Multiple sequence alignment - TraesCS1D01G214200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G214200 chr1D 100.000 4272 0 0 1 4272 299575089 299579360 0.000000e+00 7890.0
1 TraesCS1D01G214200 chr1D 89.690 902 75 8 1126 2026 299584911 299584027 0.000000e+00 1134.0
2 TraesCS1D01G214200 chr1D 89.897 871 73 9 2402 3272 299582448 299581593 0.000000e+00 1107.0
3 TraesCS1D01G214200 chr1D 85.809 303 33 7 192 485 318585626 318585927 3.210000e-81 313.0
4 TraesCS1D01G214200 chr1D 98.601 143 0 2 3502 3643 299578500 299578641 7.090000e-63 252.0
5 TraesCS1D01G214200 chr1D 98.601 143 0 2 3412 3553 299578590 299578731 7.090000e-63 252.0
6 TraesCS1D01G214200 chr1D 100.000 51 0 0 3593 3643 299578500 299578550 1.260000e-15 95.3
7 TraesCS1D01G214200 chr1D 100.000 51 0 0 3412 3462 299578681 299578731 1.260000e-15 95.3
8 TraesCS1D01G214200 chr1D 100.000 30 0 0 3427 3456 299578763 299578792 5.970000e-04 56.5
9 TraesCS1D01G214200 chr1D 100.000 30 0 0 3608 3637 299578763 299578792 5.970000e-04 56.5
10 TraesCS1D01G214200 chr1B 95.142 1791 60 8 485 2263 403540755 403542530 0.000000e+00 2800.0
11 TraesCS1D01G214200 chr1B 92.362 1139 52 21 2371 3505 403542858 403543965 0.000000e+00 1589.0
12 TraesCS1D01G214200 chr1B 90.122 901 69 7 1126 2026 403581960 403581080 0.000000e+00 1153.0
13 TraesCS1D01G214200 chr1B 89.450 891 77 11 2382 3272 403579021 403578148 0.000000e+00 1109.0
14 TraesCS1D01G214200 chr1B 83.713 571 71 15 3711 4272 403543972 403544529 1.760000e-143 520.0
15 TraesCS1D01G214200 chr1B 87.253 455 48 7 1 447 403540301 403540753 1.060000e-140 510.0
16 TraesCS1D01G214200 chr1B 98.039 51 1 0 3593 3643 403543876 403543926 5.880000e-14 89.8
17 TraesCS1D01G214200 chr1A 93.722 1115 49 9 2392 3502 373767654 373768751 0.000000e+00 1652.0
18 TraesCS1D01G214200 chr1A 95.141 885 39 2 1426 2307 373766711 373767594 0.000000e+00 1393.0
19 TraesCS1D01G214200 chr1A 93.742 831 36 8 521 1347 373765893 373766711 0.000000e+00 1232.0
20 TraesCS1D01G214200 chr1A 89.787 891 74 11 2382 3272 373771842 373770969 0.000000e+00 1125.0
21 TraesCS1D01G214200 chr1A 89.456 901 79 6 1126 2026 373774508 373773624 0.000000e+00 1123.0
22 TraesCS1D01G214200 chr5A 81.010 574 99 6 1460 2025 693641971 693641400 8.430000e-122 448.0
23 TraesCS1D01G214200 chr5A 86.711 301 28 9 191 481 647359554 647359852 1.480000e-84 324.0
24 TraesCS1D01G214200 chr5A 84.524 252 39 0 1095 1346 693642241 693641990 2.550000e-62 250.0
25 TraesCS1D01G214200 chrUn 84.767 407 47 8 3799 4192 189402604 189402200 1.110000e-105 394.0
26 TraesCS1D01G214200 chr7D 84.901 404 46 7 3799 4189 203546292 203546693 1.110000e-105 394.0
27 TraesCS1D01G214200 chr7D 78.261 644 103 24 2452 3068 374566039 374565406 3.120000e-101 379.0
28 TraesCS1D01G214200 chr7D 100.000 29 0 0 3760 3788 115092442 115092470 2.000000e-03 54.7
29 TraesCS1D01G214200 chr5D 84.804 408 44 12 3799 4192 324419486 324419083 1.110000e-105 394.0
30 TraesCS1D01G214200 chr5D 87.171 304 27 7 193 486 375170620 375170921 6.840000e-88 335.0
31 TraesCS1D01G214200 chr5D 94.872 39 0 2 3754 3790 111946713 111946751 4.610000e-05 60.2
32 TraesCS1D01G214200 chr7A 78.505 642 105 22 2452 3068 420838386 420837753 1.440000e-104 390.0
33 TraesCS1D01G214200 chr6D 84.521 407 48 10 3799 4192 458908300 458907896 5.180000e-104 388.0
34 TraesCS1D01G214200 chr6A 84.653 404 47 7 3799 4189 597231784 597232185 5.180000e-104 388.0
35 TraesCS1D01G214200 chr2A 84.653 404 47 7 3799 4189 84962538 84962939 5.180000e-104 388.0
36 TraesCS1D01G214200 chr2A 85.304 313 33 9 191 491 434579960 434580271 1.150000e-80 311.0
37 TraesCS1D01G214200 chr6B 83.824 408 50 10 3799 4194 394406161 394405758 1.450000e-99 374.0
38 TraesCS1D01G214200 chr3B 83.498 406 52 9 3799 4194 368696233 368695833 8.730000e-97 364.0
39 TraesCS1D01G214200 chr3B 85.953 299 34 6 191 482 542514203 542514500 3.210000e-81 313.0
40 TraesCS1D01G214200 chr3B 100.000 29 0 0 3762 3790 741438102 741438130 2.000000e-03 54.7
41 TraesCS1D01G214200 chr2B 86.129 310 29 11 189 485 757357511 757357819 5.330000e-84 322.0
42 TraesCS1D01G214200 chr2B 85.809 303 33 7 192 485 727733873 727734174 3.210000e-81 313.0
43 TraesCS1D01G214200 chr2B 92.105 38 3 0 3120 3157 793375513 793375476 2.000000e-03 54.7
44 TraesCS1D01G214200 chr4A 85.621 306 32 9 190 484 615081294 615081598 1.150000e-80 311.0
45 TraesCS1D01G214200 chr4D 84.921 252 38 0 1095 1346 508271778 508271527 5.480000e-64 255.0
46 TraesCS1D01G214200 chr4B 84.496 258 40 0 1089 1346 659569105 659569362 5.480000e-64 255.0
47 TraesCS1D01G214200 chr4B 91.111 45 4 0 3760 3804 139759786 139759830 1.280000e-05 62.1
48 TraesCS1D01G214200 chr7B 83.721 258 42 0 1070 1327 369417018 369416761 1.190000e-60 244.0
49 TraesCS1D01G214200 chr2D 92.105 38 3 0 3120 3157 643745318 643745355 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G214200 chr1D 299575089 299579360 4271 False 1242.514286 7890 99.600286 1 4272 7 chr1D.!!$F2 4271
1 TraesCS1D01G214200 chr1D 299581593 299584911 3318 True 1120.500000 1134 89.793500 1126 3272 2 chr1D.!!$R1 2146
2 TraesCS1D01G214200 chr1B 403578148 403581960 3812 True 1131.000000 1153 89.786000 1126 3272 2 chr1B.!!$R1 2146
3 TraesCS1D01G214200 chr1B 403540301 403544529 4228 False 1101.760000 2800 91.301800 1 4272 5 chr1B.!!$F1 4271
4 TraesCS1D01G214200 chr1A 373765893 373768751 2858 False 1425.666667 1652 94.201667 521 3502 3 chr1A.!!$F1 2981
5 TraesCS1D01G214200 chr1A 373770969 373774508 3539 True 1124.000000 1125 89.621500 1126 3272 2 chr1A.!!$R1 2146
6 TraesCS1D01G214200 chr5A 693641400 693642241 841 True 349.000000 448 82.767000 1095 2025 2 chr5A.!!$R1 930
7 TraesCS1D01G214200 chr7D 374565406 374566039 633 True 379.000000 379 78.261000 2452 3068 1 chr7D.!!$R1 616
8 TraesCS1D01G214200 chr7A 420837753 420838386 633 True 390.000000 390 78.505000 2452 3068 1 chr7A.!!$R1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 620 0.107703 TTTGATAGACGGGCCAGCTG 60.108 55.000 6.78 6.78 0.00 4.24 F
1053 1063 0.106819 GCAAGGGCATCCTCACAGAT 60.107 55.000 0.00 0.00 44.07 2.90 F
1400 1410 1.154338 CAGTTGCACGCTTAGCAGC 60.154 57.895 10.99 10.99 43.75 5.25 F
2689 4885 1.141881 CGGTTCCATCCTCCTCACG 59.858 63.158 0.00 0.00 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2175 2718 2.800544 CAGAGTACGTTTTGGTCCACAG 59.199 50.000 0.00 0.0 0.00 3.66 R
2647 4843 1.985116 GAAGACGGTGAGGGAGCCT 60.985 63.158 0.00 0.0 36.03 4.58 R
2830 5026 2.261671 GACGATGTGAGGCGGTGT 59.738 61.111 0.00 0.0 0.00 4.16 R
3931 6156 0.246635 AAGGTCGACGATCAACCAGG 59.753 55.000 11.33 0.0 35.43 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.972327 ACATCAGGATCTCTTTTCTCCAT 57.028 39.130 0.00 0.00 0.00 3.41
32 33 7.052873 CAGGATCTCTTTTCTCCATGTGTAAT 58.947 38.462 0.00 0.00 0.00 1.89
103 104 1.892209 TCCTTCCTTGAAAGCCGAAC 58.108 50.000 0.00 0.00 0.00 3.95
116 117 1.002544 AGCCGAACAGAGGAGGAAAAG 59.997 52.381 0.00 0.00 0.00 2.27
139 140 2.433838 CACCGGCAGCTGAGACTG 60.434 66.667 20.43 4.64 40.80 3.51
160 161 1.073897 GAGCTGGATGGGCCCATAC 59.926 63.158 37.05 37.05 36.70 2.39
185 186 3.896648 AAATTCACCGCAACACTGTAG 57.103 42.857 0.00 0.00 0.00 2.74
193 194 5.703592 TCACCGCAACACTGTAGATAATTTT 59.296 36.000 0.00 0.00 0.00 1.82
194 195 6.205853 TCACCGCAACACTGTAGATAATTTTT 59.794 34.615 0.00 0.00 0.00 1.94
231 232 2.563976 CGCAAGCGTTCATACATATGC 58.436 47.619 6.25 0.00 32.72 3.14
241 242 5.571357 CGTTCATACATATGCGCATACACTA 59.429 40.000 31.17 19.59 33.76 2.74
254 256 4.690122 GCATACACTAACCCTATGAACGT 58.310 43.478 0.00 0.00 0.00 3.99
261 263 4.523943 ACTAACCCTATGAACGTACACACA 59.476 41.667 0.00 0.00 0.00 3.72
262 264 3.308438 ACCCTATGAACGTACACACAC 57.692 47.619 0.00 0.00 0.00 3.82
263 265 2.028748 ACCCTATGAACGTACACACACC 60.029 50.000 0.00 0.00 0.00 4.16
283 289 5.613544 ACACCCTATCTCTATGAGTACCTCT 59.386 44.000 0.00 0.00 0.00 3.69
285 291 5.014755 ACCCTATCTCTATGAGTACCTCTGG 59.985 48.000 0.00 0.00 0.00 3.86
288 294 7.235079 CCTATCTCTATGAGTACCTCTGGAAA 58.765 42.308 0.00 0.00 0.00 3.13
294 300 4.873746 TGAGTACCTCTGGAAAACTGAG 57.126 45.455 0.00 0.00 42.82 3.35
298 304 0.674895 CCTCTGGAAAACTGAGCCGG 60.675 60.000 0.00 0.00 42.10 6.13
307 313 2.645838 AACTGAGCCGGCATATCATT 57.354 45.000 31.54 15.16 0.00 2.57
310 316 2.620115 ACTGAGCCGGCATATCATTTTG 59.380 45.455 31.54 13.72 0.00 2.44
319 325 6.345723 GCCGGCATATCATTTTGAAATTTACG 60.346 38.462 24.80 0.00 0.00 3.18
321 327 7.096640 CCGGCATATCATTTTGAAATTTACGAC 60.097 37.037 0.00 0.00 0.00 4.34
322 328 7.430793 CGGCATATCATTTTGAAATTTACGACA 59.569 33.333 0.00 0.00 0.00 4.35
328 334 6.799441 TCATTTTGAAATTTACGACATCACCG 59.201 34.615 0.00 0.00 0.00 4.94
345 351 3.807538 GTAGGCGCCTCGTCGTCA 61.808 66.667 36.73 11.30 36.23 4.35
353 359 2.646719 CTCGTCGTCAACCGGGAA 59.353 61.111 6.32 0.00 37.11 3.97
354 360 1.731969 CTCGTCGTCAACCGGGAAC 60.732 63.158 6.32 0.00 37.11 3.62
398 406 6.262601 TCGCCGAAAATCCTGAAATAAATTC 58.737 36.000 0.00 0.00 38.60 2.17
421 429 3.118112 AGGAATAATGTGAGCACCAGGAG 60.118 47.826 0.00 0.00 0.00 3.69
427 435 1.230324 GTGAGCACCAGGAGTTGAAC 58.770 55.000 0.00 0.00 0.00 3.18
461 469 2.932261 GGATACCATGTCCCTCAAACC 58.068 52.381 0.00 0.00 0.00 3.27
462 470 2.241176 GGATACCATGTCCCTCAAACCA 59.759 50.000 0.00 0.00 0.00 3.67
463 471 3.117512 GGATACCATGTCCCTCAAACCAT 60.118 47.826 0.00 0.00 0.00 3.55
464 472 2.514458 ACCATGTCCCTCAAACCATC 57.486 50.000 0.00 0.00 0.00 3.51
465 473 1.340017 ACCATGTCCCTCAAACCATCG 60.340 52.381 0.00 0.00 0.00 3.84
466 474 1.065491 CCATGTCCCTCAAACCATCGA 60.065 52.381 0.00 0.00 0.00 3.59
467 475 2.617788 CCATGTCCCTCAAACCATCGAA 60.618 50.000 0.00 0.00 0.00 3.71
468 476 2.178912 TGTCCCTCAAACCATCGAAC 57.821 50.000 0.00 0.00 0.00 3.95
469 477 1.271163 TGTCCCTCAAACCATCGAACC 60.271 52.381 0.00 0.00 0.00 3.62
470 478 1.060729 TCCCTCAAACCATCGAACCA 58.939 50.000 0.00 0.00 0.00 3.67
471 479 1.165270 CCCTCAAACCATCGAACCAC 58.835 55.000 0.00 0.00 0.00 4.16
472 480 1.544537 CCCTCAAACCATCGAACCACA 60.545 52.381 0.00 0.00 0.00 4.17
473 481 2.436417 CCTCAAACCATCGAACCACAT 58.564 47.619 0.00 0.00 0.00 3.21
474 482 2.162208 CCTCAAACCATCGAACCACATG 59.838 50.000 0.00 0.00 0.00 3.21
475 483 2.813754 CTCAAACCATCGAACCACATGT 59.186 45.455 0.00 0.00 0.00 3.21
476 484 3.218453 TCAAACCATCGAACCACATGTT 58.782 40.909 0.00 0.00 40.81 2.71
477 485 3.004210 TCAAACCATCGAACCACATGTTG 59.996 43.478 0.00 0.00 37.29 3.33
508 516 8.454106 GCACTGTAGATAACTTTTGATCACATT 58.546 33.333 0.00 0.00 0.00 2.71
551 559 8.914011 GTCTAAAATATGAACCTTAAATGGCCT 58.086 33.333 3.32 0.00 0.00 5.19
604 612 5.914033 TCCTCCACTAAATTTGATAGACGG 58.086 41.667 0.00 0.00 0.00 4.79
610 618 1.680338 AATTTGATAGACGGGCCAGC 58.320 50.000 4.39 0.00 0.00 4.85
611 619 0.839946 ATTTGATAGACGGGCCAGCT 59.160 50.000 4.39 4.99 0.00 4.24
612 620 0.107703 TTTGATAGACGGGCCAGCTG 60.108 55.000 6.78 6.78 0.00 4.24
613 621 1.264749 TTGATAGACGGGCCAGCTGT 61.265 55.000 13.81 0.15 0.00 4.40
752 761 1.251527 ACTGACCACCACCTAGCTCG 61.252 60.000 0.00 0.00 0.00 5.03
867 876 2.829384 GGACCTCCACAGCCACCAA 61.829 63.158 0.00 0.00 35.64 3.67
915 924 2.049156 TCTCTGAACGCGCACCAG 60.049 61.111 5.73 11.44 0.00 4.00
1050 1060 2.356278 GGCAAGGGCATCCTCACA 59.644 61.111 0.00 0.00 44.07 3.58
1053 1063 0.106819 GCAAGGGCATCCTCACAGAT 60.107 55.000 0.00 0.00 44.07 2.90
1174 1184 3.958147 CTGGGCATCGCGGTGAACT 62.958 63.158 26.37 0.00 0.00 3.01
1329 1339 1.874019 CACCATCGCCGTCTTCTCG 60.874 63.158 0.00 0.00 0.00 4.04
1364 1374 2.418197 CCGTACGTCCATGTCCATTCTT 60.418 50.000 15.21 0.00 0.00 2.52
1371 1381 3.025978 TCCATGTCCATTCTTCATTGCC 58.974 45.455 0.00 0.00 0.00 4.52
1400 1410 1.154338 CAGTTGCACGCTTAGCAGC 60.154 57.895 10.99 10.99 43.75 5.25
1748 1835 2.241190 CGTGCTGGTGTACGTGCAA 61.241 57.895 8.25 0.00 44.97 4.08
1874 1961 4.373116 GGGAGTCCGCTGACGCAA 62.373 66.667 13.47 0.00 46.51 4.85
2059 2146 2.499289 CACTAGGCAGTCTCCTGTCAAT 59.501 50.000 0.00 0.00 46.07 2.57
2089 2176 4.720649 ACTAAGCAGCAGAGAAATACGA 57.279 40.909 0.00 0.00 0.00 3.43
2156 2362 2.009774 GGCAACATTCGCATGTCTACT 58.990 47.619 0.00 0.00 43.34 2.57
2159 2365 3.001330 GCAACATTCGCATGTCTACTACC 59.999 47.826 0.00 0.00 43.34 3.18
2175 2718 9.339850 TGTCTACTACCAGTAGTCATATTCTTC 57.660 37.037 13.56 0.00 46.31 2.87
2186 2729 6.126863 AGTCATATTCTTCTGTGGACCAAA 57.873 37.500 0.00 0.00 0.00 3.28
2210 2753 4.573607 ACGTACTCTGCTACGATATGTTGA 59.426 41.667 9.88 0.00 41.75 3.18
2352 3220 9.838339 AGTTTAGTGATGAAACTAATAGGATGG 57.162 33.333 0.00 0.00 43.61 3.51
2355 3223 6.058183 AGTGATGAAACTAATAGGATGGCAC 58.942 40.000 0.00 0.00 0.00 5.01
2357 3225 4.853468 TGAAACTAATAGGATGGCACCA 57.147 40.909 8.48 0.00 0.00 4.17
2358 3226 5.387113 TGAAACTAATAGGATGGCACCAT 57.613 39.130 0.66 0.66 39.69 3.55
2359 3227 5.765510 TGAAACTAATAGGATGGCACCATT 58.234 37.500 3.16 8.17 36.70 3.16
2360 3228 6.194235 TGAAACTAATAGGATGGCACCATTT 58.806 36.000 3.16 0.00 36.70 2.32
2361 3229 6.321181 TGAAACTAATAGGATGGCACCATTTC 59.679 38.462 3.16 2.14 36.70 2.17
2434 4630 1.673337 CCATGCGGCCATCATCGAT 60.673 57.895 2.24 0.00 0.00 3.59
2689 4885 1.141881 CGGTTCCATCCTCCTCACG 59.858 63.158 0.00 0.00 0.00 4.35
2798 4994 1.617018 CGGCCTCTTCCTGTCCATCA 61.617 60.000 0.00 0.00 0.00 3.07
2962 5179 2.922503 TTCCTGCGAGAGTGCCCA 60.923 61.111 0.00 0.00 0.00 5.36
3238 5455 2.590007 GATGCCGGCATCGAGCTT 60.590 61.111 44.19 24.23 42.55 3.74
3297 5514 1.135575 GCATGCTACTTGCGCTTCTTT 60.136 47.619 11.37 0.00 46.63 2.52
3315 5532 2.999507 TTTTTCGCTTGTGTGTGTGT 57.000 40.000 0.00 0.00 0.00 3.72
3317 5534 4.624336 TTTTTCGCTTGTGTGTGTGTAT 57.376 36.364 0.00 0.00 0.00 2.29
3318 5535 5.736486 TTTTTCGCTTGTGTGTGTGTATA 57.264 34.783 0.00 0.00 0.00 1.47
3364 5585 5.865013 TGTATTCGGTGGCGTATAATGTATG 59.135 40.000 0.00 0.00 0.00 2.39
3379 5600 7.667043 ATAATGTATGTTGGCAAGGTATACG 57.333 36.000 17.28 0.00 0.00 3.06
3380 5601 4.475051 TGTATGTTGGCAAGGTATACGT 57.525 40.909 17.28 0.00 0.00 3.57
3382 5603 6.164417 TGTATGTTGGCAAGGTATACGTAT 57.836 37.500 13.54 13.54 0.00 3.06
3383 5604 6.218019 TGTATGTTGGCAAGGTATACGTATC 58.782 40.000 12.24 4.02 0.00 2.24
3384 5605 4.062677 TGTTGGCAAGGTATACGTATCC 57.937 45.455 12.24 12.84 0.00 2.59
3385 5606 3.707611 TGTTGGCAAGGTATACGTATCCT 59.292 43.478 12.24 14.82 0.00 3.24
3386 5607 4.202182 TGTTGGCAAGGTATACGTATCCTC 60.202 45.833 20.07 12.33 0.00 3.71
3387 5608 3.568443 TGGCAAGGTATACGTATCCTCA 58.432 45.455 20.07 13.99 0.00 3.86
3393 5614 6.572509 GCAAGGTATACGTATCCTCATCATGT 60.573 42.308 20.07 6.66 0.00 3.21
3394 5615 6.761099 AGGTATACGTATCCTCATCATGTC 57.239 41.667 12.24 0.00 0.00 3.06
3425 5646 7.406916 TGGAGTTTATTTGTACATGTGGGTAT 58.593 34.615 9.11 0.00 0.00 2.73
3469 5690 5.722021 AACGGGTTTGCTATTTCTCAATT 57.278 34.783 0.00 0.00 0.00 2.32
3476 5697 7.370383 GGTTTGCTATTTCTCAATTGACTGAA 58.630 34.615 3.38 5.04 0.00 3.02
3505 5726 6.153067 AGCTATAACTCAATCGATGCTGTAC 58.847 40.000 0.00 0.00 0.00 2.90
3506 5727 5.920840 GCTATAACTCAATCGATGCTGTACA 59.079 40.000 0.00 0.00 0.00 2.90
3507 5728 6.587990 GCTATAACTCAATCGATGCTGTACAT 59.412 38.462 0.00 0.00 43.54 2.29
3508 5729 6.775939 ATAACTCAATCGATGCTGTACATG 57.224 37.500 0.00 0.00 39.84 3.21
3510 5731 3.867493 ACTCAATCGATGCTGTACATGTG 59.133 43.478 9.11 0.00 39.84 3.21
3511 5732 3.197265 TCAATCGATGCTGTACATGTGG 58.803 45.455 9.11 0.00 39.84 4.17
3512 5733 2.245159 ATCGATGCTGTACATGTGGG 57.755 50.000 9.11 0.00 39.84 4.61
3513 5734 0.901827 TCGATGCTGTACATGTGGGT 59.098 50.000 9.11 0.00 39.84 4.51
3514 5735 2.104170 TCGATGCTGTACATGTGGGTA 58.896 47.619 9.11 0.00 39.84 3.69
3515 5736 2.698274 TCGATGCTGTACATGTGGGTAT 59.302 45.455 9.11 3.36 39.84 2.73
3516 5737 2.802247 CGATGCTGTACATGTGGGTATG 59.198 50.000 9.11 0.00 39.84 2.39
3517 5738 3.741075 CGATGCTGTACATGTGGGTATGT 60.741 47.826 9.11 0.00 43.34 2.29
3518 5739 3.712016 TGCTGTACATGTGGGTATGTT 57.288 42.857 9.11 0.00 41.31 2.71
3519 5740 4.027674 TGCTGTACATGTGGGTATGTTT 57.972 40.909 9.11 0.00 41.31 2.83
3520 5741 4.402829 TGCTGTACATGTGGGTATGTTTT 58.597 39.130 9.11 0.00 41.31 2.43
3521 5742 4.457603 TGCTGTACATGTGGGTATGTTTTC 59.542 41.667 9.11 0.00 41.31 2.29
3522 5743 4.700213 GCTGTACATGTGGGTATGTTTTCT 59.300 41.667 9.11 0.00 41.31 2.52
3523 5744 5.183140 GCTGTACATGTGGGTATGTTTTCTT 59.817 40.000 9.11 0.00 41.31 2.52
3524 5745 6.294508 GCTGTACATGTGGGTATGTTTTCTTT 60.295 38.462 9.11 0.00 41.31 2.52
3525 5746 7.589958 TGTACATGTGGGTATGTTTTCTTTT 57.410 32.000 9.11 0.00 41.31 2.27
3526 5747 7.653647 TGTACATGTGGGTATGTTTTCTTTTC 58.346 34.615 9.11 0.00 41.31 2.29
3527 5748 6.096673 ACATGTGGGTATGTTTTCTTTTCC 57.903 37.500 0.00 0.00 38.05 3.13
3528 5749 5.838521 ACATGTGGGTATGTTTTCTTTTCCT 59.161 36.000 0.00 0.00 38.05 3.36
3529 5750 6.326323 ACATGTGGGTATGTTTTCTTTTCCTT 59.674 34.615 0.00 0.00 38.05 3.36
3530 5751 6.800072 TGTGGGTATGTTTTCTTTTCCTTT 57.200 33.333 0.00 0.00 0.00 3.11
3531 5752 7.189079 TGTGGGTATGTTTTCTTTTCCTTTT 57.811 32.000 0.00 0.00 0.00 2.27
3532 5753 7.269316 TGTGGGTATGTTTTCTTTTCCTTTTC 58.731 34.615 0.00 0.00 0.00 2.29
3533 5754 6.704493 GTGGGTATGTTTTCTTTTCCTTTTCC 59.296 38.462 0.00 0.00 0.00 3.13
3534 5755 6.613679 TGGGTATGTTTTCTTTTCCTTTTCCT 59.386 34.615 0.00 0.00 0.00 3.36
3535 5756 7.126573 TGGGTATGTTTTCTTTTCCTTTTCCTT 59.873 33.333 0.00 0.00 0.00 3.36
3536 5757 8.644216 GGGTATGTTTTCTTTTCCTTTTCCTTA 58.356 33.333 0.00 0.00 0.00 2.69
3541 5762 8.927721 TGTTTTCTTTTCCTTTTCCTTAAAACG 58.072 29.630 0.00 0.00 37.20 3.60
3542 5763 8.385111 GTTTTCTTTTCCTTTTCCTTAAAACGG 58.615 33.333 0.00 0.00 31.37 4.44
3543 5764 6.151663 TCTTTTCCTTTTCCTTAAAACGGG 57.848 37.500 0.00 0.00 31.37 5.28
3544 5765 5.657745 TCTTTTCCTTTTCCTTAAAACGGGT 59.342 36.000 0.00 0.00 31.37 5.28
3545 5766 5.936187 TTTCCTTTTCCTTAAAACGGGTT 57.064 34.783 0.00 0.00 31.37 4.11
3546 5767 5.936187 TTCCTTTTCCTTAAAACGGGTTT 57.064 34.783 0.00 0.00 31.37 3.27
3547 5768 5.265350 TCCTTTTCCTTAAAACGGGTTTG 57.735 39.130 0.24 0.00 32.36 2.93
3548 5769 3.805422 CCTTTTCCTTAAAACGGGTTTGC 59.195 43.478 0.24 0.00 32.36 3.68
3549 5770 4.442332 CCTTTTCCTTAAAACGGGTTTGCT 60.442 41.667 0.24 0.00 32.36 3.91
3550 5771 5.221283 CCTTTTCCTTAAAACGGGTTTGCTA 60.221 40.000 0.24 0.00 32.36 3.49
3551 5772 6.408107 TTTTCCTTAAAACGGGTTTGCTAT 57.592 33.333 0.24 0.00 32.36 2.97
3552 5773 6.408107 TTTCCTTAAAACGGGTTTGCTATT 57.592 33.333 0.24 0.00 32.36 1.73
3553 5774 6.408107 TTCCTTAAAACGGGTTTGCTATTT 57.592 33.333 0.24 0.00 32.36 1.40
3554 5775 6.016213 TCCTTAAAACGGGTTTGCTATTTC 57.984 37.500 0.24 0.00 32.36 2.17
3555 5776 5.771165 TCCTTAAAACGGGTTTGCTATTTCT 59.229 36.000 0.24 0.00 32.36 2.52
3556 5777 6.072342 TCCTTAAAACGGGTTTGCTATTTCTC 60.072 38.462 0.24 0.00 32.36 2.87
3557 5778 6.294286 CCTTAAAACGGGTTTGCTATTTCTCA 60.294 38.462 0.24 0.00 32.36 3.27
3558 5779 5.523438 AAAACGGGTTTGCTATTTCTCAA 57.477 34.783 0.00 0.00 32.36 3.02
3559 5780 5.722021 AAACGGGTTTGCTATTTCTCAAT 57.278 34.783 0.00 0.00 0.00 2.57
3560 5781 5.722021 AACGGGTTTGCTATTTCTCAATT 57.278 34.783 0.00 0.00 0.00 2.32
3561 5782 5.059404 ACGGGTTTGCTATTTCTCAATTG 57.941 39.130 0.00 0.00 0.00 2.32
3562 5783 4.764823 ACGGGTTTGCTATTTCTCAATTGA 59.235 37.500 8.12 8.12 0.00 2.57
3563 5784 5.095490 CGGGTTTGCTATTTCTCAATTGAC 58.905 41.667 3.38 0.00 0.00 3.18
3564 5785 5.106157 CGGGTTTGCTATTTCTCAATTGACT 60.106 40.000 3.38 0.00 0.00 3.41
3565 5786 6.095377 GGGTTTGCTATTTCTCAATTGACTG 58.905 40.000 3.38 0.00 0.00 3.51
3566 5787 6.071952 GGGTTTGCTATTTCTCAATTGACTGA 60.072 38.462 3.38 0.00 0.00 3.41
3567 5788 7.370383 GGTTTGCTATTTCTCAATTGACTGAA 58.630 34.615 3.38 5.04 0.00 3.02
3568 5789 7.867403 GGTTTGCTATTTCTCAATTGACTGAAA 59.133 33.333 19.38 19.38 33.74 2.69
3569 5790 9.248291 GTTTGCTATTTCTCAATTGACTGAAAA 57.752 29.630 20.40 12.34 33.09 2.29
3570 5791 9.814899 TTTGCTATTTCTCAATTGACTGAAAAA 57.185 25.926 20.40 11.42 33.09 1.94
3571 5792 9.985730 TTGCTATTTCTCAATTGACTGAAAAAT 57.014 25.926 20.40 14.97 32.22 1.82
3588 5809 9.817809 ACTGAAAAATAGCTATAACTCAATCGA 57.182 29.630 6.68 0.00 0.00 3.59
3591 5812 9.535270 GAAAAATAGCTATAACTCAATCGATGC 57.465 33.333 6.68 0.00 0.00 3.91
3592 5813 8.839310 AAAATAGCTATAACTCAATCGATGCT 57.161 30.769 6.68 2.27 0.00 3.79
3593 5814 7.824704 AATAGCTATAACTCAATCGATGCTG 57.175 36.000 6.68 0.00 0.00 4.41
3594 5815 5.207110 AGCTATAACTCAATCGATGCTGT 57.793 39.130 0.00 0.00 0.00 4.40
3595 5816 6.332735 AGCTATAACTCAATCGATGCTGTA 57.667 37.500 0.00 0.00 0.00 2.74
3596 5817 6.153067 AGCTATAACTCAATCGATGCTGTAC 58.847 40.000 0.00 0.00 0.00 2.90
3597 5818 5.920840 GCTATAACTCAATCGATGCTGTACA 59.079 40.000 0.00 0.00 0.00 2.90
3598 5819 6.587990 GCTATAACTCAATCGATGCTGTACAT 59.412 38.462 0.00 0.00 43.54 2.29
3599 5820 6.775939 ATAACTCAATCGATGCTGTACATG 57.224 37.500 0.00 0.00 39.84 3.21
3600 5821 4.128925 ACTCAATCGATGCTGTACATGT 57.871 40.909 2.69 2.69 39.84 3.21
3601 5822 3.867493 ACTCAATCGATGCTGTACATGTG 59.133 43.478 9.11 0.00 39.84 3.21
3602 5823 3.197265 TCAATCGATGCTGTACATGTGG 58.803 45.455 9.11 0.00 39.84 4.17
3603 5824 2.245159 ATCGATGCTGTACATGTGGG 57.755 50.000 9.11 0.00 39.84 4.61
3604 5825 0.901827 TCGATGCTGTACATGTGGGT 59.098 50.000 9.11 0.00 39.84 4.51
3605 5826 2.104170 TCGATGCTGTACATGTGGGTA 58.896 47.619 9.11 0.00 39.84 3.69
3606 5827 2.698274 TCGATGCTGTACATGTGGGTAT 59.302 45.455 9.11 3.36 39.84 2.73
3607 5828 2.802247 CGATGCTGTACATGTGGGTATG 59.198 50.000 9.11 0.00 39.84 2.39
3608 5829 3.741075 CGATGCTGTACATGTGGGTATGT 60.741 47.826 9.11 0.00 43.34 2.29
3609 5830 3.712016 TGCTGTACATGTGGGTATGTT 57.288 42.857 9.11 0.00 41.31 2.71
3610 5831 4.027674 TGCTGTACATGTGGGTATGTTT 57.972 40.909 9.11 0.00 41.31 2.83
3611 5832 4.402829 TGCTGTACATGTGGGTATGTTTT 58.597 39.130 9.11 0.00 41.31 2.43
3612 5833 4.457603 TGCTGTACATGTGGGTATGTTTTC 59.542 41.667 9.11 0.00 41.31 2.29
3613 5834 4.700213 GCTGTACATGTGGGTATGTTTTCT 59.300 41.667 9.11 0.00 41.31 2.52
3614 5835 5.183140 GCTGTACATGTGGGTATGTTTTCTT 59.817 40.000 9.11 0.00 41.31 2.52
3615 5836 6.294508 GCTGTACATGTGGGTATGTTTTCTTT 60.295 38.462 9.11 0.00 41.31 2.52
3616 5837 7.589958 TGTACATGTGGGTATGTTTTCTTTT 57.410 32.000 9.11 0.00 41.31 2.27
3617 5838 7.653647 TGTACATGTGGGTATGTTTTCTTTTC 58.346 34.615 9.11 0.00 41.31 2.29
3618 5839 6.096673 ACATGTGGGTATGTTTTCTTTTCC 57.903 37.500 0.00 0.00 38.05 3.13
3619 5840 5.838521 ACATGTGGGTATGTTTTCTTTTCCT 59.161 36.000 0.00 0.00 38.05 3.36
3620 5841 6.326323 ACATGTGGGTATGTTTTCTTTTCCTT 59.674 34.615 0.00 0.00 38.05 3.36
3621 5842 6.800072 TGTGGGTATGTTTTCTTTTCCTTT 57.200 33.333 0.00 0.00 0.00 3.11
3622 5843 7.189079 TGTGGGTATGTTTTCTTTTCCTTTT 57.811 32.000 0.00 0.00 0.00 2.27
3623 5844 7.269316 TGTGGGTATGTTTTCTTTTCCTTTTC 58.731 34.615 0.00 0.00 0.00 2.29
3624 5845 6.704493 GTGGGTATGTTTTCTTTTCCTTTTCC 59.296 38.462 0.00 0.00 0.00 3.13
3625 5846 6.613679 TGGGTATGTTTTCTTTTCCTTTTCCT 59.386 34.615 0.00 0.00 0.00 3.36
3626 5847 7.126573 TGGGTATGTTTTCTTTTCCTTTTCCTT 59.873 33.333 0.00 0.00 0.00 3.36
3627 5848 8.644216 GGGTATGTTTTCTTTTCCTTTTCCTTA 58.356 33.333 0.00 0.00 0.00 2.69
3631 5852 8.468720 TGTTTTCTTTTCCTTTTCCTTAAACG 57.531 30.769 0.00 0.00 0.00 3.60
3632 5853 7.546316 TGTTTTCTTTTCCTTTTCCTTAAACGG 59.454 33.333 0.00 0.00 35.76 4.44
3633 5854 5.777850 TCTTTTCCTTTTCCTTAAACGGG 57.222 39.130 0.00 0.00 35.29 5.28
3634 5855 5.202765 TCTTTTCCTTTTCCTTAAACGGGT 58.797 37.500 0.00 0.00 35.29 5.28
3635 5856 5.657745 TCTTTTCCTTTTCCTTAAACGGGTT 59.342 36.000 0.00 0.00 35.29 4.11
3636 5857 5.936187 TTTCCTTTTCCTTAAACGGGTTT 57.064 34.783 2.05 2.05 35.29 3.27
3637 5858 4.922471 TCCTTTTCCTTAAACGGGTTTG 57.078 40.909 7.04 0.00 35.29 2.93
3638 5859 3.068448 TCCTTTTCCTTAAACGGGTTTGC 59.932 43.478 7.04 0.00 35.29 3.68
3639 5860 3.069016 CCTTTTCCTTAAACGGGTTTGCT 59.931 43.478 7.04 0.00 31.84 3.91
3640 5861 4.278919 CCTTTTCCTTAAACGGGTTTGCTA 59.721 41.667 7.04 0.00 31.84 3.49
3641 5862 5.047590 CCTTTTCCTTAAACGGGTTTGCTAT 60.048 40.000 7.04 0.00 31.84 2.97
3642 5863 6.408107 TTTTCCTTAAACGGGTTTGCTATT 57.592 33.333 7.04 0.00 34.23 1.73
3643 5864 5.632244 TTCCTTAAACGGGTTTGCTATTC 57.368 39.130 7.04 0.00 34.23 1.75
3644 5865 4.011698 TCCTTAAACGGGTTTGCTATTCC 58.988 43.478 7.04 0.00 34.23 3.01
3645 5866 4.014406 CCTTAAACGGGTTTGCTATTCCT 58.986 43.478 7.04 0.00 34.23 3.36
3646 5867 4.461431 CCTTAAACGGGTTTGCTATTCCTT 59.539 41.667 7.04 0.00 34.23 3.36
3647 5868 5.648960 CCTTAAACGGGTTTGCTATTCCTTA 59.351 40.000 7.04 0.00 34.23 2.69
3648 5869 6.151480 CCTTAAACGGGTTTGCTATTCCTTAA 59.849 38.462 7.04 0.00 34.23 1.85
3649 5870 7.309316 CCTTAAACGGGTTTGCTATTCCTTAAA 60.309 37.037 7.04 0.00 34.23 1.52
3650 5871 5.381174 AACGGGTTTGCTATTCCTTAAAC 57.619 39.130 0.00 0.00 33.48 2.01
3651 5872 3.437741 ACGGGTTTGCTATTCCTTAAACG 59.562 43.478 0.00 0.00 34.68 3.60
3652 5873 3.181504 CGGGTTTGCTATTCCTTAAACGG 60.182 47.826 0.00 0.00 34.68 4.44
3653 5874 3.129813 GGGTTTGCTATTCCTTAAACGGG 59.870 47.826 0.00 0.00 34.68 5.28
3654 5875 3.760151 GGTTTGCTATTCCTTAAACGGGT 59.240 43.478 0.00 0.00 34.68 5.28
3655 5876 4.943093 GGTTTGCTATTCCTTAAACGGGTA 59.057 41.667 0.00 0.00 34.68 3.69
3656 5877 5.591472 GGTTTGCTATTCCTTAAACGGGTAT 59.409 40.000 0.00 0.00 34.68 2.73
3657 5878 6.459161 GGTTTGCTATTCCTTAAACGGGTATG 60.459 42.308 0.00 0.00 34.68 2.39
3658 5879 5.362105 TGCTATTCCTTAAACGGGTATGT 57.638 39.130 0.00 0.00 0.00 2.29
3659 5880 5.747342 TGCTATTCCTTAAACGGGTATGTT 58.253 37.500 0.00 0.00 0.00 2.71
3660 5881 6.181908 TGCTATTCCTTAAACGGGTATGTTT 58.818 36.000 0.00 0.00 43.95 2.83
3661 5882 6.660094 TGCTATTCCTTAAACGGGTATGTTTT 59.340 34.615 0.00 0.00 41.92 2.43
3662 5883 7.148205 TGCTATTCCTTAAACGGGTATGTTTTC 60.148 37.037 0.00 0.00 41.92 2.29
3663 5884 7.066645 GCTATTCCTTAAACGGGTATGTTTTCT 59.933 37.037 0.00 0.00 41.92 2.52
3664 5885 7.770366 ATTCCTTAAACGGGTATGTTTTCTT 57.230 32.000 0.00 0.00 41.92 2.52
3665 5886 7.585579 TTCCTTAAACGGGTATGTTTTCTTT 57.414 32.000 0.00 0.00 41.92 2.52
3666 5887 7.585579 TCCTTAAACGGGTATGTTTTCTTTT 57.414 32.000 0.00 0.00 41.92 2.27
3667 5888 7.650890 TCCTTAAACGGGTATGTTTTCTTTTC 58.349 34.615 0.00 0.00 41.92 2.29
3668 5889 6.864685 CCTTAAACGGGTATGTTTTCTTTTCC 59.135 38.462 0.00 0.00 41.92 3.13
3669 5890 7.255695 CCTTAAACGGGTATGTTTTCTTTTCCT 60.256 37.037 0.00 0.00 41.92 3.36
3670 5891 6.474140 AAACGGGTATGTTTTCTTTTCCTT 57.526 33.333 0.00 0.00 38.89 3.36
3671 5892 6.474140 AACGGGTATGTTTTCTTTTCCTTT 57.526 33.333 0.00 0.00 0.00 3.11
3672 5893 6.474140 ACGGGTATGTTTTCTTTTCCTTTT 57.526 33.333 0.00 0.00 0.00 2.27
3673 5894 6.509656 ACGGGTATGTTTTCTTTTCCTTTTC 58.490 36.000 0.00 0.00 0.00 2.29
3674 5895 5.627780 CGGGTATGTTTTCTTTTCCTTTTCG 59.372 40.000 0.00 0.00 0.00 3.46
3675 5896 6.509656 GGGTATGTTTTCTTTTCCTTTTCGT 58.490 36.000 0.00 0.00 0.00 3.85
3676 5897 6.982141 GGGTATGTTTTCTTTTCCTTTTCGTT 59.018 34.615 0.00 0.00 0.00 3.85
3677 5898 7.493320 GGGTATGTTTTCTTTTCCTTTTCGTTT 59.507 33.333 0.00 0.00 0.00 3.60
3678 5899 8.875803 GGTATGTTTTCTTTTCCTTTTCGTTTT 58.124 29.630 0.00 0.00 0.00 2.43
3679 5900 9.895894 GTATGTTTTCTTTTCCTTTTCGTTTTC 57.104 29.630 0.00 0.00 0.00 2.29
3680 5901 8.771920 ATGTTTTCTTTTCCTTTTCGTTTTCT 57.228 26.923 0.00 0.00 0.00 2.52
3681 5902 8.596271 TGTTTTCTTTTCCTTTTCGTTTTCTT 57.404 26.923 0.00 0.00 0.00 2.52
3682 5903 9.047371 TGTTTTCTTTTCCTTTTCGTTTTCTTT 57.953 25.926 0.00 0.00 0.00 2.52
3683 5904 9.872757 GTTTTCTTTTCCTTTTCGTTTTCTTTT 57.127 25.926 0.00 0.00 0.00 2.27
3685 5906 7.821595 TCTTTTCCTTTTCGTTTTCTTTTCC 57.178 32.000 0.00 0.00 0.00 3.13
3686 5907 7.608153 TCTTTTCCTTTTCGTTTTCTTTTCCT 58.392 30.769 0.00 0.00 0.00 3.36
3687 5908 8.092068 TCTTTTCCTTTTCGTTTTCTTTTCCTT 58.908 29.630 0.00 0.00 0.00 3.36
3688 5909 8.610248 TTTTCCTTTTCGTTTTCTTTTCCTTT 57.390 26.923 0.00 0.00 0.00 3.11
3689 5910 8.610248 TTTCCTTTTCGTTTTCTTTTCCTTTT 57.390 26.923 0.00 0.00 0.00 2.27
3690 5911 7.821595 TCCTTTTCGTTTTCTTTTCCTTTTC 57.178 32.000 0.00 0.00 0.00 2.29
3691 5912 6.814644 TCCTTTTCGTTTTCTTTTCCTTTTCC 59.185 34.615 0.00 0.00 0.00 3.13
3692 5913 6.816640 CCTTTTCGTTTTCTTTTCCTTTTCCT 59.183 34.615 0.00 0.00 0.00 3.36
3693 5914 7.333423 CCTTTTCGTTTTCTTTTCCTTTTCCTT 59.667 33.333 0.00 0.00 0.00 3.36
3694 5915 9.361315 CTTTTCGTTTTCTTTTCCTTTTCCTTA 57.639 29.630 0.00 0.00 0.00 2.69
3695 5916 9.708092 TTTTCGTTTTCTTTTCCTTTTCCTTAA 57.292 25.926 0.00 0.00 0.00 1.85
3696 5917 9.708092 TTTCGTTTTCTTTTCCTTTTCCTTAAA 57.292 25.926 0.00 0.00 0.00 1.52
3697 5918 8.692110 TCGTTTTCTTTTCCTTTTCCTTAAAC 57.308 30.769 0.00 0.00 0.00 2.01
3698 5919 7.485595 TCGTTTTCTTTTCCTTTTCCTTAAACG 59.514 33.333 0.00 0.00 42.93 3.60
3699 5920 7.253850 CGTTTTCTTTTCCTTTTCCTTAAACGG 60.254 37.037 0.00 0.00 39.90 4.44
3700 5921 5.777850 TCTTTTCCTTTTCCTTAAACGGG 57.222 39.130 0.00 0.00 35.29 5.28
3701 5922 5.202765 TCTTTTCCTTTTCCTTAAACGGGT 58.797 37.500 0.00 0.00 35.29 5.28
3702 5923 5.657745 TCTTTTCCTTTTCCTTAAACGGGTT 59.342 36.000 0.00 0.00 35.29 4.11
3703 5924 5.936187 TTTCCTTTTCCTTAAACGGGTTT 57.064 34.783 2.05 2.05 35.29 3.27
3704 5925 7.341512 TCTTTTCCTTTTCCTTAAACGGGTTTA 59.658 33.333 0.05 0.05 35.29 2.01
3705 5926 7.600231 TTTCCTTTTCCTTAAACGGGTTTAT 57.400 32.000 4.96 0.00 35.29 1.40
3706 5927 7.600231 TTCCTTTTCCTTAAACGGGTTTATT 57.400 32.000 4.96 0.00 35.29 1.40
3707 5928 7.600231 TCCTTTTCCTTAAACGGGTTTATTT 57.400 32.000 4.96 0.00 35.29 1.40
3708 5929 7.435305 TCCTTTTCCTTAAACGGGTTTATTTG 58.565 34.615 4.96 0.46 35.29 2.32
3709 5930 7.069702 TCCTTTTCCTTAAACGGGTTTATTTGT 59.930 33.333 4.96 0.00 35.29 2.83
3715 5936 7.668886 TCCTTAAACGGGTTTATTTGTGGATTA 59.331 33.333 4.96 0.00 35.27 1.75
3717 5938 9.863845 CTTAAACGGGTTTATTTGTGGATTATT 57.136 29.630 4.96 0.00 35.27 1.40
3722 5943 6.403855 CGGGTTTATTTGTGGATTATTCACGT 60.404 38.462 0.00 0.00 37.91 4.49
3729 5950 2.671396 GTGGATTATTCACGTCGTGCTT 59.329 45.455 20.56 12.10 32.98 3.91
3730 5951 3.124636 GTGGATTATTCACGTCGTGCTTT 59.875 43.478 20.56 9.70 32.98 3.51
3779 6004 8.889717 TCTATTCTCCGTTCCAAAATAAATGTC 58.110 33.333 0.00 0.00 0.00 3.06
3783 6008 4.083217 TCCGTTCCAAAATAAATGTCGTGG 60.083 41.667 0.00 0.00 0.00 4.94
3790 6015 6.864165 TCCAAAATAAATGTCGTGGTTTTAGC 59.136 34.615 0.00 0.00 0.00 3.09
3792 6017 7.383843 CCAAAATAAATGTCGTGGTTTTAGCTT 59.616 33.333 0.00 0.00 0.00 3.74
3828 6053 6.929625 TCCTCTTGATGCTATACAATAGCTC 58.070 40.000 17.29 12.93 40.95 4.09
3832 6057 9.352784 CTCTTGATGCTATACAATAGCTCTAAC 57.647 37.037 17.29 7.18 40.95 2.34
3868 6093 9.959749 TTCCATAATTTCTAAAAACGATATGCC 57.040 29.630 0.00 0.00 0.00 4.40
3883 6108 9.705290 AAACGATATGCCTTTTTATTTTTCACT 57.295 25.926 0.00 0.00 0.00 3.41
3901 6126 7.630242 TTTCACTGTGAAAACTTCTCTCAAT 57.370 32.000 28.30 0.00 42.72 2.57
3902 6127 6.609237 TCACTGTGAAAACTTCTCTCAATG 57.391 37.500 8.27 0.00 0.00 2.82
3904 6129 5.008415 CACTGTGAAAACTTCTCTCAATGCT 59.992 40.000 0.32 0.00 0.00 3.79
3906 6131 6.096001 ACTGTGAAAACTTCTCTCAATGCTTT 59.904 34.615 0.00 0.00 0.00 3.51
3909 6134 5.829924 TGAAAACTTCTCTCAATGCTTTCCT 59.170 36.000 0.00 0.00 0.00 3.36
3913 6138 5.729510 ACTTCTCTCAATGCTTTCCTAGTC 58.270 41.667 0.00 0.00 0.00 2.59
3917 6142 6.402222 TCTCTCAATGCTTTCCTAGTCTTTC 58.598 40.000 0.00 0.00 0.00 2.62
3923 6148 7.287696 TCAATGCTTTCCTAGTCTTTCCTTTTT 59.712 33.333 0.00 0.00 0.00 1.94
3924 6149 6.635030 TGCTTTCCTAGTCTTTCCTTTTTC 57.365 37.500 0.00 0.00 0.00 2.29
3929 6154 6.170846 TCCTAGTCTTTCCTTTTTCGACTT 57.829 37.500 0.00 0.00 36.46 3.01
3930 6155 5.989777 TCCTAGTCTTTCCTTTTTCGACTTG 59.010 40.000 0.00 0.00 36.46 3.16
3931 6156 4.553756 AGTCTTTCCTTTTTCGACTTGC 57.446 40.909 0.00 0.00 31.36 4.01
3943 6168 0.670546 CGACTTGCCTGGTTGATCGT 60.671 55.000 0.00 0.00 0.00 3.73
3945 6170 0.670546 ACTTGCCTGGTTGATCGTCG 60.671 55.000 0.00 0.00 0.00 5.12
3963 6188 3.181530 CGTCGACCTTCATTCATTGTGAC 60.182 47.826 10.58 0.00 0.00 3.67
3965 6190 4.452455 GTCGACCTTCATTCATTGTGACTT 59.548 41.667 3.51 0.00 0.00 3.01
3966 6191 4.690748 TCGACCTTCATTCATTGTGACTTC 59.309 41.667 0.00 0.00 0.00 3.01
3972 6197 5.112220 TCATTCATTGTGACTTCTGTTGC 57.888 39.130 0.00 0.00 0.00 4.17
3991 6216 2.092968 TGCGGAATCAAACCATAGAGCT 60.093 45.455 0.00 0.00 0.00 4.09
3993 6218 3.743396 GCGGAATCAAACCATAGAGCTAG 59.257 47.826 0.00 0.00 0.00 3.42
3996 6221 4.513318 GGAATCAAACCATAGAGCTAGTGC 59.487 45.833 0.00 0.00 40.05 4.40
3999 6224 4.253685 TCAAACCATAGAGCTAGTGCAAC 58.746 43.478 0.00 0.00 42.74 4.17
4014 6239 3.516615 GTGCAACTGAGATCTACAGTCC 58.483 50.000 20.82 16.58 46.01 3.85
4044 6269 7.639945 CGTGAAACTAAAGAGGATTTTCAGTT 58.360 34.615 0.00 0.00 36.97 3.16
4051 6276 3.949132 AGAGGATTTTCAGTTCTCTGCC 58.051 45.455 0.00 0.00 41.10 4.85
4073 6298 2.290323 CCACCAACCAGAACCTAGAAGG 60.290 54.545 0.00 0.00 42.49 3.46
4075 6300 3.264450 CACCAACCAGAACCTAGAAGGAT 59.736 47.826 0.00 0.00 37.67 3.24
4076 6301 4.469945 CACCAACCAGAACCTAGAAGGATA 59.530 45.833 0.00 0.00 37.67 2.59
4077 6302 4.470304 ACCAACCAGAACCTAGAAGGATAC 59.530 45.833 0.00 0.00 37.67 2.24
4120 6345 7.387948 CACAGGTATAGACTAAAAACACTGCTT 59.612 37.037 0.00 0.00 0.00 3.91
4126 6351 6.509418 AGACTAAAAACACTGCTTGTCAAA 57.491 33.333 0.00 0.00 37.51 2.69
4144 6369 5.126869 TGTCAAAAGCACATACCCCAATATG 59.873 40.000 0.00 0.00 38.34 1.78
4147 6372 4.534647 AAGCACATACCCCAATATGGAA 57.465 40.909 0.00 0.00 40.96 3.53
4180 6407 2.304761 TGTTGGTAAGGTCTGGTCATCC 59.695 50.000 0.00 0.00 0.00 3.51
4182 6409 0.179081 GGTAAGGTCTGGTCATCCGC 60.179 60.000 0.00 0.00 36.30 5.54
4183 6410 0.535335 GTAAGGTCTGGTCATCCGCA 59.465 55.000 0.00 0.00 36.30 5.69
4184 6411 1.139058 GTAAGGTCTGGTCATCCGCAT 59.861 52.381 0.00 0.00 36.30 4.73
4192 6419 1.429148 GGTCATCCGCATCGTGGTTC 61.429 60.000 0.00 0.00 34.40 3.62
4194 6421 1.107945 TCATCCGCATCGTGGTTCTA 58.892 50.000 0.00 0.00 34.40 2.10
4232 6459 4.555262 GGAGAGAATTTGAGATCTAGGCG 58.445 47.826 0.00 0.00 0.00 5.52
4258 6485 7.461938 GCTCTTTGATAACATGAATTTTCACGC 60.462 37.037 0.00 0.00 40.49 5.34
4268 6495 5.389859 TGAATTTTCACGCCTTCATCAAT 57.610 34.783 0.00 0.00 31.01 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 6.184789 GGGGTAATTACACATGGAGAAAAGA 58.815 40.000 19.28 0.00 0.00 2.52
17 18 5.258051 GTGGGGTAATTACACATGGAGAAA 58.742 41.667 19.28 0.00 35.30 2.52
25 26 3.401182 GTGTTCGTGGGGTAATTACACA 58.599 45.455 19.28 13.09 35.66 3.72
32 33 1.955451 ATAGGGTGTTCGTGGGGTAA 58.045 50.000 0.00 0.00 0.00 2.85
78 79 3.277715 GGCTTTCAAGGAAGGATCTCAG 58.722 50.000 0.00 0.00 0.00 3.35
103 104 3.055747 GGTGTCTACCTTTTCCTCCTCTG 60.056 52.174 0.00 0.00 43.97 3.35
116 117 2.125512 CAGCTGCCGGTGTCTACC 60.126 66.667 0.00 0.00 43.89 3.18
128 129 2.582272 AGCTCTCCAGTCTCAGCTG 58.418 57.895 7.63 7.63 40.79 4.24
131 132 1.409790 CATCCAGCTCTCCAGTCTCAG 59.590 57.143 0.00 0.00 0.00 3.35
139 140 3.883549 GGGCCCATCCAGCTCTCC 61.884 72.222 19.95 0.00 36.21 3.71
193 194 5.728344 GCTTGCGTCTGTACTGTGTTAAAAA 60.728 40.000 0.00 0.00 0.00 1.94
194 195 4.260456 GCTTGCGTCTGTACTGTGTTAAAA 60.260 41.667 0.00 0.00 0.00 1.52
202 203 0.435008 GAACGCTTGCGTCTGTACTG 59.565 55.000 20.87 0.00 0.00 2.74
208 209 2.010145 ATGTATGAACGCTTGCGTCT 57.990 45.000 20.87 11.16 0.00 4.18
209 210 3.787826 CATATGTATGAACGCTTGCGTC 58.212 45.455 20.87 14.17 35.75 5.19
216 217 2.880822 ATGCGCATATGTATGAACGC 57.119 45.000 24.02 13.91 41.93 4.84
219 220 6.367695 GGTTAGTGTATGCGCATATGTATGAA 59.632 38.462 31.14 17.68 35.75 2.57
231 232 3.734231 CGTTCATAGGGTTAGTGTATGCG 59.266 47.826 0.00 0.00 0.00 4.73
241 242 3.555586 GGTGTGTGTACGTTCATAGGGTT 60.556 47.826 0.00 0.00 0.00 4.11
254 256 6.014771 ACTCATAGAGATAGGGTGTGTGTA 57.985 41.667 0.31 0.00 33.32 2.90
283 289 0.326595 TATGCCGGCTCAGTTTTCCA 59.673 50.000 29.70 2.45 0.00 3.53
285 291 2.288666 TGATATGCCGGCTCAGTTTTC 58.711 47.619 29.70 14.44 0.00 2.29
288 294 2.645838 AATGATATGCCGGCTCAGTT 57.354 45.000 29.70 15.08 0.00 3.16
294 300 5.989551 AAATTTCAAAATGATATGCCGGC 57.010 34.783 22.73 22.73 0.00 6.13
307 313 5.676532 ACGGTGATGTCGTAAATTTCAAA 57.323 34.783 0.00 0.00 39.22 2.69
310 316 4.260091 GCCTACGGTGATGTCGTAAATTTC 60.260 45.833 0.00 0.00 41.62 2.17
319 325 2.585247 GGCGCCTACGGTGATGTC 60.585 66.667 22.15 0.00 40.57 3.06
321 327 2.279517 GAGGCGCCTACGGTGATG 60.280 66.667 32.97 0.00 40.57 3.07
322 328 3.900892 CGAGGCGCCTACGGTGAT 61.901 66.667 32.97 4.00 40.57 3.06
328 334 3.332493 TTGACGACGAGGCGCCTAC 62.332 63.158 32.97 22.05 33.86 3.18
342 348 1.373873 GGAGACGTTCCCGGTTGAC 60.374 63.158 0.00 0.00 40.37 3.18
350 356 1.468914 GCTTTCAATGGGAGACGTTCC 59.531 52.381 7.90 7.90 46.00 3.62
351 357 1.128692 CGCTTTCAATGGGAGACGTTC 59.871 52.381 0.00 0.00 0.00 3.95
353 359 1.298859 GCGCTTTCAATGGGAGACGT 61.299 55.000 0.00 0.00 0.00 4.34
354 360 1.298157 TGCGCTTTCAATGGGAGACG 61.298 55.000 9.73 0.00 0.00 4.18
355 361 1.064654 GATGCGCTTTCAATGGGAGAC 59.935 52.381 9.73 0.00 0.00 3.36
398 406 2.947652 CCTGGTGCTCACATTATTCCTG 59.052 50.000 2.21 0.00 0.00 3.86
408 416 1.230324 GTTCAACTCCTGGTGCTCAC 58.770 55.000 0.00 0.00 0.00 3.51
409 417 0.108585 GGTTCAACTCCTGGTGCTCA 59.891 55.000 0.00 0.00 0.00 4.26
421 429 0.883833 CCAGCACATCAGGGTTCAAC 59.116 55.000 0.00 0.00 0.00 3.18
427 435 0.109342 GTATCCCCAGCACATCAGGG 59.891 60.000 0.00 0.00 40.98 4.45
447 455 2.401583 TCGATGGTTTGAGGGACATG 57.598 50.000 0.00 0.00 0.00 3.21
448 456 2.618045 GGTTCGATGGTTTGAGGGACAT 60.618 50.000 0.00 0.00 0.00 3.06
449 457 1.271163 GGTTCGATGGTTTGAGGGACA 60.271 52.381 0.00 0.00 0.00 4.02
450 458 1.271163 TGGTTCGATGGTTTGAGGGAC 60.271 52.381 0.00 0.00 0.00 4.46
451 459 1.060729 TGGTTCGATGGTTTGAGGGA 58.939 50.000 0.00 0.00 0.00 4.20
452 460 1.165270 GTGGTTCGATGGTTTGAGGG 58.835 55.000 0.00 0.00 0.00 4.30
453 461 1.890876 TGTGGTTCGATGGTTTGAGG 58.109 50.000 0.00 0.00 0.00 3.86
454 462 2.813754 ACATGTGGTTCGATGGTTTGAG 59.186 45.455 0.00 0.00 0.00 3.02
455 463 2.857483 ACATGTGGTTCGATGGTTTGA 58.143 42.857 0.00 0.00 0.00 2.69
456 464 3.307674 CAACATGTGGTTCGATGGTTTG 58.692 45.455 0.00 0.00 37.72 2.93
457 465 2.295909 CCAACATGTGGTTCGATGGTTT 59.704 45.455 0.00 0.00 43.20 3.27
458 466 1.885887 CCAACATGTGGTTCGATGGTT 59.114 47.619 0.00 0.00 43.20 3.67
459 467 1.533625 CCAACATGTGGTTCGATGGT 58.466 50.000 0.00 0.00 43.20 3.55
469 477 0.662619 ACAGTGCGAACCAACATGTG 59.337 50.000 0.00 0.00 0.00 3.21
470 478 2.143122 CTACAGTGCGAACCAACATGT 58.857 47.619 0.00 0.00 0.00 3.21
471 479 2.412870 TCTACAGTGCGAACCAACATG 58.587 47.619 0.00 0.00 0.00 3.21
472 480 2.831685 TCTACAGTGCGAACCAACAT 57.168 45.000 0.00 0.00 0.00 2.71
473 481 2.831685 ATCTACAGTGCGAACCAACA 57.168 45.000 0.00 0.00 0.00 3.33
474 482 4.243270 AGTTATCTACAGTGCGAACCAAC 58.757 43.478 0.00 0.00 0.00 3.77
475 483 4.530710 AGTTATCTACAGTGCGAACCAA 57.469 40.909 0.00 0.00 0.00 3.67
476 484 4.530710 AAGTTATCTACAGTGCGAACCA 57.469 40.909 0.00 0.00 0.00 3.67
477 485 5.407387 TCAAAAGTTATCTACAGTGCGAACC 59.593 40.000 0.00 0.00 0.00 3.62
478 486 6.462073 TCAAAAGTTATCTACAGTGCGAAC 57.538 37.500 0.00 0.00 0.00 3.95
479 487 6.871492 TGATCAAAAGTTATCTACAGTGCGAA 59.129 34.615 0.00 0.00 0.00 4.70
480 488 6.310467 GTGATCAAAAGTTATCTACAGTGCGA 59.690 38.462 0.00 0.00 0.00 5.10
481 489 6.090763 TGTGATCAAAAGTTATCTACAGTGCG 59.909 38.462 0.00 0.00 0.00 5.34
482 490 7.364522 TGTGATCAAAAGTTATCTACAGTGC 57.635 36.000 0.00 0.00 0.00 4.40
483 491 9.764870 CAATGTGATCAAAAGTTATCTACAGTG 57.235 33.333 0.00 0.00 30.72 3.66
528 536 8.691797 GTCAGGCCATTTAAGGTTCATATTTTA 58.308 33.333 5.01 0.00 0.00 1.52
551 559 3.251972 TGCATGCAATTTCACTAACGTCA 59.748 39.130 20.30 0.00 0.00 4.35
604 612 2.113860 TCTATTGTTGACAGCTGGCC 57.886 50.000 19.23 9.36 0.00 5.36
752 761 0.110486 TCCTCCCACCTTTGCTTGAC 59.890 55.000 0.00 0.00 0.00 3.18
854 863 2.194597 GGTGTTGGTGGCTGTGGA 59.805 61.111 0.00 0.00 0.00 4.02
867 876 1.844130 GAAGGGAAGGTGGTGGTGT 59.156 57.895 0.00 0.00 0.00 4.16
936 945 0.652592 GAATGTCGCAGGATCAACCG 59.347 55.000 0.00 0.00 44.74 4.44
1050 1060 1.302285 CTTGCTGTCCCAGGCATCT 59.698 57.895 0.00 0.00 38.30 2.90
1053 1063 3.970410 CCCTTGCTGTCCCAGGCA 61.970 66.667 0.00 0.00 36.62 4.75
1137 1147 1.513373 CGTCGTCATCCGCTCGAAA 60.513 57.895 0.00 0.00 36.36 3.46
1174 1184 1.374885 CGGTCATGTACGGCACCAA 60.375 57.895 7.48 0.00 0.00 3.67
1364 1374 1.451927 GTCGCTGATGGGGCAATGA 60.452 57.895 0.00 0.00 0.00 2.57
1371 1381 1.672030 TGCAACTGTCGCTGATGGG 60.672 57.895 0.00 0.00 0.00 4.00
1393 1403 8.613060 AGTTAGTACGTACATATAGCTGCTAA 57.387 34.615 26.55 9.97 0.00 3.09
1400 1410 6.145807 ACGCGAGTTAGTACGTACATATAG 57.854 41.667 26.55 13.93 46.40 1.31
2059 2146 4.280929 TCTCTGCTGCTTAGTTTGTCAGTA 59.719 41.667 0.00 0.00 0.00 2.74
2089 2176 5.374071 GGATAATAAAATGGAGGTGGACGT 58.626 41.667 0.00 0.00 0.00 4.34
2156 2362 7.068348 GTCCACAGAAGAATATGACTACTGGTA 59.932 40.741 0.00 0.00 0.00 3.25
2159 2365 6.127338 TGGTCCACAGAAGAATATGACTACTG 60.127 42.308 0.00 0.00 0.00 2.74
2175 2718 2.800544 CAGAGTACGTTTTGGTCCACAG 59.199 50.000 0.00 0.00 0.00 3.66
2186 2729 5.065602 TCAACATATCGTAGCAGAGTACGTT 59.934 40.000 0.00 0.00 44.94 3.99
2315 3183 7.672983 TTCATCACTAAACTGAAGATCAACC 57.327 36.000 0.00 0.00 0.00 3.77
2374 3321 5.565509 TGTACATGACAAGCCATCCTTTTA 58.434 37.500 0.00 0.00 34.15 1.52
2379 3326 6.183360 GCATATATGTACATGACAAGCCATCC 60.183 42.308 18.81 0.00 42.78 3.51
2380 3327 6.372381 TGCATATATGTACATGACAAGCCATC 59.628 38.462 18.81 0.00 42.78 3.51
2390 4581 9.526713 GTCTAGGAATCTGCATATATGTACATG 57.473 37.037 18.81 4.15 0.00 3.21
2647 4843 1.985116 GAAGACGGTGAGGGAGCCT 60.985 63.158 0.00 0.00 36.03 4.58
2830 5026 2.261671 GACGATGTGAGGCGGTGT 59.738 61.111 0.00 0.00 0.00 4.16
2842 5038 2.283676 ACCCCGTGAGTGGACGAT 60.284 61.111 0.00 0.00 42.10 3.73
2962 5179 2.357569 GCTCATGGTCTTCATCCCCTTT 60.358 50.000 0.00 0.00 32.92 3.11
3297 5514 4.812091 ACTATACACACACACAAGCGAAAA 59.188 37.500 0.00 0.00 0.00 2.29
3301 5518 3.057019 ACACTATACACACACACAAGCG 58.943 45.455 0.00 0.00 0.00 4.68
3302 5519 6.367695 TCAATACACTATACACACACACAAGC 59.632 38.462 0.00 0.00 0.00 4.01
3305 5522 6.988522 AGTCAATACACTATACACACACACA 58.011 36.000 0.00 0.00 0.00 3.72
3308 5525 7.884816 ACAAGTCAATACACTATACACACAC 57.115 36.000 0.00 0.00 0.00 3.82
3316 5533 8.682710 ACACACAAAAACAAGTCAATACACTAT 58.317 29.630 0.00 0.00 0.00 2.12
3317 5534 8.046294 ACACACAAAAACAAGTCAATACACTA 57.954 30.769 0.00 0.00 0.00 2.74
3318 5535 6.919721 ACACACAAAAACAAGTCAATACACT 58.080 32.000 0.00 0.00 0.00 3.55
3364 5585 4.202182 TGAGGATACGTATACCTTGCCAAC 60.202 45.833 20.50 11.59 46.39 3.77
3393 5614 7.820386 ACATGTACAAATAAACTCCATGTACGA 59.180 33.333 0.00 1.34 45.74 3.43
3394 5615 7.902917 CACATGTACAAATAAACTCCATGTACG 59.097 37.037 0.00 0.00 45.74 3.67
3401 5622 7.338449 ACATACCCACATGTACAAATAAACTCC 59.662 37.037 0.00 0.00 37.37 3.85
3425 5646 7.546316 CCGTTTAAGGAAAAGGAAAAGAAAACA 59.454 33.333 0.00 0.00 44.41 2.83
3476 5697 8.715998 CAGCATCGATTGAGTTATAGCTATTTT 58.284 33.333 12.39 0.00 0.00 1.82
3505 5726 6.345096 AGGAAAAGAAAACATACCCACATG 57.655 37.500 0.00 0.00 0.00 3.21
3506 5727 6.994421 AAGGAAAAGAAAACATACCCACAT 57.006 33.333 0.00 0.00 0.00 3.21
3507 5728 6.800072 AAAGGAAAAGAAAACATACCCACA 57.200 33.333 0.00 0.00 0.00 4.17
3508 5729 6.704493 GGAAAAGGAAAAGAAAACATACCCAC 59.296 38.462 0.00 0.00 0.00 4.61
3510 5731 7.062749 AGGAAAAGGAAAAGAAAACATACCC 57.937 36.000 0.00 0.00 0.00 3.69
3515 5736 8.927721 CGTTTTAAGGAAAAGGAAAAGAAAACA 58.072 29.630 0.00 0.00 41.04 2.83
3516 5737 8.385111 CCGTTTTAAGGAAAAGGAAAAGAAAAC 58.615 33.333 4.82 0.00 46.13 2.43
3517 5738 7.549842 CCCGTTTTAAGGAAAAGGAAAAGAAAA 59.450 33.333 5.27 0.00 46.13 2.29
3518 5739 7.042950 CCCGTTTTAAGGAAAAGGAAAAGAAA 58.957 34.615 5.27 0.00 46.13 2.52
3519 5740 6.154877 ACCCGTTTTAAGGAAAAGGAAAAGAA 59.845 34.615 5.27 0.00 46.13 2.52
3520 5741 5.657745 ACCCGTTTTAAGGAAAAGGAAAAGA 59.342 36.000 5.27 0.00 46.13 2.52
3521 5742 5.909477 ACCCGTTTTAAGGAAAAGGAAAAG 58.091 37.500 5.27 0.00 46.13 2.27
3522 5743 5.936187 ACCCGTTTTAAGGAAAAGGAAAA 57.064 34.783 5.27 0.00 46.13 2.29
3523 5744 5.936187 AACCCGTTTTAAGGAAAAGGAAA 57.064 34.783 5.27 0.00 46.13 3.13
3524 5745 5.662456 CAAACCCGTTTTAAGGAAAAGGAA 58.338 37.500 5.27 0.00 46.13 3.36
3525 5746 4.441773 GCAAACCCGTTTTAAGGAAAAGGA 60.442 41.667 5.27 0.00 46.13 3.36
3526 5747 3.805422 GCAAACCCGTTTTAAGGAAAAGG 59.195 43.478 0.00 0.00 43.82 3.11
3527 5748 4.689071 AGCAAACCCGTTTTAAGGAAAAG 58.311 39.130 0.00 0.00 35.21 2.27
3528 5749 4.739587 AGCAAACCCGTTTTAAGGAAAA 57.260 36.364 0.00 0.00 32.00 2.29
3529 5750 6.408107 AATAGCAAACCCGTTTTAAGGAAA 57.592 33.333 0.00 0.00 0.00 3.13
3530 5751 6.265876 AGAAATAGCAAACCCGTTTTAAGGAA 59.734 34.615 0.00 0.00 0.00 3.36
3531 5752 5.771165 AGAAATAGCAAACCCGTTTTAAGGA 59.229 36.000 0.00 0.00 0.00 3.36
3532 5753 6.020971 AGAAATAGCAAACCCGTTTTAAGG 57.979 37.500 0.00 0.00 0.00 2.69
3533 5754 6.674066 TGAGAAATAGCAAACCCGTTTTAAG 58.326 36.000 0.00 0.00 0.00 1.85
3534 5755 6.636562 TGAGAAATAGCAAACCCGTTTTAA 57.363 33.333 0.00 0.00 0.00 1.52
3535 5756 6.636562 TTGAGAAATAGCAAACCCGTTTTA 57.363 33.333 0.00 0.00 0.00 1.52
3536 5757 5.523438 TTGAGAAATAGCAAACCCGTTTT 57.477 34.783 0.00 0.00 0.00 2.43
3537 5758 5.722021 ATTGAGAAATAGCAAACCCGTTT 57.278 34.783 0.00 0.00 0.00 3.60
3538 5759 5.242838 TCAATTGAGAAATAGCAAACCCGTT 59.757 36.000 3.38 0.00 0.00 4.44
3539 5760 4.764823 TCAATTGAGAAATAGCAAACCCGT 59.235 37.500 3.38 0.00 0.00 5.28
3540 5761 5.095490 GTCAATTGAGAAATAGCAAACCCG 58.905 41.667 8.80 0.00 0.00 5.28
3541 5762 6.071952 TCAGTCAATTGAGAAATAGCAAACCC 60.072 38.462 8.80 0.00 0.00 4.11
3542 5763 6.913170 TCAGTCAATTGAGAAATAGCAAACC 58.087 36.000 8.80 0.00 0.00 3.27
3543 5764 8.801715 TTTCAGTCAATTGAGAAATAGCAAAC 57.198 30.769 8.80 0.00 0.00 2.93
3544 5765 9.814899 TTTTTCAGTCAATTGAGAAATAGCAAA 57.185 25.926 18.34 10.11 29.40 3.68
3545 5766 9.985730 ATTTTTCAGTCAATTGAGAAATAGCAA 57.014 25.926 18.34 12.42 39.01 3.91
3562 5783 9.817809 TCGATTGAGTTATAGCTATTTTTCAGT 57.182 29.630 12.39 9.60 0.00 3.41
3565 5786 9.535270 GCATCGATTGAGTTATAGCTATTTTTC 57.465 33.333 12.39 7.68 0.00 2.29
3566 5787 9.277783 AGCATCGATTGAGTTATAGCTATTTTT 57.722 29.630 12.39 0.00 0.00 1.94
3567 5788 8.715998 CAGCATCGATTGAGTTATAGCTATTTT 58.284 33.333 12.39 0.00 0.00 1.82
3568 5789 7.875041 ACAGCATCGATTGAGTTATAGCTATTT 59.125 33.333 12.39 0.00 0.00 1.40
3569 5790 7.382110 ACAGCATCGATTGAGTTATAGCTATT 58.618 34.615 12.39 0.00 0.00 1.73
3570 5791 6.929625 ACAGCATCGATTGAGTTATAGCTAT 58.070 36.000 11.77 11.77 0.00 2.97
3571 5792 6.332735 ACAGCATCGATTGAGTTATAGCTA 57.667 37.500 4.12 0.00 0.00 3.32
3572 5793 5.207110 ACAGCATCGATTGAGTTATAGCT 57.793 39.130 4.12 0.00 0.00 3.32
3573 5794 5.920840 TGTACAGCATCGATTGAGTTATAGC 59.079 40.000 4.12 0.00 0.00 2.97
3574 5795 7.596621 ACATGTACAGCATCGATTGAGTTATAG 59.403 37.037 0.00 0.00 35.19 1.31
3575 5796 7.382218 CACATGTACAGCATCGATTGAGTTATA 59.618 37.037 0.00 0.00 35.19 0.98
3576 5797 6.201615 CACATGTACAGCATCGATTGAGTTAT 59.798 38.462 0.00 0.00 35.19 1.89
3577 5798 5.519927 CACATGTACAGCATCGATTGAGTTA 59.480 40.000 0.00 0.00 35.19 2.24
3578 5799 4.330894 CACATGTACAGCATCGATTGAGTT 59.669 41.667 0.00 0.00 35.19 3.01
3579 5800 3.867493 CACATGTACAGCATCGATTGAGT 59.133 43.478 0.00 1.86 35.19 3.41
3580 5801 3.246936 CCACATGTACAGCATCGATTGAG 59.753 47.826 0.00 0.00 35.19 3.02
3581 5802 3.197265 CCACATGTACAGCATCGATTGA 58.803 45.455 0.00 0.00 35.19 2.57
3582 5803 2.288729 CCCACATGTACAGCATCGATTG 59.711 50.000 0.00 0.00 35.19 2.67
3583 5804 2.092968 ACCCACATGTACAGCATCGATT 60.093 45.455 0.00 0.00 35.19 3.34
3584 5805 1.486310 ACCCACATGTACAGCATCGAT 59.514 47.619 0.00 0.00 35.19 3.59
3585 5806 0.901827 ACCCACATGTACAGCATCGA 59.098 50.000 0.00 0.00 35.19 3.59
3586 5807 2.595124 TACCCACATGTACAGCATCG 57.405 50.000 0.00 0.00 35.19 3.84
3587 5808 3.808728 ACATACCCACATGTACAGCATC 58.191 45.455 0.00 0.00 37.37 3.91
3588 5809 3.931907 ACATACCCACATGTACAGCAT 57.068 42.857 0.00 0.00 37.37 3.79
3589 5810 3.712016 AACATACCCACATGTACAGCA 57.288 42.857 0.00 0.00 38.19 4.41
3590 5811 4.700213 AGAAAACATACCCACATGTACAGC 59.300 41.667 0.00 0.00 38.19 4.40
3591 5812 6.817765 AAGAAAACATACCCACATGTACAG 57.182 37.500 0.00 0.00 38.19 2.74
3592 5813 7.255660 GGAAAAGAAAACATACCCACATGTACA 60.256 37.037 0.00 0.00 38.19 2.90
3593 5814 7.039993 AGGAAAAGAAAACATACCCACATGTAC 60.040 37.037 0.00 0.00 38.19 2.90
3594 5815 7.007723 AGGAAAAGAAAACATACCCACATGTA 58.992 34.615 0.00 0.00 38.19 2.29
3595 5816 5.838521 AGGAAAAGAAAACATACCCACATGT 59.161 36.000 0.00 0.00 40.90 3.21
3596 5817 6.345096 AGGAAAAGAAAACATACCCACATG 57.655 37.500 0.00 0.00 0.00 3.21
3597 5818 6.994421 AAGGAAAAGAAAACATACCCACAT 57.006 33.333 0.00 0.00 0.00 3.21
3598 5819 6.800072 AAAGGAAAAGAAAACATACCCACA 57.200 33.333 0.00 0.00 0.00 4.17
3599 5820 6.704493 GGAAAAGGAAAAGAAAACATACCCAC 59.296 38.462 0.00 0.00 0.00 4.61
3600 5821 6.613679 AGGAAAAGGAAAAGAAAACATACCCA 59.386 34.615 0.00 0.00 0.00 4.51
3601 5822 7.062749 AGGAAAAGGAAAAGAAAACATACCC 57.937 36.000 0.00 0.00 0.00 3.69
3605 5826 9.093970 CGTTTAAGGAAAAGGAAAAGAAAACAT 57.906 29.630 0.00 0.00 35.42 2.71
3606 5827 7.546316 CCGTTTAAGGAAAAGGAAAAGAAAACA 59.454 33.333 0.00 0.00 44.41 2.83
3607 5828 7.010738 CCCGTTTAAGGAAAAGGAAAAGAAAAC 59.989 37.037 4.25 0.00 44.41 2.43
3608 5829 7.042950 CCCGTTTAAGGAAAAGGAAAAGAAAA 58.957 34.615 4.25 0.00 44.41 2.29
3609 5830 6.154877 ACCCGTTTAAGGAAAAGGAAAAGAAA 59.845 34.615 4.25 0.00 44.41 2.52
3610 5831 5.657745 ACCCGTTTAAGGAAAAGGAAAAGAA 59.342 36.000 4.25 0.00 44.41 2.52
3611 5832 5.202765 ACCCGTTTAAGGAAAAGGAAAAGA 58.797 37.500 4.25 0.00 44.41 2.52
3612 5833 5.524971 ACCCGTTTAAGGAAAAGGAAAAG 57.475 39.130 4.25 0.00 44.41 2.27
3613 5834 5.936187 AACCCGTTTAAGGAAAAGGAAAA 57.064 34.783 4.25 0.00 44.41 2.29
3614 5835 5.662456 CAAACCCGTTTAAGGAAAAGGAAA 58.338 37.500 4.25 0.00 44.41 3.13
3615 5836 4.441773 GCAAACCCGTTTAAGGAAAAGGAA 60.442 41.667 4.25 0.00 44.41 3.36
3616 5837 3.068448 GCAAACCCGTTTAAGGAAAAGGA 59.932 43.478 4.25 0.00 44.41 3.36
3617 5838 3.069016 AGCAAACCCGTTTAAGGAAAAGG 59.931 43.478 0.00 0.00 42.13 3.11
3618 5839 4.316205 AGCAAACCCGTTTAAGGAAAAG 57.684 40.909 0.00 0.00 0.00 2.27
3619 5840 6.408107 AATAGCAAACCCGTTTAAGGAAAA 57.592 33.333 0.00 0.00 0.00 2.29
3620 5841 5.047872 GGAATAGCAAACCCGTTTAAGGAAA 60.048 40.000 0.00 0.00 0.00 3.13
3621 5842 4.460034 GGAATAGCAAACCCGTTTAAGGAA 59.540 41.667 0.00 0.00 0.00 3.36
3622 5843 4.011698 GGAATAGCAAACCCGTTTAAGGA 58.988 43.478 0.00 0.00 0.00 3.36
3623 5844 4.014406 AGGAATAGCAAACCCGTTTAAGG 58.986 43.478 0.00 0.00 0.00 2.69
3624 5845 5.638596 AAGGAATAGCAAACCCGTTTAAG 57.361 39.130 0.00 0.00 0.00 1.85
3625 5846 7.369607 GTTTAAGGAATAGCAAACCCGTTTAA 58.630 34.615 0.00 0.00 0.00 1.52
3626 5847 6.348376 CGTTTAAGGAATAGCAAACCCGTTTA 60.348 38.462 0.00 0.00 0.00 2.01
3627 5848 5.563280 CGTTTAAGGAATAGCAAACCCGTTT 60.563 40.000 0.00 0.00 0.00 3.60
3628 5849 4.083164 CGTTTAAGGAATAGCAAACCCGTT 60.083 41.667 0.00 0.00 0.00 4.44
3629 5850 3.437741 CGTTTAAGGAATAGCAAACCCGT 59.562 43.478 0.00 0.00 0.00 5.28
3630 5851 3.181504 CCGTTTAAGGAATAGCAAACCCG 60.182 47.826 0.00 0.00 0.00 5.28
3631 5852 3.129813 CCCGTTTAAGGAATAGCAAACCC 59.870 47.826 0.00 0.00 0.00 4.11
3632 5853 3.760151 ACCCGTTTAAGGAATAGCAAACC 59.240 43.478 0.00 0.00 0.00 3.27
3633 5854 6.094464 ACATACCCGTTTAAGGAATAGCAAAC 59.906 38.462 0.00 0.00 0.00 2.93
3634 5855 6.181908 ACATACCCGTTTAAGGAATAGCAAA 58.818 36.000 0.00 0.00 0.00 3.68
3635 5856 5.747342 ACATACCCGTTTAAGGAATAGCAA 58.253 37.500 0.00 0.00 0.00 3.91
3636 5857 5.362105 ACATACCCGTTTAAGGAATAGCA 57.638 39.130 0.00 0.00 0.00 3.49
3637 5858 6.688637 AAACATACCCGTTTAAGGAATAGC 57.311 37.500 0.00 0.00 37.33 2.97
3638 5859 8.502105 AGAAAACATACCCGTTTAAGGAATAG 57.498 34.615 0.00 0.00 38.13 1.73
3639 5860 8.866970 AAGAAAACATACCCGTTTAAGGAATA 57.133 30.769 0.00 0.00 38.13 1.75
3640 5861 7.770366 AAGAAAACATACCCGTTTAAGGAAT 57.230 32.000 0.00 0.00 38.13 3.01
3641 5862 7.585579 AAAGAAAACATACCCGTTTAAGGAA 57.414 32.000 0.00 0.00 38.13 3.36
3642 5863 7.255555 GGAAAAGAAAACATACCCGTTTAAGGA 60.256 37.037 0.00 0.00 38.13 3.36
3643 5864 6.864685 GGAAAAGAAAACATACCCGTTTAAGG 59.135 38.462 0.00 0.00 38.13 2.69
3644 5865 7.654568 AGGAAAAGAAAACATACCCGTTTAAG 58.345 34.615 0.00 0.00 38.13 1.85
3645 5866 7.585579 AGGAAAAGAAAACATACCCGTTTAA 57.414 32.000 0.00 0.00 38.13 1.52
3646 5867 7.585579 AAGGAAAAGAAAACATACCCGTTTA 57.414 32.000 0.00 0.00 38.13 2.01
3647 5868 6.474140 AAGGAAAAGAAAACATACCCGTTT 57.526 33.333 0.00 0.00 40.79 3.60
3648 5869 6.474140 AAAGGAAAAGAAAACATACCCGTT 57.526 33.333 0.00 0.00 0.00 4.44
3649 5870 6.474140 AAAAGGAAAAGAAAACATACCCGT 57.526 33.333 0.00 0.00 0.00 5.28
3650 5871 5.627780 CGAAAAGGAAAAGAAAACATACCCG 59.372 40.000 0.00 0.00 0.00 5.28
3651 5872 6.509656 ACGAAAAGGAAAAGAAAACATACCC 58.490 36.000 0.00 0.00 0.00 3.69
3652 5873 7.997107 AACGAAAAGGAAAAGAAAACATACC 57.003 32.000 0.00 0.00 0.00 2.73
3653 5874 9.895894 GAAAACGAAAAGGAAAAGAAAACATAC 57.104 29.630 0.00 0.00 0.00 2.39
3654 5875 9.863845 AGAAAACGAAAAGGAAAAGAAAACATA 57.136 25.926 0.00 0.00 0.00 2.29
3655 5876 8.771920 AGAAAACGAAAAGGAAAAGAAAACAT 57.228 26.923 0.00 0.00 0.00 2.71
3656 5877 8.596271 AAGAAAACGAAAAGGAAAAGAAAACA 57.404 26.923 0.00 0.00 0.00 2.83
3657 5878 9.872757 AAAAGAAAACGAAAAGGAAAAGAAAAC 57.127 25.926 0.00 0.00 0.00 2.43
3659 5880 8.714179 GGAAAAGAAAACGAAAAGGAAAAGAAA 58.286 29.630 0.00 0.00 0.00 2.52
3660 5881 8.092068 AGGAAAAGAAAACGAAAAGGAAAAGAA 58.908 29.630 0.00 0.00 0.00 2.52
3661 5882 7.608153 AGGAAAAGAAAACGAAAAGGAAAAGA 58.392 30.769 0.00 0.00 0.00 2.52
3662 5883 7.827819 AGGAAAAGAAAACGAAAAGGAAAAG 57.172 32.000 0.00 0.00 0.00 2.27
3663 5884 8.610248 AAAGGAAAAGAAAACGAAAAGGAAAA 57.390 26.923 0.00 0.00 0.00 2.29
3664 5885 8.610248 AAAAGGAAAAGAAAACGAAAAGGAAA 57.390 26.923 0.00 0.00 0.00 3.13
3665 5886 7.332430 GGAAAAGGAAAAGAAAACGAAAAGGAA 59.668 33.333 0.00 0.00 0.00 3.36
3666 5887 6.814644 GGAAAAGGAAAAGAAAACGAAAAGGA 59.185 34.615 0.00 0.00 0.00 3.36
3667 5888 6.816640 AGGAAAAGGAAAAGAAAACGAAAAGG 59.183 34.615 0.00 0.00 0.00 3.11
3668 5889 7.827819 AGGAAAAGGAAAAGAAAACGAAAAG 57.172 32.000 0.00 0.00 0.00 2.27
3669 5890 9.708092 TTAAGGAAAAGGAAAAGAAAACGAAAA 57.292 25.926 0.00 0.00 0.00 2.29
3670 5891 9.708092 TTTAAGGAAAAGGAAAAGAAAACGAAA 57.292 25.926 0.00 0.00 0.00 3.46
3671 5892 9.142515 GTTTAAGGAAAAGGAAAAGAAAACGAA 57.857 29.630 0.00 0.00 0.00 3.85
3672 5893 7.485595 CGTTTAAGGAAAAGGAAAAGAAAACGA 59.514 33.333 0.00 0.00 44.74 3.85
3673 5894 7.253850 CCGTTTAAGGAAAAGGAAAAGAAAACG 60.254 37.037 0.00 0.00 44.41 3.60
3674 5895 7.010738 CCCGTTTAAGGAAAAGGAAAAGAAAAC 59.989 37.037 4.25 0.00 44.41 2.43
3675 5896 7.042950 CCCGTTTAAGGAAAAGGAAAAGAAAA 58.957 34.615 4.25 0.00 44.41 2.29
3676 5897 6.154877 ACCCGTTTAAGGAAAAGGAAAAGAAA 59.845 34.615 4.25 0.00 44.41 2.52
3677 5898 5.657745 ACCCGTTTAAGGAAAAGGAAAAGAA 59.342 36.000 4.25 0.00 44.41 2.52
3678 5899 5.202765 ACCCGTTTAAGGAAAAGGAAAAGA 58.797 37.500 4.25 0.00 44.41 2.52
3679 5900 5.524971 ACCCGTTTAAGGAAAAGGAAAAG 57.475 39.130 4.25 0.00 44.41 2.27
3680 5901 5.936187 AACCCGTTTAAGGAAAAGGAAAA 57.064 34.783 4.25 0.00 44.41 2.29
3681 5902 5.936187 AAACCCGTTTAAGGAAAAGGAAA 57.064 34.783 4.25 0.00 44.41 3.13
3682 5903 7.600231 AATAAACCCGTTTAAGGAAAAGGAA 57.400 32.000 4.26 0.00 44.41 3.36
3683 5904 7.069702 ACAAATAAACCCGTTTAAGGAAAAGGA 59.930 33.333 4.26 0.00 44.41 3.36
3684 5905 7.170151 CACAAATAAACCCGTTTAAGGAAAAGG 59.830 37.037 4.26 0.00 42.13 3.11
3685 5906 7.170151 CCACAAATAAACCCGTTTAAGGAAAAG 59.830 37.037 4.26 0.00 38.38 2.27
3686 5907 6.985059 CCACAAATAAACCCGTTTAAGGAAAA 59.015 34.615 4.26 0.00 38.38 2.29
3687 5908 6.323225 TCCACAAATAAACCCGTTTAAGGAAA 59.677 34.615 4.26 0.00 38.38 3.13
3688 5909 5.832060 TCCACAAATAAACCCGTTTAAGGAA 59.168 36.000 4.26 0.00 38.38 3.36
3689 5910 5.383476 TCCACAAATAAACCCGTTTAAGGA 58.617 37.500 4.26 5.01 38.38 3.36
3690 5911 5.708877 TCCACAAATAAACCCGTTTAAGG 57.291 39.130 4.26 3.14 38.38 2.69
3691 5912 9.863845 AATAATCCACAAATAAACCCGTTTAAG 57.136 29.630 4.26 1.51 38.38 1.85
3692 5913 9.857957 GAATAATCCACAAATAAACCCGTTTAA 57.142 29.630 4.26 0.00 38.38 1.52
3693 5914 9.021807 TGAATAATCCACAAATAAACCCGTTTA 57.978 29.630 2.68 2.68 39.12 2.01
3694 5915 7.815549 GTGAATAATCCACAAATAAACCCGTTT 59.184 33.333 0.00 0.00 34.81 3.60
3695 5916 7.317390 GTGAATAATCCACAAATAAACCCGTT 58.683 34.615 0.00 0.00 34.81 4.44
3696 5917 6.403855 CGTGAATAATCCACAAATAAACCCGT 60.404 38.462 0.00 0.00 34.36 5.28
3697 5918 5.968848 CGTGAATAATCCACAAATAAACCCG 59.031 40.000 0.00 0.00 34.36 5.28
3698 5919 6.859017 ACGTGAATAATCCACAAATAAACCC 58.141 36.000 0.00 0.00 34.36 4.11
3699 5920 6.685403 CGACGTGAATAATCCACAAATAAACC 59.315 38.462 0.00 0.00 34.36 3.27
3700 5921 7.215568 CACGACGTGAATAATCCACAAATAAAC 59.784 37.037 23.39 0.00 35.23 2.01
3701 5922 7.237871 CACGACGTGAATAATCCACAAATAAA 58.762 34.615 23.39 0.00 35.23 1.40
3702 5923 6.673556 GCACGACGTGAATAATCCACAAATAA 60.674 38.462 31.08 0.00 35.23 1.40
3703 5924 5.220510 GCACGACGTGAATAATCCACAAATA 60.221 40.000 31.08 0.00 35.23 1.40
3704 5925 4.436852 GCACGACGTGAATAATCCACAAAT 60.437 41.667 31.08 0.00 35.23 2.32
3705 5926 3.120477 GCACGACGTGAATAATCCACAAA 60.120 43.478 31.08 0.00 35.23 2.83
3706 5927 2.413796 GCACGACGTGAATAATCCACAA 59.586 45.455 31.08 0.00 35.23 3.33
3707 5928 1.996898 GCACGACGTGAATAATCCACA 59.003 47.619 31.08 0.00 35.23 4.17
3708 5929 2.268298 AGCACGACGTGAATAATCCAC 58.732 47.619 31.08 10.02 35.23 4.02
3709 5930 2.665649 AGCACGACGTGAATAATCCA 57.334 45.000 31.08 0.00 35.23 3.41
3739 5960 9.774413 AACGGAGAATAGAAAAGAAAAACTAGA 57.226 29.630 0.00 0.00 0.00 2.43
3742 5963 7.501225 TGGAACGGAGAATAGAAAAGAAAAACT 59.499 33.333 0.00 0.00 0.00 2.66
3743 5964 7.645402 TGGAACGGAGAATAGAAAAGAAAAAC 58.355 34.615 0.00 0.00 0.00 2.43
3757 5980 5.470777 ACGACATTTATTTTGGAACGGAGAA 59.529 36.000 0.00 0.00 0.00 2.87
3762 5987 4.789784 ACCACGACATTTATTTTGGAACG 58.210 39.130 0.00 0.00 0.00 3.95
3775 6000 9.401873 GTTTAATTTAAGCTAAAACCACGACAT 57.598 29.630 0.00 0.00 0.00 3.06
3804 6029 6.723515 AGAGCTATTGTATAGCATCAAGAGGA 59.276 38.462 18.02 0.00 42.68 3.71
3820 6045 9.383519 TGGAATTTGACTTAGTTAGAGCTATTG 57.616 33.333 0.00 0.00 0.00 1.90
3857 6082 9.705290 AGTGAAAAATAAAAAGGCATATCGTTT 57.295 25.926 0.00 0.00 34.56 3.60
3860 6085 8.586273 CACAGTGAAAAATAAAAAGGCATATCG 58.414 33.333 0.00 0.00 0.00 2.92
3861 6086 9.638239 TCACAGTGAAAAATAAAAAGGCATATC 57.362 29.630 0.00 0.00 0.00 1.63
3879 6104 5.008019 GCATTGAGAGAAGTTTTCACAGTGA 59.992 40.000 16.33 0.00 0.00 3.41
3883 6108 6.455360 AAAGCATTGAGAGAAGTTTTCACA 57.545 33.333 0.00 0.00 0.00 3.58
3897 6122 5.505181 AGGAAAGACTAGGAAAGCATTGA 57.495 39.130 0.00 0.00 0.00 2.57
3898 6123 6.581171 AAAGGAAAGACTAGGAAAGCATTG 57.419 37.500 0.00 0.00 0.00 2.82
3899 6124 7.522236 CGAAAAAGGAAAGACTAGGAAAGCATT 60.522 37.037 0.00 0.00 0.00 3.56
3900 6125 6.072452 CGAAAAAGGAAAGACTAGGAAAGCAT 60.072 38.462 0.00 0.00 0.00 3.79
3901 6126 5.238650 CGAAAAAGGAAAGACTAGGAAAGCA 59.761 40.000 0.00 0.00 0.00 3.91
3902 6127 5.469084 TCGAAAAAGGAAAGACTAGGAAAGC 59.531 40.000 0.00 0.00 0.00 3.51
3904 6129 6.589135 AGTCGAAAAAGGAAAGACTAGGAAA 58.411 36.000 0.00 0.00 40.00 3.13
3906 6131 5.803237 AGTCGAAAAAGGAAAGACTAGGA 57.197 39.130 0.00 0.00 40.00 2.94
3909 6134 4.514066 GGCAAGTCGAAAAAGGAAAGACTA 59.486 41.667 0.00 0.00 40.80 2.59
3913 6138 3.550842 CCAGGCAAGTCGAAAAAGGAAAG 60.551 47.826 0.00 0.00 0.00 2.62
3917 6142 1.318576 ACCAGGCAAGTCGAAAAAGG 58.681 50.000 0.00 0.00 0.00 3.11
3923 6148 0.389817 CGATCAACCAGGCAAGTCGA 60.390 55.000 0.00 0.00 0.00 4.20
3924 6149 0.670546 ACGATCAACCAGGCAAGTCG 60.671 55.000 0.00 3.99 0.00 4.18
3929 6154 1.080093 GTCGACGATCAACCAGGCA 60.080 57.895 0.00 0.00 0.00 4.75
3930 6155 1.810030 GGTCGACGATCAACCAGGC 60.810 63.158 9.92 0.00 33.11 4.85
3931 6156 0.246635 AAGGTCGACGATCAACCAGG 59.753 55.000 11.33 0.00 35.43 4.45
3943 6168 4.271696 AGTCACAATGAATGAAGGTCGA 57.728 40.909 0.00 0.00 0.00 4.20
3945 6170 5.471456 ACAGAAGTCACAATGAATGAAGGTC 59.529 40.000 0.00 0.00 0.00 3.85
3948 6173 5.628193 GCAACAGAAGTCACAATGAATGAAG 59.372 40.000 0.00 0.00 0.00 3.02
3963 6188 2.293122 TGGTTTGATTCCGCAACAGAAG 59.707 45.455 0.00 0.00 0.00 2.85
3965 6190 1.974265 TGGTTTGATTCCGCAACAGA 58.026 45.000 0.00 0.00 0.00 3.41
3966 6191 3.689161 TCTATGGTTTGATTCCGCAACAG 59.311 43.478 0.00 0.00 0.00 3.16
3972 6197 4.747108 CACTAGCTCTATGGTTTGATTCCG 59.253 45.833 0.00 0.00 0.00 4.30
3991 6216 4.399618 GGACTGTAGATCTCAGTTGCACTA 59.600 45.833 21.24 0.00 44.68 2.74
3993 6218 3.516615 GGACTGTAGATCTCAGTTGCAC 58.483 50.000 21.24 12.62 44.68 4.57
3996 6221 4.691175 CATGGGACTGTAGATCTCAGTTG 58.309 47.826 21.24 14.74 44.68 3.16
3999 6224 2.288091 CGCATGGGACTGTAGATCTCAG 60.288 54.545 16.13 16.13 38.68 3.35
4006 6231 1.732259 GTTTCACGCATGGGACTGTAG 59.268 52.381 17.76 0.00 0.00 2.74
4009 6234 2.093306 TAGTTTCACGCATGGGACTG 57.907 50.000 17.76 5.38 0.00 3.51
4014 6239 3.334691 TCCTCTTTAGTTTCACGCATGG 58.665 45.455 0.00 0.00 0.00 3.66
4044 6269 2.449518 TGGTTGGTGGGGCAGAGA 60.450 61.111 0.00 0.00 0.00 3.10
4051 6276 1.358152 TCTAGGTTCTGGTTGGTGGG 58.642 55.000 0.00 0.00 0.00 4.61
4073 6298 5.700832 TGTGTCAAATCAGGTGTGAAGTATC 59.299 40.000 0.00 0.00 35.88 2.24
4075 6300 5.029807 TGTGTCAAATCAGGTGTGAAGTA 57.970 39.130 0.00 0.00 35.88 2.24
4076 6301 3.879295 CTGTGTCAAATCAGGTGTGAAGT 59.121 43.478 0.00 0.00 35.88 3.01
4077 6302 3.251729 CCTGTGTCAAATCAGGTGTGAAG 59.748 47.826 3.38 0.00 44.19 3.02
4099 6324 8.306680 TGACAAGCAGTGTTTTTAGTCTATAC 57.693 34.615 9.16 0.00 41.96 1.47
4102 6327 7.618502 TTTGACAAGCAGTGTTTTTAGTCTA 57.381 32.000 9.16 1.30 41.96 2.59
4103 6328 6.509418 TTTGACAAGCAGTGTTTTTAGTCT 57.491 33.333 9.16 0.00 41.96 3.24
4120 6345 2.666272 TGGGGTATGTGCTTTTGACA 57.334 45.000 0.00 0.00 0.00 3.58
4126 6351 4.534647 TTCCATATTGGGGTATGTGCTT 57.465 40.909 0.00 0.00 38.32 3.91
4170 6397 1.141665 CACGATGCGGATGACCAGA 59.858 57.895 0.00 0.00 35.59 3.86
4172 6399 2.178876 AACCACGATGCGGATGACCA 62.179 55.000 0.00 0.00 35.59 4.02
4180 6407 3.444916 ACAATACTAGAACCACGATGCG 58.555 45.455 0.00 0.00 0.00 4.73
4207 6434 5.279456 GCCTAGATCTCAAATTCTCTCCCTC 60.279 48.000 0.00 0.00 0.00 4.30
4215 6442 3.988819 AGAGCGCCTAGATCTCAAATTC 58.011 45.455 2.29 0.00 42.92 2.17
4216 6443 4.414337 AAGAGCGCCTAGATCTCAAATT 57.586 40.909 2.29 0.00 46.24 1.82
4224 6451 4.672587 TGTTATCAAAGAGCGCCTAGAT 57.327 40.909 2.29 10.66 0.00 1.98
4232 6459 7.461938 GCGTGAAAATTCATGTTATCAAAGAGC 60.462 37.037 14.87 0.00 44.17 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.