Multiple sequence alignment - TraesCS1D01G211900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G211900 chr1D 100.000 3732 0 0 1 3732 297539916 297536185 0.000000e+00 6892
1 TraesCS1D01G211900 chr1D 90.435 115 11 0 1295 1409 377973957 377974071 6.460000e-33 152
2 TraesCS1D01G211900 chr1D 91.509 106 4 4 5 109 113826686 113826585 1.400000e-29 141
3 TraesCS1D01G211900 chr1A 93.015 2992 102 48 130 3090 370111377 370108462 0.000000e+00 4268
4 TraesCS1D01G211900 chr1A 92.952 454 20 7 3287 3732 370108227 370107778 0.000000e+00 651
5 TraesCS1D01G211900 chr1A 91.304 115 10 0 1295 1409 478567443 478567557 1.390000e-34 158
6 TraesCS1D01G211900 chr1B 95.335 2358 65 22 177 2507 400315063 400312724 0.000000e+00 3703
7 TraesCS1D01G211900 chr1B 94.583 480 16 3 2617 3089 400312706 400312230 0.000000e+00 734
8 TraesCS1D01G211900 chr1B 95.197 458 20 2 3276 3732 400311980 400311524 0.000000e+00 723
9 TraesCS1D01G211900 chr1B 96.040 202 7 1 3084 3285 400312199 400311999 9.990000e-86 327
10 TraesCS1D01G211900 chr1B 90.435 115 11 0 1295 1409 505626346 505626460 6.460000e-33 152
11 TraesCS1D01G211900 chr1B 98.305 59 1 0 130 188 400315360 400315302 1.830000e-18 104
12 TraesCS1D01G211900 chr2D 93.204 103 7 0 1310 1412 520526995 520526893 6.460000e-33 152
13 TraesCS1D01G211900 chr2D 85.833 120 16 1 2307 2425 520525767 520525648 3.910000e-25 126
14 TraesCS1D01G211900 chr5A 87.500 128 16 0 1285 1412 547332381 547332254 8.350000e-32 148
15 TraesCS1D01G211900 chr5A 90.566 106 5 4 5 109 133386820 133386719 6.500000e-28 135
16 TraesCS1D01G211900 chr5A 90.385 104 5 4 5 107 22736825 22736924 8.410000e-27 132
17 TraesCS1D01G211900 chr6B 88.983 118 13 0 1295 1412 708668023 708667906 3.000000e-31 147
18 TraesCS1D01G211900 chr5D 92.233 103 8 0 1310 1412 432514628 432514526 3.000000e-31 147
19 TraesCS1D01G211900 chr2B 91.509 106 4 4 5 109 132133982 132133881 1.400000e-29 141
20 TraesCS1D01G211900 chr2B 90.566 106 5 4 5 109 773565203 773565304 6.500000e-28 135
21 TraesCS1D01G211900 chr2B 85.039 127 18 1 2307 2432 612688421 612688295 1.090000e-25 128
22 TraesCS1D01G211900 chr3D 91.262 103 5 4 7 109 524863366 524863464 1.810000e-28 137
23 TraesCS1D01G211900 chr3D 90.476 105 6 3 8 112 21444194 21444094 6.500000e-28 135
24 TraesCS1D01G211900 chr7B 89.908 109 6 4 5 112 617829839 617829735 6.500000e-28 135
25 TraesCS1D01G211900 chr4D 90.566 106 5 5 5 109 278330375 278330274 6.500000e-28 135
26 TraesCS1D01G211900 chr2A 82.857 140 21 3 2307 2443 665710108 665709969 5.060000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G211900 chr1D 297536185 297539916 3731 True 6892.0 6892 100.0000 1 3732 1 chr1D.!!$R2 3731
1 TraesCS1D01G211900 chr1A 370107778 370111377 3599 True 2459.5 4268 92.9835 130 3732 2 chr1A.!!$R1 3602
2 TraesCS1D01G211900 chr1B 400311524 400315360 3836 True 1118.2 3703 95.8920 130 3732 5 chr1B.!!$R1 3602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 467 0.106519 ATCCAGCCCAGCAATACCAC 60.107 55.0 0.00 0.0 0.00 4.16 F
298 549 0.320771 CACTTCCTTCCCACGACCAG 60.321 60.0 0.00 0.0 0.00 4.00 F
647 913 0.512518 GTGGAATTGCAAAAAGGCGC 59.487 50.0 1.71 0.0 36.28 6.53 F
2603 2892 0.827507 TGATCGGGCGAGATGGATGA 60.828 55.0 0.00 0.0 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1711 1996 0.313672 ACGACGCATTTTGTTGGCAT 59.686 45.000 0.00 0.00 0.00 4.40 R
1725 2010 2.094539 CTGCGCATGTCAACGACG 59.905 61.111 12.24 0.00 34.95 5.12 R
2608 2897 1.002201 TGCCCAACATCCTGCAAAATG 59.998 47.619 6.46 6.46 0.00 2.32 R
3609 3991 0.613012 AGATGAAGTTTGGGCAGCCC 60.613 55.000 25.54 25.54 45.71 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.511465 CTGAAATAAATCCAGGAATAAATGCG 57.489 34.615 0.00 0.00 0.00 4.73
32 33 8.231692 TGAAATAAATCCAGGAATAAATGCGA 57.768 30.769 0.00 0.00 0.00 5.10
33 34 8.352201 TGAAATAAATCCAGGAATAAATGCGAG 58.648 33.333 0.00 0.00 0.00 5.03
34 35 4.574599 AAATCCAGGAATAAATGCGAGC 57.425 40.909 0.00 0.00 0.00 5.03
35 36 1.581934 TCCAGGAATAAATGCGAGCG 58.418 50.000 0.00 0.00 0.00 5.03
36 37 1.138069 TCCAGGAATAAATGCGAGCGA 59.862 47.619 0.00 0.00 0.00 4.93
37 38 1.528586 CCAGGAATAAATGCGAGCGAG 59.471 52.381 0.00 0.00 0.00 5.03
38 39 1.070309 CAGGAATAAATGCGAGCGAGC 60.070 52.381 0.00 0.00 37.71 5.03
45 46 2.573340 TGCGAGCGAGCATCAGAA 59.427 55.556 5.05 0.00 42.92 3.02
46 47 1.142531 TGCGAGCGAGCATCAGAAT 59.857 52.632 5.05 0.00 42.92 2.40
47 48 0.460811 TGCGAGCGAGCATCAGAATT 60.461 50.000 5.05 0.00 42.92 2.17
48 49 0.654683 GCGAGCGAGCATCAGAATTT 59.345 50.000 0.00 0.00 37.05 1.82
49 50 1.594034 GCGAGCGAGCATCAGAATTTG 60.594 52.381 0.00 0.00 37.05 2.32
50 51 1.929169 CGAGCGAGCATCAGAATTTGA 59.071 47.619 0.00 0.00 40.85 2.69
51 52 2.349580 CGAGCGAGCATCAGAATTTGAA 59.650 45.455 0.00 0.00 39.77 2.69
52 53 3.678662 GAGCGAGCATCAGAATTTGAAC 58.321 45.455 0.00 0.00 39.77 3.18
53 54 2.421424 AGCGAGCATCAGAATTTGAACC 59.579 45.455 0.00 0.00 39.77 3.62
54 55 2.478539 GCGAGCATCAGAATTTGAACCC 60.479 50.000 0.00 0.00 39.77 4.11
55 56 3.012518 CGAGCATCAGAATTTGAACCCT 58.987 45.455 0.00 0.00 39.77 4.34
56 57 3.181503 CGAGCATCAGAATTTGAACCCTG 60.182 47.826 0.00 0.00 39.77 4.45
57 58 4.012374 GAGCATCAGAATTTGAACCCTGA 58.988 43.478 0.00 0.00 39.77 3.86
58 59 4.607239 AGCATCAGAATTTGAACCCTGAT 58.393 39.130 0.00 0.00 44.48 2.90
62 63 4.012374 TCAGAATTTGAACCCTGATGAGC 58.988 43.478 0.00 0.00 31.45 4.26
63 64 3.129988 CAGAATTTGAACCCTGATGAGCC 59.870 47.826 0.00 0.00 0.00 4.70
64 65 1.755179 ATTTGAACCCTGATGAGCCG 58.245 50.000 0.00 0.00 0.00 5.52
65 66 0.322456 TTTGAACCCTGATGAGCCGG 60.322 55.000 0.00 0.00 0.00 6.13
66 67 2.190578 GAACCCTGATGAGCCGGG 59.809 66.667 2.18 0.00 43.79 5.73
67 68 2.285368 AACCCTGATGAGCCGGGA 60.285 61.111 3.61 0.00 40.55 5.14
68 69 1.694169 AACCCTGATGAGCCGGGAT 60.694 57.895 3.61 0.00 40.55 3.85
69 70 0.399949 AACCCTGATGAGCCGGGATA 60.400 55.000 3.61 0.00 40.55 2.59
70 71 1.122019 ACCCTGATGAGCCGGGATAC 61.122 60.000 3.61 0.00 40.55 2.24
82 83 4.701286 GGATACCACGGTCCCTCT 57.299 61.111 0.00 0.00 0.00 3.69
83 84 3.835810 GGATACCACGGTCCCTCTA 57.164 57.895 0.00 0.00 0.00 2.43
84 85 2.077687 GGATACCACGGTCCCTCTAA 57.922 55.000 0.00 0.00 0.00 2.10
85 86 1.685517 GGATACCACGGTCCCTCTAAC 59.314 57.143 0.00 0.00 0.00 2.34
86 87 1.685517 GATACCACGGTCCCTCTAACC 59.314 57.143 0.00 0.00 0.00 2.85
87 88 0.409092 TACCACGGTCCCTCTAACCA 59.591 55.000 0.00 0.00 36.53 3.67
88 89 0.252558 ACCACGGTCCCTCTAACCAT 60.253 55.000 0.00 0.00 36.53 3.55
89 90 0.464452 CCACGGTCCCTCTAACCATC 59.536 60.000 0.00 0.00 36.53 3.51
90 91 1.486211 CACGGTCCCTCTAACCATCT 58.514 55.000 0.00 0.00 36.53 2.90
91 92 2.662866 CACGGTCCCTCTAACCATCTA 58.337 52.381 0.00 0.00 36.53 1.98
92 93 3.028850 CACGGTCCCTCTAACCATCTAA 58.971 50.000 0.00 0.00 36.53 2.10
93 94 3.029570 ACGGTCCCTCTAACCATCTAAC 58.970 50.000 0.00 0.00 36.53 2.34
94 95 2.364647 CGGTCCCTCTAACCATCTAACC 59.635 54.545 0.00 0.00 36.53 2.85
95 96 3.381335 GGTCCCTCTAACCATCTAACCA 58.619 50.000 0.00 0.00 36.75 3.67
96 97 3.134262 GGTCCCTCTAACCATCTAACCAC 59.866 52.174 0.00 0.00 36.75 4.16
97 98 3.773119 GTCCCTCTAACCATCTAACCACA 59.227 47.826 0.00 0.00 0.00 4.17
98 99 4.030913 TCCCTCTAACCATCTAACCACAG 58.969 47.826 0.00 0.00 0.00 3.66
99 100 3.134804 CCCTCTAACCATCTAACCACAGG 59.865 52.174 0.00 0.00 0.00 4.00
100 101 3.775316 CCTCTAACCATCTAACCACAGGT 59.225 47.826 0.00 0.00 37.65 4.00
102 103 5.160607 TCTAACCATCTAACCACAGGTTG 57.839 43.478 11.51 2.53 46.35 3.77
110 111 2.113139 CCACAGGTTGGTTCGCCT 59.887 61.111 0.00 0.00 41.10 5.52
111 112 1.528309 CCACAGGTTGGTTCGCCTT 60.528 57.895 0.00 0.00 41.10 4.35
112 113 0.250553 CCACAGGTTGGTTCGCCTTA 60.251 55.000 0.00 0.00 41.10 2.69
113 114 1.600023 CACAGGTTGGTTCGCCTTAA 58.400 50.000 0.00 0.00 38.36 1.85
114 115 1.950909 CACAGGTTGGTTCGCCTTAAA 59.049 47.619 0.00 0.00 38.36 1.52
115 116 2.359531 CACAGGTTGGTTCGCCTTAAAA 59.640 45.455 0.00 0.00 38.36 1.52
116 117 3.005367 CACAGGTTGGTTCGCCTTAAAAT 59.995 43.478 0.00 0.00 38.36 1.82
117 118 3.005367 ACAGGTTGGTTCGCCTTAAAATG 59.995 43.478 0.00 0.00 38.36 2.32
118 119 3.005367 CAGGTTGGTTCGCCTTAAAATGT 59.995 43.478 0.00 0.00 38.36 2.71
119 120 3.005367 AGGTTGGTTCGCCTTAAAATGTG 59.995 43.478 0.00 0.00 38.36 3.21
120 121 3.243602 GGTTGGTTCGCCTTAAAATGTGT 60.244 43.478 0.00 0.00 38.36 3.72
121 122 4.023021 GGTTGGTTCGCCTTAAAATGTGTA 60.023 41.667 0.00 0.00 38.36 2.90
122 123 5.507650 GGTTGGTTCGCCTTAAAATGTGTAA 60.508 40.000 0.00 0.00 38.36 2.41
123 124 5.110940 TGGTTCGCCTTAAAATGTGTAAC 57.889 39.130 0.00 0.00 38.36 2.50
124 125 4.579340 TGGTTCGCCTTAAAATGTGTAACA 59.421 37.500 0.00 0.00 45.70 2.41
125 126 5.505985 TGGTTCGCCTTAAAATGTGTAACAC 60.506 40.000 0.00 0.00 44.81 3.32
126 127 7.847531 TGGTTCGCCTTAAAATGTGTAACACA 61.848 38.462 0.00 0.00 44.81 3.72
127 128 9.232388 TGGTTCGCCTTAAAATGTGTAACACAA 62.232 37.037 0.00 0.00 44.81 3.33
207 458 2.353357 TTAGCAATGATCCAGCCCAG 57.647 50.000 0.00 0.00 0.00 4.45
216 467 0.106519 ATCCAGCCCAGCAATACCAC 60.107 55.000 0.00 0.00 0.00 4.16
298 549 0.320771 CACTTCCTTCCCACGACCAG 60.321 60.000 0.00 0.00 0.00 4.00
405 662 4.847444 GCCGCTTCTCCCCTCTGC 62.847 72.222 0.00 0.00 0.00 4.26
406 663 3.393970 CCGCTTCTCCCCTCTGCA 61.394 66.667 0.00 0.00 0.00 4.41
408 665 2.125350 GCTTCTCCCCTCTGCACG 60.125 66.667 0.00 0.00 0.00 5.34
409 666 2.948720 GCTTCTCCCCTCTGCACGT 61.949 63.158 0.00 0.00 0.00 4.49
482 741 3.107601 TGATAGAGGGAACACTTGGAGG 58.892 50.000 0.00 0.00 31.93 4.30
508 767 4.578105 ACACAAGAGCTTTTCTTCTTCCAG 59.422 41.667 0.00 0.00 44.34 3.86
567 829 1.904287 ATCAGCGGCACAAAAGGTAA 58.096 45.000 1.45 0.00 0.00 2.85
569 831 2.235016 TCAGCGGCACAAAAGGTAATT 58.765 42.857 1.45 0.00 0.00 1.40
570 832 2.625790 TCAGCGGCACAAAAGGTAATTT 59.374 40.909 1.45 0.00 0.00 1.82
571 833 2.730928 CAGCGGCACAAAAGGTAATTTG 59.269 45.455 1.45 0.00 44.11 2.32
572 834 1.459209 GCGGCACAAAAGGTAATTTGC 59.541 47.619 0.00 0.00 42.68 3.68
574 836 3.389221 CGGCACAAAAGGTAATTTGCTT 58.611 40.909 0.00 0.00 42.68 3.91
575 837 4.551388 CGGCACAAAAGGTAATTTGCTTA 58.449 39.130 0.00 0.00 42.68 3.09
576 838 4.985409 CGGCACAAAAGGTAATTTGCTTAA 59.015 37.500 0.00 0.00 42.68 1.85
585 851 8.658840 AAAGGTAATTTGCTTAACTTCCCATA 57.341 30.769 0.00 0.00 44.81 2.74
587 853 8.838649 AGGTAATTTGCTTAACTTCCCATATT 57.161 30.769 0.00 0.00 33.36 1.28
647 913 0.512518 GTGGAATTGCAAAAAGGCGC 59.487 50.000 1.71 0.00 36.28 6.53
786 1052 3.492313 CCATCGTCTAAAAAGCAGCAAC 58.508 45.455 0.00 0.00 0.00 4.17
846 1112 3.483411 CGGGAAATGCGCTTAAATTTTGC 60.483 43.478 9.73 0.79 0.00 3.68
848 1114 4.393934 GGAAATGCGCTTAAATTTTGCAC 58.606 39.130 9.73 6.75 38.54 4.57
850 1116 5.334028 GGAAATGCGCTTAAATTTTGCACTT 60.334 36.000 9.73 8.14 38.54 3.16
851 1117 4.908966 ATGCGCTTAAATTTTGCACTTC 57.091 36.364 9.73 3.62 38.54 3.01
877 1143 4.441356 GCACAGGAGTTCAAATTTTGTCCA 60.441 41.667 15.67 0.00 0.00 4.02
966 1241 2.150397 AACTGTACTGCACGAAGGAC 57.850 50.000 0.00 0.00 0.00 3.85
984 1259 2.615747 GGACGGAAGAAAGGAAGGAAGG 60.616 54.545 0.00 0.00 0.00 3.46
985 1260 2.302157 GACGGAAGAAAGGAAGGAAGGA 59.698 50.000 0.00 0.00 0.00 3.36
986 1261 2.709397 ACGGAAGAAAGGAAGGAAGGAA 59.291 45.455 0.00 0.00 0.00 3.36
987 1262 3.244596 ACGGAAGAAAGGAAGGAAGGAAG 60.245 47.826 0.00 0.00 0.00 3.46
988 1263 3.085533 GGAAGAAAGGAAGGAAGGAAGC 58.914 50.000 0.00 0.00 0.00 3.86
989 1264 2.889170 AGAAAGGAAGGAAGGAAGCC 57.111 50.000 0.00 0.00 0.00 4.35
990 1265 2.065799 AGAAAGGAAGGAAGGAAGCCA 58.934 47.619 0.00 0.00 0.00 4.75
991 1266 2.447047 AGAAAGGAAGGAAGGAAGCCAA 59.553 45.455 0.00 0.00 0.00 4.52
992 1267 3.076634 AGAAAGGAAGGAAGGAAGCCAAT 59.923 43.478 0.00 0.00 0.00 3.16
1419 1704 1.736645 CAACCTCTACGCCACGGTG 60.737 63.158 0.00 0.00 0.00 4.94
1701 1986 5.163814 GGTGATGATCTTTCTTTGTTCCGAG 60.164 44.000 0.00 0.00 0.00 4.63
1711 1996 4.956085 TCTTTGTTCCGAGTTCTGATCAA 58.044 39.130 0.00 0.00 0.00 2.57
1725 2010 4.247258 TCTGATCAATGCCAACAAAATGC 58.753 39.130 0.00 0.00 0.00 3.56
1769 2054 1.376466 GGACAGCTTCCAGAAGGCA 59.624 57.895 9.36 0.00 45.10 4.75
1784 2069 1.185618 AGGCAGAGTTCTGGTACGCA 61.186 55.000 10.88 0.00 43.94 5.24
2442 2730 4.220602 AGGTAGCCAATCAAATCAACAACC 59.779 41.667 0.00 0.00 0.00 3.77
2508 2796 9.671279 ACATACATTTATCTGAACTTGACATCA 57.329 29.630 0.00 0.00 0.00 3.07
2518 2806 9.848710 ATCTGAACTTGACATCATCATTTCTAT 57.151 29.630 0.00 0.00 37.11 1.98
2519 2807 9.322773 TCTGAACTTGACATCATCATTTCTATC 57.677 33.333 0.00 0.00 37.11 2.08
2520 2808 9.327628 CTGAACTTGACATCATCATTTCTATCT 57.672 33.333 0.00 0.00 37.11 1.98
2521 2809 9.106070 TGAACTTGACATCATCATTTCTATCTG 57.894 33.333 0.00 0.00 37.11 2.90
2522 2810 9.322773 GAACTTGACATCATCATTTCTATCTGA 57.677 33.333 0.00 0.00 37.11 3.27
2523 2811 9.676861 AACTTGACATCATCATTTCTATCTGAA 57.323 29.630 0.00 0.00 37.11 3.02
2524 2812 9.107177 ACTTGACATCATCATTTCTATCTGAAC 57.893 33.333 0.00 0.00 37.11 3.18
2525 2813 9.327628 CTTGACATCATCATTTCTATCTGAACT 57.672 33.333 0.00 0.00 37.11 3.01
2526 2814 9.676861 TTGACATCATCATTTCTATCTGAACTT 57.323 29.630 0.00 0.00 37.11 2.66
2527 2815 9.106070 TGACATCATCATTTCTATCTGAACTTG 57.894 33.333 0.00 0.00 30.50 3.16
2528 2816 9.322773 GACATCATCATTTCTATCTGAACTTGA 57.677 33.333 0.00 0.00 33.88 3.02
2529 2817 9.107177 ACATCATCATTTCTATCTGAACTTGAC 57.893 33.333 0.00 0.00 32.97 3.18
2565 2854 5.554070 TCATCACACACTTGATCTTGATGT 58.446 37.500 8.74 0.00 40.69 3.06
2571 2860 6.815142 CACACACTTGATCTTGATGTAGATGA 59.185 38.462 0.00 0.00 35.06 2.92
2588 2877 7.755591 TGTAGATGAAATGCTGTTTTCTGATC 58.244 34.615 8.22 0.00 36.71 2.92
2592 2881 1.098050 ATGCTGTTTTCTGATCGGGC 58.902 50.000 0.62 0.00 0.00 6.13
2603 2892 0.827507 TGATCGGGCGAGATGGATGA 60.828 55.000 0.00 0.00 0.00 2.92
2605 2894 0.979665 ATCGGGCGAGATGGATGATT 59.020 50.000 0.00 0.00 0.00 2.57
2608 2897 1.532868 CGGGCGAGATGGATGATTTTC 59.467 52.381 0.00 0.00 0.00 2.29
2609 2898 2.575532 GGGCGAGATGGATGATTTTCA 58.424 47.619 0.00 0.00 0.00 2.69
2612 2901 4.038402 GGGCGAGATGGATGATTTTCATTT 59.962 41.667 0.00 0.00 37.20 2.32
2615 2904 5.051240 GCGAGATGGATGATTTTCATTTTGC 60.051 40.000 0.00 0.00 37.20 3.68
2762 3051 1.448497 GGACCAAACCTGACGGACA 59.552 57.895 0.00 0.00 0.00 4.02
2860 3153 0.108520 GTGATGGGAAACGGCGTAGA 60.109 55.000 15.20 0.00 0.00 2.59
2874 3167 4.108336 CGGCGTAGATTAGGATGATGATG 58.892 47.826 0.00 0.00 0.00 3.07
2875 3168 4.142381 CGGCGTAGATTAGGATGATGATGA 60.142 45.833 0.00 0.00 0.00 2.92
2876 3169 5.451103 CGGCGTAGATTAGGATGATGATGAT 60.451 44.000 0.00 0.00 0.00 2.45
3002 3297 8.688151 ACTAACAGTGAGTCCTGTAAGATATTC 58.312 37.037 12.78 0.00 44.74 1.75
3044 3345 2.620251 TTCAGGTTGTGTCTGACCAG 57.380 50.000 5.17 0.00 40.51 4.00
3090 3396 4.046938 TCTTGCTCATCGATCTTGGTAC 57.953 45.455 0.00 0.00 0.00 3.34
3096 3438 4.619394 GCTCATCGATCTTGGTACCTATGG 60.619 50.000 14.36 5.88 0.00 2.74
3208 3551 1.801178 CTTGACTCGCTGAAAACCTCC 59.199 52.381 0.00 0.00 0.00 4.30
3209 3552 0.319555 TGACTCGCTGAAAACCTCCG 60.320 55.000 0.00 0.00 0.00 4.63
3265 3610 2.836479 TGATGATCAAATGCACTGCG 57.164 45.000 0.00 0.00 0.00 5.18
3285 3630 2.480037 CGCTTCATACACACACACACAT 59.520 45.455 0.00 0.00 0.00 3.21
3309 3682 6.455647 TGTAGTTGACATCCACTTTGAGTAG 58.544 40.000 0.00 0.00 31.20 2.57
3323 3696 2.632377 TGAGTAGCAGCAAATACAGGC 58.368 47.619 0.00 0.00 0.00 4.85
3351 3725 5.988561 GCACATGTTTATCCAAGGAAACAAA 59.011 36.000 9.66 1.45 45.78 2.83
3500 3881 6.364706 ACACATGTACACACAAACACAAAAAG 59.635 34.615 0.00 0.00 38.42 2.27
3609 3991 1.376424 AAGAGGCATGGCTGTGACG 60.376 57.895 28.55 0.00 30.43 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 7.596248 CGCATTTATTCCTGGATTTATTTCAGG 59.404 37.037 0.00 0.00 46.91 3.86
6 7 8.352201 TCGCATTTATTCCTGGATTTATTTCAG 58.648 33.333 0.00 0.00 0.00 3.02
7 8 8.231692 TCGCATTTATTCCTGGATTTATTTCA 57.768 30.769 0.00 0.00 0.00 2.69
8 9 7.327032 GCTCGCATTTATTCCTGGATTTATTTC 59.673 37.037 0.00 0.00 0.00 2.17
9 10 7.147976 GCTCGCATTTATTCCTGGATTTATTT 58.852 34.615 0.00 0.00 0.00 1.40
10 11 6.568462 CGCTCGCATTTATTCCTGGATTTATT 60.568 38.462 0.00 0.00 0.00 1.40
11 12 5.106555 CGCTCGCATTTATTCCTGGATTTAT 60.107 40.000 0.00 0.00 0.00 1.40
12 13 4.213270 CGCTCGCATTTATTCCTGGATTTA 59.787 41.667 0.00 0.00 0.00 1.40
13 14 3.003689 CGCTCGCATTTATTCCTGGATTT 59.996 43.478 0.00 0.00 0.00 2.17
14 15 2.549754 CGCTCGCATTTATTCCTGGATT 59.450 45.455 0.00 0.00 0.00 3.01
15 16 2.146342 CGCTCGCATTTATTCCTGGAT 58.854 47.619 0.00 0.00 0.00 3.41
16 17 1.138069 TCGCTCGCATTTATTCCTGGA 59.862 47.619 0.00 0.00 0.00 3.86
17 18 1.528586 CTCGCTCGCATTTATTCCTGG 59.471 52.381 0.00 0.00 0.00 4.45
18 19 1.070309 GCTCGCTCGCATTTATTCCTG 60.070 52.381 0.00 0.00 0.00 3.86
19 20 1.221414 GCTCGCTCGCATTTATTCCT 58.779 50.000 0.00 0.00 0.00 3.36
20 21 0.937304 TGCTCGCTCGCATTTATTCC 59.063 50.000 0.00 0.00 34.44 3.01
28 29 0.460811 AATTCTGATGCTCGCTCGCA 60.461 50.000 0.00 0.00 45.10 5.10
29 30 0.654683 AAATTCTGATGCTCGCTCGC 59.345 50.000 0.00 0.00 0.00 5.03
30 31 1.929169 TCAAATTCTGATGCTCGCTCG 59.071 47.619 0.00 0.00 0.00 5.03
31 32 3.486542 GGTTCAAATTCTGATGCTCGCTC 60.487 47.826 0.00 0.00 32.78 5.03
32 33 2.421424 GGTTCAAATTCTGATGCTCGCT 59.579 45.455 0.00 0.00 32.78 4.93
33 34 2.478539 GGGTTCAAATTCTGATGCTCGC 60.479 50.000 0.00 0.00 32.78 5.03
34 35 3.012518 AGGGTTCAAATTCTGATGCTCG 58.987 45.455 0.00 0.00 32.78 5.03
35 36 4.012374 TCAGGGTTCAAATTCTGATGCTC 58.988 43.478 0.00 0.00 32.78 4.26
36 37 4.038271 TCAGGGTTCAAATTCTGATGCT 57.962 40.909 0.00 0.00 32.78 3.79
37 38 4.996788 ATCAGGGTTCAAATTCTGATGC 57.003 40.909 4.71 0.00 43.02 3.91
39 40 4.643784 GCTCATCAGGGTTCAAATTCTGAT 59.356 41.667 0.00 0.00 44.79 2.90
40 41 4.012374 GCTCATCAGGGTTCAAATTCTGA 58.988 43.478 0.00 0.00 40.04 3.27
41 42 3.129988 GGCTCATCAGGGTTCAAATTCTG 59.870 47.826 0.00 0.00 0.00 3.02
42 43 3.359950 GGCTCATCAGGGTTCAAATTCT 58.640 45.455 0.00 0.00 0.00 2.40
43 44 2.098117 CGGCTCATCAGGGTTCAAATTC 59.902 50.000 0.00 0.00 0.00 2.17
44 45 2.094675 CGGCTCATCAGGGTTCAAATT 58.905 47.619 0.00 0.00 0.00 1.82
45 46 1.683011 CCGGCTCATCAGGGTTCAAAT 60.683 52.381 0.00 0.00 0.00 2.32
46 47 0.322456 CCGGCTCATCAGGGTTCAAA 60.322 55.000 0.00 0.00 0.00 2.69
47 48 1.299648 CCGGCTCATCAGGGTTCAA 59.700 57.895 0.00 0.00 0.00 2.69
48 49 2.669133 CCCGGCTCATCAGGGTTCA 61.669 63.158 0.00 0.00 44.19 3.18
49 50 2.190578 CCCGGCTCATCAGGGTTC 59.809 66.667 0.00 0.00 44.19 3.62
53 54 1.121407 TGGTATCCCGGCTCATCAGG 61.121 60.000 0.00 0.00 0.00 3.86
54 55 0.034059 GTGGTATCCCGGCTCATCAG 59.966 60.000 0.00 0.00 0.00 2.90
55 56 1.744320 CGTGGTATCCCGGCTCATCA 61.744 60.000 0.00 0.00 0.00 3.07
56 57 1.006102 CGTGGTATCCCGGCTCATC 60.006 63.158 0.00 0.00 0.00 2.92
57 58 2.507854 CCGTGGTATCCCGGCTCAT 61.508 63.158 0.00 0.00 37.43 2.90
58 59 3.151710 CCGTGGTATCCCGGCTCA 61.152 66.667 0.00 0.00 37.43 4.26
62 63 3.543641 GGGACCGTGGTATCCCGG 61.544 72.222 0.00 0.00 45.26 5.73
65 66 1.685517 GTTAGAGGGACCGTGGTATCC 59.314 57.143 0.00 0.00 0.00 2.59
66 67 1.685517 GGTTAGAGGGACCGTGGTATC 59.314 57.143 0.00 0.00 0.00 2.24
67 68 1.007479 TGGTTAGAGGGACCGTGGTAT 59.993 52.381 0.00 0.00 40.13 2.73
68 69 0.409092 TGGTTAGAGGGACCGTGGTA 59.591 55.000 0.00 0.00 40.13 3.25
69 70 0.252558 ATGGTTAGAGGGACCGTGGT 60.253 55.000 0.00 0.00 40.13 4.16
70 71 0.464452 GATGGTTAGAGGGACCGTGG 59.536 60.000 0.00 0.00 40.13 4.94
71 72 1.486211 AGATGGTTAGAGGGACCGTG 58.514 55.000 0.00 0.00 40.13 4.94
72 73 3.029570 GTTAGATGGTTAGAGGGACCGT 58.970 50.000 0.00 0.00 40.13 4.83
73 74 2.364647 GGTTAGATGGTTAGAGGGACCG 59.635 54.545 0.00 0.00 40.13 4.79
74 75 3.134262 GTGGTTAGATGGTTAGAGGGACC 59.866 52.174 0.00 0.00 37.69 4.46
75 76 3.773119 TGTGGTTAGATGGTTAGAGGGAC 59.227 47.826 0.00 0.00 0.00 4.46
76 77 4.030913 CTGTGGTTAGATGGTTAGAGGGA 58.969 47.826 0.00 0.00 0.00 4.20
77 78 3.134804 CCTGTGGTTAGATGGTTAGAGGG 59.865 52.174 0.00 0.00 0.00 4.30
78 79 3.775316 ACCTGTGGTTAGATGGTTAGAGG 59.225 47.826 0.00 0.00 27.29 3.69
79 80 5.178797 CAACCTGTGGTTAGATGGTTAGAG 58.821 45.833 1.34 0.00 45.01 2.43
80 81 4.019681 CCAACCTGTGGTTAGATGGTTAGA 60.020 45.833 1.34 0.00 45.01 2.10
81 82 4.261801 CCAACCTGTGGTTAGATGGTTAG 58.738 47.826 1.34 0.00 45.01 2.34
82 83 4.295141 CCAACCTGTGGTTAGATGGTTA 57.705 45.455 1.34 0.00 45.01 2.85
83 84 3.154827 CCAACCTGTGGTTAGATGGTT 57.845 47.619 1.34 0.00 45.01 3.67
84 85 2.879103 CCAACCTGTGGTTAGATGGT 57.121 50.000 1.34 0.00 45.01 3.55
94 95 1.600023 TTAAGGCGAACCAACCTGTG 58.400 50.000 0.00 0.00 39.06 3.66
95 96 2.351706 TTTAAGGCGAACCAACCTGT 57.648 45.000 0.00 0.00 39.06 4.00
96 97 3.005367 ACATTTTAAGGCGAACCAACCTG 59.995 43.478 0.00 0.00 39.06 4.00
97 98 3.005367 CACATTTTAAGGCGAACCAACCT 59.995 43.478 0.00 0.00 39.06 3.50
98 99 3.243602 ACACATTTTAAGGCGAACCAACC 60.244 43.478 0.00 0.00 39.06 3.77
99 100 3.972403 ACACATTTTAAGGCGAACCAAC 58.028 40.909 0.00 0.00 39.06 3.77
100 101 5.067413 TGTTACACATTTTAAGGCGAACCAA 59.933 36.000 0.00 0.00 39.06 3.67
101 102 4.579340 TGTTACACATTTTAAGGCGAACCA 59.421 37.500 0.00 0.00 39.06 3.67
102 103 4.913345 GTGTTACACATTTTAAGGCGAACC 59.087 41.667 10.96 0.00 34.08 3.62
103 104 5.512473 TGTGTTACACATTTTAAGGCGAAC 58.488 37.500 14.73 0.00 39.62 3.95
104 105 5.752892 TGTGTTACACATTTTAAGGCGAA 57.247 34.783 14.73 0.00 39.62 4.70
105 106 5.752892 TTGTGTTACACATTTTAAGGCGA 57.247 34.783 19.32 0.00 44.16 5.54
106 107 5.744345 TGTTTGTGTTACACATTTTAAGGCG 59.256 36.000 19.32 0.00 44.16 5.52
107 108 7.707774 ATGTTTGTGTTACACATTTTAAGGC 57.292 32.000 19.32 0.92 44.16 4.35
110 111 9.099454 GGGAAATGTTTGTGTTACACATTTTAA 57.901 29.630 19.32 7.59 44.16 1.52
111 112 7.711339 GGGGAAATGTTTGTGTTACACATTTTA 59.289 33.333 19.32 0.90 44.16 1.52
112 113 6.540551 GGGGAAATGTTTGTGTTACACATTTT 59.459 34.615 19.32 15.14 44.16 1.82
113 114 6.052360 GGGGAAATGTTTGTGTTACACATTT 58.948 36.000 19.32 15.53 44.16 2.32
114 115 5.454045 GGGGGAAATGTTTGTGTTACACATT 60.454 40.000 19.32 9.86 44.16 2.71
115 116 4.039852 GGGGGAAATGTTTGTGTTACACAT 59.960 41.667 19.32 2.67 44.16 3.21
116 117 3.385111 GGGGGAAATGTTTGTGTTACACA 59.615 43.478 14.73 14.73 43.02 3.72
117 118 3.639561 AGGGGGAAATGTTTGTGTTACAC 59.360 43.478 8.76 8.76 34.56 2.90
118 119 3.892588 GAGGGGGAAATGTTTGTGTTACA 59.107 43.478 0.00 0.00 0.00 2.41
119 120 4.149598 AGAGGGGGAAATGTTTGTGTTAC 58.850 43.478 0.00 0.00 0.00 2.50
120 121 4.463050 AGAGGGGGAAATGTTTGTGTTA 57.537 40.909 0.00 0.00 0.00 2.41
121 122 3.328535 AGAGGGGGAAATGTTTGTGTT 57.671 42.857 0.00 0.00 0.00 3.32
122 123 3.117131 AGAAGAGGGGGAAATGTTTGTGT 60.117 43.478 0.00 0.00 0.00 3.72
123 124 3.500343 AGAAGAGGGGGAAATGTTTGTG 58.500 45.455 0.00 0.00 0.00 3.33
124 125 3.903530 AGAAGAGGGGGAAATGTTTGT 57.096 42.857 0.00 0.00 0.00 2.83
125 126 5.551305 AAAAGAAGAGGGGGAAATGTTTG 57.449 39.130 0.00 0.00 0.00 2.93
126 127 7.179160 CAGATAAAAGAAGAGGGGGAAATGTTT 59.821 37.037 0.00 0.00 0.00 2.83
127 128 6.665248 CAGATAAAAGAAGAGGGGGAAATGTT 59.335 38.462 0.00 0.00 0.00 2.71
128 129 6.190587 CAGATAAAAGAAGAGGGGGAAATGT 58.809 40.000 0.00 0.00 0.00 2.71
134 135 3.523564 TGGACAGATAAAAGAAGAGGGGG 59.476 47.826 0.00 0.00 0.00 5.40
207 458 2.870411 GGATAGTCAACCGTGGTATTGC 59.130 50.000 0.00 0.00 0.00 3.56
216 467 7.713507 TGTATGAAATTAAGGGATAGTCAACCG 59.286 37.037 0.00 0.00 0.00 4.44
364 619 2.290008 TGTGAGCAACGGATGGTATGTT 60.290 45.455 0.00 0.00 40.59 2.71
405 662 1.872952 TCTCTCAACAATGGCAACGTG 59.127 47.619 0.00 0.00 42.51 4.49
406 663 2.146342 CTCTCTCAACAATGGCAACGT 58.854 47.619 0.00 0.00 42.51 3.99
408 665 3.668447 TCTCTCTCTCAACAATGGCAAC 58.332 45.455 0.00 0.00 0.00 4.17
409 666 4.356405 TTCTCTCTCTCAACAATGGCAA 57.644 40.909 0.00 0.00 0.00 4.52
482 741 5.506483 GGAAGAAGAAAAGCTCTTGTGTTCC 60.506 44.000 6.18 0.00 44.82 3.62
521 782 3.137176 TCCTAAGCCAATGATCTCCTTGG 59.863 47.826 14.34 14.34 43.93 3.61
567 829 9.660544 AGGAATAATATGGGAAGTTAAGCAAAT 57.339 29.630 0.00 0.00 0.00 2.32
569 831 9.487442 AAAGGAATAATATGGGAAGTTAAGCAA 57.513 29.630 0.00 0.00 0.00 3.91
570 832 8.912988 CAAAGGAATAATATGGGAAGTTAAGCA 58.087 33.333 0.00 0.00 0.00 3.91
571 833 9.131791 TCAAAGGAATAATATGGGAAGTTAAGC 57.868 33.333 0.00 0.00 0.00 3.09
576 838 8.424133 GCAAATCAAAGGAATAATATGGGAAGT 58.576 33.333 0.00 0.00 0.00 3.01
585 851 7.622713 TGTTGGATGCAAATCAAAGGAATAAT 58.377 30.769 0.00 0.00 0.00 1.28
587 853 6.602410 TGTTGGATGCAAATCAAAGGAATA 57.398 33.333 0.00 0.00 0.00 1.75
647 913 1.000385 TGCATGGGAAGAAAACAAGCG 60.000 47.619 0.00 0.00 32.06 4.68
735 1001 1.414919 TCCATACCAATCCACGGCTAC 59.585 52.381 0.00 0.00 0.00 3.58
741 1007 2.505819 AGGTGACTCCATACCAATCCAC 59.494 50.000 0.00 0.00 39.46 4.02
846 1112 0.861837 GAACTCCTGTGCGTGAAGTG 59.138 55.000 0.00 0.00 0.00 3.16
848 1114 1.581934 TTGAACTCCTGTGCGTGAAG 58.418 50.000 0.00 0.00 0.00 3.02
850 1116 2.254546 ATTTGAACTCCTGTGCGTGA 57.745 45.000 0.00 0.00 0.00 4.35
851 1117 3.354089 AAATTTGAACTCCTGTGCGTG 57.646 42.857 0.00 0.00 0.00 5.34
966 1241 3.339141 CTTCCTTCCTTCCTTTCTTCCG 58.661 50.000 0.00 0.00 0.00 4.30
988 1263 4.261741 GCTGTCAGCCATGGTTATTATTGG 60.262 45.833 14.27 0.00 34.48 3.16
989 1264 4.338964 TGCTGTCAGCCATGGTTATTATTG 59.661 41.667 21.99 0.00 41.51 1.90
990 1265 4.535781 TGCTGTCAGCCATGGTTATTATT 58.464 39.130 21.99 0.00 41.51 1.40
991 1266 4.139786 CTGCTGTCAGCCATGGTTATTAT 58.860 43.478 21.99 0.00 41.51 1.28
992 1267 3.544684 CTGCTGTCAGCCATGGTTATTA 58.455 45.455 21.99 0.00 41.51 0.98
1419 1704 1.949257 CTTGTGGCAGTTCCCGAAC 59.051 57.895 0.00 0.00 41.45 3.95
1701 1986 5.390145 GCATTTTGTTGGCATTGATCAGAAC 60.390 40.000 0.00 0.00 0.00 3.01
1711 1996 0.313672 ACGACGCATTTTGTTGGCAT 59.686 45.000 0.00 0.00 0.00 4.40
1725 2010 2.094539 CTGCGCATGTCAACGACG 59.905 61.111 12.24 0.00 34.95 5.12
2442 2730 2.103537 TGATGCAGATATGGGATGCG 57.896 50.000 0.00 0.00 42.92 4.73
2507 2795 9.106070 TCATGTCAAGTTCAGATAGAAATGATG 57.894 33.333 0.00 0.00 38.13 3.07
2508 2796 9.848710 ATCATGTCAAGTTCAGATAGAAATGAT 57.151 29.630 0.00 0.00 38.13 2.45
2509 2797 9.322773 GATCATGTCAAGTTCAGATAGAAATGA 57.677 33.333 0.00 0.00 38.13 2.57
2515 2803 7.927092 ACTGATGATCATGTCAAGTTCAGATAG 59.073 37.037 20.17 1.51 41.10 2.08
2517 2805 6.651086 ACTGATGATCATGTCAAGTTCAGAT 58.349 36.000 20.17 6.76 41.10 2.90
2518 2806 6.046290 ACTGATGATCATGTCAAGTTCAGA 57.954 37.500 20.17 0.00 41.10 3.27
2519 2807 6.738832 AACTGATGATCATGTCAAGTTCAG 57.261 37.500 14.30 14.29 42.87 3.02
2520 2808 6.732531 GAACTGATGATCATGTCAAGTTCA 57.267 37.500 26.40 14.24 45.53 3.18
2521 2809 6.732531 TGAACTGATGATCATGTCAAGTTC 57.267 37.500 25.56 25.56 45.97 3.01
2522 2810 6.882678 TGATGAACTGATGATCATGTCAAGTT 59.117 34.615 14.30 15.82 39.46 2.66
2523 2811 6.315642 GTGATGAACTGATGATCATGTCAAGT 59.684 38.462 14.30 8.35 40.97 3.16
2524 2812 6.315393 TGTGATGAACTGATGATCATGTCAAG 59.685 38.462 14.30 7.73 40.97 3.02
2525 2813 6.093082 GTGTGATGAACTGATGATCATGTCAA 59.907 38.462 14.30 0.00 40.97 3.18
2526 2814 5.583457 GTGTGATGAACTGATGATCATGTCA 59.417 40.000 14.30 11.10 42.06 3.58
2527 2815 5.583457 TGTGTGATGAACTGATGATCATGTC 59.417 40.000 14.30 0.40 36.12 3.06
2528 2816 5.353400 GTGTGTGATGAACTGATGATCATGT 59.647 40.000 14.30 2.53 36.12 3.21
2529 2817 5.585047 AGTGTGTGATGAACTGATGATCATG 59.415 40.000 14.30 1.80 36.12 3.07
2565 2854 6.037500 CCGATCAGAAAACAGCATTTCATCTA 59.962 38.462 10.86 0.00 40.89 1.98
2571 2860 2.094545 GCCCGATCAGAAAACAGCATTT 60.095 45.455 0.00 0.00 0.00 2.32
2588 2877 1.532868 GAAAATCATCCATCTCGCCCG 59.467 52.381 0.00 0.00 0.00 6.13
2592 2881 6.037726 TGCAAAATGAAAATCATCCATCTCG 58.962 36.000 0.00 0.00 35.76 4.04
2603 2892 5.005094 CCCAACATCCTGCAAAATGAAAAT 58.995 37.500 13.40 0.00 0.00 1.82
2605 2894 3.806507 GCCCAACATCCTGCAAAATGAAA 60.807 43.478 13.40 0.00 0.00 2.69
2608 2897 1.002201 TGCCCAACATCCTGCAAAATG 59.998 47.619 6.46 6.46 0.00 2.32
2609 2898 1.276989 CTGCCCAACATCCTGCAAAAT 59.723 47.619 0.00 0.00 32.58 1.82
2612 2901 1.607178 CCTGCCCAACATCCTGCAA 60.607 57.895 0.00 0.00 32.58 4.08
2615 2904 2.898920 ATCGCCTGCCCAACATCCTG 62.899 60.000 0.00 0.00 0.00 3.86
2762 3051 3.374367 TCGTTCATTCTCTCGACGAATCT 59.626 43.478 0.00 0.00 39.46 2.40
2860 3153 7.487822 ACCGTAAGATCATCATCATCCTAAT 57.512 36.000 0.00 0.00 43.02 1.73
2957 3250 7.836842 TGTTAGTCAGACAAACTCTGCATATA 58.163 34.615 2.66 0.00 45.64 0.86
3044 3345 0.242017 GGGCAAATCAGACACACTGC 59.758 55.000 0.00 0.00 45.38 4.40
3090 3396 3.256631 ACAAGCTTTTTGACAGCCATAGG 59.743 43.478 0.00 0.00 38.09 2.57
3096 3438 8.624776 AGGATATATAACAAGCTTTTTGACAGC 58.375 33.333 8.12 0.00 37.56 4.40
3208 3551 6.823678 ATCGCAGTAAATTCTACTAAACCG 57.176 37.500 1.59 0.00 0.00 4.44
3209 3552 9.090692 TGTTATCGCAGTAAATTCTACTAAACC 57.909 33.333 1.59 0.00 0.00 3.27
3265 3610 3.250762 ACATGTGTGTGTGTGTATGAAGC 59.749 43.478 0.00 0.00 37.14 3.86
3285 3630 5.290493 ACTCAAAGTGGATGTCAACTACA 57.710 39.130 0.00 0.00 43.86 2.74
3309 3682 1.226491 CGCTGCCTGTATTTGCTGC 60.226 57.895 0.00 0.00 45.49 5.25
3323 3696 2.478370 CCTTGGATAAACATGTGCGCTG 60.478 50.000 9.73 0.08 0.00 5.18
3351 3725 1.414919 TCAGTTAAGTTGGACCACGCT 59.585 47.619 0.00 0.00 0.00 5.07
3609 3991 0.613012 AGATGAAGTTTGGGCAGCCC 60.613 55.000 25.54 25.54 45.71 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.