Multiple sequence alignment - TraesCS1D01G213300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G213300 chr1D 100.000 2363 0 0 1 2363 298621126 298618764 0.000000e+00 4364
1 TraesCS1D01G213300 chr1D 78.927 261 47 5 1098 1354 298635694 298635950 1.120000e-38 171
2 TraesCS1D01G213300 chr1D 79.762 168 29 4 1191 1354 298574058 298573892 1.480000e-22 117
3 TraesCS1D01G213300 chr1B 96.595 1263 30 5 560 1822 402051537 402050288 0.000000e+00 2082
4 TraesCS1D01G213300 chr1B 90.672 536 22 12 1822 2357 42075503 42076010 0.000000e+00 688
5 TraesCS1D01G213300 chr1B 92.857 112 8 0 167 278 536657399 536657510 1.880000e-36 163
6 TraesCS1D01G213300 chr1A 94.823 1043 32 12 546 1578 372468382 372467352 0.000000e+00 1607
7 TraesCS1D01G213300 chr1A 92.683 246 18 0 1577 1822 372465268 372465023 2.890000e-94 355
8 TraesCS1D01G213300 chr1A 80.473 169 25 6 1190 1354 372530501 372530665 3.190000e-24 122
9 TraesCS1D01G213300 chr4B 85.634 536 46 16 1822 2357 139794134 139794638 3.460000e-148 534
10 TraesCS1D01G213300 chr4B 95.985 274 7 2 2088 2357 657664275 657664002 2.160000e-120 442
11 TraesCS1D01G213300 chr4B 94.681 282 15 0 1822 2103 657664595 657664314 2.790000e-119 438
12 TraesCS1D01G213300 chrUn 95.410 305 14 0 1822 2126 258942980 258943284 9.820000e-134 486
13 TraesCS1D01G213300 chrUn 94.937 237 10 2 2123 2357 258943251 258943487 1.030000e-98 370
14 TraesCS1D01G213300 chr3D 95.130 308 15 0 1822 2129 605318438 605318131 9.820000e-134 486
15 TraesCS1D01G213300 chr3D 92.337 261 19 1 268 527 556932472 556932732 1.030000e-98 370
16 TraesCS1D01G213300 chr3D 97.248 218 6 0 2140 2357 605318148 605317931 1.030000e-98 370
17 TraesCS1D01G213300 chr3D 91.954 261 20 1 268 527 582158101 582157841 4.800000e-97 364
18 TraesCS1D01G213300 chr3D 92.105 114 7 2 158 271 603574474 603574585 2.430000e-35 159
19 TraesCS1D01G213300 chr5A 90.164 305 28 2 1822 2126 503619269 503619571 1.700000e-106 396
20 TraesCS1D01G213300 chr5D 93.846 260 16 0 268 527 255864918 255865177 2.200000e-105 392
21 TraesCS1D01G213300 chr7A 92.692 260 19 0 268 527 728179039 728178780 2.220000e-100 375
22 TraesCS1D01G213300 chr7A 92.692 260 19 0 268 527 728210002 728209743 2.220000e-100 375
23 TraesCS1D01G213300 chr7A 92.308 260 19 1 268 527 337600603 337600345 3.710000e-98 368
24 TraesCS1D01G213300 chr7A 86.262 313 32 7 1822 2126 345229348 345229657 1.750000e-86 329
25 TraesCS1D01G213300 chr7A 97.087 103 2 1 169 271 475968471 475968572 3.120000e-39 172
26 TraesCS1D01G213300 chr7A 84.921 126 17 1 2230 2353 345230041 345230166 2.470000e-25 126
27 TraesCS1D01G213300 chr6B 92.337 261 18 2 268 527 457223226 457223485 1.030000e-98 370
28 TraesCS1D01G213300 chr6B 95.238 105 5 0 167 271 424080607 424080503 1.450000e-37 167
29 TraesCS1D01G213300 chr6B 95.238 105 5 0 167 271 424303320 424303216 1.450000e-37 167
30 TraesCS1D01G213300 chr6B 93.396 106 6 1 167 272 300732373 300732269 3.140000e-34 156
31 TraesCS1D01G213300 chr2B 92.337 261 19 1 268 527 45649265 45649525 1.030000e-98 370
32 TraesCS1D01G213300 chr2B 94.286 105 6 0 174 278 403101707 403101603 6.760000e-36 161
33 TraesCS1D01G213300 chr6D 91.923 260 21 0 268 527 163382953 163383212 4.800000e-97 364
34 TraesCS1D01G213300 chr6D 95.370 108 3 2 165 271 57898586 57898692 1.120000e-38 171
35 TraesCS1D01G213300 chr4D 87.821 312 29 4 1822 2126 415476577 415476886 8.030000e-95 357
36 TraesCS1D01G213300 chr4D 90.783 217 20 0 2141 2357 415476873 415477089 8.260000e-75 291
37 TraesCS1D01G213300 chr5B 95.238 105 5 0 167 271 50175729 50175625 1.450000e-37 167
38 TraesCS1D01G213300 chr3B 85.714 133 16 3 175 306 9398943 9398813 1.140000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G213300 chr1D 298618764 298621126 2362 True 4364.0 4364 100.0000 1 2363 1 chr1D.!!$R2 2362
1 TraesCS1D01G213300 chr1B 402050288 402051537 1249 True 2082.0 2082 96.5950 560 1822 1 chr1B.!!$R1 1262
2 TraesCS1D01G213300 chr1B 42075503 42076010 507 False 688.0 688 90.6720 1822 2357 1 chr1B.!!$F1 535
3 TraesCS1D01G213300 chr1A 372465023 372468382 3359 True 981.0 1607 93.7530 546 1822 2 chr1A.!!$R1 1276
4 TraesCS1D01G213300 chr4B 139794134 139794638 504 False 534.0 534 85.6340 1822 2357 1 chr4B.!!$F1 535
5 TraesCS1D01G213300 chr4B 657664002 657664595 593 True 440.0 442 95.3330 1822 2357 2 chr4B.!!$R1 535
6 TraesCS1D01G213300 chrUn 258942980 258943487 507 False 428.0 486 95.1735 1822 2357 2 chrUn.!!$F1 535
7 TraesCS1D01G213300 chr3D 605317931 605318438 507 True 428.0 486 96.1890 1822 2357 2 chr3D.!!$R2 535
8 TraesCS1D01G213300 chr7A 345229348 345230166 818 False 227.5 329 85.5915 1822 2353 2 chr7A.!!$F2 531
9 TraesCS1D01G213300 chr4D 415476577 415477089 512 False 324.0 357 89.3020 1822 2357 2 chr4D.!!$F1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.0 0.0 0.0 0.0 3.28 F
531 532 0.259647 CCCATTGCCATCCCTCTTCA 59.740 55.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1275 1281 0.252330 TGGGGACGTTGAGGTGGATA 60.252 55.0 0.0 0.0 0.0 2.59 R
1838 3934 0.318614 CAAAATTCCCGCAGCAACGT 60.319 50.0 0.0 0.0 0.0 3.99 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 9.515226 ACATACTTATAAACAACAACACATCCT 57.485 29.630 0.00 0.00 0.00 3.24
97 98 8.865590 ATAAACAACAACACATCCTAAACAAC 57.134 30.769 0.00 0.00 0.00 3.32
98 99 5.906113 ACAACAACACATCCTAAACAACA 57.094 34.783 0.00 0.00 0.00 3.33
99 100 6.274157 ACAACAACACATCCTAAACAACAA 57.726 33.333 0.00 0.00 0.00 2.83
100 101 6.096695 ACAACAACACATCCTAAACAACAAC 58.903 36.000 0.00 0.00 0.00 3.32
101 102 5.906113 ACAACACATCCTAAACAACAACA 57.094 34.783 0.00 0.00 0.00 3.33
102 103 5.646606 ACAACACATCCTAAACAACAACAC 58.353 37.500 0.00 0.00 0.00 3.32
103 104 5.184096 ACAACACATCCTAAACAACAACACA 59.816 36.000 0.00 0.00 0.00 3.72
104 105 6.127479 ACAACACATCCTAAACAACAACACAT 60.127 34.615 0.00 0.00 0.00 3.21
105 106 6.463995 ACACATCCTAAACAACAACACATT 57.536 33.333 0.00 0.00 0.00 2.71
106 107 6.503524 ACACATCCTAAACAACAACACATTC 58.496 36.000 0.00 0.00 0.00 2.67
107 108 6.321181 ACACATCCTAAACAACAACACATTCT 59.679 34.615 0.00 0.00 0.00 2.40
108 109 7.500892 ACACATCCTAAACAACAACACATTCTA 59.499 33.333 0.00 0.00 0.00 2.10
109 110 8.514594 CACATCCTAAACAACAACACATTCTAT 58.485 33.333 0.00 0.00 0.00 1.98
110 111 8.514594 ACATCCTAAACAACAACACATTCTATG 58.485 33.333 0.00 0.00 0.00 2.23
111 112 8.729756 CATCCTAAACAACAACACATTCTATGA 58.270 33.333 0.00 0.00 0.00 2.15
112 113 8.684386 TCCTAAACAACAACACATTCTATGAA 57.316 30.769 0.00 0.00 0.00 2.57
113 114 9.126151 TCCTAAACAACAACACATTCTATGAAA 57.874 29.630 0.00 0.00 0.00 2.69
114 115 9.743057 CCTAAACAACAACACATTCTATGAAAA 57.257 29.630 0.00 0.00 0.00 2.29
118 119 9.814899 AACAACAACACATTCTATGAAAAATCA 57.185 25.926 0.00 0.00 0.00 2.57
119 120 9.814899 ACAACAACACATTCTATGAAAAATCAA 57.185 25.926 0.00 0.00 0.00 2.57
121 122 9.814899 AACAACACATTCTATGAAAAATCAACA 57.185 25.926 0.00 0.00 0.00 3.33
122 123 9.248291 ACAACACATTCTATGAAAAATCAACAC 57.752 29.630 0.00 0.00 0.00 3.32
123 124 8.702438 CAACACATTCTATGAAAAATCAACACC 58.298 33.333 0.00 0.00 0.00 4.16
124 125 8.181904 ACACATTCTATGAAAAATCAACACCT 57.818 30.769 0.00 0.00 0.00 4.00
125 126 8.641541 ACACATTCTATGAAAAATCAACACCTT 58.358 29.630 0.00 0.00 0.00 3.50
126 127 9.132521 CACATTCTATGAAAAATCAACACCTTC 57.867 33.333 0.00 0.00 0.00 3.46
127 128 9.082313 ACATTCTATGAAAAATCAACACCTTCT 57.918 29.630 0.00 0.00 0.00 2.85
128 129 9.918630 CATTCTATGAAAAATCAACACCTTCTT 57.081 29.630 0.00 0.00 0.00 2.52
129 130 9.918630 ATTCTATGAAAAATCAACACCTTCTTG 57.081 29.630 0.00 0.00 0.00 3.02
130 131 8.463930 TCTATGAAAAATCAACACCTTCTTGT 57.536 30.769 0.00 0.00 0.00 3.16
131 132 9.567776 TCTATGAAAAATCAACACCTTCTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
134 135 8.696410 TGAAAAATCAACACCTTCTTGTAAAC 57.304 30.769 0.00 0.00 0.00 2.01
135 136 8.307483 TGAAAAATCAACACCTTCTTGTAAACA 58.693 29.630 0.00 0.00 0.00 2.83
136 137 9.145865 GAAAAATCAACACCTTCTTGTAAACAA 57.854 29.630 0.00 0.00 0.00 2.83
137 138 9.665719 AAAAATCAACACCTTCTTGTAAACAAT 57.334 25.926 0.00 0.00 35.02 2.71
140 141 9.744468 AATCAACACCTTCTTGTAAACAATAAC 57.256 29.630 0.00 0.00 35.02 1.89
141 142 8.282455 TCAACACCTTCTTGTAAACAATAACA 57.718 30.769 0.00 0.00 35.02 2.41
142 143 8.185505 TCAACACCTTCTTGTAAACAATAACAC 58.814 33.333 0.00 0.00 35.02 3.32
143 144 7.633193 ACACCTTCTTGTAAACAATAACACA 57.367 32.000 0.00 0.00 35.02 3.72
144 145 8.232913 ACACCTTCTTGTAAACAATAACACAT 57.767 30.769 0.00 0.00 35.02 3.21
145 146 8.349983 ACACCTTCTTGTAAACAATAACACATC 58.650 33.333 0.00 0.00 35.02 3.06
146 147 8.349245 CACCTTCTTGTAAACAATAACACATCA 58.651 33.333 0.00 0.00 35.02 3.07
147 148 8.908903 ACCTTCTTGTAAACAATAACACATCAA 58.091 29.630 0.00 0.00 35.02 2.57
148 149 9.743057 CCTTCTTGTAAACAATAACACATCAAA 57.257 29.630 0.00 0.00 35.02 2.69
184 185 7.941431 ATAGTCATAAATAGTACTCCCTCCG 57.059 40.000 0.00 0.00 0.00 4.63
185 186 5.703310 AGTCATAAATAGTACTCCCTCCGT 58.297 41.667 0.00 0.00 0.00 4.69
186 187 5.769162 AGTCATAAATAGTACTCCCTCCGTC 59.231 44.000 0.00 0.00 0.00 4.79
187 188 5.048154 GTCATAAATAGTACTCCCTCCGTCC 60.048 48.000 0.00 0.00 0.00 4.79
188 189 2.378378 AATAGTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
189 190 1.229131 ATAGTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
190 191 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
191 192 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
192 193 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
193 194 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
194 195 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
195 196 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
196 197 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
197 198 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
198 199 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
199 200 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
200 201 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
201 202 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
202 203 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
203 204 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
204 205 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
205 206 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
206 207 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
207 208 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
208 209 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
209 210 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
210 211 6.655003 TCCCAAAATAAGTGTCTTGAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
211 212 6.431234 CCCAAAATAAGTGTCTTGAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
212 213 7.606456 CCCAAAATAAGTGTCTTGAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
213 214 8.443937 CCAAAATAAGTGTCTTGAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
214 215 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
215 216 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
216 217 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
217 218 9.726438 AATAAGTGTCTTGAGCTTAGTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
218 219 9.726438 ATAAGTGTCTTGAGCTTAGTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
219 220 8.451908 AAGTGTCTTGAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
220 221 9.555727 AAGTGTCTTGAGCTTAGTACAAATTTA 57.444 29.630 0.00 0.00 0.00 1.40
221 222 9.726438 AGTGTCTTGAGCTTAGTACAAATTTAT 57.274 29.630 0.00 0.00 0.00 1.40
247 248 7.520451 TTAGAGCTAGTACAAAGTTGAGACA 57.480 36.000 0.00 0.00 0.00 3.41
248 249 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
249 250 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
250 251 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
251 252 7.230913 AGAGCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
252 253 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
253 254 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
254 255 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
257 258 9.391006 AGTACAAAGTTGAGACACTTATTTTGA 57.609 29.630 0.00 0.00 35.87 2.69
258 259 9.651718 GTACAAAGTTGAGACACTTATTTTGAG 57.348 33.333 0.00 0.00 35.87 3.02
259 260 8.506168 ACAAAGTTGAGACACTTATTTTGAGA 57.494 30.769 0.00 0.00 35.87 3.27
260 261 8.398665 ACAAAGTTGAGACACTTATTTTGAGAC 58.601 33.333 0.00 0.00 35.87 3.36
261 262 6.771188 AGTTGAGACACTTATTTTGAGACG 57.229 37.500 0.00 0.00 0.00 4.18
262 263 6.513180 AGTTGAGACACTTATTTTGAGACGA 58.487 36.000 0.00 0.00 0.00 4.20
263 264 6.984474 AGTTGAGACACTTATTTTGAGACGAA 59.016 34.615 0.00 0.00 0.00 3.85
264 265 7.169982 AGTTGAGACACTTATTTTGAGACGAAG 59.830 37.037 0.00 0.00 0.00 3.79
265 266 5.926542 TGAGACACTTATTTTGAGACGAAGG 59.073 40.000 0.00 0.00 0.00 3.46
266 267 6.097915 AGACACTTATTTTGAGACGAAGGA 57.902 37.500 0.00 0.00 0.00 3.36
267 268 6.522054 AGACACTTATTTTGAGACGAAGGAA 58.478 36.000 0.00 0.00 0.00 3.36
268 269 6.647067 AGACACTTATTTTGAGACGAAGGAAG 59.353 38.462 0.00 0.00 0.00 3.46
269 270 6.289064 ACACTTATTTTGAGACGAAGGAAGT 58.711 36.000 0.00 0.00 0.00 3.01
270 271 7.439381 ACACTTATTTTGAGACGAAGGAAGTA 58.561 34.615 0.00 0.00 0.00 2.24
271 272 7.599245 ACACTTATTTTGAGACGAAGGAAGTAG 59.401 37.037 0.00 0.00 0.00 2.57
272 273 6.590677 ACTTATTTTGAGACGAAGGAAGTAGC 59.409 38.462 0.00 0.00 0.00 3.58
273 274 4.330944 TTTTGAGACGAAGGAAGTAGCA 57.669 40.909 0.00 0.00 0.00 3.49
274 275 3.299340 TTGAGACGAAGGAAGTAGCAC 57.701 47.619 0.00 0.00 0.00 4.40
275 276 2.235891 TGAGACGAAGGAAGTAGCACA 58.764 47.619 0.00 0.00 0.00 4.57
276 277 2.826128 TGAGACGAAGGAAGTAGCACAT 59.174 45.455 0.00 0.00 0.00 3.21
277 278 4.014406 TGAGACGAAGGAAGTAGCACATA 58.986 43.478 0.00 0.00 0.00 2.29
278 279 4.096532 TGAGACGAAGGAAGTAGCACATAG 59.903 45.833 0.00 0.00 0.00 2.23
279 280 4.017808 AGACGAAGGAAGTAGCACATAGT 58.982 43.478 0.00 0.00 0.00 2.12
280 281 4.096682 AGACGAAGGAAGTAGCACATAGTC 59.903 45.833 0.00 0.00 0.00 2.59
281 282 3.762288 ACGAAGGAAGTAGCACATAGTCA 59.238 43.478 0.00 0.00 0.00 3.41
282 283 4.402793 ACGAAGGAAGTAGCACATAGTCAT 59.597 41.667 0.00 0.00 0.00 3.06
283 284 5.593095 ACGAAGGAAGTAGCACATAGTCATA 59.407 40.000 0.00 0.00 0.00 2.15
284 285 5.915758 CGAAGGAAGTAGCACATAGTCATAC 59.084 44.000 0.00 0.00 0.00 2.39
285 286 6.459710 CGAAGGAAGTAGCACATAGTCATACA 60.460 42.308 0.00 0.00 0.00 2.29
286 287 6.985653 AGGAAGTAGCACATAGTCATACAT 57.014 37.500 0.00 0.00 0.00 2.29
287 288 7.366847 AGGAAGTAGCACATAGTCATACATT 57.633 36.000 0.00 0.00 0.00 2.71
288 289 7.796054 AGGAAGTAGCACATAGTCATACATTT 58.204 34.615 0.00 0.00 0.00 2.32
289 290 7.928706 AGGAAGTAGCACATAGTCATACATTTC 59.071 37.037 0.00 0.00 0.00 2.17
290 291 7.710907 GGAAGTAGCACATAGTCATACATTTCA 59.289 37.037 0.00 0.00 0.00 2.69
291 292 9.098355 GAAGTAGCACATAGTCATACATTTCAA 57.902 33.333 0.00 0.00 0.00 2.69
292 293 9.448438 AAGTAGCACATAGTCATACATTTCAAA 57.552 29.630 0.00 0.00 0.00 2.69
293 294 9.618890 AGTAGCACATAGTCATACATTTCAAAT 57.381 29.630 0.00 0.00 0.00 2.32
296 297 8.959548 AGCACATAGTCATACATTTCAAATTGA 58.040 29.630 0.00 0.00 0.00 2.57
297 298 9.013490 GCACATAGTCATACATTTCAAATTGAC 57.987 33.333 5.58 5.58 34.99 3.18
303 304 9.683069 AGTCATACATTTCAAATTGACAAACTC 57.317 29.630 13.50 0.00 36.74 3.01
304 305 9.462174 GTCATACATTTCAAATTGACAAACTCA 57.538 29.630 8.10 0.00 34.92 3.41
308 309 8.356533 ACATTTCAAATTGACAAACTCATGAC 57.643 30.769 0.00 0.00 0.00 3.06
309 310 7.980662 ACATTTCAAATTGACAAACTCATGACA 59.019 29.630 0.00 0.00 0.00 3.58
310 311 8.819015 CATTTCAAATTGACAAACTCATGACAA 58.181 29.630 0.00 0.00 38.82 3.18
311 312 8.768957 TTTCAAATTGACAAACTCATGACAAA 57.231 26.923 0.00 0.00 38.19 2.83
312 313 7.990541 TCAAATTGACAAACTCATGACAAAG 57.009 32.000 0.00 0.00 38.19 2.77
313 314 7.546358 TCAAATTGACAAACTCATGACAAAGT 58.454 30.769 0.00 0.00 38.19 2.66
314 315 7.488792 TCAAATTGACAAACTCATGACAAAGTG 59.511 33.333 0.00 0.00 38.19 3.16
315 316 5.895636 TTGACAAACTCATGACAAAGTGT 57.104 34.783 0.00 0.00 33.29 3.55
316 317 6.993786 TTGACAAACTCATGACAAAGTGTA 57.006 33.333 0.00 0.00 33.29 2.90
317 318 6.603237 TGACAAACTCATGACAAAGTGTAG 57.397 37.500 0.00 0.00 0.00 2.74
318 319 6.345298 TGACAAACTCATGACAAAGTGTAGA 58.655 36.000 0.00 0.00 0.00 2.59
319 320 6.479990 TGACAAACTCATGACAAAGTGTAGAG 59.520 38.462 0.00 0.00 33.12 2.43
320 321 5.760253 ACAAACTCATGACAAAGTGTAGAGG 59.240 40.000 0.00 0.00 31.96 3.69
321 322 5.552870 AACTCATGACAAAGTGTAGAGGT 57.447 39.130 0.00 0.00 31.96 3.85
322 323 6.665992 AACTCATGACAAAGTGTAGAGGTA 57.334 37.500 0.00 0.00 31.96 3.08
323 324 6.665992 ACTCATGACAAAGTGTAGAGGTAA 57.334 37.500 0.00 0.00 31.96 2.85
324 325 7.246171 ACTCATGACAAAGTGTAGAGGTAAT 57.754 36.000 0.00 0.00 31.96 1.89
325 326 7.680730 ACTCATGACAAAGTGTAGAGGTAATT 58.319 34.615 0.00 0.00 31.96 1.40
326 327 8.157476 ACTCATGACAAAGTGTAGAGGTAATTT 58.843 33.333 0.00 0.00 31.96 1.82
327 328 9.653287 CTCATGACAAAGTGTAGAGGTAATTTA 57.347 33.333 0.00 0.00 0.00 1.40
330 331 9.614792 ATGACAAAGTGTAGAGGTAATTTATCC 57.385 33.333 0.00 0.00 0.00 2.59
331 332 8.598916 TGACAAAGTGTAGAGGTAATTTATCCA 58.401 33.333 0.00 0.00 0.00 3.41
332 333 9.614792 GACAAAGTGTAGAGGTAATTTATCCAT 57.385 33.333 0.00 0.00 0.00 3.41
361 362 9.635404 TTGTTAGATTTTATAAGGGTACATGGG 57.365 33.333 0.00 0.00 0.00 4.00
362 363 8.783903 TGTTAGATTTTATAAGGGTACATGGGT 58.216 33.333 0.00 0.00 0.00 4.51
366 367 7.888546 AGATTTTATAAGGGTACATGGGTATGC 59.111 37.037 0.00 0.00 37.85 3.14
367 368 3.695830 ATAAGGGTACATGGGTATGCG 57.304 47.619 0.00 0.00 37.85 4.73
368 369 0.472471 AAGGGTACATGGGTATGCGG 59.528 55.000 0.00 0.00 37.85 5.69
369 370 1.072505 GGGTACATGGGTATGCGGG 59.927 63.158 0.00 0.00 37.85 6.13
370 371 1.702022 GGGTACATGGGTATGCGGGT 61.702 60.000 0.00 0.00 37.85 5.28
371 372 1.050204 GGTACATGGGTATGCGGGTA 58.950 55.000 0.00 0.00 37.85 3.69
372 373 1.626825 GGTACATGGGTATGCGGGTAT 59.373 52.381 0.00 0.00 37.85 2.73
373 374 2.614481 GGTACATGGGTATGCGGGTATG 60.614 54.545 0.00 0.00 37.85 2.39
374 375 0.400213 ACATGGGTATGCGGGTATGG 59.600 55.000 0.00 0.00 37.85 2.74
375 376 0.322456 CATGGGTATGCGGGTATGGG 60.322 60.000 0.00 0.00 0.00 4.00
376 377 0.770557 ATGGGTATGCGGGTATGGGT 60.771 55.000 0.00 0.00 0.00 4.51
377 378 0.989212 TGGGTATGCGGGTATGGGTT 60.989 55.000 0.00 0.00 0.00 4.11
378 379 1.058284 GGGTATGCGGGTATGGGTTA 58.942 55.000 0.00 0.00 0.00 2.85
379 380 1.631898 GGGTATGCGGGTATGGGTTAT 59.368 52.381 0.00 0.00 0.00 1.89
380 381 2.617021 GGGTATGCGGGTATGGGTTATG 60.617 54.545 0.00 0.00 0.00 1.90
381 382 2.039348 GGTATGCGGGTATGGGTTATGT 59.961 50.000 0.00 0.00 0.00 2.29
382 383 2.270352 ATGCGGGTATGGGTTATGTG 57.730 50.000 0.00 0.00 0.00 3.21
383 384 1.205055 TGCGGGTATGGGTTATGTGA 58.795 50.000 0.00 0.00 0.00 3.58
384 385 1.771854 TGCGGGTATGGGTTATGTGAT 59.228 47.619 0.00 0.00 0.00 3.06
385 386 2.224426 TGCGGGTATGGGTTATGTGATC 60.224 50.000 0.00 0.00 0.00 2.92
386 387 2.038557 GCGGGTATGGGTTATGTGATCT 59.961 50.000 0.00 0.00 0.00 2.75
387 388 3.864921 GCGGGTATGGGTTATGTGATCTC 60.865 52.174 0.00 0.00 0.00 2.75
388 389 3.323691 CGGGTATGGGTTATGTGATCTCA 59.676 47.826 0.00 0.00 0.00 3.27
389 390 4.020218 CGGGTATGGGTTATGTGATCTCAT 60.020 45.833 14.29 14.29 0.00 2.90
390 391 5.186992 CGGGTATGGGTTATGTGATCTCATA 59.813 44.000 12.37 12.37 0.00 2.15
391 392 6.407202 GGGTATGGGTTATGTGATCTCATAC 58.593 44.000 15.33 11.07 36.47 2.39
392 393 6.407202 GGTATGGGTTATGTGATCTCATACC 58.593 44.000 15.33 17.17 44.28 2.73
393 394 4.974645 TGGGTTATGTGATCTCATACCC 57.025 45.455 27.51 27.51 39.37 3.69
394 395 4.302930 TGGGTTATGTGATCTCATACCCA 58.697 43.478 30.01 30.01 42.30 4.51
395 396 4.913355 TGGGTTATGTGATCTCATACCCAT 59.087 41.667 30.01 10.74 41.22 4.00
396 397 6.088137 TGGGTTATGTGATCTCATACCCATA 58.912 40.000 30.01 19.13 41.22 2.74
397 398 6.013725 TGGGTTATGTGATCTCATACCCATAC 60.014 42.308 30.01 20.45 41.22 2.39
398 399 6.407202 GGTTATGTGATCTCATACCCATACC 58.593 44.000 20.44 17.57 34.44 2.73
399 400 6.407202 GTTATGTGATCTCATACCCATACCC 58.593 44.000 15.33 0.00 31.19 3.69
400 401 2.897326 TGTGATCTCATACCCATACCCG 59.103 50.000 0.00 0.00 0.00 5.28
401 402 1.899814 TGATCTCATACCCATACCCGC 59.100 52.381 0.00 0.00 0.00 6.13
402 403 2.180276 GATCTCATACCCATACCCGCT 58.820 52.381 0.00 0.00 0.00 5.52
403 404 1.629043 TCTCATACCCATACCCGCTC 58.371 55.000 0.00 0.00 0.00 5.03
404 405 1.147191 TCTCATACCCATACCCGCTCT 59.853 52.381 0.00 0.00 0.00 4.09
405 406 2.377531 TCTCATACCCATACCCGCTCTA 59.622 50.000 0.00 0.00 0.00 2.43
406 407 3.011369 TCTCATACCCATACCCGCTCTAT 59.989 47.826 0.00 0.00 0.00 1.98
407 408 3.362706 TCATACCCATACCCGCTCTATC 58.637 50.000 0.00 0.00 0.00 2.08
408 409 2.226962 TACCCATACCCGCTCTATCC 57.773 55.000 0.00 0.00 0.00 2.59
409 410 0.487772 ACCCATACCCGCTCTATCCT 59.512 55.000 0.00 0.00 0.00 3.24
410 411 1.714787 ACCCATACCCGCTCTATCCTA 59.285 52.381 0.00 0.00 0.00 2.94
411 412 2.315155 ACCCATACCCGCTCTATCCTAT 59.685 50.000 0.00 0.00 0.00 2.57
412 413 2.695666 CCCATACCCGCTCTATCCTATG 59.304 54.545 0.00 0.00 0.00 2.23
413 414 2.695666 CCATACCCGCTCTATCCTATGG 59.304 54.545 0.00 0.00 0.00 2.74
414 415 2.526888 TACCCGCTCTATCCTATGGG 57.473 55.000 0.00 0.00 42.50 4.00
415 416 0.487772 ACCCGCTCTATCCTATGGGT 59.512 55.000 0.00 0.00 44.89 4.51
416 417 1.645710 CCCGCTCTATCCTATGGGTT 58.354 55.000 0.00 0.00 31.82 4.11
417 418 1.978580 CCCGCTCTATCCTATGGGTTT 59.021 52.381 0.00 0.00 31.82 3.27
418 419 2.289694 CCCGCTCTATCCTATGGGTTTG 60.290 54.545 0.00 0.00 31.82 2.93
419 420 2.632996 CCGCTCTATCCTATGGGTTTGA 59.367 50.000 0.00 0.00 0.00 2.69
420 421 3.306364 CCGCTCTATCCTATGGGTTTGAG 60.306 52.174 11.56 11.56 37.29 3.02
421 422 3.574396 CGCTCTATCCTATGGGTTTGAGA 59.426 47.826 17.64 6.40 36.77 3.27
422 423 4.221703 CGCTCTATCCTATGGGTTTGAGAT 59.778 45.833 17.64 0.00 36.77 2.75
423 424 5.279708 CGCTCTATCCTATGGGTTTGAGATT 60.280 44.000 17.64 0.00 36.77 2.40
424 425 6.538263 GCTCTATCCTATGGGTTTGAGATTT 58.462 40.000 17.64 0.00 36.77 2.17
425 426 6.429385 GCTCTATCCTATGGGTTTGAGATTTG 59.571 42.308 17.64 0.00 36.77 2.32
426 427 6.299141 TCTATCCTATGGGTTTGAGATTTGC 58.701 40.000 0.00 0.00 0.00 3.68
427 428 3.631250 TCCTATGGGTTTGAGATTTGCC 58.369 45.455 0.00 0.00 0.00 4.52
428 429 3.269381 TCCTATGGGTTTGAGATTTGCCT 59.731 43.478 0.00 0.00 0.00 4.75
429 430 4.476846 TCCTATGGGTTTGAGATTTGCCTA 59.523 41.667 0.00 0.00 0.00 3.93
430 431 5.134339 TCCTATGGGTTTGAGATTTGCCTAT 59.866 40.000 0.00 0.00 0.00 2.57
431 432 5.835280 CCTATGGGTTTGAGATTTGCCTATT 59.165 40.000 0.00 0.00 0.00 1.73
432 433 6.324770 CCTATGGGTTTGAGATTTGCCTATTT 59.675 38.462 0.00 0.00 0.00 1.40
433 434 7.505585 CCTATGGGTTTGAGATTTGCCTATTTA 59.494 37.037 0.00 0.00 0.00 1.40
434 435 7.919385 ATGGGTTTGAGATTTGCCTATTTAT 57.081 32.000 0.00 0.00 0.00 1.40
436 437 9.605951 ATGGGTTTGAGATTTGCCTATTTATAT 57.394 29.630 0.00 0.00 0.00 0.86
443 444 9.685276 TGAGATTTGCCTATTTATATACCCATG 57.315 33.333 0.00 0.00 0.00 3.66
444 445 9.125026 GAGATTTGCCTATTTATATACCCATGG 57.875 37.037 4.14 4.14 0.00 3.66
445 446 8.061304 AGATTTGCCTATTTATATACCCATGGG 58.939 37.037 30.23 30.23 42.03 4.00
463 464 8.110860 CCCATGGGTAACATTTTATCTCATAC 57.889 38.462 23.93 0.00 37.84 2.39
464 465 7.176690 CCCATGGGTAACATTTTATCTCATACC 59.823 40.741 23.93 0.00 37.84 2.73
469 470 9.281371 GGGTAACATTTTATCTCATACCCTTAC 57.719 37.037 10.17 0.00 44.87 2.34
470 471 9.281371 GGTAACATTTTATCTCATACCCTTACC 57.719 37.037 0.00 0.00 0.00 2.85
471 472 9.281371 GTAACATTTTATCTCATACCCTTACCC 57.719 37.037 0.00 0.00 0.00 3.69
472 473 7.707467 ACATTTTATCTCATACCCTTACCCT 57.293 36.000 0.00 0.00 0.00 4.34
473 474 8.808240 ACATTTTATCTCATACCCTTACCCTA 57.192 34.615 0.00 0.00 0.00 3.53
474 475 9.232882 ACATTTTATCTCATACCCTTACCCTAA 57.767 33.333 0.00 0.00 0.00 2.69
478 479 9.556772 TTTATCTCATACCCTTACCCTAATAGG 57.443 37.037 0.00 0.00 34.30 2.57
495 496 3.334413 GGGTTTTTACCCGCAGAGT 57.666 52.632 0.00 0.00 40.59 3.24
496 497 2.477845 GGGTTTTTACCCGCAGAGTA 57.522 50.000 0.00 0.00 40.59 2.59
497 498 2.079158 GGGTTTTTACCCGCAGAGTAC 58.921 52.381 0.00 0.00 40.59 2.73
498 499 2.550639 GGGTTTTTACCCGCAGAGTACA 60.551 50.000 0.00 0.00 40.59 2.90
499 500 3.340928 GGTTTTTACCCGCAGAGTACAT 58.659 45.455 0.00 0.00 0.00 2.29
500 501 3.126343 GGTTTTTACCCGCAGAGTACATG 59.874 47.826 0.00 0.00 0.00 3.21
501 502 2.684001 TTTACCCGCAGAGTACATGG 57.316 50.000 0.00 0.00 0.00 3.66
502 503 0.828022 TTACCCGCAGAGTACATGGG 59.172 55.000 0.00 1.84 45.70 4.00
503 504 3.309582 CCCGCAGAGTACATGGGT 58.690 61.111 12.21 0.00 35.05 4.51
504 505 2.511818 CCCGCAGAGTACATGGGTA 58.488 57.895 12.21 0.00 35.05 3.69
505 506 0.828022 CCCGCAGAGTACATGGGTAA 59.172 55.000 12.21 0.00 35.05 2.85
506 507 1.416401 CCCGCAGAGTACATGGGTAAT 59.584 52.381 12.21 0.00 35.05 1.89
507 508 2.483876 CCGCAGAGTACATGGGTAATG 58.516 52.381 12.21 0.00 42.48 1.90
508 509 2.102420 CCGCAGAGTACATGGGTAATGA 59.898 50.000 12.21 0.00 38.72 2.57
509 510 3.384668 CGCAGAGTACATGGGTAATGAG 58.615 50.000 0.00 0.00 38.72 2.90
510 511 3.181475 CGCAGAGTACATGGGTAATGAGT 60.181 47.826 0.00 0.00 38.72 3.41
511 512 4.037565 CGCAGAGTACATGGGTAATGAGTA 59.962 45.833 0.00 0.00 38.72 2.59
512 513 5.290386 GCAGAGTACATGGGTAATGAGTAC 58.710 45.833 0.00 0.00 38.72 2.73
524 525 2.664402 ATGAGTACCCATTGCCATCC 57.336 50.000 0.00 0.00 0.00 3.51
525 526 0.550914 TGAGTACCCATTGCCATCCC 59.449 55.000 0.00 0.00 0.00 3.85
526 527 0.846693 GAGTACCCATTGCCATCCCT 59.153 55.000 0.00 0.00 0.00 4.20
527 528 0.846693 AGTACCCATTGCCATCCCTC 59.153 55.000 0.00 0.00 0.00 4.30
528 529 0.846693 GTACCCATTGCCATCCCTCT 59.153 55.000 0.00 0.00 0.00 3.69
529 530 1.215423 GTACCCATTGCCATCCCTCTT 59.785 52.381 0.00 0.00 0.00 2.85
530 531 0.259938 ACCCATTGCCATCCCTCTTC 59.740 55.000 0.00 0.00 0.00 2.87
531 532 0.259647 CCCATTGCCATCCCTCTTCA 59.740 55.000 0.00 0.00 0.00 3.02
532 533 1.396653 CCATTGCCATCCCTCTTCAC 58.603 55.000 0.00 0.00 0.00 3.18
533 534 1.396653 CATTGCCATCCCTCTTCACC 58.603 55.000 0.00 0.00 0.00 4.02
534 535 0.259938 ATTGCCATCCCTCTTCACCC 59.740 55.000 0.00 0.00 0.00 4.61
535 536 0.846427 TTGCCATCCCTCTTCACCCT 60.846 55.000 0.00 0.00 0.00 4.34
536 537 1.274703 TGCCATCCCTCTTCACCCTC 61.275 60.000 0.00 0.00 0.00 4.30
537 538 1.826024 CCATCCCTCTTCACCCTCG 59.174 63.158 0.00 0.00 0.00 4.63
538 539 1.690219 CCATCCCTCTTCACCCTCGG 61.690 65.000 0.00 0.00 0.00 4.63
539 540 2.066999 ATCCCTCTTCACCCTCGGC 61.067 63.158 0.00 0.00 0.00 5.54
540 541 4.148825 CCCTCTTCACCCTCGGCG 62.149 72.222 0.00 0.00 0.00 6.46
541 542 4.148825 CCTCTTCACCCTCGGCGG 62.149 72.222 7.21 0.00 0.00 6.13
542 543 4.821589 CTCTTCACCCTCGGCGGC 62.822 72.222 7.21 0.00 0.00 6.53
544 545 4.697756 CTTCACCCTCGGCGGCAA 62.698 66.667 10.53 0.00 0.00 4.52
545 546 3.976701 CTTCACCCTCGGCGGCAAT 62.977 63.158 10.53 0.00 0.00 3.56
546 547 3.561120 TTCACCCTCGGCGGCAATT 62.561 57.895 10.53 0.00 0.00 2.32
547 548 3.814268 CACCCTCGGCGGCAATTG 61.814 66.667 10.53 0.00 0.00 2.32
548 549 4.344865 ACCCTCGGCGGCAATTGT 62.345 61.111 10.53 0.00 0.00 2.71
549 550 2.124901 CCCTCGGCGGCAATTGTA 60.125 61.111 10.53 0.00 0.00 2.41
550 551 2.180204 CCCTCGGCGGCAATTGTAG 61.180 63.158 10.53 2.69 0.00 2.74
551 552 2.180204 CCTCGGCGGCAATTGTAGG 61.180 63.158 10.53 0.00 0.00 3.18
552 553 1.449601 CTCGGCGGCAATTGTAGGT 60.450 57.895 10.53 0.00 0.00 3.08
553 554 1.705337 CTCGGCGGCAATTGTAGGTG 61.705 60.000 10.53 0.00 0.00 4.00
554 555 1.743623 CGGCGGCAATTGTAGGTGA 60.744 57.895 10.53 0.00 0.00 4.02
555 556 1.800681 GGCGGCAATTGTAGGTGAC 59.199 57.895 3.07 0.00 0.00 3.67
556 557 0.958382 GGCGGCAATTGTAGGTGACA 60.958 55.000 3.07 0.00 35.78 3.58
557 558 0.447801 GCGGCAATTGTAGGTGACAG 59.552 55.000 7.40 0.00 39.88 3.51
558 559 1.086696 CGGCAATTGTAGGTGACAGG 58.913 55.000 7.40 0.00 39.88 4.00
793 797 1.770294 TCCAAGGAAAACACCACCAC 58.230 50.000 0.00 0.00 0.00 4.16
794 798 1.006043 TCCAAGGAAAACACCACCACA 59.994 47.619 0.00 0.00 0.00 4.17
795 799 1.408702 CCAAGGAAAACACCACCACAG 59.591 52.381 0.00 0.00 0.00 3.66
796 800 2.099405 CAAGGAAAACACCACCACAGT 58.901 47.619 0.00 0.00 0.00 3.55
797 801 2.052782 AGGAAAACACCACCACAGTC 57.947 50.000 0.00 0.00 0.00 3.51
798 802 1.029681 GGAAAACACCACCACAGTCC 58.970 55.000 0.00 0.00 0.00 3.85
799 803 1.683629 GGAAAACACCACCACAGTCCA 60.684 52.381 0.00 0.00 0.00 4.02
823 827 0.590195 GCGAATGCATGATCCTGACC 59.410 55.000 0.00 0.00 42.15 4.02
857 861 5.125097 GGAAAATCACATGCTGTCTCTTCAT 59.875 40.000 0.00 0.00 0.00 2.57
919 923 1.065491 ACAAATACGCCTCTCCATGCA 60.065 47.619 0.00 0.00 0.00 3.96
1275 1281 4.250305 AAGGCCAACGTGCTCGGT 62.250 61.111 13.32 2.22 41.85 4.69
1602 3698 0.095935 TACTTGTACGAGACTCGCGC 59.904 55.000 24.38 16.91 45.12 6.86
1645 3741 7.819415 AGAAAAGATGACGACATGATAGTCAAA 59.181 33.333 19.93 5.20 44.84 2.69
1833 3929 7.201401 CGTATCTATCTCTGACTAGATGACACG 60.201 44.444 0.00 10.76 36.85 4.49
1838 3934 1.138883 GACTAGATGACACGCCGCA 59.861 57.895 0.00 0.00 0.00 5.69
1864 3960 2.610232 GCTGCGGGAATTTTGAACACAT 60.610 45.455 0.00 0.00 0.00 3.21
1908 4011 7.448161 TGATACAACCATGATTCTCAACTGTTT 59.552 33.333 0.00 0.00 0.00 2.83
2172 4340 8.451908 ACATGACCTTATAAATAAGCCAAGTC 57.548 34.615 0.00 6.93 38.69 3.01
2346 4826 2.419990 GCAAAAGAAATACCCATGGCCC 60.420 50.000 6.09 0.00 0.00 5.80
2357 4837 1.549950 CCCATGGCCCACAGTTTAGTT 60.550 52.381 6.09 0.00 0.00 2.24
2358 4838 2.247358 CCATGGCCCACAGTTTAGTTT 58.753 47.619 0.00 0.00 0.00 2.66
2359 4839 2.632512 CCATGGCCCACAGTTTAGTTTT 59.367 45.455 0.00 0.00 0.00 2.43
2360 4840 3.070878 CCATGGCCCACAGTTTAGTTTTT 59.929 43.478 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 9.515226 AGGATGTGTTGTTGTTTATAAGTATGT 57.485 29.630 0.00 0.00 0.00 2.29
71 72 9.953697 GTTGTTTAGGATGTGTTGTTGTTTATA 57.046 29.630 0.00 0.00 0.00 0.98
72 73 8.470805 TGTTGTTTAGGATGTGTTGTTGTTTAT 58.529 29.630 0.00 0.00 0.00 1.40
73 74 7.827701 TGTTGTTTAGGATGTGTTGTTGTTTA 58.172 30.769 0.00 0.00 0.00 2.01
74 75 6.692486 TGTTGTTTAGGATGTGTTGTTGTTT 58.308 32.000 0.00 0.00 0.00 2.83
75 76 6.274157 TGTTGTTTAGGATGTGTTGTTGTT 57.726 33.333 0.00 0.00 0.00 2.83
76 77 5.906113 TGTTGTTTAGGATGTGTTGTTGT 57.094 34.783 0.00 0.00 0.00 3.32
77 78 6.034470 GTGTTGTTGTTTAGGATGTGTTGTTG 59.966 38.462 0.00 0.00 0.00 3.33
78 79 6.096695 GTGTTGTTGTTTAGGATGTGTTGTT 58.903 36.000 0.00 0.00 0.00 2.83
79 80 5.184096 TGTGTTGTTGTTTAGGATGTGTTGT 59.816 36.000 0.00 0.00 0.00 3.32
80 81 5.645624 TGTGTTGTTGTTTAGGATGTGTTG 58.354 37.500 0.00 0.00 0.00 3.33
81 82 5.906113 TGTGTTGTTGTTTAGGATGTGTT 57.094 34.783 0.00 0.00 0.00 3.32
82 83 6.321181 AGAATGTGTTGTTGTTTAGGATGTGT 59.679 34.615 0.00 0.00 0.00 3.72
83 84 6.738114 AGAATGTGTTGTTGTTTAGGATGTG 58.262 36.000 0.00 0.00 0.00 3.21
84 85 6.959639 AGAATGTGTTGTTGTTTAGGATGT 57.040 33.333 0.00 0.00 0.00 3.06
85 86 8.729756 TCATAGAATGTGTTGTTGTTTAGGATG 58.270 33.333 0.00 0.00 0.00 3.51
86 87 8.862325 TCATAGAATGTGTTGTTGTTTAGGAT 57.138 30.769 0.00 0.00 0.00 3.24
87 88 8.684386 TTCATAGAATGTGTTGTTGTTTAGGA 57.316 30.769 0.00 0.00 0.00 2.94
88 89 9.743057 TTTTCATAGAATGTGTTGTTGTTTAGG 57.257 29.630 0.00 0.00 0.00 2.69
92 93 9.814899 TGATTTTTCATAGAATGTGTTGTTGTT 57.185 25.926 0.00 0.00 0.00 2.83
93 94 9.814899 TTGATTTTTCATAGAATGTGTTGTTGT 57.185 25.926 0.00 0.00 0.00 3.32
95 96 9.814899 TGTTGATTTTTCATAGAATGTGTTGTT 57.185 25.926 0.00 0.00 0.00 2.83
96 97 9.248291 GTGTTGATTTTTCATAGAATGTGTTGT 57.752 29.630 0.00 0.00 0.00 3.32
97 98 8.702438 GGTGTTGATTTTTCATAGAATGTGTTG 58.298 33.333 0.00 0.00 0.00 3.33
98 99 8.641541 AGGTGTTGATTTTTCATAGAATGTGTT 58.358 29.630 0.00 0.00 0.00 3.32
99 100 8.181904 AGGTGTTGATTTTTCATAGAATGTGT 57.818 30.769 0.00 0.00 0.00 3.72
100 101 9.132521 GAAGGTGTTGATTTTTCATAGAATGTG 57.867 33.333 0.00 0.00 0.00 3.21
101 102 9.082313 AGAAGGTGTTGATTTTTCATAGAATGT 57.918 29.630 0.00 0.00 0.00 2.71
102 103 9.918630 AAGAAGGTGTTGATTTTTCATAGAATG 57.081 29.630 0.00 0.00 0.00 2.67
103 104 9.918630 CAAGAAGGTGTTGATTTTTCATAGAAT 57.081 29.630 0.00 0.00 0.00 2.40
104 105 8.912988 ACAAGAAGGTGTTGATTTTTCATAGAA 58.087 29.630 0.00 0.00 0.00 2.10
105 106 8.463930 ACAAGAAGGTGTTGATTTTTCATAGA 57.536 30.769 0.00 0.00 0.00 1.98
108 109 9.313118 GTTTACAAGAAGGTGTTGATTTTTCAT 57.687 29.630 0.00 0.00 32.75 2.57
109 110 8.307483 TGTTTACAAGAAGGTGTTGATTTTTCA 58.693 29.630 0.00 0.00 32.75 2.69
110 111 8.696410 TGTTTACAAGAAGGTGTTGATTTTTC 57.304 30.769 0.00 0.00 32.75 2.29
111 112 9.665719 ATTGTTTACAAGAAGGTGTTGATTTTT 57.334 25.926 1.50 0.00 39.47 1.94
114 115 9.744468 GTTATTGTTTACAAGAAGGTGTTGATT 57.256 29.630 3.14 0.00 37.68 2.57
115 116 8.908903 TGTTATTGTTTACAAGAAGGTGTTGAT 58.091 29.630 3.14 0.00 37.68 2.57
116 117 8.185505 GTGTTATTGTTTACAAGAAGGTGTTGA 58.814 33.333 3.14 0.00 37.68 3.18
117 118 7.971168 TGTGTTATTGTTTACAAGAAGGTGTTG 59.029 33.333 3.14 0.00 37.68 3.33
118 119 8.057536 TGTGTTATTGTTTACAAGAAGGTGTT 57.942 30.769 3.14 0.00 37.68 3.32
119 120 7.633193 TGTGTTATTGTTTACAAGAAGGTGT 57.367 32.000 3.14 0.00 37.68 4.16
120 121 8.349245 TGATGTGTTATTGTTTACAAGAAGGTG 58.651 33.333 3.14 0.00 37.68 4.00
121 122 8.458573 TGATGTGTTATTGTTTACAAGAAGGT 57.541 30.769 3.14 0.00 37.68 3.50
122 123 9.743057 TTTGATGTGTTATTGTTTACAAGAAGG 57.257 29.630 3.14 0.00 37.68 3.46
158 159 9.629878 CGGAGGGAGTACTATTTATGACTATAT 57.370 37.037 0.00 0.00 0.00 0.86
159 160 8.609483 ACGGAGGGAGTACTATTTATGACTATA 58.391 37.037 0.00 0.00 0.00 1.31
160 161 7.468496 ACGGAGGGAGTACTATTTATGACTAT 58.532 38.462 0.00 0.00 0.00 2.12
161 162 6.845908 ACGGAGGGAGTACTATTTATGACTA 58.154 40.000 0.00 0.00 0.00 2.59
162 163 5.703310 ACGGAGGGAGTACTATTTATGACT 58.297 41.667 0.00 0.00 0.00 3.41
163 164 5.048154 GGACGGAGGGAGTACTATTTATGAC 60.048 48.000 0.00 0.00 0.00 3.06
164 165 5.075493 GGACGGAGGGAGTACTATTTATGA 58.925 45.833 0.00 0.00 0.00 2.15
165 166 4.220163 GGGACGGAGGGAGTACTATTTATG 59.780 50.000 0.00 0.00 0.00 1.90
166 167 4.140853 TGGGACGGAGGGAGTACTATTTAT 60.141 45.833 0.00 0.00 0.00 1.40
167 168 3.205056 TGGGACGGAGGGAGTACTATTTA 59.795 47.826 0.00 0.00 0.00 1.40
168 169 2.023695 TGGGACGGAGGGAGTACTATTT 60.024 50.000 0.00 0.00 0.00 1.40
169 170 1.572415 TGGGACGGAGGGAGTACTATT 59.428 52.381 0.00 0.00 0.00 1.73
170 171 1.229131 TGGGACGGAGGGAGTACTAT 58.771 55.000 0.00 0.00 0.00 2.12
171 172 1.002069 TTGGGACGGAGGGAGTACTA 58.998 55.000 0.00 0.00 0.00 1.82
172 173 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
173 174 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
174 175 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
175 176 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
176 177 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
177 178 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
178 179 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
179 180 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
180 181 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
181 182 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
182 183 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
183 184 4.378459 GCTCAAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
184 185 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
185 186 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
186 187 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
187 188 7.440523 ACTAAGCTCAAGACACTTATTTTGG 57.559 36.000 3.19 0.00 0.00 3.28
188 189 8.988934 TGTACTAAGCTCAAGACACTTATTTTG 58.011 33.333 3.19 0.00 0.00 2.44
189 190 9.555727 TTGTACTAAGCTCAAGACACTTATTTT 57.444 29.630 3.19 0.00 0.00 1.82
190 191 9.555727 TTTGTACTAAGCTCAAGACACTTATTT 57.444 29.630 3.19 0.00 0.00 1.40
191 192 9.726438 ATTTGTACTAAGCTCAAGACACTTATT 57.274 29.630 3.19 0.00 0.00 1.40
192 193 9.726438 AATTTGTACTAAGCTCAAGACACTTAT 57.274 29.630 3.19 0.00 0.00 1.73
193 194 9.555727 AAATTTGTACTAAGCTCAAGACACTTA 57.444 29.630 3.19 0.00 0.00 2.24
194 195 8.451908 AAATTTGTACTAAGCTCAAGACACTT 57.548 30.769 3.19 0.00 0.00 3.16
195 196 9.726438 ATAAATTTGTACTAAGCTCAAGACACT 57.274 29.630 0.00 0.00 0.00 3.55
221 222 9.239551 TGTCTCAACTTTGTACTAGCTCTAATA 57.760 33.333 0.00 0.00 0.00 0.98
222 223 8.030106 GTGTCTCAACTTTGTACTAGCTCTAAT 58.970 37.037 0.00 0.00 0.00 1.73
223 224 7.230913 AGTGTCTCAACTTTGTACTAGCTCTAA 59.769 37.037 0.00 0.00 0.00 2.10
224 225 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
225 226 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
226 227 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
227 228 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
228 229 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
231 232 9.391006 TCAAAATAAGTGTCTCAACTTTGTACT 57.609 29.630 0.00 0.00 40.77 2.73
232 233 9.651718 CTCAAAATAAGTGTCTCAACTTTGTAC 57.348 33.333 0.00 0.00 40.77 2.90
233 234 9.607988 TCTCAAAATAAGTGTCTCAACTTTGTA 57.392 29.630 0.00 0.00 40.77 2.41
234 235 8.398665 GTCTCAAAATAAGTGTCTCAACTTTGT 58.601 33.333 0.00 0.00 40.77 2.83
235 236 7.584123 CGTCTCAAAATAAGTGTCTCAACTTTG 59.416 37.037 0.00 0.00 40.77 2.77
236 237 7.494625 TCGTCTCAAAATAAGTGTCTCAACTTT 59.505 33.333 0.00 0.00 40.77 2.66
237 238 6.984474 TCGTCTCAAAATAAGTGTCTCAACTT 59.016 34.615 0.00 0.00 42.89 2.66
238 239 6.513180 TCGTCTCAAAATAAGTGTCTCAACT 58.487 36.000 0.00 0.00 0.00 3.16
239 240 6.764877 TCGTCTCAAAATAAGTGTCTCAAC 57.235 37.500 0.00 0.00 0.00 3.18
240 241 6.423905 CCTTCGTCTCAAAATAAGTGTCTCAA 59.576 38.462 0.00 0.00 0.00 3.02
241 242 5.926542 CCTTCGTCTCAAAATAAGTGTCTCA 59.073 40.000 0.00 0.00 0.00 3.27
242 243 6.157211 TCCTTCGTCTCAAAATAAGTGTCTC 58.843 40.000 0.00 0.00 0.00 3.36
243 244 6.097915 TCCTTCGTCTCAAAATAAGTGTCT 57.902 37.500 0.00 0.00 0.00 3.41
244 245 6.424207 ACTTCCTTCGTCTCAAAATAAGTGTC 59.576 38.462 0.00 0.00 0.00 3.67
245 246 6.289064 ACTTCCTTCGTCTCAAAATAAGTGT 58.711 36.000 0.00 0.00 0.00 3.55
246 247 6.787085 ACTTCCTTCGTCTCAAAATAAGTG 57.213 37.500 0.00 0.00 0.00 3.16
247 248 6.590677 GCTACTTCCTTCGTCTCAAAATAAGT 59.409 38.462 0.00 0.00 0.00 2.24
248 249 6.590292 TGCTACTTCCTTCGTCTCAAAATAAG 59.410 38.462 0.00 0.00 0.00 1.73
249 250 6.367969 GTGCTACTTCCTTCGTCTCAAAATAA 59.632 38.462 0.00 0.00 0.00 1.40
250 251 5.867716 GTGCTACTTCCTTCGTCTCAAAATA 59.132 40.000 0.00 0.00 0.00 1.40
251 252 4.691216 GTGCTACTTCCTTCGTCTCAAAAT 59.309 41.667 0.00 0.00 0.00 1.82
252 253 4.056050 GTGCTACTTCCTTCGTCTCAAAA 58.944 43.478 0.00 0.00 0.00 2.44
253 254 3.069016 TGTGCTACTTCCTTCGTCTCAAA 59.931 43.478 0.00 0.00 0.00 2.69
254 255 2.626266 TGTGCTACTTCCTTCGTCTCAA 59.374 45.455 0.00 0.00 0.00 3.02
255 256 2.235891 TGTGCTACTTCCTTCGTCTCA 58.764 47.619 0.00 0.00 0.00 3.27
256 257 3.512033 ATGTGCTACTTCCTTCGTCTC 57.488 47.619 0.00 0.00 0.00 3.36
257 258 4.017808 ACTATGTGCTACTTCCTTCGTCT 58.982 43.478 0.00 0.00 0.00 4.18
258 259 4.142447 TGACTATGTGCTACTTCCTTCGTC 60.142 45.833 0.00 0.00 0.00 4.20
259 260 3.762288 TGACTATGTGCTACTTCCTTCGT 59.238 43.478 0.00 0.00 0.00 3.85
260 261 4.371855 TGACTATGTGCTACTTCCTTCG 57.628 45.455 0.00 0.00 0.00 3.79
261 262 6.806751 TGTATGACTATGTGCTACTTCCTTC 58.193 40.000 0.00 0.00 0.00 3.46
262 263 6.791867 TGTATGACTATGTGCTACTTCCTT 57.208 37.500 0.00 0.00 0.00 3.36
263 264 6.985653 ATGTATGACTATGTGCTACTTCCT 57.014 37.500 0.00 0.00 0.00 3.36
264 265 7.710907 TGAAATGTATGACTATGTGCTACTTCC 59.289 37.037 0.00 0.00 0.00 3.46
265 266 8.648557 TGAAATGTATGACTATGTGCTACTTC 57.351 34.615 0.00 0.00 0.00 3.01
266 267 9.448438 TTTGAAATGTATGACTATGTGCTACTT 57.552 29.630 0.00 0.00 0.00 2.24
267 268 9.618890 ATTTGAAATGTATGACTATGTGCTACT 57.381 29.630 0.00 0.00 0.00 2.57
270 271 8.959548 TCAATTTGAAATGTATGACTATGTGCT 58.040 29.630 0.00 0.00 0.00 4.40
271 272 9.013490 GTCAATTTGAAATGTATGACTATGTGC 57.987 33.333 11.85 0.00 35.49 4.57
277 278 9.683069 GAGTTTGTCAATTTGAAATGTATGACT 57.317 29.630 17.24 7.43 38.34 3.41
278 279 9.462174 TGAGTTTGTCAATTTGAAATGTATGAC 57.538 29.630 12.11 12.11 38.08 3.06
282 283 9.462174 GTCATGAGTTTGTCAATTTGAAATGTA 57.538 29.630 0.00 0.00 39.19 2.29
283 284 7.980662 TGTCATGAGTTTGTCAATTTGAAATGT 59.019 29.630 0.00 0.00 39.19 2.71
284 285 8.355272 TGTCATGAGTTTGTCAATTTGAAATG 57.645 30.769 0.00 0.00 39.19 2.32
285 286 8.945481 TTGTCATGAGTTTGTCAATTTGAAAT 57.055 26.923 0.00 0.00 39.19 2.17
286 287 8.768957 TTTGTCATGAGTTTGTCAATTTGAAA 57.231 26.923 0.00 0.00 39.19 2.69
287 288 8.034215 ACTTTGTCATGAGTTTGTCAATTTGAA 58.966 29.630 0.00 0.00 39.19 2.69
288 289 7.488792 CACTTTGTCATGAGTTTGTCAATTTGA 59.511 33.333 0.00 0.00 39.19 2.69
289 290 7.276218 ACACTTTGTCATGAGTTTGTCAATTTG 59.724 33.333 0.00 0.00 39.19 2.32
290 291 7.322664 ACACTTTGTCATGAGTTTGTCAATTT 58.677 30.769 0.00 0.00 39.19 1.82
291 292 6.866480 ACACTTTGTCATGAGTTTGTCAATT 58.134 32.000 0.00 0.00 39.19 2.32
292 293 6.455360 ACACTTTGTCATGAGTTTGTCAAT 57.545 33.333 0.00 0.00 39.19 2.57
293 294 5.895636 ACACTTTGTCATGAGTTTGTCAA 57.104 34.783 0.00 0.00 39.19 3.18
294 295 6.345298 TCTACACTTTGTCATGAGTTTGTCA 58.655 36.000 0.00 0.00 40.38 3.58
295 296 6.073548 CCTCTACACTTTGTCATGAGTTTGTC 60.074 42.308 0.00 0.00 0.00 3.18
296 297 5.760253 CCTCTACACTTTGTCATGAGTTTGT 59.240 40.000 0.00 0.00 0.00 2.83
297 298 5.760253 ACCTCTACACTTTGTCATGAGTTTG 59.240 40.000 0.00 0.00 0.00 2.93
298 299 5.930135 ACCTCTACACTTTGTCATGAGTTT 58.070 37.500 0.00 0.00 0.00 2.66
299 300 5.552870 ACCTCTACACTTTGTCATGAGTT 57.447 39.130 0.00 0.00 0.00 3.01
300 301 6.665992 TTACCTCTACACTTTGTCATGAGT 57.334 37.500 0.00 0.00 0.00 3.41
301 302 8.553459 AAATTACCTCTACACTTTGTCATGAG 57.447 34.615 0.00 0.00 0.00 2.90
304 305 9.614792 GGATAAATTACCTCTACACTTTGTCAT 57.385 33.333 0.00 0.00 0.00 3.06
305 306 8.598916 TGGATAAATTACCTCTACACTTTGTCA 58.401 33.333 0.00 0.00 0.00 3.58
306 307 9.614792 ATGGATAAATTACCTCTACACTTTGTC 57.385 33.333 0.00 0.00 0.00 3.18
335 336 9.635404 CCCATGTACCCTTATAAAATCTAACAA 57.365 33.333 0.00 0.00 0.00 2.83
336 337 8.783903 ACCCATGTACCCTTATAAAATCTAACA 58.216 33.333 0.00 0.00 0.00 2.41
340 341 7.888546 GCATACCCATGTACCCTTATAAAATCT 59.111 37.037 0.00 0.00 34.40 2.40
341 342 7.148306 CGCATACCCATGTACCCTTATAAAATC 60.148 40.741 0.00 0.00 34.40 2.17
342 343 6.657541 CGCATACCCATGTACCCTTATAAAAT 59.342 38.462 0.00 0.00 34.40 1.82
343 344 5.998981 CGCATACCCATGTACCCTTATAAAA 59.001 40.000 0.00 0.00 34.40 1.52
344 345 5.513441 CCGCATACCCATGTACCCTTATAAA 60.513 44.000 0.00 0.00 34.40 1.40
345 346 4.020039 CCGCATACCCATGTACCCTTATAA 60.020 45.833 0.00 0.00 34.40 0.98
346 347 3.516300 CCGCATACCCATGTACCCTTATA 59.484 47.826 0.00 0.00 34.40 0.98
347 348 2.304761 CCGCATACCCATGTACCCTTAT 59.695 50.000 0.00 0.00 34.40 1.73
348 349 1.695242 CCGCATACCCATGTACCCTTA 59.305 52.381 0.00 0.00 34.40 2.69
349 350 0.472471 CCGCATACCCATGTACCCTT 59.528 55.000 0.00 0.00 34.40 3.95
350 351 1.415672 CCCGCATACCCATGTACCCT 61.416 60.000 0.00 0.00 34.40 4.34
351 352 1.072505 CCCGCATACCCATGTACCC 59.927 63.158 0.00 0.00 34.40 3.69
352 353 1.050204 TACCCGCATACCCATGTACC 58.950 55.000 0.00 0.00 34.40 3.34
353 354 2.614481 CCATACCCGCATACCCATGTAC 60.614 54.545 0.00 0.00 34.40 2.90
354 355 1.626321 CCATACCCGCATACCCATGTA 59.374 52.381 0.00 0.00 34.40 2.29
355 356 0.400213 CCATACCCGCATACCCATGT 59.600 55.000 0.00 0.00 34.40 3.21
356 357 0.322456 CCCATACCCGCATACCCATG 60.322 60.000 0.00 0.00 35.07 3.66
357 358 0.770557 ACCCATACCCGCATACCCAT 60.771 55.000 0.00 0.00 0.00 4.00
358 359 0.989212 AACCCATACCCGCATACCCA 60.989 55.000 0.00 0.00 0.00 4.51
359 360 1.058284 TAACCCATACCCGCATACCC 58.942 55.000 0.00 0.00 0.00 3.69
360 361 2.039348 ACATAACCCATACCCGCATACC 59.961 50.000 0.00 0.00 0.00 2.73
361 362 3.071479 CACATAACCCATACCCGCATAC 58.929 50.000 0.00 0.00 0.00 2.39
362 363 2.973406 TCACATAACCCATACCCGCATA 59.027 45.455 0.00 0.00 0.00 3.14
363 364 1.771854 TCACATAACCCATACCCGCAT 59.228 47.619 0.00 0.00 0.00 4.73
364 365 1.205055 TCACATAACCCATACCCGCA 58.795 50.000 0.00 0.00 0.00 5.69
365 366 2.038557 AGATCACATAACCCATACCCGC 59.961 50.000 0.00 0.00 0.00 6.13
366 367 3.323691 TGAGATCACATAACCCATACCCG 59.676 47.826 0.00 0.00 0.00 5.28
367 368 4.974645 TGAGATCACATAACCCATACCC 57.025 45.455 0.00 0.00 0.00 3.69
368 369 6.407202 GGTATGAGATCACATAACCCATACC 58.593 44.000 15.15 9.36 44.04 2.73
375 376 6.407202 GGGTATGGGTATGAGATCACATAAC 58.593 44.000 17.15 17.15 39.05 1.89
376 377 5.186992 CGGGTATGGGTATGAGATCACATAA 59.813 44.000 13.55 0.70 35.05 1.90
377 378 4.709886 CGGGTATGGGTATGAGATCACATA 59.290 45.833 8.58 8.58 0.00 2.29
378 379 3.515502 CGGGTATGGGTATGAGATCACAT 59.484 47.826 10.58 10.58 0.00 3.21
379 380 2.897326 CGGGTATGGGTATGAGATCACA 59.103 50.000 0.00 0.00 0.00 3.58
380 381 2.353803 GCGGGTATGGGTATGAGATCAC 60.354 54.545 0.00 0.00 0.00 3.06
381 382 1.899814 GCGGGTATGGGTATGAGATCA 59.100 52.381 0.00 0.00 0.00 2.92
382 383 2.166664 GAGCGGGTATGGGTATGAGATC 59.833 54.545 0.00 0.00 0.00 2.75
383 384 2.180276 GAGCGGGTATGGGTATGAGAT 58.820 52.381 0.00 0.00 0.00 2.75
384 385 1.147191 AGAGCGGGTATGGGTATGAGA 59.853 52.381 0.00 0.00 0.00 3.27
385 386 1.633774 AGAGCGGGTATGGGTATGAG 58.366 55.000 0.00 0.00 0.00 2.90
386 387 2.984435 TAGAGCGGGTATGGGTATGA 57.016 50.000 0.00 0.00 0.00 2.15
387 388 2.431057 GGATAGAGCGGGTATGGGTATG 59.569 54.545 0.00 0.00 0.00 2.39
388 389 2.315155 AGGATAGAGCGGGTATGGGTAT 59.685 50.000 0.00 0.00 0.00 2.73
389 390 1.714787 AGGATAGAGCGGGTATGGGTA 59.285 52.381 0.00 0.00 0.00 3.69
390 391 0.487772 AGGATAGAGCGGGTATGGGT 59.512 55.000 0.00 0.00 0.00 4.51
391 392 2.526888 TAGGATAGAGCGGGTATGGG 57.473 55.000 0.00 0.00 0.00 4.00
392 393 2.695666 CCATAGGATAGAGCGGGTATGG 59.304 54.545 0.00 0.00 33.02 2.74
393 394 2.695666 CCCATAGGATAGAGCGGGTATG 59.304 54.545 0.00 0.00 33.47 2.39
394 395 2.315155 ACCCATAGGATAGAGCGGGTAT 59.685 50.000 0.00 0.00 45.13 2.73
395 396 1.714787 ACCCATAGGATAGAGCGGGTA 59.285 52.381 0.00 0.00 45.13 3.69
396 397 0.487772 ACCCATAGGATAGAGCGGGT 59.512 55.000 0.00 0.00 42.17 5.28
397 398 1.645710 AACCCATAGGATAGAGCGGG 58.354 55.000 0.00 0.00 39.72 6.13
398 399 2.632996 TCAAACCCATAGGATAGAGCGG 59.367 50.000 0.00 0.00 36.73 5.52
399 400 3.574396 TCTCAAACCCATAGGATAGAGCG 59.426 47.826 0.00 0.00 36.73 5.03
400 401 5.753721 ATCTCAAACCCATAGGATAGAGC 57.246 43.478 0.00 0.00 36.73 4.09
401 402 6.429385 GCAAATCTCAAACCCATAGGATAGAG 59.571 42.308 0.00 0.00 36.73 2.43
402 403 6.299141 GCAAATCTCAAACCCATAGGATAGA 58.701 40.000 0.00 0.00 36.73 1.98
403 404 5.474876 GGCAAATCTCAAACCCATAGGATAG 59.525 44.000 0.00 0.00 36.73 2.08
404 405 5.134339 AGGCAAATCTCAAACCCATAGGATA 59.866 40.000 0.00 0.00 36.73 2.59
405 406 4.078980 AGGCAAATCTCAAACCCATAGGAT 60.079 41.667 0.00 0.00 36.73 3.24
406 407 3.269381 AGGCAAATCTCAAACCCATAGGA 59.731 43.478 0.00 0.00 36.73 2.94
407 408 3.635591 AGGCAAATCTCAAACCCATAGG 58.364 45.455 0.00 0.00 40.04 2.57
408 409 6.966534 AATAGGCAAATCTCAAACCCATAG 57.033 37.500 0.00 0.00 0.00 2.23
410 411 7.919385 ATAAATAGGCAAATCTCAAACCCAT 57.081 32.000 0.00 0.00 0.00 4.00
417 418 9.685276 CATGGGTATATAAATAGGCAAATCTCA 57.315 33.333 0.00 0.00 0.00 3.27
418 419 9.125026 CCATGGGTATATAAATAGGCAAATCTC 57.875 37.037 2.85 0.00 0.00 2.75
419 420 8.061304 CCCATGGGTATATAAATAGGCAAATCT 58.939 37.037 23.93 0.00 0.00 2.40
420 421 8.237811 CCCATGGGTATATAAATAGGCAAATC 57.762 38.462 23.93 0.00 0.00 2.17
438 439 7.176690 GGTATGAGATAAAATGTTACCCATGGG 59.823 40.741 30.23 30.23 42.03 4.00
439 440 7.176690 GGGTATGAGATAAAATGTTACCCATGG 59.823 40.741 4.14 4.14 44.37 3.66
440 441 7.944554 AGGGTATGAGATAAAATGTTACCCATG 59.055 37.037 15.55 0.00 46.38 3.66
441 442 8.057246 AGGGTATGAGATAAAATGTTACCCAT 57.943 34.615 15.55 0.00 46.38 4.00
442 443 7.460214 AGGGTATGAGATAAAATGTTACCCA 57.540 36.000 15.55 0.00 46.38 4.51
443 444 9.281371 GTAAGGGTATGAGATAAAATGTTACCC 57.719 37.037 7.08 7.08 45.00 3.69
444 445 9.281371 GGTAAGGGTATGAGATAAAATGTTACC 57.719 37.037 0.00 0.00 0.00 2.85
445 446 9.281371 GGGTAAGGGTATGAGATAAAATGTTAC 57.719 37.037 0.00 0.00 0.00 2.50
446 447 9.232882 AGGGTAAGGGTATGAGATAAAATGTTA 57.767 33.333 0.00 0.00 0.00 2.41
447 448 8.114301 AGGGTAAGGGTATGAGATAAAATGTT 57.886 34.615 0.00 0.00 0.00 2.71
448 449 7.707467 AGGGTAAGGGTATGAGATAAAATGT 57.293 36.000 0.00 0.00 0.00 2.71
452 453 9.556772 CCTATTAGGGTAAGGGTATGAGATAAA 57.443 37.037 1.37 0.00 0.00 1.40
477 478 2.079158 GTACTCTGCGGGTAAAAACCC 58.921 52.381 3.34 3.34 46.43 4.11
478 479 2.769893 TGTACTCTGCGGGTAAAAACC 58.230 47.619 0.00 0.00 0.00 3.27
479 480 3.126343 CCATGTACTCTGCGGGTAAAAAC 59.874 47.826 0.00 0.00 0.00 2.43
480 481 3.340034 CCATGTACTCTGCGGGTAAAAA 58.660 45.455 0.00 0.00 0.00 1.94
481 482 2.355310 CCCATGTACTCTGCGGGTAAAA 60.355 50.000 0.00 0.00 31.80 1.52
482 483 1.208535 CCCATGTACTCTGCGGGTAAA 59.791 52.381 0.00 0.00 31.80 2.01
483 484 0.828022 CCCATGTACTCTGCGGGTAA 59.172 55.000 0.00 0.00 31.80 2.85
484 485 2.511818 CCCATGTACTCTGCGGGTA 58.488 57.895 0.00 0.00 31.80 3.69
485 486 1.612442 ACCCATGTACTCTGCGGGT 60.612 57.895 0.00 0.00 45.53 5.28
486 487 0.828022 TTACCCATGTACTCTGCGGG 59.172 55.000 0.00 0.00 43.02 6.13
487 488 2.102420 TCATTACCCATGTACTCTGCGG 59.898 50.000 0.00 0.00 34.06 5.69
488 489 3.181475 ACTCATTACCCATGTACTCTGCG 60.181 47.826 0.00 0.00 34.06 5.18
489 490 4.408182 ACTCATTACCCATGTACTCTGC 57.592 45.455 0.00 0.00 34.06 4.26
490 491 5.844004 GGTACTCATTACCCATGTACTCTG 58.156 45.833 0.00 0.00 44.41 3.35
502 503 3.821033 GGATGGCAATGGGTACTCATTAC 59.179 47.826 20.47 14.99 35.78 1.89
503 504 3.181434 GGGATGGCAATGGGTACTCATTA 60.181 47.826 20.47 6.26 35.78 1.90
504 505 2.424812 GGGATGGCAATGGGTACTCATT 60.425 50.000 15.48 15.48 37.81 2.57
505 506 1.145738 GGGATGGCAATGGGTACTCAT 59.854 52.381 1.15 1.15 0.00 2.90
506 507 0.550914 GGGATGGCAATGGGTACTCA 59.449 55.000 0.00 0.00 0.00 3.41
507 508 0.846693 AGGGATGGCAATGGGTACTC 59.153 55.000 0.00 0.00 0.00 2.59
508 509 0.846693 GAGGGATGGCAATGGGTACT 59.153 55.000 0.00 0.00 0.00 2.73
509 510 0.846693 AGAGGGATGGCAATGGGTAC 59.153 55.000 0.00 0.00 0.00 3.34
510 511 1.494721 GAAGAGGGATGGCAATGGGTA 59.505 52.381 0.00 0.00 0.00 3.69
511 512 0.259938 GAAGAGGGATGGCAATGGGT 59.740 55.000 0.00 0.00 0.00 4.51
512 513 0.259647 TGAAGAGGGATGGCAATGGG 59.740 55.000 0.00 0.00 0.00 4.00
513 514 1.396653 GTGAAGAGGGATGGCAATGG 58.603 55.000 0.00 0.00 0.00 3.16
514 515 1.396653 GGTGAAGAGGGATGGCAATG 58.603 55.000 0.00 0.00 0.00 2.82
515 516 0.259938 GGGTGAAGAGGGATGGCAAT 59.740 55.000 0.00 0.00 0.00 3.56
516 517 0.846427 AGGGTGAAGAGGGATGGCAA 60.846 55.000 0.00 0.00 0.00 4.52
517 518 1.229951 AGGGTGAAGAGGGATGGCA 60.230 57.895 0.00 0.00 0.00 4.92
518 519 1.529309 GAGGGTGAAGAGGGATGGC 59.471 63.158 0.00 0.00 0.00 4.40
519 520 1.690219 CCGAGGGTGAAGAGGGATGG 61.690 65.000 0.00 0.00 0.00 3.51
520 521 1.826024 CCGAGGGTGAAGAGGGATG 59.174 63.158 0.00 0.00 0.00 3.51
521 522 2.066999 GCCGAGGGTGAAGAGGGAT 61.067 63.158 0.00 0.00 0.00 3.85
522 523 2.683933 GCCGAGGGTGAAGAGGGA 60.684 66.667 0.00 0.00 0.00 4.20
523 524 4.148825 CGCCGAGGGTGAAGAGGG 62.149 72.222 0.00 0.00 34.74 4.30
524 525 4.148825 CCGCCGAGGGTGAAGAGG 62.149 72.222 0.00 0.00 34.74 3.69
525 526 4.821589 GCCGCCGAGGGTGAAGAG 62.822 72.222 0.00 0.00 41.48 2.85
527 528 3.976701 ATTGCCGCCGAGGGTGAAG 62.977 63.158 0.00 0.00 41.48 3.02
528 529 3.561120 AATTGCCGCCGAGGGTGAA 62.561 57.895 0.00 0.00 41.48 3.18
529 530 4.028490 AATTGCCGCCGAGGGTGA 62.028 61.111 0.00 0.00 41.48 4.02
530 531 3.814268 CAATTGCCGCCGAGGGTG 61.814 66.667 0.00 0.00 41.48 4.61
531 532 2.869503 CTACAATTGCCGCCGAGGGT 62.870 60.000 5.05 0.00 41.48 4.34
532 533 2.124901 TACAATTGCCGCCGAGGG 60.125 61.111 5.05 0.00 41.48 4.30
533 534 2.180204 CCTACAATTGCCGCCGAGG 61.180 63.158 5.05 0.00 44.97 4.63
534 535 1.449601 ACCTACAATTGCCGCCGAG 60.450 57.895 5.05 0.00 0.00 4.63
535 536 1.743623 CACCTACAATTGCCGCCGA 60.744 57.895 5.05 0.00 0.00 5.54
536 537 1.743623 TCACCTACAATTGCCGCCG 60.744 57.895 5.05 0.00 0.00 6.46
537 538 0.958382 TGTCACCTACAATTGCCGCC 60.958 55.000 5.05 0.00 34.29 6.13
538 539 0.447801 CTGTCACCTACAATTGCCGC 59.552 55.000 5.05 0.00 37.74 6.53
539 540 1.086696 CCTGTCACCTACAATTGCCG 58.913 55.000 5.05 0.00 37.74 5.69
540 541 2.200373 ACCTGTCACCTACAATTGCC 57.800 50.000 5.05 0.00 37.74 4.52
541 542 2.228822 CCAACCTGTCACCTACAATTGC 59.771 50.000 5.05 0.00 37.74 3.56
542 543 3.750371 TCCAACCTGTCACCTACAATTG 58.250 45.455 3.24 3.24 37.74 2.32
543 544 4.398319 CTTCCAACCTGTCACCTACAATT 58.602 43.478 0.00 0.00 37.74 2.32
544 545 3.244911 CCTTCCAACCTGTCACCTACAAT 60.245 47.826 0.00 0.00 37.74 2.71
545 546 2.105821 CCTTCCAACCTGTCACCTACAA 59.894 50.000 0.00 0.00 37.74 2.41
546 547 1.697432 CCTTCCAACCTGTCACCTACA 59.303 52.381 0.00 0.00 36.42 2.74
547 548 1.697982 ACCTTCCAACCTGTCACCTAC 59.302 52.381 0.00 0.00 0.00 3.18
548 549 2.112279 ACCTTCCAACCTGTCACCTA 57.888 50.000 0.00 0.00 0.00 3.08
549 550 1.222567 AACCTTCCAACCTGTCACCT 58.777 50.000 0.00 0.00 0.00 4.00
550 551 2.067365 AAACCTTCCAACCTGTCACC 57.933 50.000 0.00 0.00 0.00 4.02
551 552 3.194755 ACAAAAACCTTCCAACCTGTCAC 59.805 43.478 0.00 0.00 0.00 3.67
552 553 3.436243 ACAAAAACCTTCCAACCTGTCA 58.564 40.909 0.00 0.00 0.00 3.58
553 554 4.180817 CAACAAAAACCTTCCAACCTGTC 58.819 43.478 0.00 0.00 0.00 3.51
554 555 3.055458 CCAACAAAAACCTTCCAACCTGT 60.055 43.478 0.00 0.00 0.00 4.00
555 556 3.055458 ACCAACAAAAACCTTCCAACCTG 60.055 43.478 0.00 0.00 0.00 4.00
556 557 3.178046 ACCAACAAAAACCTTCCAACCT 58.822 40.909 0.00 0.00 0.00 3.50
557 558 3.620427 ACCAACAAAAACCTTCCAACC 57.380 42.857 0.00 0.00 0.00 3.77
558 559 5.460748 CGAATACCAACAAAAACCTTCCAAC 59.539 40.000 0.00 0.00 0.00 3.77
793 797 1.154413 GCATTCGCGTTGTGGACTG 60.154 57.895 5.77 0.00 0.00 3.51
794 798 0.955428 ATGCATTCGCGTTGTGGACT 60.955 50.000 5.77 0.00 42.97 3.85
795 799 0.794229 CATGCATTCGCGTTGTGGAC 60.794 55.000 5.77 0.00 42.97 4.02
796 800 0.952984 TCATGCATTCGCGTTGTGGA 60.953 50.000 5.77 5.36 42.97 4.02
797 801 0.099259 ATCATGCATTCGCGTTGTGG 59.901 50.000 5.77 0.25 42.97 4.17
798 802 1.459756 GATCATGCATTCGCGTTGTG 58.540 50.000 5.77 4.84 42.97 3.33
799 803 0.378257 GGATCATGCATTCGCGTTGT 59.622 50.000 5.77 0.00 42.97 3.32
857 861 1.933021 AATGGGAGTCTACACGTCCA 58.067 50.000 0.00 0.00 35.10 4.02
919 923 1.051008 TCTGATGCACCAGTGTGACT 58.949 50.000 8.25 0.00 45.76 3.41
1275 1281 0.252330 TGGGGACGTTGAGGTGGATA 60.252 55.000 0.00 0.00 0.00 2.59
1645 3741 0.883814 CCGCCGTCGACTATCTAGGT 60.884 60.000 14.70 0.00 38.10 3.08
1838 3934 0.318614 CAAAATTCCCGCAGCAACGT 60.319 50.000 0.00 0.00 0.00 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.