Multiple sequence alignment - TraesCS1D01G214500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G214500 chr1D 100.000 2672 0 0 1 2672 299756176 299758847 0.000000e+00 4935.0
1 TraesCS1D01G214500 chr1B 92.759 1450 53 24 681 2092 403976159 403977594 0.000000e+00 2049.0
2 TraesCS1D01G214500 chr1B 94.853 408 18 3 2266 2672 45357783 45357378 3.750000e-178 634.0
3 TraesCS1D01G214500 chr1B 96.377 138 5 0 2140 2277 403977736 403977873 7.440000e-56 228.0
4 TraesCS1D01G214500 chr1A 90.643 1026 52 20 1288 2277 374137257 374138274 0.000000e+00 1323.0
5 TraesCS1D01G214500 chr1A 96.745 553 16 2 661 1211 374136440 374136992 0.000000e+00 920.0
6 TraesCS1D01G214500 chr1A 89.318 674 37 8 1 660 374135389 374136041 0.000000e+00 813.0
7 TraesCS1D01G214500 chr1A 93.250 400 21 5 2275 2672 329180526 329180921 3.830000e-163 584.0
8 TraesCS1D01G214500 chr4D 95.238 399 17 2 2275 2672 42242606 42242209 4.850000e-177 630.0
9 TraesCS1D01G214500 chr5B 94.987 399 18 2 2275 2672 22071433 22071830 2.260000e-175 625.0
10 TraesCS1D01G214500 chr5B 93.596 406 23 3 2268 2670 59672261 59671856 1.060000e-168 603.0
11 TraesCS1D01G214500 chr7D 94.015 401 22 2 2273 2672 210382591 210382990 8.180000e-170 606.0
12 TraesCS1D01G214500 chr7D 93.220 59 4 0 298 356 453137185 453137127 1.320000e-13 87.9
13 TraesCS1D01G214500 chr6D 93.532 402 22 3 2273 2672 417527582 417527981 1.770000e-166 595.0
14 TraesCS1D01G214500 chr6B 93.484 399 24 2 2275 2672 459570222 459569825 2.290000e-165 592.0
15 TraesCS1D01G214500 chr3D 93.017 401 24 3 2274 2672 75150758 75151156 1.380000e-162 582.0
16 TraesCS1D01G214500 chr4B 83.704 135 22 0 1505 1639 654728276 654728142 7.760000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G214500 chr1D 299756176 299758847 2671 False 4935.000000 4935 100.000000 1 2672 1 chr1D.!!$F1 2671
1 TraesCS1D01G214500 chr1B 403976159 403977873 1714 False 1138.500000 2049 94.568000 681 2277 2 chr1B.!!$F1 1596
2 TraesCS1D01G214500 chr1A 374135389 374138274 2885 False 1018.666667 1323 92.235333 1 2277 3 chr1A.!!$F2 2276

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
346 347 0.243636 GTCGTCTTGGGCCCAATTTG 59.756 55.0 37.1 26.75 35.2 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2343 3070 0.240945 CGGAGCTCCAAACGCATTTT 59.759 50.0 31.67 0.0 35.14 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 5.270853 TCACACACGAGTATTCATATCACG 58.729 41.667 0.00 0.00 0.00 4.35
45 46 6.226052 AGTATTCATATCACGCATCATGTGT 58.774 36.000 0.00 0.00 42.58 3.72
57 58 2.014335 TCATGTGTGATGCTCGAAGG 57.986 50.000 0.00 0.00 0.00 3.46
98 99 5.114423 CGTAAGTAAATCGTTTGCCAACAAC 59.886 40.000 1.21 0.00 34.87 3.32
106 107 0.734253 TTTGCCAACAACGCACACAC 60.734 50.000 0.00 0.00 35.56 3.82
123 124 7.003648 CGCACACACATATACTATTTGAATCG 58.996 38.462 0.00 0.00 0.00 3.34
243 244 1.002624 ATGGGCCGTCGAACACATT 60.003 52.632 0.00 0.00 0.00 2.71
244 245 0.608035 ATGGGCCGTCGAACACATTT 60.608 50.000 0.00 0.00 0.00 2.32
246 247 0.386731 GGGCCGTCGAACACATTTTG 60.387 55.000 0.00 0.00 0.00 2.44
303 304 2.995466 ATGTGTTCATTGCCAGTTCG 57.005 45.000 0.00 0.00 0.00 3.95
304 305 1.960417 TGTGTTCATTGCCAGTTCGA 58.040 45.000 0.00 0.00 0.00 3.71
305 306 2.503331 TGTGTTCATTGCCAGTTCGAT 58.497 42.857 0.00 0.00 0.00 3.59
306 307 2.483877 TGTGTTCATTGCCAGTTCGATC 59.516 45.455 0.00 0.00 0.00 3.69
307 308 2.483877 GTGTTCATTGCCAGTTCGATCA 59.516 45.455 0.00 0.00 0.00 2.92
308 309 3.058293 GTGTTCATTGCCAGTTCGATCAA 60.058 43.478 0.00 0.00 0.00 2.57
309 310 3.567585 TGTTCATTGCCAGTTCGATCAAA 59.432 39.130 0.00 0.00 0.00 2.69
310 311 4.218200 TGTTCATTGCCAGTTCGATCAAAT 59.782 37.500 0.00 0.00 0.00 2.32
311 312 4.359971 TCATTGCCAGTTCGATCAAATG 57.640 40.909 0.00 0.00 0.00 2.32
344 345 0.893727 GTGTCGTCTTGGGCCCAATT 60.894 55.000 37.10 0.00 35.20 2.32
346 347 0.243636 GTCGTCTTGGGCCCAATTTG 59.756 55.000 37.10 26.75 35.20 2.32
349 350 0.396060 GTCTTGGGCCCAATTTGCAA 59.604 50.000 37.10 14.20 35.20 4.08
361 362 3.792956 CCAATTTGCAATAGTGATCGCAC 59.207 43.478 9.33 0.00 45.49 5.34
375 376 4.814234 GTGATCGCACATAATTGGTTCCTA 59.186 41.667 0.16 0.00 44.51 2.94
399 400 1.654137 CGTTTGCCACTCAACGCAC 60.654 57.895 0.00 0.00 33.97 5.34
401 402 3.462333 TTTGCCACTCAACGCACGC 62.462 57.895 0.00 0.00 33.97 5.34
420 421 2.639286 GCTTGTGTGGCGGAACTG 59.361 61.111 0.00 0.00 0.00 3.16
455 461 7.985634 TTTGACTTATTGCAAACAGTTCTTC 57.014 32.000 13.54 3.95 0.00 2.87
463 469 3.378112 TGCAAACAGTTCTTCCAACAGAG 59.622 43.478 0.00 0.00 0.00 3.35
465 471 4.276926 GCAAACAGTTCTTCCAACAGAGAT 59.723 41.667 0.00 0.00 0.00 2.75
470 476 6.459923 ACAGTTCTTCCAACAGAGATAGAAC 58.540 40.000 0.00 0.00 40.91 3.01
512 518 6.525628 CACACATATCTTCTCAAATTGTGCAC 59.474 38.462 10.75 10.75 37.17 4.57
513 519 5.735892 CACATATCTTCTCAAATTGTGCACG 59.264 40.000 13.13 0.00 0.00 5.34
597 604 5.197549 CGGTTTCTACATCGCACATAATTG 58.802 41.667 0.00 0.00 0.00 2.32
598 605 5.510671 GGTTTCTACATCGCACATAATTGG 58.489 41.667 0.00 0.00 0.00 3.16
625 632 6.273071 TCAAAGATGTGTGATAGGTGTATCG 58.727 40.000 0.00 0.00 38.37 2.92
628 643 3.685836 TGTGTGATAGGTGTATCGTCG 57.314 47.619 0.00 0.00 38.37 5.12
635 650 0.376152 AGGTGTATCGTCGTAGCACG 59.624 55.000 2.79 2.79 44.19 5.34
653 668 0.872388 CGGTTTTGCACTAGTGTCCC 59.128 55.000 23.44 14.38 0.00 4.46
660 675 4.425180 TTGCACTAGTGTCCCTTAAACA 57.575 40.909 23.44 7.28 0.00 2.83
661 676 4.425180 TGCACTAGTGTCCCTTAAACAA 57.575 40.909 23.44 0.00 0.00 2.83
662 677 4.980573 TGCACTAGTGTCCCTTAAACAAT 58.019 39.130 23.44 0.00 0.00 2.71
663 678 4.759693 TGCACTAGTGTCCCTTAAACAATG 59.240 41.667 23.44 0.00 0.00 2.82
665 680 5.106673 GCACTAGTGTCCCTTAAACAATGTC 60.107 44.000 23.44 0.00 0.00 3.06
666 681 6.231211 CACTAGTGTCCCTTAAACAATGTCT 58.769 40.000 15.06 0.00 0.00 3.41
667 682 6.710744 CACTAGTGTCCCTTAAACAATGTCTT 59.289 38.462 15.06 0.00 0.00 3.01
668 683 7.228706 CACTAGTGTCCCTTAAACAATGTCTTT 59.771 37.037 15.06 0.00 0.00 2.52
671 686 8.166422 AGTGTCCCTTAAACAATGTCTTTTAG 57.834 34.615 0.00 0.00 0.00 1.85
672 687 7.230712 AGTGTCCCTTAAACAATGTCTTTTAGG 59.769 37.037 0.00 0.00 0.00 2.69
673 688 7.229907 GTGTCCCTTAAACAATGTCTTTTAGGA 59.770 37.037 4.87 0.00 0.00 2.94
675 690 8.244113 GTCCCTTAAACAATGTCTTTTAGGATG 58.756 37.037 4.87 0.00 0.00 3.51
817 1231 0.250553 CACGGGTTGAAACAGGCCTA 60.251 55.000 3.98 0.00 0.00 3.93
932 1347 4.023450 CGACCTCTATATAACGCCAAGACA 60.023 45.833 0.00 0.00 0.00 3.41
1065 1480 3.857157 AACCTCCTCTTGTTTGCAGTA 57.143 42.857 0.00 0.00 0.00 2.74
1720 2331 2.573462 TGATCTCCCACAAAGAGAAGGG 59.427 50.000 0.00 0.00 43.35 3.95
1798 2411 5.592054 TGCGTTCAATAACCAAATTGTTGA 58.408 33.333 0.00 0.00 44.12 3.18
1853 2468 5.405331 AAACTTTTGAGTCGTAGCTTGTC 57.595 39.130 0.00 0.00 0.00 3.18
1854 2469 4.054780 ACTTTTGAGTCGTAGCTTGTCA 57.945 40.909 0.00 0.00 0.00 3.58
1879 2494 3.560896 GTGACCATTGCATTTTGCTTTGT 59.439 39.130 0.75 0.00 45.31 2.83
1911 2526 0.995728 CCGTTTGTTGTTGGTGTTGC 59.004 50.000 0.00 0.00 0.00 4.17
1928 2543 5.220416 GGTGTTGCTGTCGTTACATTATCTC 60.220 44.000 0.00 0.00 34.37 2.75
2053 2678 5.306678 AGGGAAATTTGACCAAACTGCAATA 59.693 36.000 10.28 0.00 32.51 1.90
2072 2702 9.383519 CTGCAATATCTTTGTTCTTAGACCTTA 57.616 33.333 0.00 0.00 0.00 2.69
2128 2772 7.899841 CAGTTCAATTAATACAGTGTCACATCG 59.100 37.037 0.00 0.00 0.00 3.84
2284 3011 5.461032 TAAGCCTAGCTTAGAGCATCTTC 57.539 43.478 4.96 0.00 46.84 2.87
2285 3012 4.895889 TAAGCCTAGCTTAGAGCATCTTCA 59.104 41.667 4.96 0.00 46.84 3.02
2286 3013 5.363868 TAAGCCTAGCTTAGAGCATCTTCAA 59.636 40.000 4.96 0.00 46.84 2.69
2287 3014 6.042552 TAAGCCTAGCTTAGAGCATCTTCAAT 59.957 38.462 4.96 0.00 46.84 2.57
2288 3015 7.233553 TAAGCCTAGCTTAGAGCATCTTCAATA 59.766 37.037 4.96 0.00 46.84 1.90
2305 3032 8.648698 TCTTCAATAGATGGTCCAAATTTTGA 57.351 30.769 10.72 2.32 0.00 2.69
2306 3033 8.522830 TCTTCAATAGATGGTCCAAATTTTGAC 58.477 33.333 12.79 12.79 0.00 3.18
2307 3034 6.851609 TCAATAGATGGTCCAAATTTTGACG 58.148 36.000 14.31 1.28 0.00 4.35
2308 3035 5.835113 ATAGATGGTCCAAATTTTGACGG 57.165 39.130 14.31 1.67 0.00 4.79
2309 3036 3.496331 AGATGGTCCAAATTTTGACGGT 58.504 40.909 14.31 6.99 0.00 4.83
2310 3037 3.506067 AGATGGTCCAAATTTTGACGGTC 59.494 43.478 14.31 13.77 0.00 4.79
2311 3038 1.957877 TGGTCCAAATTTTGACGGTCC 59.042 47.619 14.31 8.45 0.00 4.46
2312 3039 1.957877 GGTCCAAATTTTGACGGTCCA 59.042 47.619 14.31 0.00 0.00 4.02
2313 3040 2.362717 GGTCCAAATTTTGACGGTCCAA 59.637 45.455 14.31 0.00 0.00 3.53
2314 3041 3.181474 GGTCCAAATTTTGACGGTCCAAA 60.181 43.478 14.31 9.48 34.56 3.28
2315 3042 4.434520 GTCCAAATTTTGACGGTCCAAAA 58.565 39.130 10.72 13.64 46.18 2.44
2316 3043 4.269123 GTCCAAATTTTGACGGTCCAAAAC 59.731 41.667 10.72 2.08 45.32 2.43
2317 3044 3.558006 CCAAATTTTGACGGTCCAAAACC 59.442 43.478 10.72 0.00 45.32 3.27
2329 3056 5.638596 GGTCCAAAACCGAAGATGTTAAT 57.361 39.130 0.00 0.00 38.58 1.40
2330 3057 6.020971 GGTCCAAAACCGAAGATGTTAATT 57.979 37.500 0.00 0.00 38.58 1.40
2331 3058 6.452242 GGTCCAAAACCGAAGATGTTAATTT 58.548 36.000 0.00 0.00 38.58 1.82
2332 3059 6.926826 GGTCCAAAACCGAAGATGTTAATTTT 59.073 34.615 0.00 0.00 38.58 1.82
2333 3060 7.095816 GGTCCAAAACCGAAGATGTTAATTTTG 60.096 37.037 9.64 9.64 38.58 2.44
2334 3061 6.926272 TCCAAAACCGAAGATGTTAATTTTGG 59.074 34.615 20.56 20.56 0.00 3.28
2335 3062 6.926272 CCAAAACCGAAGATGTTAATTTTGGA 59.074 34.615 21.34 0.00 0.00 3.53
2336 3063 7.095816 CCAAAACCGAAGATGTTAATTTTGGAC 60.096 37.037 21.34 0.00 0.00 4.02
2337 3064 5.638596 ACCGAAGATGTTAATTTTGGACC 57.361 39.130 0.00 0.00 0.00 4.46
2338 3065 4.155280 ACCGAAGATGTTAATTTTGGACCG 59.845 41.667 0.00 0.00 0.00 4.79
2339 3066 4.095610 CGAAGATGTTAATTTTGGACCGC 58.904 43.478 0.00 0.00 0.00 5.68
2340 3067 4.421058 GAAGATGTTAATTTTGGACCGCC 58.579 43.478 0.00 0.00 0.00 6.13
2341 3068 3.426615 AGATGTTAATTTTGGACCGCCA 58.573 40.909 0.00 0.00 44.17 5.69
2361 3088 2.438868 AAAAATGCGTTTGGAGCTCC 57.561 45.000 26.78 26.78 35.28 4.70
2362 3089 0.240945 AAAATGCGTTTGGAGCTCCG 59.759 50.000 27.43 16.29 39.43 4.63
2363 3090 0.605319 AAATGCGTTTGGAGCTCCGA 60.605 50.000 27.43 23.72 39.43 4.55
2364 3091 0.605319 AATGCGTTTGGAGCTCCGAA 60.605 50.000 28.68 28.68 39.43 4.30
2365 3092 0.605319 ATGCGTTTGGAGCTCCGAAA 60.605 50.000 32.87 25.65 40.89 3.46
2366 3093 0.816018 TGCGTTTGGAGCTCCGAAAA 60.816 50.000 32.87 22.77 40.89 2.29
2367 3094 0.309612 GCGTTTGGAGCTCCGAAAAA 59.690 50.000 32.87 22.09 40.89 1.94
2386 3113 5.665916 AAAAAGGCCAACTCCAATAGATG 57.334 39.130 5.01 0.00 0.00 2.90
2390 3117 2.749800 GGCCAACTCCAATAGATGGTCC 60.750 54.545 0.00 2.35 44.82 4.46
2391 3118 5.280263 GGCCAACTCCAATAGATGGTCCA 62.280 52.174 0.00 0.00 44.82 4.02
2392 3119 6.701067 GGCCAACTCCAATAGATGGTCCAA 62.701 50.000 0.00 0.00 44.82 3.53
2400 3127 6.964807 CCAATAGATGGTCCAAATTCATGA 57.035 37.500 0.00 0.00 44.85 3.07
2401 3128 7.534723 CCAATAGATGGTCCAAATTCATGAT 57.465 36.000 0.00 0.00 44.85 2.45
2402 3129 7.600065 CCAATAGATGGTCCAAATTCATGATC 58.400 38.462 0.00 0.00 44.85 2.92
2403 3130 7.309621 CCAATAGATGGTCCAAATTCATGATCC 60.310 40.741 0.00 0.00 44.85 3.36
2404 3131 5.133383 AGATGGTCCAAATTCATGATCCA 57.867 39.130 0.00 0.00 0.00 3.41
2405 3132 5.521696 AGATGGTCCAAATTCATGATCCAA 58.478 37.500 0.00 0.00 0.00 3.53
2406 3133 5.959594 AGATGGTCCAAATTCATGATCCAAA 59.040 36.000 0.00 0.00 0.00 3.28
2407 3134 6.441284 AGATGGTCCAAATTCATGATCCAAAA 59.559 34.615 0.00 0.00 0.00 2.44
2408 3135 6.040209 TGGTCCAAATTCATGATCCAAAAG 57.960 37.500 0.00 0.00 0.00 2.27
2409 3136 5.779260 TGGTCCAAATTCATGATCCAAAAGA 59.221 36.000 0.00 0.00 0.00 2.52
2410 3137 6.071221 TGGTCCAAATTCATGATCCAAAAGAG 60.071 38.462 0.00 0.00 0.00 2.85
2411 3138 5.809051 GTCCAAATTCATGATCCAAAAGAGC 59.191 40.000 0.00 0.00 0.00 4.09
2412 3139 5.481122 TCCAAATTCATGATCCAAAAGAGCA 59.519 36.000 0.00 0.00 46.87 4.26
2413 3140 6.014413 TCCAAATTCATGATCCAAAAGAGCAA 60.014 34.615 0.00 0.00 45.73 3.91
2414 3141 6.091713 CCAAATTCATGATCCAAAAGAGCAAC 59.908 38.462 0.00 0.00 45.73 4.17
2415 3142 6.600882 AATTCATGATCCAAAAGAGCAACT 57.399 33.333 0.00 0.00 45.73 3.16
2416 3143 5.633830 TTCATGATCCAAAAGAGCAACTC 57.366 39.130 0.00 0.00 45.73 3.01
2417 3144 4.012374 TCATGATCCAAAAGAGCAACTCC 58.988 43.478 0.00 0.00 45.73 3.85
2418 3145 3.507162 TGATCCAAAAGAGCAACTCCA 57.493 42.857 0.00 0.00 38.14 3.86
2419 3146 3.831323 TGATCCAAAAGAGCAACTCCAA 58.169 40.909 0.00 0.00 38.14 3.53
2420 3147 4.410099 TGATCCAAAAGAGCAACTCCAAT 58.590 39.130 0.00 0.00 38.14 3.16
2421 3148 5.569355 TGATCCAAAAGAGCAACTCCAATA 58.431 37.500 0.00 0.00 38.14 1.90
2422 3149 5.649395 TGATCCAAAAGAGCAACTCCAATAG 59.351 40.000 0.00 0.00 38.14 1.73
2423 3150 4.335416 TCCAAAAGAGCAACTCCAATAGG 58.665 43.478 0.00 0.00 0.00 2.57
2424 3151 4.082125 CCAAAAGAGCAACTCCAATAGGT 58.918 43.478 0.00 0.00 35.89 3.08
2425 3152 5.013704 TCCAAAAGAGCAACTCCAATAGGTA 59.986 40.000 0.00 0.00 35.89 3.08
2426 3153 5.355350 CCAAAAGAGCAACTCCAATAGGTAG 59.645 44.000 0.00 0.00 35.89 3.18
2427 3154 5.763876 AAAGAGCAACTCCAATAGGTAGT 57.236 39.130 0.00 0.00 35.89 2.73
2428 3155 5.346181 AAGAGCAACTCCAATAGGTAGTC 57.654 43.478 0.00 0.00 35.89 2.59
2429 3156 3.707102 AGAGCAACTCCAATAGGTAGTCC 59.293 47.826 0.00 0.00 35.89 3.85
2430 3157 3.450904 AGCAACTCCAATAGGTAGTCCA 58.549 45.455 0.00 0.00 35.89 4.02
2431 3158 3.844211 AGCAACTCCAATAGGTAGTCCAA 59.156 43.478 0.00 0.00 35.89 3.53
2432 3159 4.288626 AGCAACTCCAATAGGTAGTCCAAA 59.711 41.667 0.00 0.00 35.89 3.28
2433 3160 5.044846 AGCAACTCCAATAGGTAGTCCAAAT 60.045 40.000 0.00 0.00 35.89 2.32
2434 3161 5.652452 GCAACTCCAATAGGTAGTCCAAATT 59.348 40.000 0.00 0.00 35.89 1.82
2435 3162 6.183360 GCAACTCCAATAGGTAGTCCAAATTC 60.183 42.308 0.00 0.00 35.89 2.17
2436 3163 6.636454 ACTCCAATAGGTAGTCCAAATTCA 57.364 37.500 0.00 0.00 35.89 2.57
2437 3164 7.213178 ACTCCAATAGGTAGTCCAAATTCAT 57.787 36.000 0.00 0.00 35.89 2.57
2438 3165 7.056635 ACTCCAATAGGTAGTCCAAATTCATG 58.943 38.462 0.00 0.00 35.89 3.07
2439 3166 6.364701 TCCAATAGGTAGTCCAAATTCATGG 58.635 40.000 0.00 0.00 37.76 3.66
2440 3167 6.069088 TCCAATAGGTAGTCCAAATTCATGGT 60.069 38.462 0.00 0.00 37.70 3.55
2441 3168 6.263168 CCAATAGGTAGTCCAAATTCATGGTC 59.737 42.308 0.00 0.00 41.46 4.02
2442 3169 4.236527 AGGTAGTCCAAATTCATGGTCC 57.763 45.455 0.00 0.00 41.46 4.46
2443 3170 3.591527 AGGTAGTCCAAATTCATGGTCCA 59.408 43.478 0.00 0.00 41.46 4.02
2444 3171 4.044065 AGGTAGTCCAAATTCATGGTCCAA 59.956 41.667 0.00 0.00 41.46 3.53
2445 3172 4.770010 GGTAGTCCAAATTCATGGTCCAAA 59.230 41.667 0.00 0.00 41.46 3.28
2446 3173 5.245075 GGTAGTCCAAATTCATGGTCCAAAA 59.755 40.000 0.00 0.00 41.46 2.44
2447 3174 5.213891 AGTCCAAATTCATGGTCCAAAAC 57.786 39.130 0.00 0.00 41.46 2.43
2455 3182 3.680786 GGTCCAAAACCGGCCAGC 61.681 66.667 0.00 0.00 38.58 4.85
2456 3183 2.909965 GTCCAAAACCGGCCAGCA 60.910 61.111 0.00 0.00 0.00 4.41
2457 3184 2.597217 TCCAAAACCGGCCAGCAG 60.597 61.111 0.00 0.00 0.00 4.24
2458 3185 4.362476 CCAAAACCGGCCAGCAGC 62.362 66.667 0.00 0.00 42.60 5.25
2483 3210 4.528674 CTGCTGTTCAGCCGCTAT 57.471 55.556 19.91 0.00 35.78 2.97
2484 3211 2.305405 CTGCTGTTCAGCCGCTATC 58.695 57.895 19.91 0.00 35.78 2.08
2485 3212 1.153369 TGCTGTTCAGCCGCTATCC 60.153 57.895 19.91 0.00 0.00 2.59
2486 3213 1.153369 GCTGTTCAGCCGCTATCCA 60.153 57.895 13.11 0.00 0.00 3.41
2487 3214 1.156645 GCTGTTCAGCCGCTATCCAG 61.157 60.000 13.11 0.31 0.00 3.86
2488 3215 1.153369 TGTTCAGCCGCTATCCAGC 60.153 57.895 0.00 0.00 44.90 4.85
2489 3216 1.889573 GTTCAGCCGCTATCCAGCC 60.890 63.158 0.00 0.00 45.64 4.85
2490 3217 2.366393 TTCAGCCGCTATCCAGCCA 61.366 57.895 0.00 0.00 45.64 4.75
2491 3218 2.590007 CAGCCGCTATCCAGCCAC 60.590 66.667 0.00 0.00 45.64 5.01
2492 3219 2.765807 AGCCGCTATCCAGCCACT 60.766 61.111 0.00 0.00 45.64 4.00
2493 3220 2.590007 GCCGCTATCCAGCCACTG 60.590 66.667 0.00 0.00 45.64 3.66
2494 3221 2.903357 CCGCTATCCAGCCACTGT 59.097 61.111 0.00 0.00 45.64 3.55
2495 3222 2.028125 GCCGCTATCCAGCCACTGTA 62.028 60.000 0.00 0.00 45.64 2.74
2496 3223 0.249489 CCGCTATCCAGCCACTGTAC 60.249 60.000 0.00 0.00 45.64 2.90
2497 3224 0.459899 CGCTATCCAGCCACTGTACA 59.540 55.000 0.00 0.00 45.64 2.90
2498 3225 1.536922 CGCTATCCAGCCACTGTACAG 60.537 57.143 21.44 21.44 45.64 2.74
2499 3226 1.808133 GCTATCCAGCCACTGTACAGC 60.808 57.143 22.90 10.15 42.37 4.40
2500 3227 0.830648 TATCCAGCCACTGTACAGCC 59.169 55.000 22.90 11.27 0.00 4.85
2501 3228 2.244117 ATCCAGCCACTGTACAGCCG 62.244 60.000 22.90 13.78 0.00 5.52
2502 3229 3.121030 CAGCCACTGTACAGCCGC 61.121 66.667 22.90 22.06 0.00 6.53
2503 3230 3.625897 AGCCACTGTACAGCCGCA 61.626 61.111 27.35 0.00 0.00 5.69
2504 3231 3.423154 GCCACTGTACAGCCGCAC 61.423 66.667 22.90 4.61 0.00 5.34
2505 3232 2.030412 CCACTGTACAGCCGCACA 59.970 61.111 22.90 0.00 0.00 4.57
2506 3233 1.375908 CCACTGTACAGCCGCACAT 60.376 57.895 22.90 0.00 0.00 3.21
2507 3234 0.108377 CCACTGTACAGCCGCACATA 60.108 55.000 22.90 0.00 0.00 2.29
2508 3235 1.473257 CCACTGTACAGCCGCACATAT 60.473 52.381 22.90 0.00 0.00 1.78
2509 3236 2.279741 CACTGTACAGCCGCACATATT 58.720 47.619 22.90 0.00 0.00 1.28
2510 3237 2.677836 CACTGTACAGCCGCACATATTT 59.322 45.455 22.90 0.00 0.00 1.40
2511 3238 2.936498 ACTGTACAGCCGCACATATTTC 59.064 45.455 22.90 0.00 0.00 2.17
2512 3239 2.935849 CTGTACAGCCGCACATATTTCA 59.064 45.455 10.54 0.00 0.00 2.69
2513 3240 3.339141 TGTACAGCCGCACATATTTCAA 58.661 40.909 0.00 0.00 0.00 2.69
2514 3241 3.753797 TGTACAGCCGCACATATTTCAAA 59.246 39.130 0.00 0.00 0.00 2.69
2515 3242 3.932545 ACAGCCGCACATATTTCAAAA 57.067 38.095 0.00 0.00 0.00 2.44
2516 3243 4.454728 ACAGCCGCACATATTTCAAAAT 57.545 36.364 0.00 0.00 0.00 1.82
2517 3244 5.574891 ACAGCCGCACATATTTCAAAATA 57.425 34.783 0.00 0.00 35.52 1.40
2518 3245 5.960113 ACAGCCGCACATATTTCAAAATAA 58.040 33.333 0.00 0.00 34.79 1.40
2519 3246 5.804979 ACAGCCGCACATATTTCAAAATAAC 59.195 36.000 0.00 0.00 34.79 1.89
2520 3247 5.804473 CAGCCGCACATATTTCAAAATAACA 59.196 36.000 0.00 0.00 34.79 2.41
2521 3248 6.476380 CAGCCGCACATATTTCAAAATAACAT 59.524 34.615 0.00 0.00 34.79 2.71
2522 3249 7.010367 CAGCCGCACATATTTCAAAATAACATT 59.990 33.333 0.00 0.00 34.79 2.71
2523 3250 8.194104 AGCCGCACATATTTCAAAATAACATTA 58.806 29.630 0.00 0.00 34.79 1.90
2524 3251 8.812329 GCCGCACATATTTCAAAATAACATTAA 58.188 29.630 0.00 0.00 34.79 1.40
2551 3278 9.487790 AAAAATTCACGTCCACAATATCAAATT 57.512 25.926 0.00 0.00 0.00 1.82
2557 3284 9.384764 TCACGTCCACAATATCAAATTATTACA 57.615 29.630 0.00 0.00 0.00 2.41
2580 3307 8.503458 ACATAGTTCTTCAGATCCAGAAAATG 57.497 34.615 14.57 14.57 34.14 2.32
2581 3308 5.893897 AGTTCTTCAGATCCAGAAAATGC 57.106 39.130 2.05 0.00 30.76 3.56
2582 3309 5.319453 AGTTCTTCAGATCCAGAAAATGCA 58.681 37.500 0.00 0.00 30.76 3.96
2583 3310 5.771666 AGTTCTTCAGATCCAGAAAATGCAA 59.228 36.000 0.00 0.00 30.76 4.08
2584 3311 6.436532 AGTTCTTCAGATCCAGAAAATGCAAT 59.563 34.615 0.00 0.00 30.76 3.56
2585 3312 6.203808 TCTTCAGATCCAGAAAATGCAATG 57.796 37.500 0.00 0.00 0.00 2.82
2586 3313 4.380841 TCAGATCCAGAAAATGCAATGC 57.619 40.909 0.00 0.00 0.00 3.56
2587 3314 3.764972 TCAGATCCAGAAAATGCAATGCA 59.235 39.130 11.44 11.44 44.86 3.96
2588 3315 4.221041 TCAGATCCAGAAAATGCAATGCAA 59.779 37.500 13.45 0.00 43.62 4.08
2589 3316 4.328983 CAGATCCAGAAAATGCAATGCAAC 59.671 41.667 13.45 4.54 43.62 4.17
2590 3317 3.747854 TCCAGAAAATGCAATGCAACA 57.252 38.095 13.45 0.00 43.62 3.33
2591 3318 3.391965 TCCAGAAAATGCAATGCAACAC 58.608 40.909 13.45 4.53 43.62 3.32
2592 3319 3.132160 CCAGAAAATGCAATGCAACACA 58.868 40.909 13.45 0.00 43.62 3.72
2593 3320 3.560481 CCAGAAAATGCAATGCAACACAA 59.440 39.130 13.45 0.00 43.62 3.33
2594 3321 4.035324 CCAGAAAATGCAATGCAACACAAA 59.965 37.500 13.45 0.00 43.62 2.83
2595 3322 5.278071 CCAGAAAATGCAATGCAACACAAAT 60.278 36.000 13.45 0.00 43.62 2.32
2596 3323 6.073167 CCAGAAAATGCAATGCAACACAAATA 60.073 34.615 13.45 0.00 43.62 1.40
2597 3324 6.793203 CAGAAAATGCAATGCAACACAAATAC 59.207 34.615 13.45 0.00 43.62 1.89
2598 3325 6.482641 AGAAAATGCAATGCAACACAAATACA 59.517 30.769 13.45 0.00 43.62 2.29
2599 3326 6.615264 AAATGCAATGCAACACAAATACAA 57.385 29.167 13.45 0.00 43.62 2.41
2600 3327 5.594724 ATGCAATGCAACACAAATACAAC 57.405 34.783 13.45 0.00 43.62 3.32
2601 3328 4.436332 TGCAATGCAACACAAATACAACA 58.564 34.783 5.01 0.00 34.76 3.33
2602 3329 5.055144 TGCAATGCAACACAAATACAACAT 58.945 33.333 5.01 0.00 34.76 2.71
2603 3330 6.218746 TGCAATGCAACACAAATACAACATA 58.781 32.000 5.01 0.00 34.76 2.29
2604 3331 6.365518 TGCAATGCAACACAAATACAACATAG 59.634 34.615 5.01 0.00 34.76 2.23
2605 3332 6.365789 GCAATGCAACACAAATACAACATAGT 59.634 34.615 0.00 0.00 0.00 2.12
2606 3333 7.095691 GCAATGCAACACAAATACAACATAGTT 60.096 33.333 0.00 0.00 0.00 2.24
2607 3334 8.763356 CAATGCAACACAAATACAACATAGTTT 58.237 29.630 0.00 0.00 0.00 2.66
2608 3335 8.885494 ATGCAACACAAATACAACATAGTTTT 57.115 26.923 0.00 0.00 0.00 2.43
2609 3336 8.124586 TGCAACACAAATACAACATAGTTTTG 57.875 30.769 0.00 0.00 34.34 2.44
2610 3337 7.062848 GCAACACAAATACAACATAGTTTTGC 58.937 34.615 0.00 0.00 36.12 3.68
2611 3338 7.254252 GCAACACAAATACAACATAGTTTTGCA 60.254 33.333 0.00 0.00 40.42 4.08
2612 3339 7.692908 ACACAAATACAACATAGTTTTGCAC 57.307 32.000 0.00 0.00 31.99 4.57
2613 3340 7.261325 ACACAAATACAACATAGTTTTGCACA 58.739 30.769 0.00 0.00 31.99 4.57
2614 3341 7.761704 ACACAAATACAACATAGTTTTGCACAA 59.238 29.630 0.00 0.00 31.99 3.33
2615 3342 8.763356 CACAAATACAACATAGTTTTGCACAAT 58.237 29.630 0.00 0.00 31.99 2.71
2616 3343 9.973450 ACAAATACAACATAGTTTTGCACAATA 57.027 25.926 0.00 0.00 31.99 1.90
2618 3345 9.973450 AAATACAACATAGTTTTGCACAATACA 57.027 25.926 6.71 0.00 0.00 2.29
2619 3346 9.973450 AATACAACATAGTTTTGCACAATACAA 57.027 25.926 6.71 0.00 0.00 2.41
2620 3347 7.692908 ACAACATAGTTTTGCACAATACAAC 57.307 32.000 6.71 0.00 0.00 3.32
2621 3348 7.261325 ACAACATAGTTTTGCACAATACAACA 58.739 30.769 6.71 0.00 0.00 3.33
2622 3349 7.925483 ACAACATAGTTTTGCACAATACAACAT 59.075 29.630 6.71 0.00 0.00 2.71
2623 3350 9.404348 CAACATAGTTTTGCACAATACAACATA 57.596 29.630 6.71 0.00 0.00 2.29
2624 3351 9.624697 AACATAGTTTTGCACAATACAACATAG 57.375 29.630 6.71 0.00 0.00 2.23
2625 3352 8.792633 ACATAGTTTTGCACAATACAACATAGT 58.207 29.630 6.71 0.00 0.00 2.12
2626 3353 9.624697 CATAGTTTTGCACAATACAACATAGTT 57.375 29.630 6.71 0.00 0.00 2.24
2628 3355 8.574196 AGTTTTGCACAATACAACATAGTTTC 57.426 30.769 6.71 0.00 0.00 2.78
2629 3356 7.378461 AGTTTTGCACAATACAACATAGTTTCG 59.622 33.333 6.71 0.00 0.00 3.46
2630 3357 6.546972 TTGCACAATACAACATAGTTTCGA 57.453 33.333 0.00 0.00 0.00 3.71
2631 3358 6.546972 TGCACAATACAACATAGTTTCGAA 57.453 33.333 0.00 0.00 0.00 3.71
2632 3359 6.367421 TGCACAATACAACATAGTTTCGAAC 58.633 36.000 0.00 0.00 0.00 3.95
2633 3360 6.017852 TGCACAATACAACATAGTTTCGAACA 60.018 34.615 0.00 0.00 0.00 3.18
2634 3361 6.853872 GCACAATACAACATAGTTTCGAACAA 59.146 34.615 0.00 0.00 0.00 2.83
2635 3362 7.377397 GCACAATACAACATAGTTTCGAACAAA 59.623 33.333 0.00 0.00 0.00 2.83
2636 3363 8.678510 CACAATACAACATAGTTTCGAACAAAC 58.321 33.333 0.00 0.00 0.00 2.93
2637 3364 8.399425 ACAATACAACATAGTTTCGAACAAACA 58.601 29.630 0.00 0.00 32.81 2.83
2638 3365 9.227490 CAATACAACATAGTTTCGAACAAACAA 57.773 29.630 0.00 0.00 32.81 2.83
2639 3366 9.790389 AATACAACATAGTTTCGAACAAACAAA 57.210 25.926 0.00 0.00 32.81 2.83
2640 3367 9.959749 ATACAACATAGTTTCGAACAAACAAAT 57.040 25.926 0.00 0.00 32.81 2.32
2642 3369 9.790389 ACAACATAGTTTCGAACAAACAAATAA 57.210 25.926 0.00 0.00 32.81 1.40
2649 3376 9.965824 AGTTTCGAACAAACAAATAATGAATCT 57.034 25.926 0.00 0.00 32.81 2.40
2653 3380 9.502145 TCGAACAAACAAATAATGAATCTATGC 57.498 29.630 0.00 0.00 0.00 3.14
2654 3381 8.463709 CGAACAAACAAATAATGAATCTATGCG 58.536 33.333 0.00 0.00 0.00 4.73
2655 3382 8.633075 AACAAACAAATAATGAATCTATGCGG 57.367 30.769 0.00 0.00 0.00 5.69
2656 3383 7.995289 ACAAACAAATAATGAATCTATGCGGA 58.005 30.769 0.00 0.00 0.00 5.54
2657 3384 8.632679 ACAAACAAATAATGAATCTATGCGGAT 58.367 29.630 0.00 0.00 0.00 4.18
2658 3385 9.121517 CAAACAAATAATGAATCTATGCGGATC 57.878 33.333 0.00 0.00 0.00 3.36
2659 3386 8.627208 AACAAATAATGAATCTATGCGGATCT 57.373 30.769 0.00 0.00 0.00 2.75
2660 3387 8.627208 ACAAATAATGAATCTATGCGGATCTT 57.373 30.769 0.00 0.00 0.00 2.40
2661 3388 9.071276 ACAAATAATGAATCTATGCGGATCTTT 57.929 29.630 0.00 0.00 0.00 2.52
2662 3389 9.552114 CAAATAATGAATCTATGCGGATCTTTC 57.448 33.333 0.00 0.00 0.00 2.62
2663 3390 5.852738 AATGAATCTATGCGGATCTTTCG 57.147 39.130 0.00 0.00 0.00 3.46
2669 3396 2.329339 GCGGATCTTTCGCCATGC 59.671 61.111 3.75 0.00 46.55 4.06
2670 3397 3.025619 CGGATCTTTCGCCATGCC 58.974 61.111 0.00 0.00 0.00 4.40
2671 3398 1.819208 CGGATCTTTCGCCATGCCA 60.819 57.895 0.00 0.00 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.830736 TGAATACTCGTGTGTGATGATTTTG 58.169 36.000 0.00 0.00 0.00 2.44
50 51 5.164061 GCAAATTGTTTGTAATGCCTTCGAG 60.164 40.000 4.56 0.00 42.56 4.04
57 58 6.446659 ACTTACGCAAATTGTTTGTAATGC 57.553 33.333 4.56 0.00 42.56 3.56
61 62 8.068977 ACGATTTACTTACGCAAATTGTTTGTA 58.931 29.630 4.56 0.00 42.56 2.41
98 99 7.003648 CGATTCAAATAGTATATGTGTGTGCG 58.996 38.462 0.00 0.00 0.00 5.34
106 107 7.105494 ACACGCACGATTCAAATAGTATATG 57.895 36.000 0.00 0.00 0.00 1.78
123 124 3.794564 TGATATGTCGTCATAACACGCAC 59.205 43.478 6.46 0.00 39.55 5.34
180 181 3.454371 AGACCGTGTGTGATATAAGGC 57.546 47.619 0.00 0.00 0.00 4.35
297 298 3.498018 TCACACACCATTTGATCGAACTG 59.502 43.478 0.00 0.00 0.00 3.16
298 299 3.738982 TCACACACCATTTGATCGAACT 58.261 40.909 0.00 0.00 0.00 3.01
299 300 4.685169 ATCACACACCATTTGATCGAAC 57.315 40.909 0.00 0.00 0.00 3.95
300 301 5.729510 TCTATCACACACCATTTGATCGAA 58.270 37.500 0.00 0.00 32.24 3.71
301 302 5.337578 TCTATCACACACCATTTGATCGA 57.662 39.130 0.00 0.00 32.24 3.59
302 303 5.525012 ACATCTATCACACACCATTTGATCG 59.475 40.000 0.00 0.00 32.24 3.69
303 304 6.317140 ACACATCTATCACACACCATTTGATC 59.683 38.462 0.00 0.00 32.24 2.92
304 305 6.182627 ACACATCTATCACACACCATTTGAT 58.817 36.000 0.00 0.00 34.36 2.57
305 306 5.559770 ACACATCTATCACACACCATTTGA 58.440 37.500 0.00 0.00 0.00 2.69
306 307 5.446340 CGACACATCTATCACACACCATTTG 60.446 44.000 0.00 0.00 0.00 2.32
307 308 4.631377 CGACACATCTATCACACACCATTT 59.369 41.667 0.00 0.00 0.00 2.32
308 309 4.183865 CGACACATCTATCACACACCATT 58.816 43.478 0.00 0.00 0.00 3.16
309 310 3.195610 ACGACACATCTATCACACACCAT 59.804 43.478 0.00 0.00 0.00 3.55
310 311 2.560981 ACGACACATCTATCACACACCA 59.439 45.455 0.00 0.00 0.00 4.17
311 312 3.119459 AGACGACACATCTATCACACACC 60.119 47.826 0.00 0.00 0.00 4.16
312 313 4.098055 AGACGACACATCTATCACACAC 57.902 45.455 0.00 0.00 0.00 3.82
313 314 4.485163 CAAGACGACACATCTATCACACA 58.515 43.478 0.00 0.00 0.00 3.72
314 315 3.859961 CCAAGACGACACATCTATCACAC 59.140 47.826 0.00 0.00 0.00 3.82
346 347 5.149273 CCAATTATGTGCGATCACTATTGC 58.851 41.667 0.00 0.00 43.49 3.56
349 350 5.470098 GGAACCAATTATGTGCGATCACTAT 59.530 40.000 0.00 0.00 43.49 2.12
361 362 5.890424 ACGGTTGTTAGGAACCAATTATG 57.110 39.130 0.00 0.00 45.08 1.90
375 376 1.135228 GTTGAGTGGCAAACGGTTGTT 60.135 47.619 15.84 0.00 38.44 2.83
401 402 4.025401 GTTCCGCCACACAAGCCG 62.025 66.667 0.00 0.00 0.00 5.52
441 447 3.351740 TCTGTTGGAAGAACTGTTTGCA 58.648 40.909 0.00 0.00 0.00 4.08
446 452 6.268847 AGTTCTATCTCTGTTGGAAGAACTGT 59.731 38.462 13.17 0.00 46.85 3.55
455 461 3.681897 GCACACAGTTCTATCTCTGTTGG 59.318 47.826 0.00 0.00 42.05 3.77
463 469 6.159988 GTGATATAGGGCACACAGTTCTATC 58.840 44.000 0.00 0.00 35.19 2.08
465 471 4.959839 TGTGATATAGGGCACACAGTTCTA 59.040 41.667 0.00 0.00 39.86 2.10
493 499 6.371271 TCAATCGTGCACAATTTGAGAAGATA 59.629 34.615 18.64 0.00 0.00 1.98
513 519 4.137543 ACTTTTCCTATGGCCGATCAATC 58.862 43.478 0.00 0.00 0.00 2.67
567 574 3.676172 TGCGATGTAGAAACCGTAAACAG 59.324 43.478 0.00 0.00 0.00 3.16
597 604 4.396166 CACCTATCACACATCTTTGAACCC 59.604 45.833 0.00 0.00 0.00 4.11
598 605 5.003804 ACACCTATCACACATCTTTGAACC 58.996 41.667 0.00 0.00 0.00 3.62
625 632 0.383860 GTGCAAAACCGTGCTACGAC 60.384 55.000 9.75 0.00 46.05 4.34
628 643 2.096417 CACTAGTGCAAAACCGTGCTAC 60.096 50.000 10.54 0.00 45.17 3.58
635 650 2.271944 AGGGACACTAGTGCAAAACC 57.728 50.000 22.90 16.29 37.91 3.27
653 668 9.846248 CCTTCATCCTAAAAGACATTGTTTAAG 57.154 33.333 0.00 0.00 0.00 1.85
660 675 6.072199 AGCTCCTTCATCCTAAAAGACATT 57.928 37.500 0.00 0.00 0.00 2.71
661 676 5.707066 AGCTCCTTCATCCTAAAAGACAT 57.293 39.130 0.00 0.00 0.00 3.06
662 677 6.814954 ATAGCTCCTTCATCCTAAAAGACA 57.185 37.500 0.00 0.00 0.00 3.41
663 678 7.658167 GGTAATAGCTCCTTCATCCTAAAAGAC 59.342 40.741 0.00 0.00 0.00 3.01
665 680 6.937465 GGGTAATAGCTCCTTCATCCTAAAAG 59.063 42.308 0.00 0.00 0.00 2.27
666 681 6.388689 TGGGTAATAGCTCCTTCATCCTAAAA 59.611 38.462 0.00 0.00 0.00 1.52
667 682 5.908831 TGGGTAATAGCTCCTTCATCCTAAA 59.091 40.000 0.00 0.00 0.00 1.85
668 683 5.473273 TGGGTAATAGCTCCTTCATCCTAA 58.527 41.667 0.00 0.00 0.00 2.69
671 686 4.534103 AGATGGGTAATAGCTCCTTCATCC 59.466 45.833 0.00 0.00 32.61 3.51
672 687 5.753721 AGATGGGTAATAGCTCCTTCATC 57.246 43.478 0.00 0.00 0.00 2.92
673 688 7.633018 TTAAGATGGGTAATAGCTCCTTCAT 57.367 36.000 0.00 0.00 0.00 2.57
932 1347 3.102972 AGTGTGTGAGTCTGGCTATCAT 58.897 45.455 0.00 0.00 0.00 2.45
1093 1508 3.302344 GCCACCATTGTTGCCCGT 61.302 61.111 0.00 0.00 0.00 5.28
1720 2331 0.741915 GGACGTGACCTCTCTCATCC 59.258 60.000 0.00 0.00 0.00 3.51
1755 2366 1.017701 TGCATGCACTTCGCTGAGAG 61.018 55.000 18.46 0.00 43.06 3.20
1824 2437 5.837703 GCTACGACTCAAAAGTTTACGAAAC 59.162 40.000 0.00 0.00 41.69 2.78
1879 2494 0.887247 CAAACGGCCACATTCCATCA 59.113 50.000 2.24 0.00 0.00 3.07
1911 2526 9.751542 AATTAGGAAGAGATAATGTAACGACAG 57.248 33.333 0.00 0.00 39.50 3.51
2113 2757 8.997621 ACTATTAAAACGATGTGACACTGTAT 57.002 30.769 7.20 0.00 0.00 2.29
2114 2758 8.821147 AACTATTAAAACGATGTGACACTGTA 57.179 30.769 7.20 0.00 0.00 2.74
2116 2760 8.705134 TGTAACTATTAAAACGATGTGACACTG 58.295 33.333 7.20 0.00 0.00 3.66
2117 2761 8.821147 TGTAACTATTAAAACGATGTGACACT 57.179 30.769 7.20 0.00 0.00 3.55
2118 2762 9.525007 CTTGTAACTATTAAAACGATGTGACAC 57.475 33.333 0.00 0.00 0.00 3.67
2161 2888 5.163364 CCTCTTCCACTGCAGTATGATAAGT 60.163 44.000 21.20 0.00 39.69 2.24
2173 2900 1.406205 GCCTAAGACCTCTTCCACTGC 60.406 57.143 0.00 0.00 37.40 4.40
2279 3006 9.258629 TCAAAATTTGGACCATCTATTGAAGAT 57.741 29.630 5.83 0.00 46.36 2.40
2280 3007 8.522830 GTCAAAATTTGGACCATCTATTGAAGA 58.477 33.333 13.94 3.82 39.02 2.87
2281 3008 7.485913 CGTCAAAATTTGGACCATCTATTGAAG 59.514 37.037 18.17 11.09 0.00 3.02
2282 3009 7.312154 CGTCAAAATTTGGACCATCTATTGAA 58.688 34.615 18.17 0.00 0.00 2.69
2283 3010 6.127758 CCGTCAAAATTTGGACCATCTATTGA 60.128 38.462 18.17 2.22 0.00 2.57
2284 3011 6.035843 CCGTCAAAATTTGGACCATCTATTG 58.964 40.000 18.17 3.64 0.00 1.90
2285 3012 5.714806 ACCGTCAAAATTTGGACCATCTATT 59.285 36.000 18.17 0.00 0.00 1.73
2286 3013 5.261216 ACCGTCAAAATTTGGACCATCTAT 58.739 37.500 18.17 0.00 0.00 1.98
2287 3014 4.658063 ACCGTCAAAATTTGGACCATCTA 58.342 39.130 18.17 0.00 0.00 1.98
2288 3015 3.496331 ACCGTCAAAATTTGGACCATCT 58.504 40.909 18.17 0.00 0.00 2.90
2289 3016 3.366985 GGACCGTCAAAATTTGGACCATC 60.367 47.826 18.17 15.03 36.50 3.51
2290 3017 2.560981 GGACCGTCAAAATTTGGACCAT 59.439 45.455 18.17 7.90 36.50 3.55
2291 3018 1.957877 GGACCGTCAAAATTTGGACCA 59.042 47.619 18.17 0.00 36.50 4.02
2292 3019 1.957877 TGGACCGTCAAAATTTGGACC 59.042 47.619 18.17 12.12 36.93 4.46
2293 3020 3.719173 TTGGACCGTCAAAATTTGGAC 57.281 42.857 14.77 14.77 0.00 4.02
2294 3021 4.434520 GTTTTGGACCGTCAAAATTTGGA 58.565 39.130 5.83 0.00 44.90 3.53
2295 3022 3.558006 GGTTTTGGACCGTCAAAATTTGG 59.442 43.478 5.83 0.00 44.90 3.28
2296 3023 4.787381 GGTTTTGGACCGTCAAAATTTG 57.213 40.909 1.80 0.00 44.90 2.32
2307 3034 5.638596 ATTAACATCTTCGGTTTTGGACC 57.361 39.130 0.00 0.00 45.55 4.46
2308 3035 7.783209 CAAAATTAACATCTTCGGTTTTGGAC 58.217 34.615 0.00 0.00 33.68 4.02
2309 3036 7.938563 CAAAATTAACATCTTCGGTTTTGGA 57.061 32.000 0.00 0.00 33.68 3.53
2310 3037 7.116061 CCAAAATTAACATCTTCGGTTTTGG 57.884 36.000 11.00 11.00 44.06 3.28
2311 3038 7.095816 GGTCCAAAATTAACATCTTCGGTTTTG 60.096 37.037 0.00 0.00 35.79 2.44
2312 3039 6.926826 GGTCCAAAATTAACATCTTCGGTTTT 59.073 34.615 0.00 0.00 0.00 2.43
2313 3040 6.452242 GGTCCAAAATTAACATCTTCGGTTT 58.548 36.000 0.00 0.00 0.00 3.27
2314 3041 5.335348 CGGTCCAAAATTAACATCTTCGGTT 60.335 40.000 0.00 0.00 0.00 4.44
2315 3042 4.155280 CGGTCCAAAATTAACATCTTCGGT 59.845 41.667 0.00 0.00 0.00 4.69
2316 3043 4.658071 CGGTCCAAAATTAACATCTTCGG 58.342 43.478 0.00 0.00 0.00 4.30
2317 3044 4.095610 GCGGTCCAAAATTAACATCTTCG 58.904 43.478 0.00 0.00 0.00 3.79
2318 3045 4.082463 TGGCGGTCCAAAATTAACATCTTC 60.082 41.667 0.00 0.00 39.99 2.87
2319 3046 3.829601 TGGCGGTCCAAAATTAACATCTT 59.170 39.130 0.00 0.00 39.99 2.40
2320 3047 3.426615 TGGCGGTCCAAAATTAACATCT 58.573 40.909 0.00 0.00 39.99 2.90
2321 3048 3.859411 TGGCGGTCCAAAATTAACATC 57.141 42.857 0.00 0.00 39.99 3.06
2342 3069 1.335872 CGGAGCTCCAAACGCATTTTT 60.336 47.619 31.67 0.00 35.14 1.94
2343 3070 0.240945 CGGAGCTCCAAACGCATTTT 59.759 50.000 31.67 0.00 35.14 1.82
2344 3071 0.605319 TCGGAGCTCCAAACGCATTT 60.605 50.000 31.67 0.00 35.14 2.32
2345 3072 0.605319 TTCGGAGCTCCAAACGCATT 60.605 50.000 31.67 0.00 35.14 3.56
2346 3073 0.605319 TTTCGGAGCTCCAAACGCAT 60.605 50.000 31.67 0.00 35.14 4.73
2347 3074 0.816018 TTTTCGGAGCTCCAAACGCA 60.816 50.000 31.67 13.27 35.14 5.24
2348 3075 0.309612 TTTTTCGGAGCTCCAAACGC 59.690 50.000 31.67 4.38 35.14 4.84
2364 3091 5.665916 CATCTATTGGAGTTGGCCTTTTT 57.334 39.130 3.32 0.00 0.00 1.94
2378 3105 7.231925 TGGATCATGAATTTGGACCATCTATTG 59.768 37.037 0.00 0.00 0.00 1.90
2379 3106 7.299896 TGGATCATGAATTTGGACCATCTATT 58.700 34.615 0.00 0.00 0.00 1.73
2380 3107 6.855667 TGGATCATGAATTTGGACCATCTAT 58.144 36.000 0.00 0.00 0.00 1.98
2381 3108 6.264771 TGGATCATGAATTTGGACCATCTA 57.735 37.500 0.00 0.00 0.00 1.98
2382 3109 5.133383 TGGATCATGAATTTGGACCATCT 57.867 39.130 0.00 0.00 0.00 2.90
2383 3110 5.857471 TTGGATCATGAATTTGGACCATC 57.143 39.130 0.00 0.00 0.00 3.51
2384 3111 6.441284 TCTTTTGGATCATGAATTTGGACCAT 59.559 34.615 0.00 0.00 0.00 3.55
2385 3112 5.779260 TCTTTTGGATCATGAATTTGGACCA 59.221 36.000 0.00 0.00 0.00 4.02
2386 3113 6.284891 TCTTTTGGATCATGAATTTGGACC 57.715 37.500 0.00 0.00 0.00 4.46
2387 3114 5.809051 GCTCTTTTGGATCATGAATTTGGAC 59.191 40.000 0.00 0.00 0.00 4.02
2388 3115 5.481122 TGCTCTTTTGGATCATGAATTTGGA 59.519 36.000 0.00 0.00 0.00 3.53
2389 3116 5.726397 TGCTCTTTTGGATCATGAATTTGG 58.274 37.500 0.00 0.00 0.00 3.28
2390 3117 6.872020 AGTTGCTCTTTTGGATCATGAATTTG 59.128 34.615 0.00 0.00 0.00 2.32
2391 3118 7.001099 AGTTGCTCTTTTGGATCATGAATTT 57.999 32.000 0.00 0.00 0.00 1.82
2392 3119 6.350780 GGAGTTGCTCTTTTGGATCATGAATT 60.351 38.462 0.00 0.00 0.00 2.17
2393 3120 5.126707 GGAGTTGCTCTTTTGGATCATGAAT 59.873 40.000 0.00 0.00 0.00 2.57
2394 3121 4.460382 GGAGTTGCTCTTTTGGATCATGAA 59.540 41.667 0.00 0.00 0.00 2.57
2395 3122 4.012374 GGAGTTGCTCTTTTGGATCATGA 58.988 43.478 0.00 0.00 0.00 3.07
2396 3123 3.760151 TGGAGTTGCTCTTTTGGATCATG 59.240 43.478 0.00 0.00 0.00 3.07
2397 3124 4.038271 TGGAGTTGCTCTTTTGGATCAT 57.962 40.909 0.00 0.00 0.00 2.45
2398 3125 3.507162 TGGAGTTGCTCTTTTGGATCA 57.493 42.857 0.00 0.00 0.00 2.92
2399 3126 5.067023 CCTATTGGAGTTGCTCTTTTGGATC 59.933 44.000 0.00 0.00 34.57 3.36
2400 3127 4.952335 CCTATTGGAGTTGCTCTTTTGGAT 59.048 41.667 0.00 0.00 34.57 3.41
2401 3128 4.202567 ACCTATTGGAGTTGCTCTTTTGGA 60.203 41.667 0.00 0.00 37.04 3.53
2402 3129 4.082125 ACCTATTGGAGTTGCTCTTTTGG 58.918 43.478 0.00 0.00 37.04 3.28
2403 3130 5.940470 ACTACCTATTGGAGTTGCTCTTTTG 59.060 40.000 0.00 0.00 37.04 2.44
2404 3131 6.128138 ACTACCTATTGGAGTTGCTCTTTT 57.872 37.500 0.00 0.00 37.04 2.27
2405 3132 5.338463 GGACTACCTATTGGAGTTGCTCTTT 60.338 44.000 0.00 0.00 37.04 2.52
2406 3133 4.162509 GGACTACCTATTGGAGTTGCTCTT 59.837 45.833 0.00 0.00 37.04 2.85
2407 3134 3.707102 GGACTACCTATTGGAGTTGCTCT 59.293 47.826 0.00 0.00 37.04 4.09
2408 3135 3.451178 TGGACTACCTATTGGAGTTGCTC 59.549 47.826 0.00 0.00 37.04 4.26
2409 3136 3.450904 TGGACTACCTATTGGAGTTGCT 58.549 45.455 0.00 0.00 37.04 3.91
2410 3137 3.906720 TGGACTACCTATTGGAGTTGC 57.093 47.619 0.00 0.00 37.04 4.17
2411 3138 6.884295 TGAATTTGGACTACCTATTGGAGTTG 59.116 38.462 0.00 0.00 37.04 3.16
2412 3139 7.027874 TGAATTTGGACTACCTATTGGAGTT 57.972 36.000 0.00 0.00 37.04 3.01
2413 3140 6.636454 TGAATTTGGACTACCTATTGGAGT 57.364 37.500 0.00 0.00 37.04 3.85
2414 3141 6.488006 CCATGAATTTGGACTACCTATTGGAG 59.512 42.308 0.00 0.00 39.25 3.86
2415 3142 6.069088 ACCATGAATTTGGACTACCTATTGGA 60.069 38.462 3.10 0.00 39.25 3.53
2416 3143 6.129179 ACCATGAATTTGGACTACCTATTGG 58.871 40.000 3.10 0.00 39.25 3.16
2417 3144 6.263168 GGACCATGAATTTGGACTACCTATTG 59.737 42.308 3.10 0.00 39.25 1.90
2418 3145 6.069088 TGGACCATGAATTTGGACTACCTATT 60.069 38.462 3.10 0.00 39.25 1.73
2419 3146 5.431731 TGGACCATGAATTTGGACTACCTAT 59.568 40.000 3.10 0.00 39.25 2.57
2420 3147 4.785914 TGGACCATGAATTTGGACTACCTA 59.214 41.667 3.10 0.00 39.25 3.08
2421 3148 3.591527 TGGACCATGAATTTGGACTACCT 59.408 43.478 3.10 0.00 39.25 3.08
2422 3149 3.963129 TGGACCATGAATTTGGACTACC 58.037 45.455 3.10 2.54 39.25 3.18
2423 3150 5.975693 TTTGGACCATGAATTTGGACTAC 57.024 39.130 3.10 0.00 39.25 2.73
2424 3151 6.339587 GTTTTGGACCATGAATTTGGACTA 57.660 37.500 3.10 0.00 39.25 2.59
2425 3152 5.213891 GTTTTGGACCATGAATTTGGACT 57.786 39.130 3.10 0.00 39.25 3.85
2438 3165 3.680786 GCTGGCCGGTTTTGGACC 61.681 66.667 14.55 0.00 45.55 4.46
2439 3166 2.909965 TGCTGGCCGGTTTTGGAC 60.910 61.111 14.55 0.00 37.64 4.02
2440 3167 2.597217 CTGCTGGCCGGTTTTGGA 60.597 61.111 14.55 0.00 0.00 3.53
2441 3168 4.362476 GCTGCTGGCCGGTTTTGG 62.362 66.667 14.55 0.41 34.27 3.28
2469 3196 1.156645 GCTGGATAGCGGCTGAACAG 61.157 60.000 13.86 17.10 40.67 3.16
2470 3197 1.153369 GCTGGATAGCGGCTGAACA 60.153 57.895 13.86 7.41 40.67 3.18
2471 3198 3.724494 GCTGGATAGCGGCTGAAC 58.276 61.111 13.86 2.68 40.67 3.18
2480 3207 1.202580 GGCTGTACAGTGGCTGGATAG 60.203 57.143 23.44 1.40 36.75 2.08
2481 3208 0.830648 GGCTGTACAGTGGCTGGATA 59.169 55.000 23.44 0.00 35.51 2.59
2482 3209 1.604378 GGCTGTACAGTGGCTGGAT 59.396 57.895 23.44 0.00 35.51 3.41
2483 3210 2.942796 CGGCTGTACAGTGGCTGGA 61.943 63.158 23.44 0.00 35.51 3.86
2484 3211 2.434884 CGGCTGTACAGTGGCTGG 60.435 66.667 23.44 4.16 35.51 4.85
2485 3212 3.121030 GCGGCTGTACAGTGGCTG 61.121 66.667 23.44 16.08 37.52 4.85
2486 3213 3.625897 TGCGGCTGTACAGTGGCT 61.626 61.111 28.30 0.00 32.57 4.75
2487 3214 3.423154 GTGCGGCTGTACAGTGGC 61.423 66.667 23.44 24.03 0.00 5.01
2488 3215 0.108377 TATGTGCGGCTGTACAGTGG 60.108 55.000 23.44 16.11 44.11 4.00
2489 3216 1.939974 ATATGTGCGGCTGTACAGTG 58.060 50.000 23.44 16.97 44.11 3.66
2490 3217 2.691409 AATATGTGCGGCTGTACAGT 57.309 45.000 23.44 10.19 44.11 3.55
2491 3218 2.935849 TGAAATATGTGCGGCTGTACAG 59.064 45.455 21.27 18.93 44.11 2.74
2492 3219 2.979240 TGAAATATGTGCGGCTGTACA 58.021 42.857 19.17 19.17 44.99 2.90
2493 3220 4.349663 TTTGAAATATGTGCGGCTGTAC 57.650 40.909 6.84 6.84 0.00 2.90
2494 3221 5.574891 ATTTTGAAATATGTGCGGCTGTA 57.425 34.783 0.00 0.00 0.00 2.74
2495 3222 3.932545 TTTTGAAATATGTGCGGCTGT 57.067 38.095 0.00 0.00 0.00 4.40
2496 3223 5.804473 TGTTATTTTGAAATATGTGCGGCTG 59.196 36.000 0.00 0.00 31.47 4.85
2497 3224 5.960113 TGTTATTTTGAAATATGTGCGGCT 58.040 33.333 0.00 0.00 31.47 5.52
2498 3225 6.826893 ATGTTATTTTGAAATATGTGCGGC 57.173 33.333 0.00 0.00 31.47 6.53
2525 3252 9.487790 AATTTGATATTGTGGACGTGAATTTTT 57.512 25.926 0.00 0.00 0.00 1.94
2531 3258 9.384764 TGTAATAATTTGATATTGTGGACGTGA 57.615 29.630 0.00 0.00 0.00 4.35
2554 3281 9.605275 CATTTTCTGGATCTGAAGAACTATGTA 57.395 33.333 5.80 0.00 32.26 2.29
2555 3282 7.066766 GCATTTTCTGGATCTGAAGAACTATGT 59.933 37.037 17.22 0.00 32.26 2.29
2556 3283 7.066645 TGCATTTTCTGGATCTGAAGAACTATG 59.933 37.037 14.75 14.75 32.26 2.23
2557 3284 7.114754 TGCATTTTCTGGATCTGAAGAACTAT 58.885 34.615 5.80 2.14 32.26 2.12
2558 3285 6.475504 TGCATTTTCTGGATCTGAAGAACTA 58.524 36.000 5.80 0.38 32.26 2.24
2559 3286 5.319453 TGCATTTTCTGGATCTGAAGAACT 58.681 37.500 5.80 0.00 32.26 3.01
2560 3287 5.633830 TGCATTTTCTGGATCTGAAGAAC 57.366 39.130 5.80 0.00 32.26 3.01
2561 3288 6.627243 CATTGCATTTTCTGGATCTGAAGAA 58.373 36.000 0.00 0.00 0.00 2.52
2562 3289 5.393787 GCATTGCATTTTCTGGATCTGAAGA 60.394 40.000 3.15 0.00 0.00 2.87
2563 3290 4.804139 GCATTGCATTTTCTGGATCTGAAG 59.196 41.667 3.15 0.00 0.00 3.02
2564 3291 4.221041 TGCATTGCATTTTCTGGATCTGAA 59.779 37.500 7.38 0.00 31.71 3.02
2565 3292 3.764972 TGCATTGCATTTTCTGGATCTGA 59.235 39.130 7.38 0.00 31.71 3.27
2566 3293 4.118093 TGCATTGCATTTTCTGGATCTG 57.882 40.909 7.38 0.00 31.71 2.90
2567 3294 4.020928 TGTTGCATTGCATTTTCTGGATCT 60.021 37.500 12.95 0.00 38.76 2.75
2568 3295 4.092383 GTGTTGCATTGCATTTTCTGGATC 59.908 41.667 12.95 0.00 38.76 3.36
2569 3296 3.998341 GTGTTGCATTGCATTTTCTGGAT 59.002 39.130 12.95 0.00 38.76 3.41
2570 3297 3.181468 TGTGTTGCATTGCATTTTCTGGA 60.181 39.130 12.95 0.00 38.76 3.86
2571 3298 3.132160 TGTGTTGCATTGCATTTTCTGG 58.868 40.909 12.95 0.00 38.76 3.86
2572 3299 4.797693 TTGTGTTGCATTGCATTTTCTG 57.202 36.364 12.95 0.00 38.76 3.02
2573 3300 6.482641 TGTATTTGTGTTGCATTGCATTTTCT 59.517 30.769 12.95 0.00 38.76 2.52
2574 3301 6.656945 TGTATTTGTGTTGCATTGCATTTTC 58.343 32.000 12.95 4.67 38.76 2.29
2575 3302 6.615264 TGTATTTGTGTTGCATTGCATTTT 57.385 29.167 12.95 0.00 38.76 1.82
2576 3303 6.037940 TGTTGTATTTGTGTTGCATTGCATTT 59.962 30.769 12.95 0.00 38.76 2.32
2577 3304 5.526479 TGTTGTATTTGTGTTGCATTGCATT 59.474 32.000 12.95 0.00 38.76 3.56
2578 3305 5.055144 TGTTGTATTTGTGTTGCATTGCAT 58.945 33.333 12.95 0.00 38.76 3.96
2579 3306 4.436332 TGTTGTATTTGTGTTGCATTGCA 58.564 34.783 7.38 7.38 36.47 4.08
2580 3307 5.594724 ATGTTGTATTTGTGTTGCATTGC 57.405 34.783 0.46 0.46 0.00 3.56
2581 3308 7.872163 ACTATGTTGTATTTGTGTTGCATTG 57.128 32.000 0.00 0.00 0.00 2.82
2582 3309 8.885494 AAACTATGTTGTATTTGTGTTGCATT 57.115 26.923 0.00 0.00 0.00 3.56
2583 3310 8.763356 CAAAACTATGTTGTATTTGTGTTGCAT 58.237 29.630 0.00 0.00 0.00 3.96
2584 3311 7.254252 GCAAAACTATGTTGTATTTGTGTTGCA 60.254 33.333 12.21 0.00 43.81 4.08
2585 3312 7.062848 GCAAAACTATGTTGTATTTGTGTTGC 58.937 34.615 0.00 0.00 40.06 4.17
2586 3313 8.055402 GTGCAAAACTATGTTGTATTTGTGTTG 58.945 33.333 0.00 0.00 34.37 3.33
2587 3314 7.761704 TGTGCAAAACTATGTTGTATTTGTGTT 59.238 29.630 0.00 0.00 34.37 3.32
2588 3315 7.261325 TGTGCAAAACTATGTTGTATTTGTGT 58.739 30.769 0.00 0.00 34.37 3.72
2589 3316 7.691430 TGTGCAAAACTATGTTGTATTTGTG 57.309 32.000 0.00 0.00 34.37 3.33
2590 3317 8.885494 ATTGTGCAAAACTATGTTGTATTTGT 57.115 26.923 0.00 0.00 34.37 2.83
2592 3319 9.973450 TGTATTGTGCAAAACTATGTTGTATTT 57.027 25.926 0.00 0.00 0.00 1.40
2593 3320 9.973450 TTGTATTGTGCAAAACTATGTTGTATT 57.027 25.926 0.00 0.00 0.00 1.89
2594 3321 9.405587 GTTGTATTGTGCAAAACTATGTTGTAT 57.594 29.630 0.00 0.00 0.00 2.29
2595 3322 8.406297 TGTTGTATTGTGCAAAACTATGTTGTA 58.594 29.630 0.00 0.00 0.00 2.41
2596 3323 7.261325 TGTTGTATTGTGCAAAACTATGTTGT 58.739 30.769 0.00 0.00 0.00 3.32
2597 3324 7.691430 TGTTGTATTGTGCAAAACTATGTTG 57.309 32.000 0.00 0.00 0.00 3.33
2598 3325 9.624697 CTATGTTGTATTGTGCAAAACTATGTT 57.375 29.630 0.00 0.00 0.00 2.71
2599 3326 8.792633 ACTATGTTGTATTGTGCAAAACTATGT 58.207 29.630 0.00 0.00 0.00 2.29
2600 3327 9.624697 AACTATGTTGTATTGTGCAAAACTATG 57.375 29.630 0.00 0.00 0.00 2.23
2602 3329 9.672086 GAAACTATGTTGTATTGTGCAAAACTA 57.328 29.630 0.00 0.00 0.00 2.24
2603 3330 7.378461 CGAAACTATGTTGTATTGTGCAAAACT 59.622 33.333 0.00 0.00 0.00 2.66
2604 3331 7.377397 TCGAAACTATGTTGTATTGTGCAAAAC 59.623 33.333 0.00 0.00 0.00 2.43
2605 3332 7.418408 TCGAAACTATGTTGTATTGTGCAAAA 58.582 30.769 0.00 0.00 0.00 2.44
2606 3333 6.960468 TCGAAACTATGTTGTATTGTGCAAA 58.040 32.000 0.00 0.00 0.00 3.68
2607 3334 6.546972 TCGAAACTATGTTGTATTGTGCAA 57.453 33.333 0.00 0.00 0.00 4.08
2608 3335 6.017852 TGTTCGAAACTATGTTGTATTGTGCA 60.018 34.615 0.00 0.00 0.00 4.57
2609 3336 6.367421 TGTTCGAAACTATGTTGTATTGTGC 58.633 36.000 0.00 0.00 0.00 4.57
2610 3337 8.678510 GTTTGTTCGAAACTATGTTGTATTGTG 58.321 33.333 0.00 0.00 0.00 3.33
2611 3338 8.399425 TGTTTGTTCGAAACTATGTTGTATTGT 58.601 29.630 0.00 0.00 0.00 2.71
2612 3339 8.775220 TGTTTGTTCGAAACTATGTTGTATTG 57.225 30.769 0.00 0.00 0.00 1.90
2613 3340 9.790389 TTTGTTTGTTCGAAACTATGTTGTATT 57.210 25.926 0.00 0.00 0.00 1.89
2614 3341 9.959749 ATTTGTTTGTTCGAAACTATGTTGTAT 57.040 25.926 0.00 0.00 0.00 2.29
2616 3343 9.790389 TTATTTGTTTGTTCGAAACTATGTTGT 57.210 25.926 0.00 0.00 0.00 3.32
2623 3350 9.965824 AGATTCATTATTTGTTTGTTCGAAACT 57.034 25.926 0.00 0.00 0.00 2.66
2627 3354 9.502145 GCATAGATTCATTATTTGTTTGTTCGA 57.498 29.630 0.00 0.00 0.00 3.71
2628 3355 8.463709 CGCATAGATTCATTATTTGTTTGTTCG 58.536 33.333 0.00 0.00 0.00 3.95
2629 3356 8.745837 CCGCATAGATTCATTATTTGTTTGTTC 58.254 33.333 0.00 0.00 0.00 3.18
2630 3357 8.465999 TCCGCATAGATTCATTATTTGTTTGTT 58.534 29.630 0.00 0.00 0.00 2.83
2631 3358 7.995289 TCCGCATAGATTCATTATTTGTTTGT 58.005 30.769 0.00 0.00 0.00 2.83
2632 3359 9.121517 GATCCGCATAGATTCATTATTTGTTTG 57.878 33.333 0.00 0.00 0.00 2.93
2633 3360 9.071276 AGATCCGCATAGATTCATTATTTGTTT 57.929 29.630 0.00 0.00 0.00 2.83
2634 3361 8.627208 AGATCCGCATAGATTCATTATTTGTT 57.373 30.769 0.00 0.00 0.00 2.83
2635 3362 8.627208 AAGATCCGCATAGATTCATTATTTGT 57.373 30.769 0.00 0.00 0.00 2.83
2636 3363 9.552114 GAAAGATCCGCATAGATTCATTATTTG 57.448 33.333 0.00 0.00 0.00 2.32
2637 3364 8.446273 CGAAAGATCCGCATAGATTCATTATTT 58.554 33.333 0.00 0.00 0.00 1.40
2638 3365 7.968246 CGAAAGATCCGCATAGATTCATTATT 58.032 34.615 0.00 0.00 0.00 1.40
2639 3366 7.531280 CGAAAGATCCGCATAGATTCATTAT 57.469 36.000 0.00 0.00 0.00 1.28
2640 3367 6.951256 CGAAAGATCCGCATAGATTCATTA 57.049 37.500 0.00 0.00 0.00 1.90
2641 3368 5.852738 CGAAAGATCCGCATAGATTCATT 57.147 39.130 0.00 0.00 0.00 2.57
2653 3380 1.819208 TGGCATGGCGAAAGATCCG 60.819 57.895 15.27 0.00 0.00 4.18
2654 3381 4.240881 TGGCATGGCGAAAGATCC 57.759 55.556 15.27 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.