Multiple sequence alignment - TraesCS1D01G213800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G213800 chr1D 100.000 3362 0 0 1 3362 298938641 298942002 0.000000e+00 6209.0
1 TraesCS1D01G213800 chr1D 85.897 78 6 3 809 881 11686668 11686591 1.000000e-10 78.7
2 TraesCS1D01G213800 chr1D 91.837 49 2 2 901 948 298939495 298939542 2.160000e-07 67.6
3 TraesCS1D01G213800 chr1D 91.837 49 2 2 855 902 298939541 298939588 2.160000e-07 67.6
4 TraesCS1D01G213800 chr1D 78.218 101 21 1 3106 3205 448077134 448077234 2.800000e-06 63.9
5 TraesCS1D01G213800 chr1B 97.386 1645 25 7 903 2540 402798185 402799818 0.000000e+00 2784.0
6 TraesCS1D01G213800 chr1B 95.680 463 18 2 424 884 402797262 402797724 0.000000e+00 743.0
7 TraesCS1D01G213800 chr1B 72.619 252 54 13 3109 3355 586288032 586288273 6.020000e-08 69.4
8 TraesCS1D01G213800 chr1A 96.650 1642 43 6 908 2540 372909481 372911119 0.000000e+00 2717.0
9 TraesCS1D01G213800 chr1A 90.123 810 51 8 2555 3362 372911169 372911951 0.000000e+00 1026.0
10 TraesCS1D01G213800 chr1A 78.571 140 27 3 3119 3256 558610144 558610006 4.620000e-14 89.8
11 TraesCS1D01G213800 chr4B 80.250 1281 229 19 1076 2347 9691123 9692388 0.000000e+00 942.0
12 TraesCS1D01G213800 chr4B 79.851 134 25 2 3126 3258 16805910 16805778 2.760000e-16 97.1
13 TraesCS1D01G213800 chr4B 88.710 62 7 0 550 611 174357288 174357227 3.600000e-10 76.8
14 TraesCS1D01G213800 chr4D 80.156 1285 225 24 1076 2348 5566963 5568229 0.000000e+00 933.0
15 TraesCS1D01G213800 chr4D 94.178 292 17 0 39 330 320046301 320046592 2.380000e-121 446.0
16 TraesCS1D01G213800 chr4D 84.884 86 12 1 3152 3237 297773590 297773506 5.980000e-13 86.1
17 TraesCS1D01G213800 chr4A 81.575 749 131 6 1604 2347 598045845 598045099 2.220000e-171 612.0
18 TraesCS1D01G213800 chr4A 93.688 301 14 3 39 334 575178758 575178458 2.380000e-121 446.0
19 TraesCS1D01G213800 chr4A 91.379 58 5 0 809 866 617910409 617910466 2.780000e-11 80.5
20 TraesCS1D01G213800 chr4A 85.714 70 10 0 809 878 467293142 467293211 1.290000e-09 75.0
21 TraesCS1D01G213800 chr4A 97.222 36 1 0 573 608 516859649 516859614 1.010000e-05 62.1
22 TraesCS1D01G213800 chr5A 94.863 292 15 0 40 331 59194296 59194587 1.100000e-124 457.0
23 TraesCS1D01G213800 chr5A 88.889 72 6 2 2919 2989 557093526 557093596 1.660000e-13 87.9
24 TraesCS1D01G213800 chr5A 93.478 46 2 1 566 611 465989864 465989820 2.160000e-07 67.6
25 TraesCS1D01G213800 chr7D 94.845 291 15 0 40 330 209496561 209496851 3.950000e-124 455.0
26 TraesCS1D01G213800 chr7D 87.342 79 8 2 521 598 69952555 69952632 4.620000e-14 89.8
27 TraesCS1D01G213800 chr7D 86.667 75 10 0 809 883 457216096 457216170 2.150000e-12 84.2
28 TraesCS1D01G213800 chr7D 87.143 70 9 0 2920 2989 61749907 61749976 2.780000e-11 80.5
29 TraesCS1D01G213800 chr7D 84.810 79 12 0 521 599 70040785 70040863 2.780000e-11 80.5
30 TraesCS1D01G213800 chr3A 94.521 292 15 1 39 329 735847503 735847212 1.840000e-122 449.0
31 TraesCS1D01G213800 chr3A 89.873 79 7 1 333 411 587632908 587632985 2.130000e-17 100.0
32 TraesCS1D01G213800 chr2A 94.792 288 15 0 42 329 677920844 677920557 1.840000e-122 449.0
33 TraesCS1D01G213800 chr6D 94.218 294 16 1 42 334 107805963 107805670 6.620000e-122 448.0
34 TraesCS1D01G213800 chr2D 94.483 290 16 0 40 329 555068776 555069065 6.620000e-122 448.0
35 TraesCS1D01G213800 chr2D 88.571 70 8 0 809 878 131679941 131680010 5.980000e-13 86.1
36 TraesCS1D01G213800 chr2B 94.483 290 16 0 39 328 402035039 402034750 6.620000e-122 448.0
37 TraesCS1D01G213800 chr2B 92.308 65 5 0 814 878 36838995 36839059 3.570000e-15 93.5
38 TraesCS1D01G213800 chr2B 89.394 66 7 0 2922 2987 602231172 602231107 2.150000e-12 84.2
39 TraesCS1D01G213800 chr2B 87.324 71 7 2 2920 2989 148048310 148048379 2.780000e-11 80.5
40 TraesCS1D01G213800 chr2B 75.510 147 24 10 3119 3258 797438117 797438258 1.010000e-05 62.1
41 TraesCS1D01G213800 chr7A 85.393 89 12 1 521 608 579146383 579146471 1.280000e-14 91.6
42 TraesCS1D01G213800 chr7A 88.571 70 8 0 2920 2989 208408596 208408665 5.980000e-13 86.1
43 TraesCS1D01G213800 chr3B 90.769 65 6 0 814 878 53570396 53570332 1.660000e-13 87.9
44 TraesCS1D01G213800 chr3B 88.889 63 6 1 550 611 810770604 810770542 3.600000e-10 76.8
45 TraesCS1D01G213800 chr6A 87.671 73 9 0 2917 2989 436116587 436116659 5.980000e-13 86.1
46 TraesCS1D01G213800 chr6A 91.379 58 5 0 809 866 317796421 317796478 2.780000e-11 80.5
47 TraesCS1D01G213800 chr6A 86.301 73 8 2 2920 2991 60058255 60058326 1.000000e-10 78.7
48 TraesCS1D01G213800 chr7B 86.111 72 8 2 2919 2989 14705907 14705977 3.600000e-10 76.8
49 TraesCS1D01G213800 chr3D 73.874 222 39 16 3109 3323 118311958 118312167 1.670000e-08 71.3
50 TraesCS1D01G213800 chr3D 80.233 86 11 4 3152 3231 291755405 291755490 3.620000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G213800 chr1D 298938641 298942002 3361 False 2114.733333 6209 94.5580 1 3362 3 chr1D.!!$F2 3361
1 TraesCS1D01G213800 chr1B 402797262 402799818 2556 False 1763.500000 2784 96.5330 424 2540 2 chr1B.!!$F2 2116
2 TraesCS1D01G213800 chr1A 372909481 372911951 2470 False 1871.500000 2717 93.3865 908 3362 2 chr1A.!!$F1 2454
3 TraesCS1D01G213800 chr4B 9691123 9692388 1265 False 942.000000 942 80.2500 1076 2347 1 chr4B.!!$F1 1271
4 TraesCS1D01G213800 chr4D 5566963 5568229 1266 False 933.000000 933 80.1560 1076 2348 1 chr4D.!!$F1 1272
5 TraesCS1D01G213800 chr4A 598045099 598045845 746 True 612.000000 612 81.5750 1604 2347 1 chr4A.!!$R3 743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
957 1409 0.038159 CACGAGAACCCCACTCTGTC 60.038 60.0 0.0 0.0 32.87 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2709 3207 1.001158 GATCTAGAGGTAGCACCGTGC 60.001 57.143 16.04 16.04 44.9 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.389925 CTCTGAGGAGCAATCTGGATC 57.610 52.381 0.00 0.00 32.43 3.36
25 26 2.699321 CTCTGAGGAGCAATCTGGATCA 59.301 50.000 0.00 0.00 32.43 2.92
26 27 3.109928 TCTGAGGAGCAATCTGGATCAA 58.890 45.455 0.00 0.00 0.00 2.57
27 28 3.118482 TCTGAGGAGCAATCTGGATCAAC 60.118 47.826 0.00 0.00 0.00 3.18
28 29 2.208431 GAGGAGCAATCTGGATCAACG 58.792 52.381 0.00 0.00 0.00 4.10
29 30 1.833630 AGGAGCAATCTGGATCAACGA 59.166 47.619 0.00 0.00 0.00 3.85
30 31 2.237143 AGGAGCAATCTGGATCAACGAA 59.763 45.455 0.00 0.00 0.00 3.85
31 32 2.352960 GGAGCAATCTGGATCAACGAAC 59.647 50.000 0.00 0.00 0.00 3.95
32 33 3.265791 GAGCAATCTGGATCAACGAACT 58.734 45.455 0.00 0.00 0.00 3.01
33 34 3.265791 AGCAATCTGGATCAACGAACTC 58.734 45.455 0.00 0.00 0.00 3.01
34 35 3.055530 AGCAATCTGGATCAACGAACTCT 60.056 43.478 0.00 0.00 0.00 3.24
35 36 3.686726 GCAATCTGGATCAACGAACTCTT 59.313 43.478 0.00 0.00 0.00 2.85
36 37 4.154918 GCAATCTGGATCAACGAACTCTTT 59.845 41.667 0.00 0.00 0.00 2.52
37 38 5.351465 GCAATCTGGATCAACGAACTCTTTA 59.649 40.000 0.00 0.00 0.00 1.85
38 39 6.673316 GCAATCTGGATCAACGAACTCTTTAC 60.673 42.308 0.00 0.00 0.00 2.01
39 40 5.723672 TCTGGATCAACGAACTCTTTACT 57.276 39.130 0.00 0.00 0.00 2.24
40 41 6.829229 TCTGGATCAACGAACTCTTTACTA 57.171 37.500 0.00 0.00 0.00 1.82
41 42 7.223260 TCTGGATCAACGAACTCTTTACTAA 57.777 36.000 0.00 0.00 0.00 2.24
42 43 7.313646 TCTGGATCAACGAACTCTTTACTAAG 58.686 38.462 0.00 0.00 0.00 2.18
43 44 7.176165 TCTGGATCAACGAACTCTTTACTAAGA 59.824 37.037 0.00 0.00 38.06 2.10
44 45 7.088905 TGGATCAACGAACTCTTTACTAAGAC 58.911 38.462 0.00 0.00 35.49 3.01
45 46 7.039923 TGGATCAACGAACTCTTTACTAAGACT 60.040 37.037 0.00 0.00 35.49 3.24
46 47 8.457261 GGATCAACGAACTCTTTACTAAGACTA 58.543 37.037 0.00 0.00 35.49 2.59
47 48 9.493206 GATCAACGAACTCTTTACTAAGACTAG 57.507 37.037 0.00 0.00 35.49 2.57
48 49 7.303998 TCAACGAACTCTTTACTAAGACTAGC 58.696 38.462 0.00 0.00 35.49 3.42
49 50 6.193514 ACGAACTCTTTACTAAGACTAGCC 57.806 41.667 0.00 0.00 35.49 3.93
50 51 5.709164 ACGAACTCTTTACTAAGACTAGCCA 59.291 40.000 0.00 0.00 35.49 4.75
51 52 6.028987 CGAACTCTTTACTAAGACTAGCCAC 58.971 44.000 0.00 0.00 35.49 5.01
52 53 6.349115 CGAACTCTTTACTAAGACTAGCCACA 60.349 42.308 0.00 0.00 35.49 4.17
53 54 6.912951 ACTCTTTACTAAGACTAGCCACAA 57.087 37.500 0.00 0.00 35.49 3.33
54 55 7.483580 ACTCTTTACTAAGACTAGCCACAAT 57.516 36.000 0.00 0.00 35.49 2.71
55 56 7.324178 ACTCTTTACTAAGACTAGCCACAATG 58.676 38.462 0.00 0.00 35.49 2.82
56 57 6.640518 TCTTTACTAAGACTAGCCACAATGG 58.359 40.000 0.00 0.00 36.67 3.16
57 58 3.914426 ACTAAGACTAGCCACAATGGG 57.086 47.619 0.00 0.00 38.19 4.00
58 59 6.576442 CTTTACTAAGACTAGCCACAATGGGT 60.576 42.308 4.75 4.75 41.62 4.51
59 60 7.364408 CTTTACTAAGACTAGCCACAATGGGTA 60.364 40.741 6.60 6.60 40.28 3.69
70 71 6.560253 GCCACAATGGGTAATAACATAGAG 57.440 41.667 0.00 0.00 38.19 2.43
71 72 6.062095 GCCACAATGGGTAATAACATAGAGT 58.938 40.000 0.00 0.00 38.19 3.24
72 73 7.221450 GCCACAATGGGTAATAACATAGAGTA 58.779 38.462 0.00 0.00 38.19 2.59
73 74 7.387948 GCCACAATGGGTAATAACATAGAGTAG 59.612 40.741 0.00 0.00 38.19 2.57
74 75 8.429641 CCACAATGGGTAATAACATAGAGTAGT 58.570 37.037 0.00 0.00 32.67 2.73
81 82 9.924650 GGGTAATAACATAGAGTAGTAACATGG 57.075 37.037 0.00 0.00 0.00 3.66
82 83 9.924650 GGTAATAACATAGAGTAGTAACATGGG 57.075 37.037 0.00 0.00 0.00 4.00
83 84 9.420551 GTAATAACATAGAGTAGTAACATGGGC 57.579 37.037 0.00 0.00 0.00 5.36
84 85 5.950544 AACATAGAGTAGTAACATGGGCA 57.049 39.130 0.00 0.00 0.00 5.36
85 86 6.500589 AACATAGAGTAGTAACATGGGCAT 57.499 37.500 0.00 0.00 0.00 4.40
86 87 5.858381 ACATAGAGTAGTAACATGGGCATG 58.142 41.667 0.00 0.00 44.15 4.06
100 101 5.858381 CATGGGCATGTTACTACTCTATGT 58.142 41.667 0.00 0.00 34.23 2.29
101 102 5.950544 TGGGCATGTTACTACTCTATGTT 57.049 39.130 0.00 0.00 0.00 2.71
102 103 7.441836 CATGGGCATGTTACTACTCTATGTTA 58.558 38.462 0.00 0.00 34.23 2.41
103 104 6.812998 TGGGCATGTTACTACTCTATGTTAC 58.187 40.000 0.00 0.00 0.00 2.50
104 105 6.610020 TGGGCATGTTACTACTCTATGTTACT 59.390 38.462 0.00 0.00 0.00 2.24
105 106 7.781219 TGGGCATGTTACTACTCTATGTTACTA 59.219 37.037 0.00 0.00 0.00 1.82
106 107 8.081025 GGGCATGTTACTACTCTATGTTACTAC 58.919 40.741 0.00 0.00 0.00 2.73
107 108 8.081025 GGCATGTTACTACTCTATGTTACTACC 58.919 40.741 0.00 0.00 0.00 3.18
108 109 8.848182 GCATGTTACTACTCTATGTTACTACCT 58.152 37.037 0.00 0.00 0.00 3.08
118 119 8.384718 ACTCTATGTTACTACCTCTATAGTGGG 58.615 40.741 21.82 16.23 36.09 4.61
119 120 7.696981 TCTATGTTACTACCTCTATAGTGGGG 58.303 42.308 21.82 16.35 36.09 4.96
120 121 5.999987 TGTTACTACCTCTATAGTGGGGA 57.000 43.478 21.82 11.28 36.09 4.81
121 122 5.950023 TGTTACTACCTCTATAGTGGGGAG 58.050 45.833 21.82 20.04 36.09 4.30
122 123 5.434376 TGTTACTACCTCTATAGTGGGGAGT 59.566 44.000 24.72 24.72 36.09 3.85
123 124 6.621098 TGTTACTACCTCTATAGTGGGGAGTA 59.379 42.308 23.32 23.32 36.09 2.59
124 125 7.129349 TGTTACTACCTCTATAGTGGGGAGTAA 59.871 40.741 28.26 28.26 38.03 2.24
125 126 5.951204 ACTACCTCTATAGTGGGGAGTAAC 58.049 45.833 22.09 0.00 34.02 2.50
126 127 4.894252 ACCTCTATAGTGGGGAGTAACA 57.106 45.455 21.82 0.00 33.22 2.41
127 128 5.420215 ACCTCTATAGTGGGGAGTAACAT 57.580 43.478 21.82 0.00 33.22 2.71
128 129 6.541264 ACCTCTATAGTGGGGAGTAACATA 57.459 41.667 21.82 0.00 33.22 2.29
129 130 7.117331 ACCTCTATAGTGGGGAGTAACATAT 57.883 40.000 21.82 0.00 33.22 1.78
130 131 6.954684 ACCTCTATAGTGGGGAGTAACATATG 59.045 42.308 21.82 0.00 33.22 1.78
131 132 6.954684 CCTCTATAGTGGGGAGTAACATATGT 59.045 42.308 12.29 1.41 0.00 2.29
132 133 7.093727 CCTCTATAGTGGGGAGTAACATATGTG 60.094 44.444 9.63 0.00 0.00 3.21
133 134 7.302948 TCTATAGTGGGGAGTAACATATGTGT 58.697 38.462 9.63 2.63 41.28 3.72
134 135 8.450434 TCTATAGTGGGGAGTAACATATGTGTA 58.550 37.037 9.63 1.65 37.67 2.90
135 136 5.871396 AGTGGGGAGTAACATATGTGTAG 57.129 43.478 9.63 0.00 37.67 2.74
136 137 5.278061 AGTGGGGAGTAACATATGTGTAGT 58.722 41.667 9.63 7.05 37.67 2.73
137 138 6.437755 AGTGGGGAGTAACATATGTGTAGTA 58.562 40.000 9.63 0.00 37.67 1.82
138 139 6.899075 AGTGGGGAGTAACATATGTGTAGTAA 59.101 38.462 9.63 0.00 37.67 2.24
139 140 6.982724 GTGGGGAGTAACATATGTGTAGTAAC 59.017 42.308 9.63 1.91 37.67 2.50
140 141 6.668718 TGGGGAGTAACATATGTGTAGTAACA 59.331 38.462 9.63 2.24 37.67 2.41
141 142 7.346175 TGGGGAGTAACATATGTGTAGTAACAT 59.654 37.037 9.63 0.00 43.21 2.71
142 143 7.656137 GGGGAGTAACATATGTGTAGTAACATG 59.344 40.741 9.63 0.00 40.93 3.21
143 144 7.170998 GGGAGTAACATATGTGTAGTAACATGC 59.829 40.741 9.63 0.00 40.93 4.06
144 145 7.709182 GGAGTAACATATGTGTAGTAACATGCA 59.291 37.037 9.63 0.00 40.93 3.96
145 146 9.261180 GAGTAACATATGTGTAGTAACATGCAT 57.739 33.333 9.63 0.00 40.93 3.96
146 147 9.261180 AGTAACATATGTGTAGTAACATGCATC 57.739 33.333 9.63 0.00 40.93 3.91
147 148 9.040939 GTAACATATGTGTAGTAACATGCATCA 57.959 33.333 9.63 0.00 40.93 3.07
148 149 7.482654 ACATATGTGTAGTAACATGCATCAC 57.517 36.000 7.78 0.33 40.93 3.06
149 150 7.275183 ACATATGTGTAGTAACATGCATCACT 58.725 34.615 7.78 10.77 40.93 3.41
150 151 7.770433 ACATATGTGTAGTAACATGCATCACTT 59.230 33.333 7.78 9.06 40.93 3.16
151 152 6.668541 ATGTGTAGTAACATGCATCACTTC 57.331 37.500 12.09 7.71 39.32 3.01
152 153 5.546526 TGTGTAGTAACATGCATCACTTCA 58.453 37.500 12.09 9.69 38.08 3.02
153 154 6.172630 TGTGTAGTAACATGCATCACTTCAT 58.827 36.000 12.09 0.00 38.08 2.57
154 155 6.654582 TGTGTAGTAACATGCATCACTTCATT 59.345 34.615 12.09 0.00 38.08 2.57
155 156 7.174772 TGTGTAGTAACATGCATCACTTCATTT 59.825 33.333 12.09 0.00 38.08 2.32
156 157 8.664798 GTGTAGTAACATGCATCACTTCATTTA 58.335 33.333 9.69 0.00 38.08 1.40
157 158 9.394767 TGTAGTAACATGCATCACTTCATTTAT 57.605 29.630 9.69 0.00 0.00 1.40
162 163 8.583810 AACATGCATCACTTCATTTATTATGC 57.416 30.769 0.00 0.00 38.90 3.14
163 164 7.948357 ACATGCATCACTTCATTTATTATGCT 58.052 30.769 0.00 0.00 39.13 3.79
164 165 9.070179 ACATGCATCACTTCATTTATTATGCTA 57.930 29.630 0.00 0.00 39.13 3.49
183 184 9.845740 TTATGCTATAGACTTATTTTGCCTTGA 57.154 29.630 3.21 0.00 0.00 3.02
184 185 8.930846 ATGCTATAGACTTATTTTGCCTTGAT 57.069 30.769 3.21 0.00 0.00 2.57
190 191 7.944729 AGACTTATTTTGCCTTGATATGTGT 57.055 32.000 0.00 0.00 0.00 3.72
191 192 7.765307 AGACTTATTTTGCCTTGATATGTGTG 58.235 34.615 0.00 0.00 0.00 3.82
192 193 7.611467 AGACTTATTTTGCCTTGATATGTGTGA 59.389 33.333 0.00 0.00 0.00 3.58
193 194 8.297470 ACTTATTTTGCCTTGATATGTGTGAT 57.703 30.769 0.00 0.00 0.00 3.06
194 195 8.192774 ACTTATTTTGCCTTGATATGTGTGATG 58.807 33.333 0.00 0.00 0.00 3.07
195 196 5.981088 TTTTGCCTTGATATGTGTGATGT 57.019 34.783 0.00 0.00 0.00 3.06
196 197 5.981088 TTTGCCTTGATATGTGTGATGTT 57.019 34.783 0.00 0.00 0.00 2.71
197 198 7.459795 TTTTGCCTTGATATGTGTGATGTTA 57.540 32.000 0.00 0.00 0.00 2.41
198 199 6.435430 TTGCCTTGATATGTGTGATGTTAC 57.565 37.500 0.00 0.00 0.00 2.50
199 200 5.495640 TGCCTTGATATGTGTGATGTTACA 58.504 37.500 0.00 0.00 0.00 2.41
230 231 9.334947 CTAGTAGTAACTAGCTATGTTACCACA 57.665 37.037 26.31 18.52 46.53 4.17
231 232 8.763984 AGTAGTAACTAGCTATGTTACCACAT 57.236 34.615 26.31 18.10 46.31 3.21
232 233 8.630917 AGTAGTAACTAGCTATGTTACCACATG 58.369 37.037 26.31 0.00 46.31 3.21
233 234 6.281405 AGTAACTAGCTATGTTACCACATGC 58.719 40.000 25.92 11.98 46.31 4.06
234 235 4.073293 ACTAGCTATGTTACCACATGCC 57.927 45.455 0.00 0.00 43.92 4.40
235 236 3.711704 ACTAGCTATGTTACCACATGCCT 59.288 43.478 0.00 0.00 43.92 4.75
236 237 3.199880 AGCTATGTTACCACATGCCTC 57.800 47.619 0.00 0.00 43.92 4.70
237 238 2.774234 AGCTATGTTACCACATGCCTCT 59.226 45.455 0.00 0.00 43.92 3.69
238 239 3.134458 GCTATGTTACCACATGCCTCTC 58.866 50.000 0.00 0.00 43.92 3.20
239 240 3.181461 GCTATGTTACCACATGCCTCTCT 60.181 47.826 0.00 0.00 43.92 3.10
240 241 4.684485 GCTATGTTACCACATGCCTCTCTT 60.684 45.833 0.00 0.00 43.92 2.85
241 242 3.788227 TGTTACCACATGCCTCTCTTT 57.212 42.857 0.00 0.00 0.00 2.52
242 243 4.098914 TGTTACCACATGCCTCTCTTTT 57.901 40.909 0.00 0.00 0.00 2.27
243 244 4.469657 TGTTACCACATGCCTCTCTTTTT 58.530 39.130 0.00 0.00 0.00 1.94
264 265 7.861176 TTTTTCGTTTATTACTTGCCACATC 57.139 32.000 0.00 0.00 0.00 3.06
265 266 6.561737 TTTCGTTTATTACTTGCCACATCA 57.438 33.333 0.00 0.00 0.00 3.07
266 267 6.751514 TTCGTTTATTACTTGCCACATCAT 57.248 33.333 0.00 0.00 0.00 2.45
267 268 6.358118 TCGTTTATTACTTGCCACATCATC 57.642 37.500 0.00 0.00 0.00 2.92
268 269 6.112734 TCGTTTATTACTTGCCACATCATCT 58.887 36.000 0.00 0.00 0.00 2.90
269 270 7.269316 TCGTTTATTACTTGCCACATCATCTA 58.731 34.615 0.00 0.00 0.00 1.98
270 271 7.931407 TCGTTTATTACTTGCCACATCATCTAT 59.069 33.333 0.00 0.00 0.00 1.98
271 272 8.559536 CGTTTATTACTTGCCACATCATCTATT 58.440 33.333 0.00 0.00 0.00 1.73
277 278 9.851686 TTACTTGCCACATCATCTATTTTATCT 57.148 29.630 0.00 0.00 0.00 1.98
279 280 9.499479 ACTTGCCACATCATCTATTTTATCTAG 57.501 33.333 0.00 0.00 0.00 2.43
280 281 9.716531 CTTGCCACATCATCTATTTTATCTAGA 57.283 33.333 0.00 0.00 0.00 2.43
310 311 8.004087 TGTGATGTTACTACCTATGTTACTCC 57.996 38.462 0.00 0.00 0.00 3.85
311 312 7.069085 TGTGATGTTACTACCTATGTTACTCCC 59.931 40.741 0.00 0.00 0.00 4.30
312 313 7.069085 GTGATGTTACTACCTATGTTACTCCCA 59.931 40.741 0.00 0.00 0.00 4.37
313 314 6.780457 TGTTACTACCTATGTTACTCCCAC 57.220 41.667 0.00 0.00 0.00 4.61
314 315 6.496743 TGTTACTACCTATGTTACTCCCACT 58.503 40.000 0.00 0.00 0.00 4.00
315 316 6.379133 TGTTACTACCTATGTTACTCCCACTG 59.621 42.308 0.00 0.00 0.00 3.66
316 317 4.944177 ACTACCTATGTTACTCCCACTGT 58.056 43.478 0.00 0.00 0.00 3.55
317 318 4.710375 ACTACCTATGTTACTCCCACTGTG 59.290 45.833 0.00 0.00 0.00 3.66
318 319 2.838202 ACCTATGTTACTCCCACTGTGG 59.162 50.000 20.01 20.01 37.25 4.17
330 331 2.537143 CCACTGTGGGTAGTCTAAGGT 58.463 52.381 19.23 0.00 32.67 3.50
331 332 2.904434 CCACTGTGGGTAGTCTAAGGTT 59.096 50.000 19.23 0.00 32.67 3.50
332 333 3.326880 CCACTGTGGGTAGTCTAAGGTTT 59.673 47.826 19.23 0.00 32.67 3.27
333 334 4.202430 CCACTGTGGGTAGTCTAAGGTTTT 60.202 45.833 19.23 0.00 32.67 2.43
334 335 5.012354 CCACTGTGGGTAGTCTAAGGTTTTA 59.988 44.000 19.23 0.00 32.67 1.52
335 336 5.930569 CACTGTGGGTAGTCTAAGGTTTTAC 59.069 44.000 0.00 0.00 0.00 2.01
336 337 5.138125 TGTGGGTAGTCTAAGGTTTTACG 57.862 43.478 0.00 0.00 0.00 3.18
337 338 4.021192 TGTGGGTAGTCTAAGGTTTTACGG 60.021 45.833 0.00 0.00 0.00 4.02
338 339 4.220602 GTGGGTAGTCTAAGGTTTTACGGA 59.779 45.833 0.00 0.00 0.00 4.69
339 340 5.025453 TGGGTAGTCTAAGGTTTTACGGAT 58.975 41.667 0.00 0.00 0.00 4.18
340 341 5.127682 TGGGTAGTCTAAGGTTTTACGGATC 59.872 44.000 0.00 0.00 0.00 3.36
341 342 5.127682 GGGTAGTCTAAGGTTTTACGGATCA 59.872 44.000 0.00 0.00 0.00 2.92
342 343 6.351286 GGGTAGTCTAAGGTTTTACGGATCAA 60.351 42.308 0.00 0.00 0.00 2.57
343 344 6.533012 GGTAGTCTAAGGTTTTACGGATCAAC 59.467 42.308 0.00 0.00 0.00 3.18
344 345 5.485620 AGTCTAAGGTTTTACGGATCAACC 58.514 41.667 4.15 4.15 40.40 3.77
345 346 4.633126 GTCTAAGGTTTTACGGATCAACCC 59.367 45.833 7.99 0.00 40.92 4.11
346 347 3.512219 AAGGTTTTACGGATCAACCCA 57.488 42.857 7.99 0.00 40.92 4.51
347 348 3.512219 AGGTTTTACGGATCAACCCAA 57.488 42.857 7.99 0.00 40.92 4.12
348 349 3.151554 AGGTTTTACGGATCAACCCAAC 58.848 45.455 7.99 0.00 40.92 3.77
349 350 2.885894 GGTTTTACGGATCAACCCAACA 59.114 45.455 0.00 0.00 34.90 3.33
350 351 3.508402 GGTTTTACGGATCAACCCAACAT 59.492 43.478 0.00 0.00 34.90 2.71
351 352 4.481463 GTTTTACGGATCAACCCAACATG 58.519 43.478 0.00 0.00 34.64 3.21
352 353 2.411628 TACGGATCAACCCAACATGG 57.588 50.000 0.00 0.00 37.25 3.66
353 354 0.965363 ACGGATCAACCCAACATGGC 60.965 55.000 0.00 0.00 35.79 4.40
354 355 0.964860 CGGATCAACCCAACATGGCA 60.965 55.000 0.00 0.00 35.79 4.92
355 356 0.532115 GGATCAACCCAACATGGCAC 59.468 55.000 0.00 0.00 35.79 5.01
356 357 1.549203 GATCAACCCAACATGGCACT 58.451 50.000 0.00 0.00 35.79 4.40
357 358 1.474077 GATCAACCCAACATGGCACTC 59.526 52.381 0.00 0.00 35.79 3.51
358 359 0.478072 TCAACCCAACATGGCACTCT 59.522 50.000 0.00 0.00 35.79 3.24
359 360 0.883833 CAACCCAACATGGCACTCTC 59.116 55.000 0.00 0.00 35.79 3.20
360 361 0.606401 AACCCAACATGGCACTCTCG 60.606 55.000 0.00 0.00 35.79 4.04
361 362 1.746615 CCCAACATGGCACTCTCGG 60.747 63.158 0.00 0.00 35.79 4.63
362 363 1.296392 CCAACATGGCACTCTCGGA 59.704 57.895 0.00 0.00 0.00 4.55
363 364 0.107508 CCAACATGGCACTCTCGGAT 60.108 55.000 0.00 0.00 0.00 4.18
364 365 1.679944 CCAACATGGCACTCTCGGATT 60.680 52.381 0.00 0.00 0.00 3.01
365 366 2.086869 CAACATGGCACTCTCGGATTT 58.913 47.619 0.00 0.00 0.00 2.17
366 367 1.742761 ACATGGCACTCTCGGATTTG 58.257 50.000 0.00 0.00 0.00 2.32
367 368 1.278985 ACATGGCACTCTCGGATTTGA 59.721 47.619 0.00 0.00 0.00 2.69
368 369 1.667724 CATGGCACTCTCGGATTTGAC 59.332 52.381 0.00 0.00 0.00 3.18
369 370 0.389817 TGGCACTCTCGGATTTGACG 60.390 55.000 0.00 0.00 0.00 4.35
370 371 0.389948 GGCACTCTCGGATTTGACGT 60.390 55.000 0.00 0.00 0.00 4.34
371 372 1.429463 GCACTCTCGGATTTGACGTT 58.571 50.000 0.00 0.00 0.00 3.99
372 373 1.126846 GCACTCTCGGATTTGACGTTG 59.873 52.381 0.00 0.00 0.00 4.10
373 374 1.726791 CACTCTCGGATTTGACGTTGG 59.273 52.381 0.00 0.00 0.00 3.77
374 375 1.343465 ACTCTCGGATTTGACGTTGGT 59.657 47.619 0.00 0.00 0.00 3.67
375 376 2.224209 ACTCTCGGATTTGACGTTGGTT 60.224 45.455 0.00 0.00 0.00 3.67
376 377 2.806244 CTCTCGGATTTGACGTTGGTTT 59.194 45.455 0.00 0.00 0.00 3.27
377 378 2.546368 TCTCGGATTTGACGTTGGTTTG 59.454 45.455 0.00 0.00 0.00 2.93
378 379 1.604755 TCGGATTTGACGTTGGTTTGG 59.395 47.619 0.00 0.00 0.00 3.28
379 380 1.335506 CGGATTTGACGTTGGTTTGGG 60.336 52.381 0.00 0.00 0.00 4.12
380 381 1.684450 GGATTTGACGTTGGTTTGGGT 59.316 47.619 0.00 0.00 0.00 4.51
381 382 2.885894 GGATTTGACGTTGGTTTGGGTA 59.114 45.455 0.00 0.00 0.00 3.69
382 383 3.304861 GGATTTGACGTTGGTTTGGGTAC 60.305 47.826 0.00 0.00 0.00 3.34
383 384 2.713863 TTGACGTTGGTTTGGGTACT 57.286 45.000 0.00 0.00 0.00 2.73
384 385 2.713863 TGACGTTGGTTTGGGTACTT 57.286 45.000 0.00 0.00 0.00 2.24
385 386 2.290464 TGACGTTGGTTTGGGTACTTG 58.710 47.619 0.00 0.00 0.00 3.16
386 387 1.605232 GACGTTGGTTTGGGTACTTGG 59.395 52.381 0.00 0.00 0.00 3.61
387 388 0.312729 CGTTGGTTTGGGTACTTGGC 59.687 55.000 0.00 0.00 0.00 4.52
388 389 0.677288 GTTGGTTTGGGTACTTGGCC 59.323 55.000 0.00 0.00 0.00 5.36
389 390 0.470268 TTGGTTTGGGTACTTGGCCC 60.470 55.000 0.00 0.00 46.26 5.80
395 396 2.675371 GGTACTTGGCCCACCCTC 59.325 66.667 0.00 0.00 33.59 4.30
396 397 2.675371 GTACTTGGCCCACCCTCC 59.325 66.667 0.00 0.00 33.59 4.30
397 398 1.923909 GTACTTGGCCCACCCTCCT 60.924 63.158 0.00 0.00 33.59 3.69
398 399 1.923395 TACTTGGCCCACCCTCCTG 60.923 63.158 0.00 0.00 33.59 3.86
399 400 2.409984 TACTTGGCCCACCCTCCTGA 62.410 60.000 0.00 0.00 33.59 3.86
400 401 2.451493 TTGGCCCACCCTCCTGAA 60.451 61.111 0.00 0.00 33.59 3.02
401 402 2.080336 CTTGGCCCACCCTCCTGAAA 62.080 60.000 0.00 0.00 33.59 2.69
402 403 1.442886 TTGGCCCACCCTCCTGAAAT 61.443 55.000 0.00 0.00 33.59 2.17
403 404 1.388133 GGCCCACCCTCCTGAAATT 59.612 57.895 0.00 0.00 0.00 1.82
404 405 0.684479 GGCCCACCCTCCTGAAATTC 60.684 60.000 0.00 0.00 0.00 2.17
405 406 0.684479 GCCCACCCTCCTGAAATTCC 60.684 60.000 0.00 0.00 0.00 3.01
406 407 0.394352 CCCACCCTCCTGAAATTCCG 60.394 60.000 0.00 0.00 0.00 4.30
407 408 0.394352 CCACCCTCCTGAAATTCCGG 60.394 60.000 0.00 0.00 0.00 5.14
408 409 0.394352 CACCCTCCTGAAATTCCGGG 60.394 60.000 0.00 4.74 37.70 5.73
409 410 1.227383 CCCTCCTGAAATTCCGGGG 59.773 63.158 0.00 0.00 33.36 5.73
410 411 1.227383 CCTCCTGAAATTCCGGGGG 59.773 63.158 7.99 7.99 33.36 5.40
442 443 2.417586 GTGGTTAGTTTGCACCCGTATC 59.582 50.000 0.00 0.00 31.24 2.24
452 453 1.942586 GCACCCGTATCCGTTGTTCTT 60.943 52.381 0.00 0.00 0.00 2.52
462 463 7.061326 CCGTATCCGTTGTTCTTTTATTTTTGG 59.939 37.037 0.00 0.00 0.00 3.28
630 631 1.153289 CCTCGAGGCTGGGAACATG 60.153 63.158 20.67 0.00 41.51 3.21
640 641 2.275418 GGAACATGGGGTCGGCAT 59.725 61.111 0.00 0.00 0.00 4.40
794 796 2.512515 GAGTGACGCATCTGGGCC 60.513 66.667 0.00 0.00 0.00 5.80
897 900 1.702886 CTGCCTGACAGTTACACGAG 58.297 55.000 0.93 0.00 41.86 4.18
898 901 1.269723 CTGCCTGACAGTTACACGAGA 59.730 52.381 0.93 0.00 41.86 4.04
899 902 1.684450 TGCCTGACAGTTACACGAGAA 59.316 47.619 0.93 0.00 0.00 2.87
900 903 2.059541 GCCTGACAGTTACACGAGAAC 58.940 52.381 0.93 0.00 0.00 3.01
901 904 2.673833 CCTGACAGTTACACGAGAACC 58.326 52.381 0.93 0.00 0.00 3.62
902 905 2.316792 CTGACAGTTACACGAGAACCG 58.683 52.381 0.00 0.00 45.44 4.44
903 906 1.001048 TGACAGTTACACGAGAACCGG 60.001 52.381 0.00 0.00 43.93 5.28
904 907 0.319297 ACAGTTACACGAGAACCGGC 60.319 55.000 0.00 0.00 43.93 6.13
905 908 1.012486 CAGTTACACGAGAACCGGCC 61.012 60.000 0.00 0.00 43.93 6.13
957 1409 0.038159 CACGAGAACCCCACTCTGTC 60.038 60.000 0.00 0.00 32.87 3.51
1020 1472 0.254178 TGCCCAATTCTCTCCTGCTC 59.746 55.000 0.00 0.00 0.00 4.26
1021 1473 0.465278 GCCCAATTCTCTCCTGCTCC 60.465 60.000 0.00 0.00 0.00 4.70
1022 1474 1.211456 CCCAATTCTCTCCTGCTCCT 58.789 55.000 0.00 0.00 0.00 3.69
1023 1475 1.140652 CCCAATTCTCTCCTGCTCCTC 59.859 57.143 0.00 0.00 0.00 3.71
1138 1590 1.956170 CGCTTCAACACGCACCTCT 60.956 57.895 0.00 0.00 0.00 3.69
1140 1592 0.663153 GCTTCAACACGCACCTCTTT 59.337 50.000 0.00 0.00 0.00 2.52
1272 1724 3.989698 CTGCTCCTGGTACCGCACG 62.990 68.421 7.57 1.68 0.00 5.34
2043 2495 2.347490 CAGTACGGCTGGCACCTT 59.653 61.111 1.08 0.00 41.42 3.50
2229 2684 2.993840 AGCACCGCAGAGCTGAGA 60.994 61.111 0.85 0.00 37.31 3.27
2384 2839 7.504924 AGGACTACGAAATGTCAAATGAAAA 57.495 32.000 0.00 0.00 35.11 2.29
2541 3004 6.831727 CAAGTCATTTGCATTTTCAAGTCA 57.168 33.333 0.00 0.00 0.00 3.41
2543 3006 7.857569 CAAGTCATTTGCATTTTCAAGTCATT 58.142 30.769 0.00 0.00 0.00 2.57
2544 3007 8.339714 CAAGTCATTTGCATTTTCAAGTCATTT 58.660 29.630 0.00 0.00 0.00 2.32
2545 3008 7.857569 AGTCATTTGCATTTTCAAGTCATTTG 58.142 30.769 0.00 0.00 38.17 2.32
2546 3009 6.575942 GTCATTTGCATTTTCAAGTCATTTGC 59.424 34.615 0.00 0.00 36.70 3.68
2547 3010 6.260271 TCATTTGCATTTTCAAGTCATTTGCA 59.740 30.769 0.00 0.00 36.70 4.08
2548 3011 6.621316 TTTGCATTTTCAAGTCATTTGCAT 57.379 29.167 0.00 0.00 38.30 3.96
2549 3012 6.621316 TTGCATTTTCAAGTCATTTGCATT 57.379 29.167 0.00 0.00 38.30 3.56
2550 3013 6.621316 TGCATTTTCAAGTCATTTGCATTT 57.379 29.167 0.00 0.00 36.70 2.32
2551 3014 6.431278 TGCATTTTCAAGTCATTTGCATTTG 58.569 32.000 0.00 0.00 36.70 2.32
2560 3058 5.413499 AGTCATTTGCATTTGCTATGGTTC 58.587 37.500 14.07 8.34 42.66 3.62
2574 3072 7.377766 TGCTATGGTTCAAGTCTGTATTTTC 57.622 36.000 0.00 0.00 0.00 2.29
2583 3081 9.612620 GTTCAAGTCTGTATTTTCATGGTTTAG 57.387 33.333 0.00 0.00 0.00 1.85
2584 3082 9.567776 TTCAAGTCTGTATTTTCATGGTTTAGA 57.432 29.630 0.00 0.00 0.00 2.10
2595 3093 4.469657 TCATGGTTTAGAGCAAACTGGTT 58.530 39.130 0.00 0.00 45.01 3.67
2596 3094 5.626142 TCATGGTTTAGAGCAAACTGGTTA 58.374 37.500 0.00 0.00 45.01 2.85
2606 3104 5.948162 AGAGCAAACTGGTTATGATCACATT 59.052 36.000 0.00 0.00 37.87 2.71
2607 3105 6.094603 AGAGCAAACTGGTTATGATCACATTC 59.905 38.462 0.00 0.00 37.87 2.67
2608 3106 5.711506 AGCAAACTGGTTATGATCACATTCA 59.288 36.000 0.00 0.00 37.87 2.57
2609 3107 5.801947 GCAAACTGGTTATGATCACATTCAC 59.198 40.000 0.00 0.00 37.87 3.18
2612 3110 8.676401 CAAACTGGTTATGATCACATTCACATA 58.324 33.333 0.00 0.00 37.87 2.29
2615 3113 8.704668 ACTGGTTATGATCACATTCACATACTA 58.295 33.333 0.00 0.00 37.87 1.82
2616 3114 8.887036 TGGTTATGATCACATTCACATACTAC 57.113 34.615 0.00 0.00 37.87 2.73
2623 3121 8.236586 TGATCACATTCACATACTACTTTTTGC 58.763 33.333 0.00 0.00 0.00 3.68
2624 3122 6.598525 TCACATTCACATACTACTTTTTGCG 58.401 36.000 0.00 0.00 0.00 4.85
2625 3123 5.794945 CACATTCACATACTACTTTTTGCGG 59.205 40.000 0.00 0.00 0.00 5.69
2626 3124 5.106317 ACATTCACATACTACTTTTTGCGGG 60.106 40.000 0.00 0.00 0.00 6.13
2627 3125 4.274602 TCACATACTACTTTTTGCGGGA 57.725 40.909 0.00 0.00 0.00 5.14
2628 3126 4.839121 TCACATACTACTTTTTGCGGGAT 58.161 39.130 0.00 0.00 0.00 3.85
2629 3127 5.979993 TCACATACTACTTTTTGCGGGATA 58.020 37.500 0.00 0.00 0.00 2.59
2630 3128 6.408035 TCACATACTACTTTTTGCGGGATAA 58.592 36.000 0.00 0.00 0.00 1.75
2678 3176 8.511604 AATAGTGTTGCTGCTAATACAATCTT 57.488 30.769 0.00 0.00 0.00 2.40
2703 3201 2.607892 GCTGTCTGGAACACGGTGC 61.608 63.158 8.30 0.00 33.24 5.01
2704 3202 1.227527 CTGTCTGGAACACGGTGCA 60.228 57.895 8.30 0.00 33.24 4.57
2705 3203 0.813610 CTGTCTGGAACACGGTGCAA 60.814 55.000 8.30 0.00 33.24 4.08
2706 3204 0.179032 TGTCTGGAACACGGTGCAAT 60.179 50.000 8.30 0.00 31.20 3.56
2707 3205 0.517316 GTCTGGAACACGGTGCAATC 59.483 55.000 8.30 4.43 0.00 2.67
2708 3206 0.107643 TCTGGAACACGGTGCAATCA 59.892 50.000 8.30 1.32 0.00 2.57
2709 3207 0.518636 CTGGAACACGGTGCAATCAG 59.481 55.000 8.30 7.40 0.00 2.90
2710 3208 1.210155 GGAACACGGTGCAATCAGC 59.790 57.895 8.30 0.00 45.96 4.26
2731 3229 2.550606 CACGGTGCTACCTCTAGATCTC 59.449 54.545 0.00 0.00 35.66 2.75
2750 3248 1.760613 TCCCTGCTATTGGACCTTACG 59.239 52.381 0.00 0.00 0.00 3.18
2770 3268 5.339008 ACGAGGTAGCAATTGACATAAGA 57.661 39.130 10.34 0.00 0.00 2.10
2774 3272 7.336931 ACGAGGTAGCAATTGACATAAGAATTT 59.663 33.333 10.34 0.00 0.00 1.82
2884 3382 4.518970 TGAGAAGTATTTTCCACTGCAACC 59.481 41.667 0.00 0.00 0.00 3.77
2893 3391 3.627395 TCCACTGCAACCGAATAAGAT 57.373 42.857 0.00 0.00 0.00 2.40
2894 3392 3.950397 TCCACTGCAACCGAATAAGATT 58.050 40.909 0.00 0.00 0.00 2.40
2910 3408 8.755018 CGAATAAGATTATGCCATTGGTTTTTC 58.245 33.333 4.26 0.00 0.00 2.29
2942 3440 2.551270 CAACTCCAACGCGCTGAC 59.449 61.111 11.83 0.00 0.00 3.51
2982 3480 0.382515 TCCGCTTTTTGTCCGTTTGG 59.617 50.000 0.00 0.00 0.00 3.28
2991 3489 2.267642 TCCGTTTGGATCGGCTGG 59.732 61.111 0.00 0.00 46.49 4.85
2999 3497 2.359169 GGATCGGCTGGAGGTGTGA 61.359 63.158 0.00 0.00 0.00 3.58
3007 3505 1.003839 TGGAGGTGTGATGTTCGGC 60.004 57.895 0.00 0.00 0.00 5.54
3025 3523 1.970917 GCCGTGTCCGCTCAAATCTG 61.971 60.000 0.00 0.00 0.00 2.90
3028 3526 0.674895 GTGTCCGCTCAAATCTGCCT 60.675 55.000 0.00 0.00 0.00 4.75
3061 3559 2.664436 GCCGACACCTTTTCGTCCG 61.664 63.158 0.00 0.00 34.56 4.79
3097 3595 6.260714 GCAAATTTAATCTAAAATGGGCCAGG 59.739 38.462 13.78 0.00 0.00 4.45
3120 3618 1.950909 GACCACTAGGATGTCTCTCGG 59.049 57.143 0.00 0.00 38.69 4.63
3178 3677 2.028484 GTGTGGCGTTGAGGTCGA 59.972 61.111 0.00 0.00 0.00 4.20
3185 3684 2.100631 CGTTGAGGTCGATGGCCAC 61.101 63.158 8.16 0.47 0.00 5.01
3212 3711 2.186903 GGTGGTCGGCGTGATCAT 59.813 61.111 6.85 0.00 40.58 2.45
3216 3715 2.240500 GGTCGGCGTGATCATGCTC 61.241 63.158 32.89 23.29 42.72 4.26
3221 3720 1.162800 GGCGTGATCATGCTCCCTTC 61.163 60.000 32.89 15.93 42.72 3.46
3224 3723 0.533755 GTGATCATGCTCCCTTCCGG 60.534 60.000 0.00 0.00 0.00 5.14
3233 3732 3.058160 CCCTTCCGGCAAGCAGTG 61.058 66.667 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.699321 TGATCCAGATTGCTCCTCAGAG 59.301 50.000 0.00 0.00 43.57 3.35
5 6 2.755686 TGATCCAGATTGCTCCTCAGA 58.244 47.619 0.00 0.00 0.00 3.27
6 7 3.204526 GTTGATCCAGATTGCTCCTCAG 58.795 50.000 0.00 0.00 0.00 3.35
7 8 2.419159 CGTTGATCCAGATTGCTCCTCA 60.419 50.000 0.00 0.00 0.00 3.86
8 9 2.159043 TCGTTGATCCAGATTGCTCCTC 60.159 50.000 0.00 0.00 0.00 3.71
9 10 1.833630 TCGTTGATCCAGATTGCTCCT 59.166 47.619 0.00 0.00 0.00 3.69
10 11 2.315925 TCGTTGATCCAGATTGCTCC 57.684 50.000 0.00 0.00 0.00 4.70
11 12 3.265791 AGTTCGTTGATCCAGATTGCTC 58.734 45.455 0.00 0.00 0.00 4.26
12 13 3.055530 AGAGTTCGTTGATCCAGATTGCT 60.056 43.478 0.00 0.00 0.00 3.91
13 14 3.265791 AGAGTTCGTTGATCCAGATTGC 58.734 45.455 0.00 0.00 0.00 3.56
14 15 5.869753 AAAGAGTTCGTTGATCCAGATTG 57.130 39.130 0.00 0.00 0.00 2.67
15 16 6.702329 AGTAAAGAGTTCGTTGATCCAGATT 58.298 36.000 0.00 0.00 0.00 2.40
16 17 6.287589 AGTAAAGAGTTCGTTGATCCAGAT 57.712 37.500 0.00 0.00 0.00 2.90
17 18 5.723672 AGTAAAGAGTTCGTTGATCCAGA 57.276 39.130 0.00 0.00 0.00 3.86
18 19 7.273815 GTCTTAGTAAAGAGTTCGTTGATCCAG 59.726 40.741 0.00 0.00 42.40 3.86
19 20 7.039923 AGTCTTAGTAAAGAGTTCGTTGATCCA 60.040 37.037 0.00 0.00 41.70 3.41
20 21 7.314393 AGTCTTAGTAAAGAGTTCGTTGATCC 58.686 38.462 0.00 0.00 41.70 3.36
21 22 9.493206 CTAGTCTTAGTAAAGAGTTCGTTGATC 57.507 37.037 1.11 0.00 41.70 2.92
22 23 7.969508 GCTAGTCTTAGTAAAGAGTTCGTTGAT 59.030 37.037 1.11 0.00 41.70 2.57
23 24 7.303998 GCTAGTCTTAGTAAAGAGTTCGTTGA 58.696 38.462 1.11 0.00 41.70 3.18
24 25 6.527372 GGCTAGTCTTAGTAAAGAGTTCGTTG 59.473 42.308 1.11 0.00 41.70 4.10
25 26 6.208204 TGGCTAGTCTTAGTAAAGAGTTCGTT 59.792 38.462 0.00 0.00 41.70 3.85
26 27 5.709164 TGGCTAGTCTTAGTAAAGAGTTCGT 59.291 40.000 0.00 0.00 41.70 3.85
27 28 6.028987 GTGGCTAGTCTTAGTAAAGAGTTCG 58.971 44.000 0.00 0.00 41.70 3.95
28 29 6.921914 TGTGGCTAGTCTTAGTAAAGAGTTC 58.078 40.000 0.00 0.00 41.70 3.01
29 30 6.912951 TGTGGCTAGTCTTAGTAAAGAGTT 57.087 37.500 0.00 0.00 41.70 3.01
30 31 6.912951 TTGTGGCTAGTCTTAGTAAAGAGT 57.087 37.500 0.00 1.47 45.44 3.24
31 32 6.758886 CCATTGTGGCTAGTCTTAGTAAAGAG 59.241 42.308 0.00 0.00 42.40 2.85
32 33 6.351881 CCCATTGTGGCTAGTCTTAGTAAAGA 60.352 42.308 0.00 0.00 36.37 2.52
33 34 5.817816 CCCATTGTGGCTAGTCTTAGTAAAG 59.182 44.000 0.00 0.00 35.79 1.85
34 35 5.249852 ACCCATTGTGGCTAGTCTTAGTAAA 59.750 40.000 0.00 0.00 35.79 2.01
35 36 4.781087 ACCCATTGTGGCTAGTCTTAGTAA 59.219 41.667 0.00 0.00 35.79 2.24
36 37 4.359105 ACCCATTGTGGCTAGTCTTAGTA 58.641 43.478 0.00 0.00 35.79 1.82
37 38 3.182152 ACCCATTGTGGCTAGTCTTAGT 58.818 45.455 0.00 0.00 35.79 2.24
38 39 3.914426 ACCCATTGTGGCTAGTCTTAG 57.086 47.619 0.00 0.00 35.79 2.18
39 40 5.968676 ATTACCCATTGTGGCTAGTCTTA 57.031 39.130 0.00 0.00 35.79 2.10
40 41 4.862641 ATTACCCATTGTGGCTAGTCTT 57.137 40.909 0.00 0.00 35.79 3.01
41 42 5.190925 TGTTATTACCCATTGTGGCTAGTCT 59.809 40.000 0.00 0.00 35.79 3.24
42 43 5.433526 TGTTATTACCCATTGTGGCTAGTC 58.566 41.667 0.00 0.00 35.79 2.59
43 44 5.444744 TGTTATTACCCATTGTGGCTAGT 57.555 39.130 0.00 0.00 35.79 2.57
44 45 7.450074 TCTATGTTATTACCCATTGTGGCTAG 58.550 38.462 0.00 0.00 35.79 3.42
45 46 7.071950 ACTCTATGTTATTACCCATTGTGGCTA 59.928 37.037 0.00 0.00 35.79 3.93
46 47 6.126478 ACTCTATGTTATTACCCATTGTGGCT 60.126 38.462 0.00 0.00 35.79 4.75
47 48 6.062095 ACTCTATGTTATTACCCATTGTGGC 58.938 40.000 0.00 0.00 35.79 5.01
48 49 8.429641 ACTACTCTATGTTATTACCCATTGTGG 58.570 37.037 0.00 0.00 37.25 4.17
55 56 9.924650 CCATGTTACTACTCTATGTTATTACCC 57.075 37.037 0.00 0.00 0.00 3.69
56 57 9.924650 CCCATGTTACTACTCTATGTTATTACC 57.075 37.037 0.00 0.00 0.00 2.85
57 58 9.420551 GCCCATGTTACTACTCTATGTTATTAC 57.579 37.037 0.00 0.00 0.00 1.89
58 59 9.150028 TGCCCATGTTACTACTCTATGTTATTA 57.850 33.333 0.00 0.00 0.00 0.98
59 60 8.029782 TGCCCATGTTACTACTCTATGTTATT 57.970 34.615 0.00 0.00 0.00 1.40
60 61 7.612065 TGCCCATGTTACTACTCTATGTTAT 57.388 36.000 0.00 0.00 0.00 1.89
61 62 7.441836 CATGCCCATGTTACTACTCTATGTTA 58.558 38.462 0.13 0.00 34.23 2.41
62 63 5.950544 TGCCCATGTTACTACTCTATGTT 57.049 39.130 0.00 0.00 0.00 2.71
63 64 5.858381 CATGCCCATGTTACTACTCTATGT 58.142 41.667 0.13 0.00 34.23 2.29
77 78 5.858381 ACATAGAGTAGTAACATGCCCATG 58.142 41.667 6.71 6.71 44.15 3.66
78 79 6.500589 AACATAGAGTAGTAACATGCCCAT 57.499 37.500 0.00 0.00 0.00 4.00
79 80 5.950544 AACATAGAGTAGTAACATGCCCA 57.049 39.130 0.00 0.00 0.00 5.36
80 81 7.052142 AGTAACATAGAGTAGTAACATGCCC 57.948 40.000 0.00 0.00 0.00 5.36
81 82 8.081025 GGTAGTAACATAGAGTAGTAACATGCC 58.919 40.741 0.00 0.00 0.00 4.40
82 83 8.848182 AGGTAGTAACATAGAGTAGTAACATGC 58.152 37.037 0.00 0.00 0.00 4.06
92 93 8.384718 CCCACTATAGAGGTAGTAACATAGAGT 58.615 40.741 14.29 0.00 33.29 3.24
93 94 7.830201 CCCCACTATAGAGGTAGTAACATAGAG 59.170 44.444 14.29 0.00 33.29 2.43
94 95 7.518653 TCCCCACTATAGAGGTAGTAACATAGA 59.481 40.741 14.29 0.00 33.29 1.98
95 96 7.696981 TCCCCACTATAGAGGTAGTAACATAG 58.303 42.308 14.29 0.00 33.29 2.23
96 97 7.296628 ACTCCCCACTATAGAGGTAGTAACATA 59.703 40.741 14.29 0.00 33.29 2.29
97 98 6.104392 ACTCCCCACTATAGAGGTAGTAACAT 59.896 42.308 14.29 0.00 33.29 2.71
98 99 5.434376 ACTCCCCACTATAGAGGTAGTAACA 59.566 44.000 14.29 0.00 33.29 2.41
99 100 5.951204 ACTCCCCACTATAGAGGTAGTAAC 58.049 45.833 14.29 0.00 33.29 2.50
100 101 7.129349 TGTTACTCCCCACTATAGAGGTAGTAA 59.871 40.741 23.15 23.15 33.91 2.24
101 102 6.621098 TGTTACTCCCCACTATAGAGGTAGTA 59.379 42.308 17.42 17.42 33.29 1.82
102 103 5.434376 TGTTACTCCCCACTATAGAGGTAGT 59.566 44.000 18.82 18.82 35.34 2.73
103 104 5.950023 TGTTACTCCCCACTATAGAGGTAG 58.050 45.833 14.29 12.87 31.70 3.18
104 105 5.999987 TGTTACTCCCCACTATAGAGGTA 57.000 43.478 14.29 2.62 31.70 3.08
105 106 4.894252 TGTTACTCCCCACTATAGAGGT 57.106 45.455 14.29 0.00 31.70 3.85
106 107 6.954684 ACATATGTTACTCCCCACTATAGAGG 59.045 42.308 6.78 8.10 31.70 3.69
107 108 7.451877 ACACATATGTTACTCCCCACTATAGAG 59.548 40.741 5.37 0.00 34.46 2.43
108 109 7.302948 ACACATATGTTACTCCCCACTATAGA 58.697 38.462 5.37 0.00 34.46 1.98
109 110 7.540474 ACACATATGTTACTCCCCACTATAG 57.460 40.000 5.37 0.00 34.46 1.31
110 111 8.229605 ACTACACATATGTTACTCCCCACTATA 58.770 37.037 5.37 0.00 40.48 1.31
111 112 7.073854 ACTACACATATGTTACTCCCCACTAT 58.926 38.462 5.37 0.00 40.48 2.12
112 113 6.437755 ACTACACATATGTTACTCCCCACTA 58.562 40.000 5.37 0.00 40.48 2.74
113 114 5.278061 ACTACACATATGTTACTCCCCACT 58.722 41.667 5.37 0.00 40.48 4.00
114 115 5.609533 ACTACACATATGTTACTCCCCAC 57.390 43.478 5.37 0.00 40.48 4.61
115 116 6.668718 TGTTACTACACATATGTTACTCCCCA 59.331 38.462 5.37 0.00 40.48 4.96
116 117 7.116075 TGTTACTACACATATGTTACTCCCC 57.884 40.000 5.37 0.00 40.48 4.81
117 118 7.170998 GCATGTTACTACACATATGTTACTCCC 59.829 40.741 5.37 0.00 40.48 4.30
118 119 7.709182 TGCATGTTACTACACATATGTTACTCC 59.291 37.037 5.37 0.00 40.48 3.85
119 120 8.642908 TGCATGTTACTACACATATGTTACTC 57.357 34.615 5.37 0.00 40.48 2.59
120 121 9.261180 GATGCATGTTACTACACATATGTTACT 57.739 33.333 2.46 0.00 40.48 2.24
121 122 9.040939 TGATGCATGTTACTACACATATGTTAC 57.959 33.333 2.46 0.00 40.48 2.50
122 123 9.040939 GTGATGCATGTTACTACACATATGTTA 57.959 33.333 2.46 2.01 40.48 2.41
123 124 7.770433 AGTGATGCATGTTACTACACATATGTT 59.230 33.333 2.46 0.84 40.48 2.71
124 125 7.275183 AGTGATGCATGTTACTACACATATGT 58.725 34.615 2.46 1.41 43.30 2.29
125 126 7.719778 AGTGATGCATGTTACTACACATATG 57.280 36.000 2.46 0.00 35.51 1.78
126 127 7.986889 TGAAGTGATGCATGTTACTACACATAT 59.013 33.333 2.46 0.00 35.51 1.78
127 128 7.327214 TGAAGTGATGCATGTTACTACACATA 58.673 34.615 2.46 0.00 35.51 2.29
128 129 6.172630 TGAAGTGATGCATGTTACTACACAT 58.827 36.000 2.46 0.00 37.93 3.21
129 130 5.546526 TGAAGTGATGCATGTTACTACACA 58.453 37.500 2.46 5.13 37.03 3.72
130 131 6.668541 ATGAAGTGATGCATGTTACTACAC 57.331 37.500 2.46 3.90 37.03 2.90
131 132 7.686438 AAATGAAGTGATGCATGTTACTACA 57.314 32.000 2.46 0.00 38.95 2.74
136 137 9.681692 GCATAATAAATGAAGTGATGCATGTTA 57.318 29.630 2.46 0.00 38.43 2.41
137 138 8.418662 AGCATAATAAATGAAGTGATGCATGTT 58.581 29.630 2.46 0.00 40.47 2.71
138 139 7.948357 AGCATAATAAATGAAGTGATGCATGT 58.052 30.769 2.46 0.00 40.47 3.21
157 158 9.845740 TCAAGGCAAAATAAGTCTATAGCATAA 57.154 29.630 0.00 0.00 0.00 1.90
159 160 8.930846 ATCAAGGCAAAATAAGTCTATAGCAT 57.069 30.769 0.00 0.00 0.00 3.79
164 165 9.632638 ACACATATCAAGGCAAAATAAGTCTAT 57.367 29.630 0.00 0.00 0.00 1.98
165 166 8.892723 CACACATATCAAGGCAAAATAAGTCTA 58.107 33.333 0.00 0.00 0.00 2.59
166 167 7.611467 TCACACATATCAAGGCAAAATAAGTCT 59.389 33.333 0.00 0.00 0.00 3.24
167 168 7.761409 TCACACATATCAAGGCAAAATAAGTC 58.239 34.615 0.00 0.00 0.00 3.01
168 169 7.701539 TCACACATATCAAGGCAAAATAAGT 57.298 32.000 0.00 0.00 0.00 2.24
169 170 8.192774 ACATCACACATATCAAGGCAAAATAAG 58.807 33.333 0.00 0.00 0.00 1.73
170 171 8.065473 ACATCACACATATCAAGGCAAAATAA 57.935 30.769 0.00 0.00 0.00 1.40
171 172 7.643569 ACATCACACATATCAAGGCAAAATA 57.356 32.000 0.00 0.00 0.00 1.40
172 173 6.534475 ACATCACACATATCAAGGCAAAAT 57.466 33.333 0.00 0.00 0.00 1.82
173 174 5.981088 ACATCACACATATCAAGGCAAAA 57.019 34.783 0.00 0.00 0.00 2.44
174 175 5.981088 AACATCACACATATCAAGGCAAA 57.019 34.783 0.00 0.00 0.00 3.68
175 176 5.942826 TGTAACATCACACATATCAAGGCAA 59.057 36.000 0.00 0.00 0.00 4.52
176 177 5.353956 GTGTAACATCACACATATCAAGGCA 59.646 40.000 1.65 0.00 46.55 4.75
177 178 5.810525 GTGTAACATCACACATATCAAGGC 58.189 41.667 1.65 0.00 46.55 4.35
240 241 7.426410 TGATGTGGCAAGTAATAAACGAAAAA 58.574 30.769 0.00 0.00 0.00 1.94
241 242 6.971602 TGATGTGGCAAGTAATAAACGAAAA 58.028 32.000 0.00 0.00 0.00 2.29
242 243 6.561737 TGATGTGGCAAGTAATAAACGAAA 57.438 33.333 0.00 0.00 0.00 3.46
243 244 6.597672 AGATGATGTGGCAAGTAATAAACGAA 59.402 34.615 0.00 0.00 0.00 3.85
244 245 6.112734 AGATGATGTGGCAAGTAATAAACGA 58.887 36.000 0.00 0.00 0.00 3.85
245 246 6.363577 AGATGATGTGGCAAGTAATAAACG 57.636 37.500 0.00 0.00 0.00 3.60
251 252 9.851686 AGATAAAATAGATGATGTGGCAAGTAA 57.148 29.630 0.00 0.00 0.00 2.24
253 254 9.499479 CTAGATAAAATAGATGATGTGGCAAGT 57.501 33.333 0.00 0.00 0.00 3.16
254 255 9.716531 TCTAGATAAAATAGATGATGTGGCAAG 57.283 33.333 0.00 0.00 0.00 4.01
284 285 8.639761 GGAGTAACATAGGTAGTAACATCACAT 58.360 37.037 0.00 0.00 0.00 3.21
285 286 7.069085 GGGAGTAACATAGGTAGTAACATCACA 59.931 40.741 0.00 0.00 0.00 3.58
286 287 7.069085 TGGGAGTAACATAGGTAGTAACATCAC 59.931 40.741 0.00 0.00 0.00 3.06
287 288 7.069085 GTGGGAGTAACATAGGTAGTAACATCA 59.931 40.741 0.00 0.00 0.00 3.07
288 289 7.287235 AGTGGGAGTAACATAGGTAGTAACATC 59.713 40.741 0.00 0.00 0.00 3.06
289 290 7.069578 CAGTGGGAGTAACATAGGTAGTAACAT 59.930 40.741 0.00 0.00 0.00 2.71
290 291 6.379133 CAGTGGGAGTAACATAGGTAGTAACA 59.621 42.308 0.00 0.00 0.00 2.41
291 292 6.379417 ACAGTGGGAGTAACATAGGTAGTAAC 59.621 42.308 0.00 0.00 0.00 2.50
292 293 6.379133 CACAGTGGGAGTAACATAGGTAGTAA 59.621 42.308 0.00 0.00 0.00 2.24
293 294 5.889853 CACAGTGGGAGTAACATAGGTAGTA 59.110 44.000 0.00 0.00 0.00 1.82
294 295 4.710375 CACAGTGGGAGTAACATAGGTAGT 59.290 45.833 0.00 0.00 0.00 2.73
295 296 4.099573 CCACAGTGGGAGTAACATAGGTAG 59.900 50.000 12.40 0.00 32.67 3.18
296 297 4.028131 CCACAGTGGGAGTAACATAGGTA 58.972 47.826 12.40 0.00 32.67 3.08
297 298 2.838202 CCACAGTGGGAGTAACATAGGT 59.162 50.000 12.40 0.00 32.67 3.08
298 299 3.543680 CCACAGTGGGAGTAACATAGG 57.456 52.381 12.40 0.00 32.67 2.57
310 311 2.537143 ACCTTAGACTACCCACAGTGG 58.463 52.381 13.35 13.35 37.25 4.00
311 312 4.618920 AAACCTTAGACTACCCACAGTG 57.381 45.455 0.00 0.00 0.00 3.66
312 313 5.279156 CGTAAAACCTTAGACTACCCACAGT 60.279 44.000 0.00 0.00 0.00 3.55
313 314 5.166398 CGTAAAACCTTAGACTACCCACAG 58.834 45.833 0.00 0.00 0.00 3.66
314 315 4.021192 CCGTAAAACCTTAGACTACCCACA 60.021 45.833 0.00 0.00 0.00 4.17
315 316 4.220602 TCCGTAAAACCTTAGACTACCCAC 59.779 45.833 0.00 0.00 0.00 4.61
316 317 4.415596 TCCGTAAAACCTTAGACTACCCA 58.584 43.478 0.00 0.00 0.00 4.51
317 318 5.127682 TGATCCGTAAAACCTTAGACTACCC 59.872 44.000 0.00 0.00 0.00 3.69
318 319 6.212888 TGATCCGTAAAACCTTAGACTACC 57.787 41.667 0.00 0.00 0.00 3.18
319 320 6.533012 GGTTGATCCGTAAAACCTTAGACTAC 59.467 42.308 4.96 0.00 40.22 2.73
320 321 6.351286 GGGTTGATCCGTAAAACCTTAGACTA 60.351 42.308 10.71 0.00 42.50 2.59
321 322 5.485620 GGTTGATCCGTAAAACCTTAGACT 58.514 41.667 4.96 0.00 40.22 3.24
322 323 4.633126 GGGTTGATCCGTAAAACCTTAGAC 59.367 45.833 10.71 0.00 42.50 2.59
323 324 4.286549 TGGGTTGATCCGTAAAACCTTAGA 59.713 41.667 10.71 0.00 42.50 2.10
324 325 4.581868 TGGGTTGATCCGTAAAACCTTAG 58.418 43.478 10.71 0.00 42.50 2.18
325 326 4.637387 TGGGTTGATCCGTAAAACCTTA 57.363 40.909 10.71 0.51 42.50 2.69
326 327 3.512219 TGGGTTGATCCGTAAAACCTT 57.488 42.857 10.71 0.00 42.50 3.50
327 328 3.151554 GTTGGGTTGATCCGTAAAACCT 58.848 45.455 10.71 0.00 42.50 3.50
328 329 2.885894 TGTTGGGTTGATCCGTAAAACC 59.114 45.455 3.79 3.79 42.21 3.27
329 330 4.481463 CATGTTGGGTTGATCCGTAAAAC 58.519 43.478 0.00 0.00 37.00 2.43
330 331 3.508012 CCATGTTGGGTTGATCCGTAAAA 59.492 43.478 0.00 0.00 37.00 1.52
331 332 3.085533 CCATGTTGGGTTGATCCGTAAA 58.914 45.455 0.00 0.00 37.00 2.01
332 333 2.717390 CCATGTTGGGTTGATCCGTAA 58.283 47.619 0.00 0.00 37.00 3.18
333 334 1.680555 GCCATGTTGGGTTGATCCGTA 60.681 52.381 0.00 0.00 38.19 4.02
334 335 0.965363 GCCATGTTGGGTTGATCCGT 60.965 55.000 0.00 0.00 38.19 4.69
335 336 0.964860 TGCCATGTTGGGTTGATCCG 60.965 55.000 0.00 0.00 38.19 4.18
336 337 0.532115 GTGCCATGTTGGGTTGATCC 59.468 55.000 0.00 0.00 38.19 3.36
337 338 1.474077 GAGTGCCATGTTGGGTTGATC 59.526 52.381 0.00 0.00 38.19 2.92
338 339 1.076024 AGAGTGCCATGTTGGGTTGAT 59.924 47.619 0.00 0.00 38.19 2.57
339 340 0.478072 AGAGTGCCATGTTGGGTTGA 59.522 50.000 0.00 0.00 38.19 3.18
340 341 0.883833 GAGAGTGCCATGTTGGGTTG 59.116 55.000 0.00 0.00 38.19 3.77
341 342 0.606401 CGAGAGTGCCATGTTGGGTT 60.606 55.000 0.00 0.00 38.19 4.11
342 343 1.003355 CGAGAGTGCCATGTTGGGT 60.003 57.895 0.00 0.00 38.19 4.51
343 344 1.746615 CCGAGAGTGCCATGTTGGG 60.747 63.158 0.00 0.00 38.19 4.12
344 345 0.107508 ATCCGAGAGTGCCATGTTGG 60.108 55.000 0.00 0.00 41.55 3.77
345 346 1.742761 AATCCGAGAGTGCCATGTTG 58.257 50.000 0.00 0.00 0.00 3.33
346 347 2.086869 CAAATCCGAGAGTGCCATGTT 58.913 47.619 0.00 0.00 0.00 2.71
347 348 1.278985 TCAAATCCGAGAGTGCCATGT 59.721 47.619 0.00 0.00 0.00 3.21
348 349 1.667724 GTCAAATCCGAGAGTGCCATG 59.332 52.381 0.00 0.00 0.00 3.66
349 350 1.740380 CGTCAAATCCGAGAGTGCCAT 60.740 52.381 0.00 0.00 0.00 4.40
350 351 0.389817 CGTCAAATCCGAGAGTGCCA 60.390 55.000 0.00 0.00 0.00 4.92
351 352 0.389948 ACGTCAAATCCGAGAGTGCC 60.390 55.000 0.00 0.00 0.00 5.01
352 353 1.126846 CAACGTCAAATCCGAGAGTGC 59.873 52.381 0.00 0.00 0.00 4.40
353 354 1.726791 CCAACGTCAAATCCGAGAGTG 59.273 52.381 0.00 0.00 0.00 3.51
354 355 1.343465 ACCAACGTCAAATCCGAGAGT 59.657 47.619 0.00 0.00 0.00 3.24
355 356 2.080286 ACCAACGTCAAATCCGAGAG 57.920 50.000 0.00 0.00 0.00 3.20
356 357 2.536761 AACCAACGTCAAATCCGAGA 57.463 45.000 0.00 0.00 0.00 4.04
357 358 2.350388 CCAAACCAACGTCAAATCCGAG 60.350 50.000 0.00 0.00 0.00 4.63
358 359 1.604755 CCAAACCAACGTCAAATCCGA 59.395 47.619 0.00 0.00 0.00 4.55
359 360 1.335506 CCCAAACCAACGTCAAATCCG 60.336 52.381 0.00 0.00 0.00 4.18
360 361 1.684450 ACCCAAACCAACGTCAAATCC 59.316 47.619 0.00 0.00 0.00 3.01
361 362 3.566742 AGTACCCAAACCAACGTCAAATC 59.433 43.478 0.00 0.00 0.00 2.17
362 363 3.558033 AGTACCCAAACCAACGTCAAAT 58.442 40.909 0.00 0.00 0.00 2.32
363 364 3.002038 AGTACCCAAACCAACGTCAAA 57.998 42.857 0.00 0.00 0.00 2.69
364 365 2.683867 CAAGTACCCAAACCAACGTCAA 59.316 45.455 0.00 0.00 0.00 3.18
365 366 2.290464 CAAGTACCCAAACCAACGTCA 58.710 47.619 0.00 0.00 0.00 4.35
366 367 1.605232 CCAAGTACCCAAACCAACGTC 59.395 52.381 0.00 0.00 0.00 4.34
367 368 1.682740 CCAAGTACCCAAACCAACGT 58.317 50.000 0.00 0.00 0.00 3.99
368 369 0.312729 GCCAAGTACCCAAACCAACG 59.687 55.000 0.00 0.00 0.00 4.10
369 370 0.677288 GGCCAAGTACCCAAACCAAC 59.323 55.000 0.00 0.00 0.00 3.77
370 371 3.135027 GGCCAAGTACCCAAACCAA 57.865 52.632 0.00 0.00 0.00 3.67
371 372 4.934316 GGCCAAGTACCCAAACCA 57.066 55.556 0.00 0.00 0.00 3.67
378 379 2.675371 GAGGGTGGGCCAAGTACC 59.325 66.667 8.40 8.88 36.17 3.34
379 380 1.923909 AGGAGGGTGGGCCAAGTAC 60.924 63.158 8.40 0.00 36.17 2.73
380 381 1.923395 CAGGAGGGTGGGCCAAGTA 60.923 63.158 8.40 0.00 36.17 2.24
381 382 3.260100 CAGGAGGGTGGGCCAAGT 61.260 66.667 8.40 0.00 36.17 3.16
382 383 2.080336 TTTCAGGAGGGTGGGCCAAG 62.080 60.000 8.40 0.00 36.17 3.61
383 384 1.442886 ATTTCAGGAGGGTGGGCCAA 61.443 55.000 8.40 0.00 36.17 4.52
384 385 1.442886 AATTTCAGGAGGGTGGGCCA 61.443 55.000 0.00 0.00 36.17 5.36
385 386 0.684479 GAATTTCAGGAGGGTGGGCC 60.684 60.000 0.00 0.00 0.00 5.80
386 387 0.684479 GGAATTTCAGGAGGGTGGGC 60.684 60.000 0.00 0.00 0.00 5.36
387 388 0.394352 CGGAATTTCAGGAGGGTGGG 60.394 60.000 0.00 0.00 0.00 4.61
388 389 0.394352 CCGGAATTTCAGGAGGGTGG 60.394 60.000 9.73 0.00 33.29 4.61
389 390 0.394352 CCCGGAATTTCAGGAGGGTG 60.394 60.000 16.10 0.00 33.29 4.61
390 391 1.571773 CCCCGGAATTTCAGGAGGGT 61.572 60.000 16.10 0.00 33.29 4.34
391 392 1.227383 CCCCGGAATTTCAGGAGGG 59.773 63.158 16.10 12.60 33.29 4.30
392 393 1.227383 CCCCCGGAATTTCAGGAGG 59.773 63.158 16.10 9.25 33.29 4.30
393 394 4.986467 CCCCCGGAATTTCAGGAG 57.014 61.111 16.10 3.75 33.29 3.69
412 413 1.144612 AAACTAACCACCCCTCCCCC 61.145 60.000 0.00 0.00 0.00 5.40
413 414 0.039180 CAAACTAACCACCCCTCCCC 59.961 60.000 0.00 0.00 0.00 4.81
414 415 0.611062 GCAAACTAACCACCCCTCCC 60.611 60.000 0.00 0.00 0.00 4.30
415 416 0.111639 TGCAAACTAACCACCCCTCC 59.888 55.000 0.00 0.00 0.00 4.30
416 417 1.244816 GTGCAAACTAACCACCCCTC 58.755 55.000 0.00 0.00 0.00 4.30
417 418 0.178973 GGTGCAAACTAACCACCCCT 60.179 55.000 0.00 0.00 42.44 4.79
418 419 2.347630 GGTGCAAACTAACCACCCC 58.652 57.895 0.00 0.00 42.44 4.95
420 421 0.820482 ACGGGTGCAAACTAACCACC 60.820 55.000 0.00 0.54 46.40 4.61
421 422 1.881591 TACGGGTGCAAACTAACCAC 58.118 50.000 0.00 0.00 38.27 4.16
422 423 2.616001 GGATACGGGTGCAAACTAACCA 60.616 50.000 0.00 0.00 38.27 3.67
442 443 5.053811 AGCCCAAAAATAAAAGAACAACGG 58.946 37.500 0.00 0.00 0.00 4.44
478 479 3.541130 CGATTACACACGTAGAAAGGTCG 59.459 47.826 0.00 0.00 0.00 4.79
628 629 4.820744 GTGCCATGCCGACCCCAT 62.821 66.667 0.00 0.00 0.00 4.00
832 834 3.573491 GCCCGTGCTAATCGTGCC 61.573 66.667 0.00 0.00 33.53 5.01
884 887 1.694639 CCGGTTCTCGTGTAACTGTC 58.305 55.000 0.00 0.00 37.11 3.51
886 889 1.012486 GGCCGGTTCTCGTGTAACTG 61.012 60.000 1.90 0.00 37.11 3.16
889 892 1.290955 CAGGCCGGTTCTCGTGTAA 59.709 57.895 1.90 0.00 37.11 2.41
891 894 4.003788 CCAGGCCGGTTCTCGTGT 62.004 66.667 1.90 0.00 37.11 4.49
957 1409 2.159430 CGAGTCAGTGAGAGAGACACAG 59.841 54.545 0.00 0.00 40.25 3.66
1020 1472 1.152839 GAGGACGAGGAGGAGGAGG 60.153 68.421 0.00 0.00 0.00 4.30
1021 1473 1.152839 GGAGGACGAGGAGGAGGAG 60.153 68.421 0.00 0.00 0.00 3.69
1022 1474 3.008408 GGAGGACGAGGAGGAGGA 58.992 66.667 0.00 0.00 0.00 3.71
1255 1707 4.063967 CGTGCGGTACCAGGAGCA 62.064 66.667 13.54 10.47 37.26 4.26
1497 1949 2.565647 CATGAAATGGTCGTGCCCA 58.434 52.632 0.00 0.00 41.79 5.36
2384 2839 4.041444 ACCAAGAGAATGTCTTCAAGAGCT 59.959 41.667 0.00 0.00 44.28 4.09
2540 3003 5.640357 ACTTGAACCATAGCAAATGCAAATG 59.360 36.000 8.28 10.30 45.16 2.32
2541 3004 5.797051 ACTTGAACCATAGCAAATGCAAAT 58.203 33.333 8.28 0.00 45.16 2.32
2543 3006 4.523943 AGACTTGAACCATAGCAAATGCAA 59.476 37.500 8.28 0.00 45.16 4.08
2544 3007 4.081406 AGACTTGAACCATAGCAAATGCA 58.919 39.130 8.28 0.00 45.16 3.96
2545 3008 4.082571 ACAGACTTGAACCATAGCAAATGC 60.083 41.667 0.00 0.00 42.49 3.56
2546 3009 5.633830 ACAGACTTGAACCATAGCAAATG 57.366 39.130 0.00 0.00 0.00 2.32
2547 3010 7.944729 AATACAGACTTGAACCATAGCAAAT 57.055 32.000 0.00 0.00 0.00 2.32
2548 3011 7.759489 AAATACAGACTTGAACCATAGCAAA 57.241 32.000 0.00 0.00 0.00 3.68
2549 3012 7.446931 TGAAAATACAGACTTGAACCATAGCAA 59.553 33.333 0.00 0.00 0.00 3.91
2550 3013 6.939730 TGAAAATACAGACTTGAACCATAGCA 59.060 34.615 0.00 0.00 0.00 3.49
2551 3014 7.377766 TGAAAATACAGACTTGAACCATAGC 57.622 36.000 0.00 0.00 0.00 2.97
2560 3058 7.965107 GCTCTAAACCATGAAAATACAGACTTG 59.035 37.037 0.00 0.00 0.00 3.16
2583 3081 5.824904 ATGTGATCATAACCAGTTTGCTC 57.175 39.130 0.00 0.00 31.89 4.26
2584 3082 5.711506 TGAATGTGATCATAACCAGTTTGCT 59.288 36.000 0.00 0.00 33.49 3.91
2606 3104 4.274602 TCCCGCAAAAAGTAGTATGTGA 57.725 40.909 0.00 0.00 0.00 3.58
2607 3105 6.671614 TTATCCCGCAAAAAGTAGTATGTG 57.328 37.500 0.00 0.00 0.00 3.21
2608 3106 8.208903 ACTATTATCCCGCAAAAAGTAGTATGT 58.791 33.333 0.00 0.00 0.00 2.29
2609 3107 8.603242 ACTATTATCCCGCAAAAAGTAGTATG 57.397 34.615 0.00 0.00 0.00 2.39
2612 3110 7.147602 ACCTACTATTATCCCGCAAAAAGTAGT 60.148 37.037 0.00 0.00 35.51 2.73
2615 3113 5.997843 ACCTACTATTATCCCGCAAAAAGT 58.002 37.500 0.00 0.00 0.00 2.66
2616 3114 8.617290 AATACCTACTATTATCCCGCAAAAAG 57.383 34.615 0.00 0.00 0.00 2.27
2620 3118 9.880157 GAATAAATACCTACTATTATCCCGCAA 57.120 33.333 0.00 0.00 0.00 4.85
2621 3119 8.480501 GGAATAAATACCTACTATTATCCCGCA 58.519 37.037 0.00 0.00 0.00 5.69
2622 3120 8.702819 AGGAATAAATACCTACTATTATCCCGC 58.297 37.037 0.00 0.00 34.47 6.13
2652 3150 8.147642 AGATTGTATTAGCAGCAACACTATTC 57.852 34.615 0.00 0.00 0.00 1.75
2662 3160 5.228012 GCGTCAAAAAGATTGTATTAGCAGC 59.772 40.000 0.00 0.00 0.00 5.25
2678 3176 1.668751 GTGTTCCAGACAGCGTCAAAA 59.331 47.619 10.52 0.83 39.39 2.44
2709 3207 1.001158 GATCTAGAGGTAGCACCGTGC 60.001 57.143 16.04 16.04 44.90 5.34
2710 3208 2.550606 GAGATCTAGAGGTAGCACCGTG 59.449 54.545 0.00 0.00 44.90 4.94
2711 3209 2.487625 GGAGATCTAGAGGTAGCACCGT 60.488 54.545 0.00 0.00 44.90 4.83
2712 3210 2.156098 GGAGATCTAGAGGTAGCACCG 58.844 57.143 0.00 0.00 44.90 4.94
2713 3211 2.109304 AGGGAGATCTAGAGGTAGCACC 59.891 54.545 0.00 0.00 38.99 5.01
2714 3212 3.153919 CAGGGAGATCTAGAGGTAGCAC 58.846 54.545 0.00 0.00 0.00 4.40
2715 3213 2.489985 GCAGGGAGATCTAGAGGTAGCA 60.490 54.545 0.00 0.00 0.00 3.49
2716 3214 2.167662 GCAGGGAGATCTAGAGGTAGC 58.832 57.143 0.00 0.00 0.00 3.58
2731 3229 1.760613 TCGTAAGGTCCAATAGCAGGG 59.239 52.381 0.00 0.00 38.47 4.45
2777 3275 8.581253 AGCATTAAAATATATCCCAGGCTTAC 57.419 34.615 0.00 0.00 0.00 2.34
2778 3276 9.600432 AAAGCATTAAAATATATCCCAGGCTTA 57.400 29.630 0.00 0.00 35.86 3.09
2798 3296 6.593770 TGTTATGTGAATCACGTAGAAAGCAT 59.406 34.615 14.13 0.00 37.20 3.79
2799 3297 5.929415 TGTTATGTGAATCACGTAGAAAGCA 59.071 36.000 14.13 2.61 37.20 3.91
2800 3298 6.403333 TGTTATGTGAATCACGTAGAAAGC 57.597 37.500 14.13 0.15 37.20 3.51
2884 3382 8.647143 AAAAACCAATGGCATAATCTTATTCG 57.353 30.769 0.00 0.00 0.00 3.34
2893 3391 4.608948 AACCGAAAAACCAATGGCATAA 57.391 36.364 0.00 0.00 0.00 1.90
2894 3392 5.010933 TCTAACCGAAAAACCAATGGCATA 58.989 37.500 0.00 0.00 0.00 3.14
2939 3437 1.360194 AAACACGTCCGTTTGCGTCA 61.360 50.000 3.44 0.00 39.48 4.35
2942 3440 2.932906 AAAAACACGTCCGTTTGCG 58.067 47.368 4.93 0.00 39.04 4.85
2982 3480 0.531532 CATCACACCTCCAGCCGATC 60.532 60.000 0.00 0.00 0.00 3.69
2991 3489 2.100631 CGGCCGAACATCACACCTC 61.101 63.158 24.07 0.00 0.00 3.85
3007 3505 1.970917 GCAGATTTGAGCGGACACGG 61.971 60.000 0.00 0.00 41.36 4.94
3025 3523 3.818787 CTGTTGGGCGCATCAGGC 61.819 66.667 26.20 4.87 39.90 4.85
3061 3559 9.793252 TTTAGATTAAATTTGCTTCAGATGAGC 57.207 29.630 0.00 0.00 0.00 4.26
3090 3588 2.682494 TAGTGGTCGACCTGGCCC 60.682 66.667 33.39 16.39 36.82 5.80
3091 3589 2.722201 CCTAGTGGTCGACCTGGCC 61.722 68.421 33.39 18.70 36.82 5.36
3097 3595 2.614983 GAGAGACATCCTAGTGGTCGAC 59.385 54.545 7.13 7.13 36.68 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.