 57.884 43.478 0.00 0.00 0.00 2.67
234 235 5.796502 TTCTATTCTTTCCCCAGGTGATT 57.203 39.130 0.00 0.00 0.00 2.57
235 236 5.796502 TTTCTATTCTTTCCCCAGGTGAT 57.203 39.130 0.00 0.00 0.00 3.06
236 237 5.592587 TTTTCTATTCTTTCCCCAGGTGA 57.407 39.130 0.00 0.00 0.00 4.02
257 258 1.830847 GGTGTCCCAGCCCGTTTTT 60.831 57.895 0.00 0.00 0.00 1.94
258 259 2.203437 GGTGTCCCAGCCCGTTTT 60.203 61.111 0.00 0.00 0.00 2.43
259 260 4.280019 GGGTGTCCCAGCCCGTTT 62.280 66.667 0.98 0.00 45.22 3.60
313 314 4.111016 GTTTACCTTGCCGCCGCC 62.111 66.667 0.00 0.00 0.00 6.13
314 315 4.454717 CGTTTACCTTGCCGCCGC 62.455 66.667 0.00 0.00 0.00 6.53
315 316 3.795342 CCGTTTACCTTGCCGCCG 61.795 66.667 0.00 0.00 0.00 6.46
316 317 3.436924 CCCGTTTACCTTGCCGCC 61.437 66.667 0.00 0.00 0.00 6.13
317 318 3.436924 CCCCGTTTACCTTGCCGC 61.437 66.667 0.00 0.00 0.00 6.53
318 319 3.436924 GCCCCGTTTACCTTGCCG 61.437 66.667 0.00 0.00 0.00 5.69
319 320 2.035155 AGCCCCGTTTACCTTGCC 59.965 61.111 0.00 0.00 0.00 4.52
320 321 2.989881 GCAGCCCCGTTTACCTTGC 61.990 63.158 0.00 0.00 0.00 4.01
321 322 2.686816 CGCAGCCCCGTTTACCTTG 61.687 63.158 0.00 0.00 0.00 3.61
322 323 2.359478 CGCAGCCCCGTTTACCTT 60.359 61.111 0.00 0.00 0.00 3.50
323 324 3.633116 ACGCAGCCCCGTTTACCT 61.633 61.111 0.00 0.00 38.47 3.08
324 325 3.428282 CACGCAGCCCCGTTTACC 61.428 66.667 0.00 0.00 39.83 2.85
325 326 3.428282 CCACGCAGCCCCGTTTAC 61.428 66.667 0.00 0.00 39.83 2.01
326 327 3.179888 TTCCACGCAGCCCCGTTTA 62.180 57.895 0.00 0.00 39.83 2.01
327 328 4.572571 TTCCACGCAGCCCCGTTT 62.573 61.111 0.00 0.00 39.83 3.60
335 336 4.785453 GGAGGCCCTTCCACGCAG 62.785 72.222 6.15 0.00 37.20 5.18
338 339 3.665675 CTTCGGAGGCCCTTCCACG 62.666 68.421 11.40 2.34 37.05 4.94
339 340 2.269241 CTTCGGAGGCCCTTCCAC 59.731 66.667 11.40 0.00 37.05 4.02
340 341 3.009115 CCTTCGGAGGCCCTTCCA 61.009 66.667 11.40 0.00 37.05 3.53
371 372 3.596066 TTCCAGCGACTCTGCAGGC 62.596 63.158 15.13 9.35 40.99 4.85
372 373 1.447489 CTTCCAGCGACTCTGCAGG 60.447 63.158 15.13 7.28 42.44 4.85
373 374 2.099431 GCTTCCAGCGACTCTGCAG 61.099 63.158 7.63 7.63 41.50 4.41
374 375 2.047844 GCTTCCAGCGACTCTGCA 60.048 61.111 0.00 0.00 41.50 4.41
384 385 4.148825 CTCCCGGGTCGCTTCCAG 62.149 72.222 22.86 3.33 0.00 3.86
388 389 4.772231 TAGCCTCCCGGGTCGCTT 62.772 66.667 32.35 20.35 42.14 4.68
395 396 4.908487 TACCCGCTAGCCTCCCGG 62.908 72.222 9.66 3.70 41.60 5.73
396 397 3.603671 GTACCCGCTAGCCTCCCG 61.604 72.222 9.66 0.00 0.00 5.14
397 398 3.603671 CGTACCCGCTAGCCTCCC 61.604 72.222 9.66 0.00 0.00 4.30
398 399 1.669999 TTTCGTACCCGCTAGCCTCC 61.670 60.000 9.66 0.00 0.00 4.30
399 400 0.174162 TTTTCGTACCCGCTAGCCTC 59.826 55.000 9.66 0.00 0.00 4.70
400 401 0.175073 CTTTTCGTACCCGCTAGCCT 59.825 55.000 9.66 0.00 0.00 4.58
401 402 0.174162 TCTTTTCGTACCCGCTAGCC 59.826 55.000 9.66 0.00 0.00 3.93
402 403 2.000429 TTCTTTTCGTACCCGCTAGC 58.000 50.000 4.06 4.06 0.00 3.42
403 404 4.726876 GCAATTTCTTTTCGTACCCGCTAG 60.727 45.833 0.00 0.00 0.00 3.42
404 405 3.125658 GCAATTTCTTTTCGTACCCGCTA 59.874 43.478 0.00 0.00 0.00 4.26
405 406 2.095415 GCAATTTCTTTTCGTACCCGCT 60.095 45.455 0.00 0.00 0.00 5.52
406 407 2.247637 GCAATTTCTTTTCGTACCCGC 58.752 47.619 0.00 0.00 0.00 6.13
407 408 3.488489 CTGCAATTTCTTTTCGTACCCG 58.512 45.455 0.00 0.00 0.00 5.28
408 409 3.057526 AGCTGCAATTTCTTTTCGTACCC 60.058 43.478 1.02 0.00 0.00 3.69
430 431 2.355445 TTCAATTTGGCCGTGCGCAA 62.355 50.000 14.00 0.00 40.31 4.85
484 485 3.532896 CAGGTGTACGCCATCTGTT 57.467 52.632 26.75 2.32 45.62 3.16
505 506 2.736826 GGGAGAAAGGGAGAGGGCG 61.737 68.421 0.00 0.00 0.00 6.13
506 507 1.616628 TGGGAGAAAGGGAGAGGGC 60.617 63.158 0.00 0.00 0.00 5.19
507 508 1.275421 GGTGGGAGAAAGGGAGAGGG 61.275 65.000 0.00 0.00 0.00 4.30
543 552 4.341806 TGTTTTTCCAGATGCATGTGTTCT 59.658 37.500 21.17 1.80 0.00 3.01
544 553 4.619973 TGTTTTTCCAGATGCATGTGTTC 58.380 39.130 21.17 0.00 0.00 3.18
570 579 5.710513 CATCACCATGGAAAGTTCTTTCA 57.289 39.130 21.47 11.55 32.77 2.69
617 626 5.169992 TCACACCATCAGATCATTTCACT 57.830 39.130 0.00 0.00 0.00 3.41
751 760 1.815003 CATTCCATGCACGCGAGGA 60.815 57.895 15.93 6.68 0.00 3.71
815 832 1.645034 CATCACAAGGACACTAGCCG 58.355 55.000 0.00 0.00 0.00 5.52
1176 1198 0.238553 GCTTCTTCTTGTGGCCGAAC 59.761 55.000 0.00 0.00 0.00 3.95
1626 1648 2.569059 CATGACCATCCATCACCTCAC 58.431 52.381 0.00 0.00 0.00 3.51
1754 1785 0.892814 GCAGCCTTTCCAGCTTCAGT 60.893 55.000 0.00 0.00 38.95 3.41
1942 1973 4.081087 AGTGAGAGGTAAACAAGTGTGTGT 60.081 41.667 0.00 0.00 38.27 3.72
1948 1979 2.638363 GGGGAGTGAGAGGTAAACAAGT 59.362 50.000 0.00 0.00 0.00 3.16
1958 1989 1.063341 TCAGATGGAGGGGAGTGAGAG 60.063 57.143 0.00 0.00 0.00 3.20
1991 2022 0.311790 CGACCTGCATGCAAAGTGTT 59.688 50.000 23.64 1.08 0.00 3.32
1996 2036 0.522626 CATGTCGACCTGCATGCAAA 59.477 50.000 22.88 0.00 36.49 3.68
2026 2066 0.807667 GCAGGCGAACATGATCTCGT 60.808 55.000 0.00 0.00 37.39 4.18
2125 2165 0.826256 GCAGGAACCGGGGAAACTTT 60.826 55.000 6.32 0.00 0.00 2.66
2167 2238 2.430921 GCAGTCACACCGGAGTCG 60.431 66.667 9.46 1.36 0.00 4.18
2246 2317 1.226974 CACCTCCTGCCGTATCGTG 60.227 63.158 0.00 0.00 0.00 4.35
2298 2369 1.446792 CCTGCAAGCGAGTGACGAT 60.447 57.895 0.00 0.00 45.77 3.73
2347 2418 2.555123 CGGTGAAACATCACTGGGG 58.445 57.895 9.43 0.00 41.84 4.96
2473 2544 1.245224 GTGCAACTAGTCGACGTACG 58.755 55.000 15.01 15.01 44.09 3.67
2648 2720 5.948162 ACTGATCAAAACTCAATAGCACCAT 59.052 36.000 0.00 0.00 0.00 3.55
2711 2783 3.217242 GTCACGATGACACAAGCCT 57.783 52.632 11.62 0.00 46.22 4.58
2805 2877 4.141869 GGCCCCGAGTAACTCAAATTACTA 60.142 45.833 0.00 0.00 43.83 1.82
2884 2958 8.554528 CAGTATCTGAATGTAAGTTTATGCCTG 58.445 37.037 0.00 0.00 32.44 4.85
2936 3043 1.277557 AGGCCATGACAGAGTCTTGTC 59.722 52.381 5.01 12.93 46.02 3.18
2974 3081 4.049186 CGGACGTTTGAGGGATAGTATTG 58.951 47.826 0.00 0.00 0.00 1.90
2978 3085 0.175073 GCGGACGTTTGAGGGATAGT 59.825 55.000 0.00 0.00 0.00 2.12
3004 3111 2.088423 CCGGAATTTGGATGTTCGGAA 58.912 47.619 0.00 0.00 0.00 4.30
3009 3116 2.612721 GCTTTGCCGGAATTTGGATGTT 60.613 45.455 5.05 0.00 0.00 2.71
3012 3119 0.536724 GGCTTTGCCGGAATTTGGAT 59.463 50.000 5.05 0.00 39.62 3.41
3083 3190 2.086869 GTGTTCTGATGTCCCACATGG 58.913 52.381 0.00 0.00 39.27 3.66
3086 3193 0.400213 GGGTGTTCTGATGTCCCACA 59.600 55.000 0.00 0.00 38.15 4.17
3097 3204 2.606826 GAGGGACGGGGGTGTTCT 60.607 66.667 0.00 0.00 0.00 3.01
3099 3206 4.265507 AGGAGGGACGGGGGTGTT 62.266 66.667 0.00 0.00 0.00 3.32
3122 3230 0.172352 TCTACGCATGTGCATGTCGA 59.828 50.000 24.15 10.94 42.21 4.20
3126 3234 1.585297 TCCATCTACGCATGTGCATG 58.415 50.000 6.08 7.74 42.21 4.06
3130 3238 3.002656 GGTTTCATCCATCTACGCATGTG 59.997 47.826 4.30 4.30 0.00 3.21
3136 3244 2.882927 TCCGGTTTCATCCATCTACG 57.117 50.000 0.00 0.00 0.00 3.51
3152 3260 6.356556 TCCAATGCTATCCCATATTTATCCG 58.643 40.000 0.00 0.00 0.00 4.18
3180 3288 0.764752 GGACAGGATAGGGGGTGGAG 60.765 65.000 0.00 0.00 0.00 3.86
3185 3293 2.808206 GCACGGACAGGATAGGGGG 61.808 68.421 0.00 0.00 0.00 5.40
3225 3333 3.057315 CCAAAAGGACATCGCAAATGTCT 60.057 43.478 21.86 10.41 45.60 3.41
3236 3345 2.046292 CACAAACCCCCAAAAGGACAT 58.954 47.619 0.00 0.00 38.24 3.06
3239 3348 1.834263 CAACACAAACCCCCAAAAGGA 59.166 47.619 0.00 0.00 38.24 3.36
3240 3349 1.134250 CCAACACAAACCCCCAAAAGG 60.134 52.381 0.00 0.00 0.00 3.11
3246 3355 1.671166 GCATCCAACACAAACCCCC 59.329 57.895 0.00 0.00 0.00 5.40
3247 3356 1.671166 GGCATCCAACACAAACCCC 59.329 57.895 0.00 0.00 0.00 4.95
3256 3365 0.107654 ACGAGCTAAGGGCATCCAAC 60.108 55.000 0.00 0.00 44.79 3.77
3303 3414 3.282021 GCATTGAATAGGAAGCAGGTGA 58.718 45.455 0.00 0.00 0.00 4.02
3351 3462 7.394359 TGCTTGGAGCTATCTAAATTGAAGTTT 59.606 33.333 1.29 0.00 42.97 2.66
3371 3482 0.527565 AATTTAGCTGCGGTGCTTGG 59.472 50.000 0.00 0.00 43.74 3.61
3380 3491 4.335594 ACCGAGGTGATTTAATTTAGCTGC 59.664 41.667 0.00 0.00 0.00 5.25
3383 3494 5.526111 TGCTACCGAGGTGATTTAATTTAGC 59.474 40.000 4.80 2.47 0.00 3.09
3401 3512 4.202245 TGTTGAGGAGTTATGTGCTACC 57.798 45.455 0.00 0.00 0.00 3.18
3450 3561 3.369756 CGAACGGATGCAAAGCTAGTTAA 59.630 43.478 0.00 0.00 0.00 2.01
3524 3635 2.307098 AGTGCCTTTGCTGAGGAGTTAT 59.693 45.455 9.74 0.00 39.25 1.89
3555 3666 0.670546 CTACCCCTGCACGTGTGAAG 60.671 60.000 18.38 12.17 35.97 3.02
3572 3683 2.552599 TTTTGGGCATGTGTCGTCTA 57.447 45.000 0.00 0.00 0.00 2.59
3577 3688 3.742369 CACTGAAATTTTGGGCATGTGTC 59.258 43.478 0.00 0.00 0.00 3.67
3578 3689 3.494749 CCACTGAAATTTTGGGCATGTGT 60.495 43.478 0.00 0.00 0.00 3.72
3579 3690 3.068560 CCACTGAAATTTTGGGCATGTG 58.931 45.455 0.00 0.00 0.00 3.21
3580 3691 2.971330 TCCACTGAAATTTTGGGCATGT 59.029 40.909 7.40 0.00 0.00 3.21
3581 3692 3.592059 CTCCACTGAAATTTTGGGCATG 58.408 45.455 7.40 0.00 0.00 4.06
3582 3693 2.568509 CCTCCACTGAAATTTTGGGCAT 59.431 45.455 7.40 0.00 0.00 4.40
3583 3694 1.969923 CCTCCACTGAAATTTTGGGCA 59.030 47.619 7.40 0.00 0.00 5.36
3584 3695 1.338105 GCCTCCACTGAAATTTTGGGC 60.338 52.381 7.40 1.46 0.00 5.36
3585 3696 1.276138 GGCCTCCACTGAAATTTTGGG 59.724 52.381 7.40 0.96 0.00 4.12
3586 3697 1.276138 GGGCCTCCACTGAAATTTTGG 59.724 52.381 0.84 1.52 0.00 3.28
3587 3698 1.969923 TGGGCCTCCACTGAAATTTTG 59.030 47.619 4.53 0.00 38.32 2.44
3588 3699 2.397044 TGGGCCTCCACTGAAATTTT 57.603 45.000 4.53 0.00 38.32 1.82
3589 3700 2.250924 CTTGGGCCTCCACTGAAATTT 58.749 47.619 4.53 0.00 43.94 1.82
3590 3701 1.147817 ACTTGGGCCTCCACTGAAATT 59.852 47.619 4.53 0.00 43.94 1.82
3591 3702 0.779997 ACTTGGGCCTCCACTGAAAT 59.220 50.000 4.53 0.00 43.94 2.17
3592 3703 0.178992 CACTTGGGCCTCCACTGAAA 60.179 55.000 4.53 0.00 43.94 2.69
3593 3704 1.059584 TCACTTGGGCCTCCACTGAA 61.060 55.000 4.53 0.00 43.94 3.02
3594 3705 1.059584 TTCACTTGGGCCTCCACTGA 61.060 55.000 4.53 0.00 43.94 3.41
3595 3706 0.607489 CTTCACTTGGGCCTCCACTG 60.607 60.000 4.53 0.00 43.94 3.66
3596 3707 1.763770 CTTCACTTGGGCCTCCACT 59.236 57.895 4.53 0.00 43.94 4.00
3597 3708 1.303643 CCTTCACTTGGGCCTCCAC 60.304 63.158 4.53 0.00 43.94 4.02
3598 3709 1.463214 TCCTTCACTTGGGCCTCCA 60.463 57.895 4.53 0.00 42.25 3.86
3599 3710 1.301293 CTCCTTCACTTGGGCCTCC 59.699 63.158 4.53 0.00 0.00 4.30
3600 3711 1.301293 CCTCCTTCACTTGGGCCTC 59.699 63.158 4.53 0.00 0.00 4.70
3601 3712 2.234296 CCCTCCTTCACTTGGGCCT 61.234 63.158 4.53 0.00 32.49 5.19
3602 3713 2.356667 CCCTCCTTCACTTGGGCC 59.643 66.667 0.00 0.00 32.49 5.80
3604 3715 1.303643 GTGCCCTCCTTCACTTGGG 60.304 63.158 0.00 0.00 42.41 4.12
3605 3716 0.038744 ATGTGCCCTCCTTCACTTGG 59.961 55.000 0.00 0.00 34.49 3.61
3606 3717 1.915141 AATGTGCCCTCCTTCACTTG 58.085 50.000 0.00 0.00 34.49 3.16
3607 3718 2.158475 TCAAATGTGCCCTCCTTCACTT 60.158 45.455 0.00 0.00 34.49 3.16
3608 3719 1.425066 TCAAATGTGCCCTCCTTCACT 59.575 47.619 0.00 0.00 34.49 3.41
3609 3720 1.909700 TCAAATGTGCCCTCCTTCAC 58.090 50.000 0.00 0.00 0.00 3.18
3610 3721 2.905415 ATCAAATGTGCCCTCCTTCA 57.095 45.000 0.00 0.00 0.00 3.02
3611 3722 3.853475 CAAATCAAATGTGCCCTCCTTC 58.147 45.455 0.00 0.00 0.00 3.46
3612 3723 2.027837 GCAAATCAAATGTGCCCTCCTT 60.028 45.455 0.00 0.00 31.94 3.36
3613 3724 1.551883 GCAAATCAAATGTGCCCTCCT 59.448 47.619 0.00 0.00 31.94 3.69
3614 3725 1.551883 AGCAAATCAAATGTGCCCTCC 59.448 47.619 0.00 0.00 39.13 4.30
3615 3726 4.340381 AGATAGCAAATCAAATGTGCCCTC 59.660 41.667 0.00 0.00 39.13 4.30
3616 3727 4.098960 CAGATAGCAAATCAAATGTGCCCT 59.901 41.667 0.00 0.00 39.13 5.19
3617 3728 4.098349 TCAGATAGCAAATCAAATGTGCCC 59.902 41.667 0.00 0.00 39.13 5.36
3618 3729 5.252969 TCAGATAGCAAATCAAATGTGCC 57.747 39.130 0.00 0.00 39.13 5.01
3619 3730 5.163581 ACCTCAGATAGCAAATCAAATGTGC 60.164 40.000 2.37 0.00 38.59 4.57
3620 3731 6.446781 ACCTCAGATAGCAAATCAAATGTG 57.553 37.500 2.37 0.00 0.00 3.21
3621 3732 5.591877 GGACCTCAGATAGCAAATCAAATGT 59.408 40.000 2.37 0.00 0.00 2.71
3622 3733 5.009410 GGGACCTCAGATAGCAAATCAAATG 59.991 44.000 0.00 0.00 0.00 2.32
3623 3734 5.136105 GGGACCTCAGATAGCAAATCAAAT 58.864 41.667 0.00 0.00 0.00 2.32
3624 3735 4.018506 TGGGACCTCAGATAGCAAATCAAA 60.019 41.667 0.00 0.00 0.00 2.69
3625 3736 3.523157 TGGGACCTCAGATAGCAAATCAA 59.477 43.478 0.00 0.00 0.00 2.57
3626 3737 3.114606 TGGGACCTCAGATAGCAAATCA 58.885 45.455 0.00 0.00 0.00 2.57
3627 3738 3.845781 TGGGACCTCAGATAGCAAATC 57.154 47.619 0.00 0.00 0.00 2.17
3628 3739 3.525199 AGTTGGGACCTCAGATAGCAAAT 59.475 43.478 0.00 0.00 0.00 2.32
3629 3740 2.912956 AGTTGGGACCTCAGATAGCAAA 59.087 45.455 0.00 0.00 0.00 3.68
3630 3741 2.551270 AGTTGGGACCTCAGATAGCAA 58.449 47.619 0.00 0.00 0.00 3.91
3631 3742 2.254152 AGTTGGGACCTCAGATAGCA 57.746 50.000 0.00 0.00 0.00 3.49
3632 3743 3.301274 ACTAGTTGGGACCTCAGATAGC 58.699 50.000 0.00 0.00 0.00 2.97
3633 3744 7.419711 TTTTACTAGTTGGGACCTCAGATAG 57.580 40.000 0.00 0.00 0.00 2.08
3634 3745 7.456902 ACTTTTTACTAGTTGGGACCTCAGATA 59.543 37.037 0.00 0.00 0.00 1.98
3635 3746 6.272558 ACTTTTTACTAGTTGGGACCTCAGAT 59.727 38.462 0.00 0.00 0.00 2.90
3636 3747 5.605488 ACTTTTTACTAGTTGGGACCTCAGA 59.395 40.000 0.00 0.00 0.00 3.27
3637 3748 5.866207 ACTTTTTACTAGTTGGGACCTCAG 58.134 41.667 0.00 0.00 0.00 3.35
3638 3749 5.899631 ACTTTTTACTAGTTGGGACCTCA 57.100 39.130 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.