AutoCloner

Multiple sequence alignment - TraesCS1D01G212800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G212800	chr1D	100.000	3866	0	0	1	3866	298447837	298443972	0.000000e+00	7140.0
1	TraesCS1D01G212800	chr1D	92.928	608	34	7	3262	3866	299573333	299572732	0.000000e+00	876.0
2	TraesCS1D01G212800	chr1D	92.623	610	41	3	3259	3866	201527337	201527944	0.000000e+00	874.0
3	TraesCS1D01G212800	chr1D	81.395	215	22	6	1116	1325	374448492	374448693	4.000000e-35	159.0
4	TraesCS1D01G212800	chr1B	94.960	2877	63	18	430	3262	401455564	401452726	0.000000e+00	4434.0
5	TraesCS1D01G212800	chr1B	88.101	437	24	8	1	424	401456035	401455614	9.650000e-136	494.0
6	TraesCS1D01G212800	chr1A	94.998	2679	69	22	629	3262	372070202	372067544	0.000000e+00	4145.0
7	TraesCS1D01G212800	chr1A	85.535	636	32	21	1	590	372070825	372070204	9.180000e-171	610.0
8	TraesCS1D01G212800	chr4B	81.881	1159	170	31	1734	2866	654274932	654273788	0.000000e+00	941.0
9	TraesCS1D01G212800	chr4B	78.235	170	13	14	1171	1330	12518230	12518075	1.910000e-13	87.9
10	TraesCS1D01G212800	chr5A	81.121	1160	177	33	1734	2866	691835251	691834107	0.000000e+00	891.0
11	TraesCS1D01G212800	chr3D	92.671	614	40	4	3255	3865	135753648	135754259	0.000000e+00	880.0
12	TraesCS1D01G212800	chr4D	80.759	1159	183	31	1734	2866	507272595	507273739	0.000000e+00	869.0
13	TraesCS1D01G212800	chr6D	92.459	610	41	4	3260	3866	458332860	458332253	0.000000e+00	867.0
14	TraesCS1D01G212800	chr6D	91.980	611	42	5	3260	3866	107938741	107938134	0.000000e+00	850.0
15	TraesCS1D01G212800	chr7D	92.434	608	42	3	3262	3866	618375564	618374958	0.000000e+00	865.0
16	TraesCS1D01G212800	chr2D	92.459	610	38	5	3259	3866	193270078	193270681	0.000000e+00	865.0
17	TraesCS1D01G212800	chr2D	84.016	244	25	9	1045	1278	427587340	427587101	5.030000e-54	222.0
18	TraesCS1D01G212800	chr7B	92.308	611	41	5	3260	3866	150052899	150053507	0.000000e+00	863.0
19	TraesCS1D01G212800	chr5D	92.434	608	39	4	3262	3866	272142721	272143324	0.000000e+00	861.0
20	TraesCS1D01G212800	chr5D	83.803	284	27	11	1049	1327	527892497	527892766	6.410000e-63	252.0
21	TraesCS1D01G212800	chr5D	91.892	74	5	1	1049	1122	527892341	527892413	6.830000e-18	102.0
22	TraesCS1D01G212800	chr3B	95.342	322	15	0	1386	1707	705305896	705305575	2.660000e-141	512.0
23	TraesCS1D01G212800	chr3B	95.342	322	12	1	1386	1707	672703104	672702786	3.450000e-140	508.0
24	TraesCS1D01G212800	chr3B	96.970	198	6	0	2086	2283	672702696	672702499	2.230000e-87	333.0
25	TraesCS1D01G212800	chr3B	95.960	198	8	0	2086	2283	705305485	705305288	4.820000e-84	322.0
26	TraesCS1D01G212800	chr3B	95.789	95	3	1	1877	1970	672702789	672702695	6.690000e-33	152.0
27	TraesCS1D01G212800	chr3B	95.789	95	3	1	1877	1970	705305578	705305484	6.690000e-33	152.0
28	TraesCS1D01G212800	chr6B	95.298	319	15	0	1383	1701	624023810	624024128	1.240000e-139	507.0
29	TraesCS1D01G212800	chr6B	96.020	201	8	0	2083	2283	624024221	624024421	1.040000e-85	327.0
30	TraesCS1D01G212800	chr6B	95.789	95	3	1	1877	1970	624024131	624024225	6.690000e-33	152.0
31	TraesCS1D01G212800	chr4A	82.332	283	24	15	1045	1325	700327674	700327416	5.030000e-54	222.0
32	TraesCS1D01G212800	chr4A	80.071	281	37	6	1049	1324	26637804	26638070	1.420000e-44	191.0
33	TraesCS1D01G212800	chr4A	84.706	85	3	1	1238	1322	26661496	26661570	4.140000e-10	76.8
34	TraesCS1D01G212800	chrUn	80.783	281	35	6	1049	1324	215332759	215332493	6.550000e-48	202.0
35	TraesCS1D01G212800	chrUn	80.783	281	35	6	1049	1324	396718767	396719033	6.550000e-48	202.0
36	TraesCS1D01G212800	chr2A	100.000	31	0	0	1248	1278	8167070	8167040	1.500000e-04	58.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G212800	chr1D	298443972	298447837	3865	True	7140.000000	7140	100.000000	1	3866	1	chr1D.!!$R1	3865
1	TraesCS1D01G212800	chr1D	299572732	299573333	601	True	876.000000	876	92.928000	3262	3866	1	chr1D.!!$R2	604
2	TraesCS1D01G212800	chr1D	201527337	201527944	607	False	874.000000	874	92.623000	3259	3866	1	chr1D.!!$F1	607
3	TraesCS1D01G212800	chr1B	401452726	401456035	3309	True	2464.000000	4434	91.530500	1	3262	2	chr1B.!!$R1	3261
4	TraesCS1D01G212800	chr1A	372067544	372070825	3281	True	2377.500000	4145	90.266500	1	3262	2	chr1A.!!$R1	3261
5	TraesCS1D01G212800	chr4B	654273788	654274932	1144	True	941.000000	941	81.881000	1734	2866	1	chr4B.!!$R2	1132
6	TraesCS1D01G212800	chr5A	691834107	691835251	1144	True	891.000000	891	81.121000	1734	2866	1	chr5A.!!$R1	1132
7	TraesCS1D01G212800	chr3D	135753648	135754259	611	False	880.000000	880	92.671000	3255	3865	1	chr3D.!!$F1	610
8	TraesCS1D01G212800	chr4D	507272595	507273739	1144	False	869.000000	869	80.759000	1734	2866	1	chr4D.!!$F1	1132
9	TraesCS1D01G212800	chr6D	458332253	458332860	607	True	867.000000	867	92.459000	3260	3866	1	chr6D.!!$R2	606
10	TraesCS1D01G212800	chr6D	107938134	107938741	607	True	850.000000	850	91.980000	3260	3866	1	chr6D.!!$R1	606
11	TraesCS1D01G212800	chr7D	618374958	618375564	606	True	865.000000	865	92.434000	3262	3866	1	chr7D.!!$R1	604
12	TraesCS1D01G212800	chr2D	193270078	193270681	603	False	865.000000	865	92.459000	3259	3866	1	chr2D.!!$F1	607
13	TraesCS1D01G212800	chr7B	150052899	150053507	608	False	863.000000	863	92.308000	3260	3866	1	chr7B.!!$F1	606
14	TraesCS1D01G212800	chr5D	272142721	272143324	603	False	861.000000	861	92.434000	3262	3866	1	chr5D.!!$F1	604
15	TraesCS1D01G212800	chr3B	672702499	672703104	605	True	331.000000	508	96.033667	1386	2283	3	chr3B.!!$R1	897
16	TraesCS1D01G212800	chr3B	705305288	705305896	608	True	328.666667	512	95.697000	1386	2283	3	chr3B.!!$R2	897
17	TraesCS1D01G212800	chr6B	624023810	624024421	611	False	328.666667	507	95.702333	1383	2283	3	chr6B.!!$F1	900

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
593	688	0.032217	AGGGAGAGGAGAGGAGCAAG	60.032	60.000	0.00	0.00	0.0	4.01	F
626	737	1.306568	GGAGGGAGAGAAGGCCACT	60.307	63.158	5.01	3.29	0.0	4.00	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2805	2977	1.732917	CCAGTAGAGGCAGAGCGAG	59.267	63.158	0.00	0.00	0.00	5.03	R
2900	3078	2.011540	AAGACCGATCGGCTTCTTTC	57.988	50.000	33.62	21.52	39.32	2.62	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
158	159	5.458779	CGCCCAGCAAAGCTAAAATTAATAC	59.541	40.000	0.00	0.00	36.40	1.89
159	160	6.573434	GCCCAGCAAAGCTAAAATTAATACT	58.427	36.000	0.00	0.00	36.40	2.12
160	161	6.697455	GCCCAGCAAAGCTAAAATTAATACTC	59.303	38.462	0.00	0.00	36.40	2.59
161	162	7.203218	CCCAGCAAAGCTAAAATTAATACTCC	58.797	38.462	0.00	0.00	36.40	3.85
162	163	7.068716	CCCAGCAAAGCTAAAATTAATACTCCT	59.931	37.037	0.00	0.00	36.40	3.69
163	164	9.120538	CCAGCAAAGCTAAAATTAATACTCCTA	57.879	33.333	0.00	0.00	36.40	2.94
292	306	5.048713	ACAACAGTTGTAAAGATTGGCTAGC	60.049	40.000	17.74	6.04	43.27	3.42
293	307	4.651778	ACAGTTGTAAAGATTGGCTAGCA	58.348	39.130	18.24	0.00	0.00	3.49
305	322	0.830023	GGCTAGCAGGTAGAGGAGGG	60.830	65.000	18.24	0.00	0.00	4.30
369	400	3.190849	CACATGCAGACGAGGCGG	61.191	66.667	0.00	0.00	0.00	6.13
424	464	3.252215	TCCTGCAAACAGTTTTATGTCCG	59.748	43.478	0.00	0.00	42.81	4.79
426	466	1.976045	GCAAACAGTTTTATGTCCGCG	59.024	47.619	0.00	0.00	31.50	6.46
455	539	1.999648	TCAGGAATTTTGCACAGCCT	58.000	45.000	0.00	0.00	0.00	4.58
495	590	2.892334	CTGTTGCCACCGAACCGTG	61.892	63.158	0.00	0.00	0.00	4.94
496	591	2.589442	GTTGCCACCGAACCGTGA	60.589	61.111	0.00	0.00	35.68	4.35
498	593	4.980805	TGCCACCGAACCGTGAGC	62.981	66.667	0.00	0.00	35.68	4.26
499	594	4.681978	GCCACCGAACCGTGAGCT	62.682	66.667	0.00	0.00	35.68	4.09
500	595	2.967397	CCACCGAACCGTGAGCTA	59.033	61.111	0.00	0.00	35.68	3.32
501	596	1.445582	CCACCGAACCGTGAGCTAC	60.446	63.158	0.00	0.00	35.68	3.58
502	597	1.287815	CACCGAACCGTGAGCTACA	59.712	57.895	0.00	0.00	35.68	2.74
503	598	0.732880	CACCGAACCGTGAGCTACAG	60.733	60.000	0.00	0.00	35.68	2.74
504	599	1.177256	ACCGAACCGTGAGCTACAGT	61.177	55.000	0.00	0.00	0.00	3.55
505	600	0.732880	CCGAACCGTGAGCTACAGTG	60.733	60.000	0.00	0.00	0.00	3.66
506	601	0.732880	CGAACCGTGAGCTACAGTGG	60.733	60.000	0.00	0.00	0.00	4.00
507	602	0.389948	GAACCGTGAGCTACAGTGGG	60.390	60.000	0.00	0.00	31.74	4.61
508	603	1.827399	AACCGTGAGCTACAGTGGGG	61.827	60.000	0.00	0.00	31.74	4.96
536	631	0.110010	GCAGCGAAAGAGAAAGTGGC	60.110	55.000	0.00	0.00	0.00	5.01
538	633	0.951040	AGCGAAAGAGAAAGTGGCCG	60.951	55.000	0.00	0.00	0.00	6.13
544	639	1.859302	AGAGAAAGTGGCCGAGAGAT	58.141	50.000	0.00	0.00	0.00	2.75
550	645	0.257328	AGTGGCCGAGAGATGAGAGA	59.743	55.000	0.00	0.00	0.00	3.10
587	682	1.423921	GTAGGAGAGGGAGAGGAGAGG	59.576	61.905	0.00	0.00	0.00	3.69
590	685	0.178990	GAGAGGGAGAGGAGAGGAGC	60.179	65.000	0.00	0.00	0.00	4.70
591	686	0.923729	AGAGGGAGAGGAGAGGAGCA	60.924	60.000	0.00	0.00	0.00	4.26
592	687	0.032615	GAGGGAGAGGAGAGGAGCAA	60.033	60.000	0.00	0.00	0.00	3.91
593	688	0.032217	AGGGAGAGGAGAGGAGCAAG	60.032	60.000	0.00	0.00	0.00	4.01
624	735	2.041265	GGGAGGGAGAGAAGGCCA	59.959	66.667	5.01	0.00	0.00	5.36
625	736	2.371259	GGGAGGGAGAGAAGGCCAC	61.371	68.421	5.01	0.00	0.00	5.01
626	737	1.306568	GGAGGGAGAGAAGGCCACT	60.307	63.158	5.01	3.29	0.00	4.00
627	738	1.334384	GGAGGGAGAGAAGGCCACTC	61.334	65.000	18.32	18.32	34.95	3.51
2313	2482	1.865340	GTGTTCTTCCAGTTCACCGTC	59.135	52.381	0.00	0.00	0.00	4.79
2358	2527	2.045926	GACCTGGTGGCAATCGCT	60.046	61.111	2.82	0.00	38.60	4.93
2879	3051	2.663196	CTGACAACCCCGACCTCC	59.337	66.667	0.00	0.00	0.00	4.30
2948	3126	9.710818	TTAGGACTAATGATCCTACTACAAAGT	57.289	33.333	0.13	0.00	46.40	2.66
2950	3128	9.134055	AGGACTAATGATCCTACTACAAAGTAC	57.866	37.037	0.00	0.00	45.18	2.73
3125	3311	3.952675	GCAGGGCGTGTGTGTGTG	61.953	66.667	9.16	0.00	0.00	3.82
3219	3412	0.253327	ATGTTTCTTCTCCCGCTCCC	59.747	55.000	0.00	0.00	0.00	4.30
3220	3413	0.836400	TGTTTCTTCTCCCGCTCCCT	60.836	55.000	0.00	0.00	0.00	4.20
3221	3414	0.108089	GTTTCTTCTCCCGCTCCCTC	60.108	60.000	0.00	0.00	0.00	4.30
3222	3415	1.265454	TTTCTTCTCCCGCTCCCTCC	61.265	60.000	0.00	0.00	0.00	4.30
3223	3416	2.042435	CTTCTCCCGCTCCCTCCT	60.042	66.667	0.00	0.00	0.00	3.69
3224	3417	2.042843	TTCTCCCGCTCCCTCCTC	60.043	66.667	0.00	0.00	0.00	3.71
3225	3418	3.680920	TTCTCCCGCTCCCTCCTCC	62.681	68.421	0.00	0.00	0.00	4.30
3251	3444	2.296471	GTCCTTGACCGTTCTCTTCTCA	59.704	50.000	0.00	0.00	0.00	3.27
3257	3450	1.074752	CCGTTCTCTTCTCAGCTTGC	58.925	55.000	0.00	0.00	0.00	4.01
3282	3475	2.332654	GCAACTTCAACGGGCCGAT	61.333	57.895	35.78	20.37	0.00	4.18
3304	3500	0.938713	AAACACGGCGATTTCGTTCA	59.061	45.000	16.62	0.00	42.22	3.18
3388	3584	3.118454	CGTCCAACGCGCCAATCT	61.118	61.111	5.73	0.00	33.65	2.40
3393	3589	3.581755	GTCCAACGCGCCAATCTATATA	58.418	45.455	5.73	0.00	0.00	0.86
3439	3636	6.403418	CGGCCAATTTTACATGATTTGCATTT	60.403	34.615	2.24	0.00	34.15	2.32
3472	3673	9.766277	TTGTCAAATGAAAATGTTTTAACAAGC	57.234	25.926	0.00	0.00	43.03	4.01
3531	3732	9.483916	AGTTTTACAAGCCAAATACCAATAAAC	57.516	29.630	0.00	0.00	0.00	2.01
3627	3829	5.426504	TCAACCAAATCATTTTGCAGTTGT	58.573	33.333	14.48	0.00	41.17	3.32
3674	3876	8.853077	ATGTCTTCATGAAATTGAGTGAACTA	57.147	30.769	9.88	0.00	32.51	2.24
3695	3897	2.076100	CTCAAATGTTGCCGCTACTCA	58.924	47.619	6.52	0.00	0.00	3.41
3758	3960	2.652530	GTACAGACGTTCCGGGCA	59.347	61.111	0.00	0.00	0.00	5.36
3853	4056	2.814280	ATTAGCAGGATACCGAACGG	57.186	50.000	11.83	11.83	42.03	4.44

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
10	11	1.909700	TGCTCATTCCTTTGGTCACC	58.090	50.000	0.00	0.00	0.00	4.02
158	159	3.330267	GAACTGCTTGTTCCACTAGGAG	58.670	50.000	10.63	5.55	46.74	3.69
159	160	3.402628	GAACTGCTTGTTCCACTAGGA	57.597	47.619	10.63	0.00	46.89	2.94
292	306	0.854218	TAGCCTCCCTCCTCTACCTG	59.146	60.000	0.00	0.00	0.00	4.00
293	307	1.154430	CTAGCCTCCCTCCTCTACCT	58.846	60.000	0.00	0.00	0.00	3.08
331	349	0.680921	GCTAGTTTCCATGCCCTGCA	60.681	55.000	0.00	0.00	44.86	4.41
376	407	1.433534	GAGCAGTACAGTTGTGGCTC	58.566	55.000	14.88	14.88	39.19	4.70
377	408	0.035458	GGAGCAGTACAGTTGTGGCT	59.965	55.000	0.00	7.36	35.19	4.75
378	409	0.035458	AGGAGCAGTACAGTTGTGGC	59.965	55.000	0.00	0.00	0.00	5.01
379	410	2.417719	GAAGGAGCAGTACAGTTGTGG	58.582	52.381	0.00	0.00	0.00	4.17
424	464	1.531423	ATTCCTGATGATGCATCCGC	58.469	50.000	23.67	15.40	39.87	5.54
426	466	4.056050	GCAAAATTCCTGATGATGCATCC	58.944	43.478	23.67	9.97	39.87	3.51
455	539	9.454859	AACAGAAAGAGAAGAGAGAAAGAAAAA	57.545	29.630	0.00	0.00	0.00	1.94
495	590	1.222113	GGCTTCCCCACTGTAGCTC	59.778	63.158	0.00	0.00	34.16	4.09
496	591	1.538876	TGGCTTCCCCACTGTAGCT	60.539	57.895	0.00	0.00	39.18	3.32
505	600	3.830192	CGCTGCAATGGCTTCCCC	61.830	66.667	0.00	0.00	41.91	4.81
506	601	1.876497	TTTCGCTGCAATGGCTTCCC	61.876	55.000	0.00	0.00	41.91	3.97
507	602	0.457337	CTTTCGCTGCAATGGCTTCC	60.457	55.000	0.00	0.00	41.91	3.46
508	603	0.523072	TCTTTCGCTGCAATGGCTTC	59.477	50.000	0.00	0.00	41.91	3.86
536	631	0.667993	GCCAGTCTCTCATCTCTCGG	59.332	60.000	0.00	0.00	0.00	4.63
538	633	3.820557	ACTAGCCAGTCTCTCATCTCTC	58.179	50.000	0.00	0.00	0.00	3.20
544	639	2.232452	GCTTCAACTAGCCAGTCTCTCA	59.768	50.000	0.00	0.00	35.06	3.27
550	645	2.234908	CCTACTGCTTCAACTAGCCAGT	59.765	50.000	0.00	0.00	40.49	4.00
587	682	1.082690	GCTGAGTACTTGCCTTGCTC	58.917	55.000	0.00	0.00	0.00	4.26
590	685	1.021390	CCCGCTGAGTACTTGCCTTG	61.021	60.000	13.72	5.45	0.00	3.61
591	686	1.192146	TCCCGCTGAGTACTTGCCTT	61.192	55.000	13.72	0.00	0.00	4.35
592	687	1.608717	CTCCCGCTGAGTACTTGCCT	61.609	60.000	13.72	0.00	36.27	4.75
593	688	1.153549	CTCCCGCTGAGTACTTGCC	60.154	63.158	13.72	0.00	36.27	4.52
624	735	3.434940	AAAAGGCGATAAAGTGGGAGT	57.565	42.857	0.00	0.00	0.00	3.85
625	736	3.756434	TGAAAAAGGCGATAAAGTGGGAG	59.244	43.478	0.00	0.00	0.00	4.30
626	737	3.757270	TGAAAAAGGCGATAAAGTGGGA	58.243	40.909	0.00	0.00	0.00	4.37
627	738	4.082245	ACATGAAAAAGGCGATAAAGTGGG	60.082	41.667	0.00	0.00	0.00	4.61
810	932	8.417124	TCCTAGTAGTAGGGAGCTAACGCTAC	62.417	50.000	21.32	17.18	44.98	3.58
811	933	4.262808	CCTAGTAGTAGGGAGCTAACGCTA	60.263	50.000	15.09	0.00	42.74	4.26
812	934	3.496515	CCTAGTAGTAGGGAGCTAACGCT	60.497	52.174	15.09	0.00	42.70	5.07
813	935	2.813172	CCTAGTAGTAGGGAGCTAACGC	59.187	54.545	15.09	0.00	42.25	4.84
814	936	4.064388	GTCCTAGTAGTAGGGAGCTAACG	58.936	52.174	21.32	0.00	45.65	3.18
815	937	5.065235	CAGTCCTAGTAGTAGGGAGCTAAC	58.935	50.000	21.32	12.01	45.65	2.34
816	938	4.725810	ACAGTCCTAGTAGTAGGGAGCTAA	59.274	45.833	21.32	0.48	45.65	3.09
1019	1155	4.436998	CCGCGTGACCCTCTCCAC	62.437	72.222	4.92	0.00	0.00	4.02
1184	1326	3.119096	GCGGGGAGACGTTCTTGC	61.119	66.667	0.00	0.00	35.98	4.01
2805	2977	1.732917	CCAGTAGAGGCAGAGCGAG	59.267	63.158	0.00	0.00	0.00	5.03
2900	3078	2.011540	AAGACCGATCGGCTTCTTTC	57.988	50.000	33.62	21.52	39.32	2.62
2948	3126	6.634035	CGGATCATTACAACGACGAAATAGTA	59.366	38.462	0.00	0.00	0.00	1.82
2949	3127	5.457799	CGGATCATTACAACGACGAAATAGT	59.542	40.000	0.00	0.00	0.00	2.12
2950	3128	5.684184	TCGGATCATTACAACGACGAAATAG	59.316	40.000	0.00	0.00	0.00	1.73
3114	3300	3.097672	CACCACCACACACACACG	58.902	61.111	0.00	0.00	0.00	4.49
3125	3311	0.882927	TAGAAACGCACTGCACCACC	60.883	55.000	1.11	0.00	0.00	4.61
3219	3412	1.000486	TCAAGGACGGAGGGAGGAG	60.000	63.158	0.00	0.00	0.00	3.69
3220	3413	1.305046	GTCAAGGACGGAGGGAGGA	60.305	63.158	0.00	0.00	0.00	3.71
3221	3414	2.359967	GGTCAAGGACGGAGGGAGG	61.360	68.421	0.00	0.00	32.65	4.30
3222	3415	2.711922	CGGTCAAGGACGGAGGGAG	61.712	68.421	0.00	0.00	35.37	4.30
3223	3416	2.678934	CGGTCAAGGACGGAGGGA	60.679	66.667	0.00	0.00	35.37	4.20
3224	3417	2.502692	GAACGGTCAAGGACGGAGGG	62.503	65.000	10.36	0.00	36.58	4.30
3225	3418	1.080025	GAACGGTCAAGGACGGAGG	60.080	63.158	10.36	0.00	36.58	4.30
3257	3450	2.076863	CCCGTTGAAGTTGCTCTAAGG	58.923	52.381	0.00	0.00	0.00	2.69
3270	3463	0.609151	TGTTTAGATCGGCCCGTTGA	59.391	50.000	1.63	0.00	0.00	3.18
3282	3475	2.068837	ACGAAATCGCCGTGTTTAGA	57.931	45.000	2.15	0.00	44.43	2.10
3373	3569	2.831685	ATATAGATTGGCGCGTTGGA	57.168	45.000	8.43	0.00	0.00	3.53
3384	3580	3.179443	CCACGCCGGCATATATAGATT	57.821	47.619	28.98	0.00	0.00	2.40
3416	3612	9.276397	GTTAAATGCAAATCATGTAAAATTGGC	57.724	29.630	0.00	0.00	36.80	4.52
3472	3673	1.339631	TGGACGGCCAGACTATTTTGG	60.340	52.381	5.41	0.00	39.92	3.28
3583	3785	2.026641	GCATATGTGGGCTCATGTTGT	58.973	47.619	4.29	0.00	0.00	3.32
3674	3876	2.076863	GAGTAGCGGCAACATTTGAGT	58.923	47.619	1.45	0.00	0.00	3.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.