Multiple sequence alignment - TraesCS1D01G211700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G211700 chr1D 100.000 7079 0 0 1 7079 297520528 297527606 0.000000e+00 13073
1 TraesCS1D01G211700 chr1A 93.015 5598 255 59 795 6318 370092359 370097894 0.000000e+00 8046
2 TraesCS1D01G211700 chr1A 88.070 285 16 7 6725 6996 370099147 370099426 8.860000e-84 322
3 TraesCS1D01G211700 chr1A 90.286 175 9 4 6557 6729 370098901 370099069 9.240000e-54 222
4 TraesCS1D01G211700 chr1A 88.372 172 10 4 6401 6572 370098442 370098603 1.560000e-46 198
5 TraesCS1D01G211700 chr1A 96.000 75 3 0 721 795 370085385 370085459 9.640000e-24 122
6 TraesCS1D01G211700 chr1A 98.462 65 1 0 6324 6388 370098315 370098379 1.610000e-21 115
7 TraesCS1D01G211700 chr1B 92.062 3137 163 36 3309 6388 400300172 400303279 0.000000e+00 4335
8 TraesCS1D01G211700 chr1B 93.820 2573 95 28 777 3325 400292590 400295122 0.000000e+00 3812
9 TraesCS1D01G211700 chr1B 90.456 702 59 8 1 697 349509247 349508549 0.000000e+00 918
10 TraesCS1D01G211700 chr1B 91.369 336 13 7 6401 6729 400303339 400303665 5.040000e-121 446
11 TraesCS1D01G211700 chr1B 90.547 201 7 6 6724 6922 400303754 400303944 9.110000e-64 255
12 TraesCS1D01G211700 chr4D 97.135 698 19 1 1 697 498946709 498947406 0.000000e+00 1177
13 TraesCS1D01G211700 chr4D 90.085 706 49 9 1 697 453460966 453460273 0.000000e+00 896
14 TraesCS1D01G211700 chr4D 76.960 421 88 9 2018 2433 505327171 505327587 1.540000e-56 231
15 TraesCS1D01G211700 chr5D 91.869 701 49 7 1 697 60024714 60025410 0.000000e+00 972
16 TraesCS1D01G211700 chr2A 91.761 704 43 8 1 697 124285571 124286266 0.000000e+00 965
17 TraesCS1D01G211700 chr7D 91.147 689 54 7 12 697 109069371 109070055 0.000000e+00 928
18 TraesCS1D01G211700 chrUn 90.272 699 63 5 1 697 274373723 274373028 0.000000e+00 909
19 TraesCS1D01G211700 chrUn 90.272 699 63 5 1 697 282117996 282118691 0.000000e+00 909
20 TraesCS1D01G211700 chr6D 90.300 701 59 9 1 697 306835885 306835190 0.000000e+00 909
21 TraesCS1D01G211700 chr5A 77.197 421 87 9 2018 2433 689605632 689606048 3.300000e-58 237
22 TraesCS1D01G211700 chr4B 77.381 420 75 15 2018 2433 651988496 651988899 1.540000e-56 231


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G211700 chr1D 297520528 297527606 7078 False 13073.000000 13073 100.000 1 7079 1 chr1D.!!$F1 7078
1 TraesCS1D01G211700 chr1A 370092359 370099426 7067 False 1780.600000 8046 91.641 795 6996 5 chr1A.!!$F2 6201
2 TraesCS1D01G211700 chr1B 400292590 400295122 2532 False 3812.000000 3812 93.820 777 3325 1 chr1B.!!$F1 2548
3 TraesCS1D01G211700 chr1B 400300172 400303944 3772 False 1678.666667 4335 91.326 3309 6922 3 chr1B.!!$F2 3613
4 TraesCS1D01G211700 chr1B 349508549 349509247 698 True 918.000000 918 90.456 1 697 1 chr1B.!!$R1 696
5 TraesCS1D01G211700 chr4D 498946709 498947406 697 False 1177.000000 1177 97.135 1 697 1 chr4D.!!$F1 696
6 TraesCS1D01G211700 chr4D 453460273 453460966 693 True 896.000000 896 90.085 1 697 1 chr4D.!!$R1 696
7 TraesCS1D01G211700 chr5D 60024714 60025410 696 False 972.000000 972 91.869 1 697 1 chr5D.!!$F1 696
8 TraesCS1D01G211700 chr2A 124285571 124286266 695 False 965.000000 965 91.761 1 697 1 chr2A.!!$F1 696
9 TraesCS1D01G211700 chr7D 109069371 109070055 684 False 928.000000 928 91.147 12 697 1 chr7D.!!$F1 685
10 TraesCS1D01G211700 chrUn 274373028 274373723 695 True 909.000000 909 90.272 1 697 1 chrUn.!!$R1 696
11 TraesCS1D01G211700 chrUn 282117996 282118691 695 False 909.000000 909 90.272 1 697 1 chrUn.!!$F1 696
12 TraesCS1D01G211700 chr6D 306835190 306835885 695 True 909.000000 909 90.300 1 697 1 chr6D.!!$R1 696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
925 944 0.112412 GGTGGGACCCAAATGTCAGT 59.888 55.000 16.98 0.00 36.97 3.41 F
1660 1688 0.383368 GCGCACAACAATTTGCTTGC 60.383 50.000 0.30 2.25 38.50 4.01 F
2367 2395 0.178990 GTGGGGCTGTTCTTGGTCTT 60.179 55.000 0.00 0.00 0.00 3.01 F
2392 2420 2.234661 CCTGCTCCTGAGTACACATTCA 59.765 50.000 0.00 0.00 0.00 2.57 F
2538 2566 4.642437 TGTTGTACTTTCCACTTTGCATGA 59.358 37.500 0.00 0.00 0.00 3.07 F
3846 3912 4.645588 AGCTACTACTGTGGTTAGATGTCC 59.354 45.833 1.10 0.00 0.00 4.02 F
5072 5154 0.248539 CCGCTCTCGTTAGGTACAGC 60.249 60.000 0.00 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1814 1842 0.108041 CCATCTGGCCCACATTTTGC 60.108 55.000 0.00 0.0 0.00 3.68 R
2690 2733 3.386078 TCCTTCCTGCAGATATCACTGAC 59.614 47.826 17.39 0.0 39.94 3.51 R
3739 3805 0.389037 TCTGACAGTGACAGCGATGC 60.389 55.000 16.48 0.0 35.61 3.91 R
3793 3859 2.550830 AGCAGTGTTACCTGAACTGG 57.449 50.000 4.39 0.0 41.31 4.00 R
4432 4502 0.817654 GCCCTGGTCCAAATAGCAAC 59.182 55.000 0.00 0.0 0.00 4.17 R
5792 5883 0.251787 AAGACCTTGCAACCCCATCC 60.252 55.000 0.00 0.0 0.00 3.51 R
6115 6232 0.034896 GTCGGGTTTCTCCTTGAGCA 59.965 55.000 0.00 0.0 36.25 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 3.775654 CCCGCTCAGACCTGGTCC 61.776 72.222 22.81 6.97 32.18 4.46
586 590 2.295909 CTGAAAAGTGGGCCAATTTCGA 59.704 45.455 29.67 18.48 35.15 3.71
697 711 4.308526 CAACGGCTGGAGATGCTT 57.691 55.556 0.00 0.00 0.00 3.91
698 712 2.093216 CAACGGCTGGAGATGCTTC 58.907 57.895 0.00 0.00 0.00 3.86
699 713 1.078143 AACGGCTGGAGATGCTTCC 60.078 57.895 0.00 0.00 37.77 3.46
700 714 1.557269 AACGGCTGGAGATGCTTCCT 61.557 55.000 0.00 0.00 38.12 3.36
701 715 1.227497 CGGCTGGAGATGCTTCCTC 60.227 63.158 0.00 0.00 38.12 3.71
702 716 1.684386 CGGCTGGAGATGCTTCCTCT 61.684 60.000 0.00 0.00 38.12 3.69
703 717 0.179051 GGCTGGAGATGCTTCCTCTG 60.179 60.000 0.00 0.00 38.12 3.35
704 718 0.540923 GCTGGAGATGCTTCCTCTGT 59.459 55.000 0.00 0.00 38.12 3.41
705 719 1.759445 GCTGGAGATGCTTCCTCTGTA 59.241 52.381 0.00 0.00 38.12 2.74
706 720 2.169352 GCTGGAGATGCTTCCTCTGTAA 59.831 50.000 0.00 0.00 38.12 2.41
707 721 3.369892 GCTGGAGATGCTTCCTCTGTAAA 60.370 47.826 0.00 0.00 38.12 2.01
708 722 4.836825 CTGGAGATGCTTCCTCTGTAAAA 58.163 43.478 0.00 0.00 38.12 1.52
709 723 5.435291 CTGGAGATGCTTCCTCTGTAAAAT 58.565 41.667 0.00 0.00 38.12 1.82
710 724 5.819991 TGGAGATGCTTCCTCTGTAAAATT 58.180 37.500 0.00 0.00 38.12 1.82
711 725 6.248433 TGGAGATGCTTCCTCTGTAAAATTT 58.752 36.000 0.00 0.00 38.12 1.82
712 726 7.402054 TGGAGATGCTTCCTCTGTAAAATTTA 58.598 34.615 0.00 0.00 38.12 1.40
713 727 7.888021 TGGAGATGCTTCCTCTGTAAAATTTAA 59.112 33.333 0.00 0.00 38.12 1.52
714 728 8.739972 GGAGATGCTTCCTCTGTAAAATTTAAA 58.260 33.333 0.00 0.00 34.27 1.52
715 729 9.561270 GAGATGCTTCCTCTGTAAAATTTAAAC 57.439 33.333 0.00 0.00 0.00 2.01
716 730 8.237267 AGATGCTTCCTCTGTAAAATTTAAACG 58.763 33.333 0.00 0.00 0.00 3.60
717 731 7.499321 TGCTTCCTCTGTAAAATTTAAACGA 57.501 32.000 0.00 0.00 0.00 3.85
718 732 7.581476 TGCTTCCTCTGTAAAATTTAAACGAG 58.419 34.615 0.00 5.18 0.00 4.18
719 733 6.523546 GCTTCCTCTGTAAAATTTAAACGAGC 59.476 38.462 0.00 0.00 0.00 5.03
720 734 7.499321 TTCCTCTGTAAAATTTAAACGAGCA 57.501 32.000 0.00 0.00 0.00 4.26
721 735 7.681939 TCCTCTGTAAAATTTAAACGAGCAT 57.318 32.000 0.00 0.00 0.00 3.79
722 736 8.780846 TCCTCTGTAAAATTTAAACGAGCATA 57.219 30.769 0.00 0.00 0.00 3.14
723 737 9.391006 TCCTCTGTAAAATTTAAACGAGCATAT 57.609 29.630 0.00 0.00 0.00 1.78
740 754 8.433126 ACGAGCATATAGTAAAATGTATTTCGC 58.567 33.333 0.00 0.00 0.00 4.70
741 755 8.432359 CGAGCATATAGTAAAATGTATTTCGCA 58.568 33.333 0.00 0.00 0.00 5.10
743 757 9.878599 AGCATATAGTAAAATGTATTTCGCAAC 57.121 29.630 0.00 0.00 0.00 4.17
744 758 9.878599 GCATATAGTAAAATGTATTTCGCAACT 57.121 29.630 0.00 0.00 0.00 3.16
748 762 6.386654 AGTAAAATGTATTTCGCAACTTGGG 58.613 36.000 0.00 0.00 0.00 4.12
749 763 5.461032 AAAATGTATTTCGCAACTTGGGA 57.539 34.783 4.46 4.46 37.56 4.37
750 764 4.701956 AATGTATTTCGCAACTTGGGAG 57.298 40.909 8.40 0.00 40.47 4.30
751 765 2.432444 TGTATTTCGCAACTTGGGAGG 58.568 47.619 8.40 0.00 40.47 4.30
752 766 1.743394 GTATTTCGCAACTTGGGAGGG 59.257 52.381 8.40 0.00 40.47 4.30
753 767 0.611896 ATTTCGCAACTTGGGAGGGG 60.612 55.000 8.40 0.00 40.47 4.79
754 768 2.002018 TTTCGCAACTTGGGAGGGGT 62.002 55.000 8.40 0.00 40.47 4.95
755 769 2.672996 CGCAACTTGGGAGGGGTG 60.673 66.667 0.00 0.00 31.21 4.61
756 770 2.283173 GCAACTTGGGAGGGGTGG 60.283 66.667 0.00 0.00 0.00 4.61
757 771 2.283173 CAACTTGGGAGGGGTGGC 60.283 66.667 0.00 0.00 0.00 5.01
758 772 2.780924 AACTTGGGAGGGGTGGCA 60.781 61.111 0.00 0.00 0.00 4.92
759 773 2.169810 AACTTGGGAGGGGTGGCAT 61.170 57.895 0.00 0.00 0.00 4.40
760 774 2.155197 AACTTGGGAGGGGTGGCATC 62.155 60.000 0.00 0.00 0.00 3.91
761 775 3.346734 TTGGGAGGGGTGGCATCC 61.347 66.667 8.74 8.74 0.00 3.51
762 776 4.692041 TGGGAGGGGTGGCATCCA 62.692 66.667 20.42 3.99 34.62 3.41
763 777 3.813724 GGGAGGGGTGGCATCCAG 61.814 72.222 20.42 0.00 32.34 3.86
764 778 3.813724 GGAGGGGTGGCATCCAGG 61.814 72.222 20.42 0.00 32.34 4.45
765 779 3.813724 GAGGGGTGGCATCCAGGG 61.814 72.222 20.42 0.00 32.34 4.45
847 866 0.240145 GGCGCTCCTGTTTTGGTTAC 59.760 55.000 7.64 0.00 0.00 2.50
923 942 1.074072 CGGTGGGACCCAAATGTCA 59.926 57.895 16.98 0.00 36.97 3.58
925 944 0.112412 GGTGGGACCCAAATGTCAGT 59.888 55.000 16.98 0.00 36.97 3.41
928 947 3.492337 GTGGGACCCAAATGTCAGTTTA 58.508 45.455 16.98 0.00 36.97 2.01
1019 1038 2.182030 CGTCTCCCTTGCTCGGTC 59.818 66.667 0.00 0.00 0.00 4.79
1410 1432 6.582677 TCTGAAAGTTGAACACTGGAAAAA 57.417 33.333 0.00 0.00 35.12 1.94
1493 1520 8.437360 ACTTTATTATCGTTGATGCAGATTCA 57.563 30.769 0.00 0.00 0.00 2.57
1497 1524 4.871993 ATCGTTGATGCAGATTCAGAAC 57.128 40.909 0.00 0.00 0.00 3.01
1608 1635 5.711506 TGTGATTTCCACTATGAACTGCATT 59.288 36.000 0.00 0.00 45.86 3.56
1648 1676 2.906388 ACACCATGCAGCGCACAA 60.906 55.556 11.47 0.00 43.04 3.33
1660 1688 0.383368 GCGCACAACAATTTGCTTGC 60.383 50.000 0.30 2.25 38.50 4.01
1814 1842 7.860872 TCGTGCAAACTGACTATATGTATACTG 59.139 37.037 4.17 0.00 0.00 2.74
1929 1957 3.370209 GGACAGGTTTGTATGGGAGGTAC 60.370 52.174 0.00 0.00 37.76 3.34
2114 2142 1.738030 GCAATGAGGATGCAAACTGGC 60.738 52.381 0.00 0.00 43.29 4.85
2214 2242 3.218453 AGATGGGTCAGTCGTCTATCTG 58.782 50.000 0.00 0.00 0.00 2.90
2240 2268 2.299867 GTTGGGTCATTTCCATTGTGCT 59.700 45.455 0.00 0.00 33.82 4.40
2261 2289 3.846423 ATGTCATTGTTTATGTGCGCA 57.154 38.095 5.66 5.66 35.64 6.09
2367 2395 0.178990 GTGGGGCTGTTCTTGGTCTT 60.179 55.000 0.00 0.00 0.00 3.01
2392 2420 2.234661 CCTGCTCCTGAGTACACATTCA 59.765 50.000 0.00 0.00 0.00 2.57
2441 2469 9.308318 GAACTACTTTAAGGTTTGCATCAAAAA 57.692 29.630 0.00 0.00 35.03 1.94
2480 2508 9.166173 TGTCCACTACTTTCATGAGATATTTTG 57.834 33.333 0.00 0.00 0.00 2.44
2538 2566 4.642437 TGTTGTACTTTCCACTTTGCATGA 59.358 37.500 0.00 0.00 0.00 3.07
2539 2567 5.301551 TGTTGTACTTTCCACTTTGCATGAT 59.698 36.000 0.00 0.00 0.00 2.45
2544 2572 5.772521 ACTTTCCACTTTGCATGATAACAC 58.227 37.500 0.00 0.00 0.00 3.32
2546 2574 5.781210 TTCCACTTTGCATGATAACACAA 57.219 34.783 0.00 0.00 0.00 3.33
2567 2595 9.725019 ACACAATTCAGACTAGAAATTATGTCA 57.275 29.630 0.00 0.00 32.41 3.58
2597 2640 9.705290 ATTATAGTACTGTTTTTGCCTTTTTGG 57.295 29.630 5.39 0.00 39.35 3.28
2653 2696 6.255887 GGAATTCCAACTCACTTATGTACGAG 59.744 42.308 20.04 0.00 35.64 4.18
2947 2994 7.722795 TTATGTTTCTGACGTCTTGATTTGA 57.277 32.000 17.92 1.18 0.00 2.69
2951 2998 8.148807 TGTTTCTGACGTCTTGATTTGATTTA 57.851 30.769 17.92 0.00 0.00 1.40
2952 2999 8.783093 TGTTTCTGACGTCTTGATTTGATTTAT 58.217 29.630 17.92 0.00 0.00 1.40
3041 3089 6.645790 ATCATGTTCTGATTGAAATAGGCC 57.354 37.500 0.00 0.00 42.07 5.19
3070 3118 9.185192 GCCATCAGTACAATTATTTTATTGCTC 57.815 33.333 0.00 0.00 38.74 4.26
3107 3155 5.006649 TGACAAAGCTTAAGCATAGCATACG 59.993 40.000 28.39 8.92 45.16 3.06
3276 3328 5.764686 ACACACACATTGAATTCTTCTGCTA 59.235 36.000 7.05 0.00 0.00 3.49
3470 3523 8.260818 GGTCAAAGCCTATAGAATATAGATGCA 58.739 37.037 0.00 0.00 0.00 3.96
3521 3574 7.231722 AGTCTATTCACTAGCTGAAATCCGTAT 59.768 37.037 0.00 0.00 42.37 3.06
3525 3578 5.972935 TCACTAGCTGAAATCCGTATTCAA 58.027 37.500 0.00 0.00 36.43 2.69
3554 3607 6.142818 TCTTCTGCTATCTTCTCTGCTAAC 57.857 41.667 0.00 0.00 0.00 2.34
3606 3672 9.739276 TTCTTCATTATCAGTATGTGTCCTTTT 57.261 29.630 0.00 0.00 37.40 2.27
3612 3678 8.684386 TTATCAGTATGTGTCCTTTTTGTTGA 57.316 30.769 0.00 0.00 37.40 3.18
3774 3840 7.337689 TCACTGTCAGATATGCTTGCTATTTTT 59.662 33.333 6.91 0.00 0.00 1.94
3846 3912 4.645588 AGCTACTACTGTGGTTAGATGTCC 59.354 45.833 1.10 0.00 0.00 4.02
3871 3937 7.396623 CCGGATATCCTAGTACCATCTTTACTT 59.603 40.741 19.61 0.00 31.99 2.24
3950 4020 6.449635 AAGGCGAAAACTAAATCATATGCA 57.550 33.333 0.00 0.00 0.00 3.96
4164 4234 6.303054 TGAACAGATTACTTTGTGGAATCCA 58.697 36.000 0.00 0.00 31.21 3.41
4171 4241 7.616935 AGATTACTTTGTGGAATCCATCAACAT 59.383 33.333 4.81 5.40 41.68 2.71
4335 4405 7.829725 TCTTATAAATGTTGCAGAACAATGCT 58.170 30.769 0.00 0.00 45.23 3.79
4391 4461 9.334693 CAGTTATTTTAGCACAATTCTTGTCTC 57.665 33.333 0.00 0.00 43.23 3.36
4531 4601 9.495754 GAAAAGTATAATTGATGTTGCTCTGAC 57.504 33.333 0.00 0.00 0.00 3.51
4707 4777 6.200097 GTGGTAAACTGGTAATTGCTTTTGTG 59.800 38.462 0.00 0.00 0.00 3.33
4848 4930 4.402155 TGTGAGAAAAGCTTCCATTTGTGT 59.598 37.500 0.00 0.00 31.28 3.72
4875 4957 1.732259 CGAAGAAGCAAACGGTAGCAT 59.268 47.619 8.00 0.00 0.00 3.79
4920 5002 7.035004 TCACCATATTTATCTTTTTGTGCAGC 58.965 34.615 0.00 0.00 0.00 5.25
4945 5027 7.097409 GCGCATTTTTCATTAAGATTCGTAGAC 60.097 37.037 0.30 0.00 34.32 2.59
4947 5029 8.181573 GCATTTTTCATTAAGATTCGTAGACCA 58.818 33.333 0.00 0.00 34.32 4.02
4950 5032 8.842358 TTTTCATTAAGATTCGTAGACCAACT 57.158 30.769 0.00 0.00 34.32 3.16
4969 5051 7.577979 ACCAACTGTACGTTTTAACATGTATG 58.422 34.615 0.00 0.00 32.27 2.39
5012 5094 5.519927 AGCTTGTAAATGCACTTTGTGAAAC 59.480 36.000 1.52 0.00 35.23 2.78
5071 5153 1.376543 TCCGCTCTCGTTAGGTACAG 58.623 55.000 0.00 0.00 0.00 2.74
5072 5154 0.248539 CCGCTCTCGTTAGGTACAGC 60.249 60.000 0.00 0.00 0.00 4.40
5086 5168 3.507233 AGGTACAGCACATCCATGTTTTG 59.493 43.478 0.00 0.00 39.39 2.44
5109 5191 7.786178 TGTTAATCGTATTCCTCAATCCTTG 57.214 36.000 0.00 0.00 0.00 3.61
5126 5214 4.513442 TCCTTGACCTTCCGTTATGAATG 58.487 43.478 0.00 0.00 0.00 2.67
5127 5215 4.224147 TCCTTGACCTTCCGTTATGAATGA 59.776 41.667 0.00 0.00 0.00 2.57
5128 5216 4.941263 CCTTGACCTTCCGTTATGAATGAA 59.059 41.667 0.00 0.00 0.00 2.57
5129 5217 5.590259 CCTTGACCTTCCGTTATGAATGAAT 59.410 40.000 0.00 0.00 0.00 2.57
5130 5218 6.765989 CCTTGACCTTCCGTTATGAATGAATA 59.234 38.462 0.00 0.00 0.00 1.75
5131 5219 7.445402 CCTTGACCTTCCGTTATGAATGAATAT 59.555 37.037 0.00 0.00 0.00 1.28
5132 5220 7.962964 TGACCTTCCGTTATGAATGAATATC 57.037 36.000 0.00 0.00 0.00 1.63
5261 5349 6.036517 ACTGCTACTGAAAATATCTGAAAGCG 59.963 38.462 0.00 0.00 39.71 4.68
5299 5387 9.593134 TCTGTTTAACACTTTTGCATGTATTTT 57.407 25.926 0.00 0.00 0.00 1.82
5301 5389 9.979270 TGTTTAACACTTTTGCATGTATTTTTG 57.021 25.926 0.00 0.00 0.00 2.44
5347 5435 0.396435 TGTCGGTGGATGAGTTGCTT 59.604 50.000 0.00 0.00 0.00 3.91
5557 5645 0.317160 TGAGTTCCACCACAGTAGCG 59.683 55.000 0.00 0.00 0.00 4.26
5774 5862 0.397941 TTCACCCTGTTCTCTGCCTG 59.602 55.000 0.00 0.00 0.00 4.85
5777 5865 0.548682 ACCCTGTTCTCTGCCTGGAT 60.549 55.000 0.00 0.00 0.00 3.41
5790 5881 5.508567 TCTGCCTGGATTAAAACATGATGA 58.491 37.500 0.00 0.00 0.00 2.92
5791 5882 6.131264 TCTGCCTGGATTAAAACATGATGAT 58.869 36.000 0.00 0.00 0.00 2.45
5792 5883 6.040054 TCTGCCTGGATTAAAACATGATGATG 59.960 38.462 0.00 0.00 35.49 3.07
5825 5916 4.757149 GCAAGGTCTTGTGTATCTTCAGTT 59.243 41.667 11.71 0.00 42.31 3.16
5994 6089 9.686683 AGTGAGCAATGTAAAGTAGGATAAATT 57.313 29.630 0.00 0.00 0.00 1.82
6010 6106 7.775120 AGGATAAATTTCTTGTACTTGCCATG 58.225 34.615 0.00 0.00 0.00 3.66
6029 6125 2.018515 TGTCGGGTGTCTTGGTTTTTC 58.981 47.619 0.00 0.00 0.00 2.29
6031 6127 2.032924 GTCGGGTGTCTTGGTTTTTCTG 59.967 50.000 0.00 0.00 0.00 3.02
6033 6129 2.661718 GGGTGTCTTGGTTTTTCTGGA 58.338 47.619 0.00 0.00 0.00 3.86
6035 6131 3.288092 GGTGTCTTGGTTTTTCTGGAGT 58.712 45.455 0.00 0.00 0.00 3.85
6038 6134 3.288092 GTCTTGGTTTTTCTGGAGTGGT 58.712 45.455 0.00 0.00 0.00 4.16
6039 6135 3.699538 GTCTTGGTTTTTCTGGAGTGGTT 59.300 43.478 0.00 0.00 0.00 3.67
6040 6136 4.159693 GTCTTGGTTTTTCTGGAGTGGTTT 59.840 41.667 0.00 0.00 0.00 3.27
6041 6137 4.159506 TCTTGGTTTTTCTGGAGTGGTTTG 59.840 41.667 0.00 0.00 0.00 2.93
6044 6140 3.445805 GGTTTTTCTGGAGTGGTTTGTGA 59.554 43.478 0.00 0.00 0.00 3.58
6051 6161 5.491070 TCTGGAGTGGTTTGTGATGATAAG 58.509 41.667 0.00 0.00 0.00 1.73
6096 6213 2.481969 CCGCAGTAGCATGATGTACTGT 60.482 50.000 23.30 0.00 45.38 3.55
6115 6232 5.067954 ACTGTTCCTTGCCGTAATAAAAGT 58.932 37.500 0.00 0.00 0.00 2.66
6130 6247 5.966742 ATAAAAGTGCTCAAGGAGAAACC 57.033 39.130 0.00 0.00 39.35 3.27
6140 6257 1.657804 AGGAGAAACCCGACCTTGAT 58.342 50.000 0.00 0.00 40.05 2.57
6145 6263 3.412386 AGAAACCCGACCTTGATGAAAG 58.588 45.455 0.00 0.00 35.47 2.62
6165 6283 1.798725 CAAGCTGGCGAATGTTGCG 60.799 57.895 0.00 0.00 0.00 4.85
6182 6302 2.338015 CGCAATGGCTGGCACTCTT 61.338 57.895 5.88 0.00 38.10 2.85
6183 6303 1.870055 CGCAATGGCTGGCACTCTTT 61.870 55.000 5.88 0.00 38.10 2.52
6189 6309 1.340017 TGGCTGGCACTCTTTATCACC 60.340 52.381 0.00 0.00 0.00 4.02
6192 6312 0.613260 TGGCACTCTTTATCACCGCT 59.387 50.000 0.00 0.00 0.00 5.52
6258 6378 0.951558 GTTGGCATCACAAACGGTCT 59.048 50.000 0.00 0.00 31.17 3.85
6322 6446 6.719370 AGAGGAAATGCTATAGACTGTCCTAG 59.281 42.308 11.74 7.32 34.40 3.02
6375 6914 3.203442 TCCATCTGGACCGTACGC 58.797 61.111 10.49 0.00 39.78 4.42
6389 6928 1.019673 GTACGCTCATCACGGGAGTA 58.980 55.000 0.00 0.00 44.67 2.59
6390 6929 1.019673 TACGCTCATCACGGGAGTAC 58.980 55.000 0.00 0.00 44.67 2.73
6391 6930 0.680280 ACGCTCATCACGGGAGTACT 60.680 55.000 0.00 0.00 44.67 2.73
6392 6931 1.306148 CGCTCATCACGGGAGTACTA 58.694 55.000 0.00 0.00 44.67 1.82
6393 6932 1.002684 CGCTCATCACGGGAGTACTAC 60.003 57.143 0.00 0.00 44.67 2.73
6394 6933 1.002684 GCTCATCACGGGAGTACTACG 60.003 57.143 15.52 15.52 44.67 3.51
6395 6934 2.286872 CTCATCACGGGAGTACTACGT 58.713 52.381 16.66 16.66 44.67 3.57
6398 6937 4.402851 ACGGGAGTACTACGTGCA 57.597 55.556 20.31 0.00 44.60 4.57
6399 6938 1.878775 ACGGGAGTACTACGTGCAC 59.121 57.895 20.31 6.82 44.60 4.57
6436 7025 2.412089 GACTTTTGCCTACGTGCACTAG 59.588 50.000 16.19 14.44 41.88 2.57
6504 7093 2.221299 GCCAGTACAGGGTCCACCA 61.221 63.158 6.42 0.00 43.89 4.17
6555 7144 4.232221 CTGCATTTTGCTTTGTCTGGTAG 58.768 43.478 0.75 0.00 45.31 3.18
6556 7145 3.636300 TGCATTTTGCTTTGTCTGGTAGT 59.364 39.130 0.75 0.00 45.31 2.73
6671 7578 2.226912 AGACTTGACGACTGAGCAGTAC 59.773 50.000 2.65 0.00 42.66 2.73
6672 7579 2.226912 GACTTGACGACTGAGCAGTACT 59.773 50.000 2.65 0.00 42.66 2.73
6673 7580 2.030717 ACTTGACGACTGAGCAGTACTG 60.031 50.000 18.93 18.93 42.66 2.74
6674 7581 1.605753 TGACGACTGAGCAGTACTGT 58.394 50.000 23.44 10.82 42.66 3.55
6675 7582 2.774687 TGACGACTGAGCAGTACTGTA 58.225 47.619 23.44 10.04 42.66 2.74
6712 7620 5.083122 TCCAAGATCCAATTTAAACAGCCA 58.917 37.500 0.00 0.00 0.00 4.75
6737 7747 2.817258 GAGATAGGTGAGTCCGATCCAG 59.183 54.545 3.98 0.00 45.46 3.86
6739 7749 1.101635 TAGGTGAGTCCGATCCAGCG 61.102 60.000 0.00 0.00 41.99 5.18
6741 7751 1.226717 GTGAGTCCGATCCAGCGAC 60.227 63.158 0.00 0.00 0.00 5.19
6743 7753 1.357334 GAGTCCGATCCAGCGACTC 59.643 63.158 9.73 9.73 34.21 3.36
6813 7824 6.285329 GGAATAATATCCATCCCATCCCAT 57.715 41.667 0.00 0.00 39.42 4.00
6814 7825 6.310149 GGAATAATATCCATCCCATCCCATC 58.690 44.000 0.00 0.00 39.42 3.51
6815 7826 6.103797 GGAATAATATCCATCCCATCCCATCT 59.896 42.308 0.00 0.00 39.42 2.90
6816 7827 6.776887 ATAATATCCATCCCATCCCATCTC 57.223 41.667 0.00 0.00 0.00 2.75
6817 7828 2.445806 ATCCATCCCATCCCATCTCA 57.554 50.000 0.00 0.00 0.00 3.27
6871 7882 3.155501 ACAGTACAGTACTCCCACAGTC 58.844 50.000 10.54 0.00 36.76 3.51
6872 7883 2.492484 CAGTACAGTACTCCCACAGTCC 59.508 54.545 10.54 0.00 36.76 3.85
6875 7886 3.759815 ACAGTACTCCCACAGTCCTAT 57.240 47.619 0.00 0.00 36.43 2.57
6876 7887 3.633418 ACAGTACTCCCACAGTCCTATC 58.367 50.000 0.00 0.00 36.43 2.08
6960 7976 1.406860 GCCCAAAAACTCCCAAGGCA 61.407 55.000 0.00 0.00 38.79 4.75
6961 7977 0.681175 CCCAAAAACTCCCAAGGCAG 59.319 55.000 0.00 0.00 0.00 4.85
6962 7978 1.413118 CCAAAAACTCCCAAGGCAGT 58.587 50.000 0.00 0.00 0.00 4.40
6963 7979 2.593026 CCAAAAACTCCCAAGGCAGTA 58.407 47.619 0.00 0.00 0.00 2.74
6972 7995 6.515512 ACTCCCAAGGCAGTACATTATTAT 57.484 37.500 0.00 0.00 0.00 1.28
6977 8000 8.265055 TCCCAAGGCAGTACATTATTATATAGC 58.735 37.037 0.00 0.00 0.00 2.97
6980 8003 6.281405 AGGCAGTACATTATTATATAGCCGC 58.719 40.000 0.00 0.00 42.90 6.53
6990 8013 7.504924 TTATTATATAGCCGCTGCAAAAAGT 57.495 32.000 2.16 0.00 41.13 2.66
6996 8019 1.001815 GCCGCTGCAAAAAGTTACTGA 60.002 47.619 0.00 0.00 37.47 3.41
6997 8020 2.918131 GCCGCTGCAAAAAGTTACTGAG 60.918 50.000 0.00 0.00 37.47 3.35
6998 8021 2.350772 CCGCTGCAAAAAGTTACTGAGG 60.351 50.000 0.00 0.00 0.00 3.86
6999 8022 2.666026 GCTGCAAAAAGTTACTGAGGC 58.334 47.619 0.00 0.00 0.00 4.70
7000 8023 2.294512 GCTGCAAAAAGTTACTGAGGCT 59.705 45.455 0.00 0.00 0.00 4.58
7001 8024 3.502211 GCTGCAAAAAGTTACTGAGGCTA 59.498 43.478 0.00 0.00 0.00 3.93
7002 8025 4.613850 GCTGCAAAAAGTTACTGAGGCTAC 60.614 45.833 0.00 0.00 0.00 3.58
7003 8026 4.456535 TGCAAAAAGTTACTGAGGCTACA 58.543 39.130 0.00 0.00 0.00 2.74
7004 8027 5.070001 TGCAAAAAGTTACTGAGGCTACAT 58.930 37.500 0.00 0.00 0.00 2.29
7005 8028 5.534654 TGCAAAAAGTTACTGAGGCTACATT 59.465 36.000 0.00 0.00 0.00 2.71
7006 8029 6.040391 TGCAAAAAGTTACTGAGGCTACATTT 59.960 34.615 0.00 0.00 0.00 2.32
7007 8030 6.923508 GCAAAAAGTTACTGAGGCTACATTTT 59.076 34.615 0.00 0.00 0.00 1.82
7008 8031 7.114953 GCAAAAAGTTACTGAGGCTACATTTTC 59.885 37.037 0.00 0.00 0.00 2.29
7009 8032 8.352942 CAAAAAGTTACTGAGGCTACATTTTCT 58.647 33.333 0.00 0.00 0.00 2.52
7010 8033 7.674471 AAAGTTACTGAGGCTACATTTTCTC 57.326 36.000 0.00 0.00 0.00 2.87
7011 8034 6.613153 AGTTACTGAGGCTACATTTTCTCT 57.387 37.500 0.00 0.00 0.00 3.10
7012 8035 6.402222 AGTTACTGAGGCTACATTTTCTCTG 58.598 40.000 0.00 0.00 0.00 3.35
7013 8036 6.211584 AGTTACTGAGGCTACATTTTCTCTGA 59.788 38.462 0.00 0.00 0.00 3.27
7014 8037 5.489792 ACTGAGGCTACATTTTCTCTGAA 57.510 39.130 0.00 0.00 0.00 3.02
7015 8038 6.059787 ACTGAGGCTACATTTTCTCTGAAT 57.940 37.500 0.00 0.00 0.00 2.57
7016 8039 7.187824 ACTGAGGCTACATTTTCTCTGAATA 57.812 36.000 0.00 0.00 0.00 1.75
7017 8040 7.624549 ACTGAGGCTACATTTTCTCTGAATAA 58.375 34.615 0.00 0.00 0.00 1.40
7018 8041 8.103305 ACTGAGGCTACATTTTCTCTGAATAAA 58.897 33.333 0.00 0.00 0.00 1.40
7019 8042 9.118300 CTGAGGCTACATTTTCTCTGAATAAAT 57.882 33.333 0.00 0.00 0.00 1.40
7020 8043 9.113838 TGAGGCTACATTTTCTCTGAATAAATC 57.886 33.333 0.00 0.00 0.00 2.17
7021 8044 8.457238 AGGCTACATTTTCTCTGAATAAATCC 57.543 34.615 0.00 0.00 0.00 3.01
7022 8045 7.503902 AGGCTACATTTTCTCTGAATAAATCCC 59.496 37.037 0.00 0.00 0.00 3.85
7023 8046 7.255625 GGCTACATTTTCTCTGAATAAATCCCC 60.256 40.741 0.00 0.00 0.00 4.81
7024 8047 7.285401 GCTACATTTTCTCTGAATAAATCCCCA 59.715 37.037 0.00 0.00 0.00 4.96
7025 8048 9.359653 CTACATTTTCTCTGAATAAATCCCCAT 57.640 33.333 0.00 0.00 0.00 4.00
7026 8049 8.242729 ACATTTTCTCTGAATAAATCCCCATC 57.757 34.615 0.00 0.00 0.00 3.51
7027 8050 7.840716 ACATTTTCTCTGAATAAATCCCCATCA 59.159 33.333 0.00 0.00 0.00 3.07
7028 8051 7.886629 TTTTCTCTGAATAAATCCCCATCAG 57.113 36.000 0.00 0.00 39.04 2.90
7029 8052 6.581388 TTCTCTGAATAAATCCCCATCAGT 57.419 37.500 0.00 0.00 38.83 3.41
7030 8053 6.581388 TCTCTGAATAAATCCCCATCAGTT 57.419 37.500 0.00 0.00 38.83 3.16
7031 8054 7.690454 TCTCTGAATAAATCCCCATCAGTTA 57.310 36.000 0.00 0.00 38.83 2.24
7032 8055 7.739825 TCTCTGAATAAATCCCCATCAGTTAG 58.260 38.462 0.00 0.00 38.83 2.34
7033 8056 7.348274 TCTCTGAATAAATCCCCATCAGTTAGT 59.652 37.037 0.00 0.00 38.83 2.24
7034 8057 7.509546 TCTGAATAAATCCCCATCAGTTAGTC 58.490 38.462 0.00 0.00 38.83 2.59
7035 8058 7.127186 TCTGAATAAATCCCCATCAGTTAGTCA 59.873 37.037 0.00 0.00 38.83 3.41
7036 8059 7.282585 TGAATAAATCCCCATCAGTTAGTCAG 58.717 38.462 0.00 0.00 28.77 3.51
7037 8060 6.831664 ATAAATCCCCATCAGTTAGTCAGT 57.168 37.500 0.00 0.00 0.00 3.41
7038 8061 4.762289 AATCCCCATCAGTTAGTCAGTC 57.238 45.455 0.00 0.00 0.00 3.51
7039 8062 2.467880 TCCCCATCAGTTAGTCAGTCC 58.532 52.381 0.00 0.00 0.00 3.85
7040 8063 2.187958 CCCCATCAGTTAGTCAGTCCA 58.812 52.381 0.00 0.00 0.00 4.02
7041 8064 2.571653 CCCCATCAGTTAGTCAGTCCAA 59.428 50.000 0.00 0.00 0.00 3.53
7042 8065 3.600388 CCCATCAGTTAGTCAGTCCAAC 58.400 50.000 0.00 0.00 0.00 3.77
7043 8066 3.600388 CCATCAGTTAGTCAGTCCAACC 58.400 50.000 0.00 0.00 0.00 3.77
7044 8067 3.261897 CCATCAGTTAGTCAGTCCAACCT 59.738 47.826 0.00 0.00 0.00 3.50
7045 8068 4.263068 CCATCAGTTAGTCAGTCCAACCTT 60.263 45.833 0.00 0.00 0.00 3.50
7046 8069 4.602340 TCAGTTAGTCAGTCCAACCTTC 57.398 45.455 0.00 0.00 0.00 3.46
7047 8070 3.323979 TCAGTTAGTCAGTCCAACCTTCC 59.676 47.826 0.00 0.00 0.00 3.46
7048 8071 2.299297 AGTTAGTCAGTCCAACCTTCCG 59.701 50.000 0.00 0.00 0.00 4.30
7049 8072 2.297698 TAGTCAGTCCAACCTTCCGA 57.702 50.000 0.00 0.00 0.00 4.55
7050 8073 1.645710 AGTCAGTCCAACCTTCCGAT 58.354 50.000 0.00 0.00 0.00 4.18
7051 8074 1.276421 AGTCAGTCCAACCTTCCGATG 59.724 52.381 0.00 0.00 0.00 3.84
7052 8075 1.275291 GTCAGTCCAACCTTCCGATGA 59.725 52.381 0.00 0.00 0.00 2.92
7053 8076 1.275291 TCAGTCCAACCTTCCGATGAC 59.725 52.381 0.00 0.00 0.00 3.06
7054 8077 0.613777 AGTCCAACCTTCCGATGACC 59.386 55.000 0.00 0.00 0.00 4.02
7055 8078 0.323629 GTCCAACCTTCCGATGACCA 59.676 55.000 0.00 0.00 0.00 4.02
7056 8079 1.065418 GTCCAACCTTCCGATGACCAT 60.065 52.381 0.00 0.00 0.00 3.55
7057 8080 1.209504 TCCAACCTTCCGATGACCATC 59.790 52.381 0.04 0.04 34.56 3.51
7058 8081 1.210478 CCAACCTTCCGATGACCATCT 59.790 52.381 8.20 0.00 35.72 2.90
7059 8082 2.283298 CAACCTTCCGATGACCATCTG 58.717 52.381 8.20 2.30 35.72 2.90
7060 8083 0.833287 ACCTTCCGATGACCATCTGG 59.167 55.000 8.20 10.26 42.17 3.86
7061 8084 0.533755 CCTTCCGATGACCATCTGGC 60.534 60.000 8.20 0.00 39.32 4.85
7062 8085 0.178767 CTTCCGATGACCATCTGGCA 59.821 55.000 8.20 0.00 39.32 4.92
7063 8086 0.107703 TTCCGATGACCATCTGGCAC 60.108 55.000 8.20 0.00 39.32 5.01
7064 8087 0.977627 TCCGATGACCATCTGGCACT 60.978 55.000 8.20 0.00 39.32 4.40
7065 8088 0.752658 CCGATGACCATCTGGCACTA 59.247 55.000 8.20 0.00 39.32 2.74
7066 8089 1.269988 CCGATGACCATCTGGCACTAG 60.270 57.143 8.20 0.00 39.32 2.57
7067 8090 1.410517 CGATGACCATCTGGCACTAGT 59.589 52.381 8.20 0.00 39.32 2.57
7068 8091 2.159043 CGATGACCATCTGGCACTAGTT 60.159 50.000 8.20 0.00 39.32 2.24
7069 8092 3.068165 CGATGACCATCTGGCACTAGTTA 59.932 47.826 8.20 0.00 39.32 2.24
7070 8093 4.262207 CGATGACCATCTGGCACTAGTTAT 60.262 45.833 8.20 0.00 39.32 1.89
7071 8094 5.615289 GATGACCATCTGGCACTAGTTATT 58.385 41.667 0.00 0.00 39.32 1.40
7072 8095 6.516693 CGATGACCATCTGGCACTAGTTATTA 60.517 42.308 8.20 0.00 39.32 0.98
7073 8096 6.747414 TGACCATCTGGCACTAGTTATTAT 57.253 37.500 0.00 0.00 39.32 1.28
7074 8097 6.759272 TGACCATCTGGCACTAGTTATTATC 58.241 40.000 0.00 0.00 39.32 1.75
7075 8098 6.554982 TGACCATCTGGCACTAGTTATTATCT 59.445 38.462 0.00 0.00 39.32 1.98
7076 8099 7.728532 TGACCATCTGGCACTAGTTATTATCTA 59.271 37.037 0.00 0.00 39.32 1.98
7077 8100 8.128322 ACCATCTGGCACTAGTTATTATCTAG 57.872 38.462 0.00 7.09 38.73 2.43
7078 8101 7.038659 CCATCTGGCACTAGTTATTATCTAGC 58.961 42.308 0.00 0.00 38.60 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 8.133627 GTCATAATCTCCCACATTTGATCTTTG 58.866 37.037 0.00 0.00 0.00 2.77
563 567 1.720781 AATTGGCCCACTTTTCAGCT 58.279 45.000 0.00 0.00 0.00 4.24
697 711 7.681939 ATGCTCGTTTAAATTTTACAGAGGA 57.318 32.000 0.00 8.31 0.00 3.71
714 728 8.433126 GCGAAATACATTTTACTATATGCTCGT 58.567 33.333 0.00 0.00 0.00 4.18
715 729 8.432359 TGCGAAATACATTTTACTATATGCTCG 58.568 33.333 0.00 0.00 0.00 5.03
717 731 9.878599 GTTGCGAAATACATTTTACTATATGCT 57.121 29.630 0.00 0.00 0.00 3.79
718 732 9.878599 AGTTGCGAAATACATTTTACTATATGC 57.121 29.630 0.00 0.00 0.00 3.14
722 736 8.188139 CCCAAGTTGCGAAATACATTTTACTAT 58.812 33.333 0.00 0.00 0.00 2.12
723 737 7.390996 TCCCAAGTTGCGAAATACATTTTACTA 59.609 33.333 0.00 0.00 0.00 1.82
724 738 6.207810 TCCCAAGTTGCGAAATACATTTTACT 59.792 34.615 0.00 0.00 0.00 2.24
725 739 6.383415 TCCCAAGTTGCGAAATACATTTTAC 58.617 36.000 0.00 0.00 0.00 2.01
726 740 6.349777 CCTCCCAAGTTGCGAAATACATTTTA 60.350 38.462 0.00 0.00 0.00 1.52
727 741 5.461032 TCCCAAGTTGCGAAATACATTTT 57.539 34.783 0.00 0.00 0.00 1.82
728 742 4.082245 CCTCCCAAGTTGCGAAATACATTT 60.082 41.667 0.00 0.00 0.00 2.32
729 743 3.443681 CCTCCCAAGTTGCGAAATACATT 59.556 43.478 0.00 0.00 0.00 2.71
730 744 3.016736 CCTCCCAAGTTGCGAAATACAT 58.983 45.455 0.00 0.00 0.00 2.29
731 745 2.432444 CCTCCCAAGTTGCGAAATACA 58.568 47.619 0.00 0.00 0.00 2.29
732 746 1.743394 CCCTCCCAAGTTGCGAAATAC 59.257 52.381 0.00 0.00 0.00 1.89
733 747 1.340600 CCCCTCCCAAGTTGCGAAATA 60.341 52.381 0.00 0.00 0.00 1.40
734 748 0.611896 CCCCTCCCAAGTTGCGAAAT 60.612 55.000 0.00 0.00 0.00 2.17
735 749 1.228429 CCCCTCCCAAGTTGCGAAA 60.228 57.895 0.00 0.00 0.00 3.46
736 750 2.434331 CCCCTCCCAAGTTGCGAA 59.566 61.111 0.00 0.00 0.00 4.70
737 751 2.852075 ACCCCTCCCAAGTTGCGA 60.852 61.111 0.00 0.00 0.00 5.10
738 752 2.672996 CACCCCTCCCAAGTTGCG 60.673 66.667 0.00 0.00 0.00 4.85
739 753 2.283173 CCACCCCTCCCAAGTTGC 60.283 66.667 0.00 0.00 0.00 4.17
740 754 2.283173 GCCACCCCTCCCAAGTTG 60.283 66.667 0.00 0.00 0.00 3.16
741 755 2.155197 GATGCCACCCCTCCCAAGTT 62.155 60.000 0.00 0.00 0.00 2.66
742 756 2.535317 ATGCCACCCCTCCCAAGT 60.535 61.111 0.00 0.00 0.00 3.16
743 757 2.276740 GATGCCACCCCTCCCAAG 59.723 66.667 0.00 0.00 0.00 3.61
744 758 3.346734 GGATGCCACCCCTCCCAA 61.347 66.667 0.00 0.00 0.00 4.12
745 759 4.692041 TGGATGCCACCCCTCCCA 62.692 66.667 0.00 0.00 0.00 4.37
746 760 3.813724 CTGGATGCCACCCCTCCC 61.814 72.222 0.00 0.00 0.00 4.30
747 761 3.813724 CCTGGATGCCACCCCTCC 61.814 72.222 0.00 0.00 0.00 4.30
748 762 3.813724 CCCTGGATGCCACCCCTC 61.814 72.222 0.00 0.00 0.00 4.30
757 771 4.447342 GTGGGGGTGCCCTGGATG 62.447 72.222 7.26 0.00 44.66 3.51
760 774 4.764771 CATGTGGGGGTGCCCTGG 62.765 72.222 7.26 0.00 44.66 4.45
768 782 3.466791 CTAGCCGAGCATGTGGGGG 62.467 68.421 0.00 0.00 0.00 5.40
769 783 2.109799 CTAGCCGAGCATGTGGGG 59.890 66.667 0.00 0.00 0.00 4.96
770 784 1.068753 CTCTAGCCGAGCATGTGGG 59.931 63.158 0.00 0.00 31.99 4.61
771 785 0.461548 TTCTCTAGCCGAGCATGTGG 59.538 55.000 0.00 0.00 39.70 4.17
772 786 1.850377 CTTCTCTAGCCGAGCATGTG 58.150 55.000 0.00 0.00 39.70 3.21
773 787 0.103937 GCTTCTCTAGCCGAGCATGT 59.896 55.000 0.00 0.00 44.48 3.21
774 788 2.897780 GCTTCTCTAGCCGAGCATG 58.102 57.895 6.28 0.00 44.48 4.06
847 866 1.447489 CTTCTCGTGCTCAGCTGGG 60.447 63.158 15.13 12.70 0.00 4.45
923 942 2.236146 TGAGATCCATGCCACGTAAACT 59.764 45.455 0.00 0.00 0.00 2.66
925 944 2.627945 GTGAGATCCATGCCACGTAAA 58.372 47.619 0.00 0.00 0.00 2.01
928 947 1.153568 CGTGAGATCCATGCCACGT 60.154 57.895 0.00 0.00 44.88 4.49
987 1006 3.948086 GACGACGACGAGTGCCAGG 62.948 68.421 15.32 0.00 42.66 4.45
1019 1038 2.973406 GGGATAGGTTTGTAGAGGAGGG 59.027 54.545 0.00 0.00 0.00 4.30
1062 1081 2.976356 GGTCTAGGGTTTCGCGGT 59.024 61.111 6.13 0.00 0.00 5.68
1402 1424 1.681264 ACGGTTCCTTGCTTTTTCCAG 59.319 47.619 0.00 0.00 0.00 3.86
1410 1432 0.463116 AACAACGACGGTTCCTTGCT 60.463 50.000 0.00 0.00 32.98 3.91
1476 1503 3.624861 GGTTCTGAATCTGCATCAACGAT 59.375 43.478 0.00 0.00 0.00 3.73
1493 1520 4.863131 GTGACATCGAATAAAGTCGGTTCT 59.137 41.667 0.00 0.00 41.43 3.01
1497 1524 3.000322 GCAGTGACATCGAATAAAGTCGG 60.000 47.826 0.00 0.00 41.43 4.79
1608 1635 4.039852 TGGTACAGTCTAACAAGACATGCA 59.960 41.667 8.16 0.00 41.02 3.96
1633 1661 1.808531 ATTGTTGTGCGCTGCATGGT 61.809 50.000 9.73 0.00 41.91 3.55
1660 1688 3.626977 CAGACAATCTAGCAGACTAGCG 58.373 50.000 0.00 0.00 44.83 4.26
1814 1842 0.108041 CCATCTGGCCCACATTTTGC 60.108 55.000 0.00 0.00 0.00 3.68
1929 1957 4.151335 CAGAGACACGAATCAAGGAGTTTG 59.849 45.833 0.00 0.00 38.17 2.93
1963 1991 8.743714 AGAAGATTTAGGCCTTCAAAACATTAG 58.256 33.333 12.58 0.00 40.78 1.73
2006 2034 6.511121 CGAACAATCCCTACAAATCATAACCG 60.511 42.308 0.00 0.00 0.00 4.44
2114 2142 2.107750 ATGCACATCCTCTCGGCG 59.892 61.111 0.00 0.00 0.00 6.46
2235 2263 5.639757 GCACATAAACAATGACATAGCACA 58.360 37.500 0.00 0.00 39.07 4.57
2240 2268 4.954092 TGCGCACATAAACAATGACATA 57.046 36.364 5.66 0.00 39.07 2.29
2367 2395 0.831711 TGTACTCAGGAGCAGGTGCA 60.832 55.000 4.48 0.00 45.16 4.57
2442 2470 9.403583 TGAAAGTAGTGGACAAAGAAGTTAAAT 57.596 29.630 0.00 0.00 0.00 1.40
2445 2473 8.208224 TCATGAAAGTAGTGGACAAAGAAGTTA 58.792 33.333 0.00 0.00 0.00 2.24
2480 2508 7.723616 AGCCCAATTATTATTTTTATTTGGGGC 59.276 33.333 17.07 13.21 43.81 5.80
2571 2599 9.705290 CCAAAAAGGCAAAAACAGTACTATAAT 57.295 29.630 0.00 0.00 0.00 1.28
2574 2617 7.119709 ACCAAAAAGGCAAAAACAGTACTAT 57.880 32.000 0.00 0.00 43.14 2.12
2642 2685 3.498927 ACGGGAACACTCGTACATAAG 57.501 47.619 0.00 0.00 37.88 1.73
2684 2727 6.888105 TCCTGCAGATATCACTGACAAATTA 58.112 36.000 17.39 0.00 39.94 1.40
2690 2733 3.386078 TCCTTCCTGCAGATATCACTGAC 59.614 47.826 17.39 0.00 39.94 3.51
3107 3155 8.992073 ACATTATTCCATTTCAACTTTTCAAGC 58.008 29.630 0.00 0.00 0.00 4.01
3240 3292 5.299028 TCAATGTGTGTGTGAATGCTACTTT 59.701 36.000 0.00 0.00 0.00 2.66
3241 3293 4.821260 TCAATGTGTGTGTGAATGCTACTT 59.179 37.500 0.00 0.00 0.00 2.24
3242 3294 4.388485 TCAATGTGTGTGTGAATGCTACT 58.612 39.130 0.00 0.00 0.00 2.57
3243 3295 4.747540 TCAATGTGTGTGTGAATGCTAC 57.252 40.909 0.00 0.00 0.00 3.58
3244 3296 5.963176 ATTCAATGTGTGTGTGAATGCTA 57.037 34.783 0.00 0.00 39.81 3.49
3245 3297 4.859304 ATTCAATGTGTGTGTGAATGCT 57.141 36.364 0.00 0.00 39.81 3.79
3246 3298 5.224888 AGAATTCAATGTGTGTGTGAATGC 58.775 37.500 8.44 0.00 40.28 3.56
3247 3299 7.329438 GAAGAATTCAATGTGTGTGTGAATG 57.671 36.000 8.44 0.00 46.62 2.67
3335 3388 9.200817 ACATAGGCTTTGTAATTCCAATATGTT 57.799 29.630 8.93 0.00 29.21 2.71
3349 3402 9.469097 TTTACCATTATAACACATAGGCTTTGT 57.531 29.630 4.66 4.66 0.00 2.83
3376 3429 8.297470 AGCATCCACAATCATAACAAATAGTT 57.703 30.769 0.00 0.00 44.27 2.24
3377 3430 7.557358 TGAGCATCCACAATCATAACAAATAGT 59.443 33.333 0.00 0.00 0.00 2.12
3396 3449 5.238214 GTGGACTTGAGGATAAATGAGCATC 59.762 44.000 0.00 0.00 0.00 3.91
3470 3523 4.482990 CCATTCCAGCCTTATAACCCATT 58.517 43.478 0.00 0.00 0.00 3.16
3521 3574 8.627208 AGAAGATAGCAGAAGATGTTTTTGAA 57.373 30.769 0.00 0.00 0.00 2.69
3525 3578 6.315891 GCAGAGAAGATAGCAGAAGATGTTTT 59.684 38.462 0.00 0.00 0.00 2.43
3554 3607 6.144854 CCATGAATACACAAGTTCAACACAG 58.855 40.000 0.00 0.00 37.82 3.66
3606 3672 4.458989 GTGCCATCAAGACCTATTCAACAA 59.541 41.667 0.00 0.00 0.00 2.83
3612 3678 4.225942 TCTTCTGTGCCATCAAGACCTATT 59.774 41.667 0.00 0.00 0.00 1.73
3739 3805 0.389037 TCTGACAGTGACAGCGATGC 60.389 55.000 16.48 0.00 35.61 3.91
3780 3846 9.444600 GTTACCTGAACTGGTTGAAGATTATTA 57.555 33.333 8.53 0.00 41.22 0.98
3793 3859 2.550830 AGCAGTGTTACCTGAACTGG 57.449 50.000 4.39 0.00 41.31 4.00
3846 3912 7.941431 AGTAAAGATGGTACTAGGATATCCG 57.059 40.000 16.21 5.62 42.08 4.18
3871 3937 7.586747 CCCTTAAGCAAAATACGTTAAGTTCA 58.413 34.615 0.00 0.00 32.74 3.18
3931 4001 9.507280 ACAATTCTGCATATGATTTAGTTTTCG 57.493 29.630 6.97 0.00 0.00 3.46
3943 4013 6.127814 ACTCCAGTTCAACAATTCTGCATATG 60.128 38.462 0.00 0.00 0.00 1.78
3950 4020 8.986991 AGATATCTACTCCAGTTCAACAATTCT 58.013 33.333 2.53 0.00 0.00 2.40
3959 4029 9.823647 TTGAAATCAAGATATCTACTCCAGTTC 57.176 33.333 5.46 4.53 0.00 3.01
4227 4297 7.071196 TGGTGCTATATCTTAAGGAACAGTCAT 59.929 37.037 1.85 0.00 0.00 3.06
4391 4461 7.851822 AAGTTACAAACGACATGCATAAAAG 57.148 32.000 0.00 0.00 36.23 2.27
4431 4501 1.616994 GCCCTGGTCCAAATAGCAACT 60.617 52.381 0.00 0.00 0.00 3.16
4432 4502 0.817654 GCCCTGGTCCAAATAGCAAC 59.182 55.000 0.00 0.00 0.00 4.17
4531 4601 7.556275 TGACAAATAATACCTGGAAGCCTTTAG 59.444 37.037 0.00 0.00 0.00 1.85
4707 4777 0.767998 GGGATCCTGGAGATTGGGAC 59.232 60.000 12.58 0.00 34.42 4.46
4824 4906 5.105392 ACACAAATGGAAGCTTTTCTCACAA 60.105 36.000 0.00 0.00 0.00 3.33
4825 4907 4.402155 ACACAAATGGAAGCTTTTCTCACA 59.598 37.500 0.00 0.00 0.00 3.58
4830 4912 4.151157 GCATCACACAAATGGAAGCTTTTC 59.849 41.667 0.00 0.00 0.00 2.29
4848 4930 1.069973 CGTTTGCTTCTTCGTGCATCA 60.070 47.619 0.00 0.00 39.07 3.07
4920 5002 7.373441 GGTCTACGAATCTTAATGAAAAATGCG 59.627 37.037 0.00 0.00 0.00 4.73
4945 5027 7.532546 CACATACATGTTAAAACGTACAGTTGG 59.467 37.037 2.30 0.00 39.73 3.77
4947 5029 8.065407 CACACATACATGTTAAAACGTACAGTT 58.935 33.333 2.30 0.00 41.41 3.16
4950 5032 6.704937 TCCACACATACATGTTAAAACGTACA 59.295 34.615 2.30 0.00 39.39 2.90
4969 5051 8.040716 ACAAGCTACAAATAGTATTTCCACAC 57.959 34.615 5.10 0.00 30.93 3.82
4986 5068 5.757886 TCACAAAGTGCATTTACAAGCTAC 58.242 37.500 0.00 0.00 32.98 3.58
5012 5094 9.480053 AACCACAGTGATCATTTATTTTGAAAG 57.520 29.630 0.62 0.00 0.00 2.62
5034 5116 2.823154 CGGATTTTTGGCTCCTAAACCA 59.177 45.455 0.00 0.00 0.00 3.67
5071 5153 5.160641 ACGATTAACAAAACATGGATGTGC 58.839 37.500 0.00 0.00 41.61 4.57
5072 5154 8.909708 AATACGATTAACAAAACATGGATGTG 57.090 30.769 0.00 0.00 41.61 3.21
5109 5191 7.962964 TGATATTCATTCATAACGGAAGGTC 57.037 36.000 0.00 0.00 31.01 3.85
5126 5214 6.555315 AGAAAAATGTCCGCTGTTGATATTC 58.445 36.000 0.00 0.00 0.00 1.75
5127 5215 6.515272 AGAAAAATGTCCGCTGTTGATATT 57.485 33.333 0.00 0.00 0.00 1.28
5128 5216 6.071952 ACAAGAAAAATGTCCGCTGTTGATAT 60.072 34.615 0.00 0.00 0.00 1.63
5129 5217 5.240623 ACAAGAAAAATGTCCGCTGTTGATA 59.759 36.000 0.00 0.00 0.00 2.15
5130 5218 4.037923 ACAAGAAAAATGTCCGCTGTTGAT 59.962 37.500 0.00 0.00 0.00 2.57
5131 5219 3.380004 ACAAGAAAAATGTCCGCTGTTGA 59.620 39.130 0.00 0.00 0.00 3.18
5132 5220 3.705604 ACAAGAAAAATGTCCGCTGTTG 58.294 40.909 0.00 0.00 0.00 3.33
5261 5349 8.460831 AAGTGTTAAACAGAATTTGACAACAC 57.539 30.769 6.22 6.22 41.28 3.32
5299 5387 3.674997 CTCCTCGACCTTCCAAAATCAA 58.325 45.455 0.00 0.00 0.00 2.57
5301 5389 2.010497 GCTCCTCGACCTTCCAAAATC 58.990 52.381 0.00 0.00 0.00 2.17
5302 5390 1.676014 CGCTCCTCGACCTTCCAAAAT 60.676 52.381 0.00 0.00 41.67 1.82
5347 5435 0.317160 AGAACACTTCGTCGGCATCA 59.683 50.000 0.00 0.00 34.02 3.07
5386 5474 2.646175 GCTGCCTACGGGAGACACA 61.646 63.158 5.54 0.00 44.17 3.72
5401 5489 6.322201 ACCTTTTCCCTTGATATGTAATGCTG 59.678 38.462 0.00 0.00 0.00 4.41
5759 5847 0.622665 AATCCAGGCAGAGAACAGGG 59.377 55.000 0.00 0.00 0.00 4.45
5761 5849 4.761739 TGTTTTAATCCAGGCAGAGAACAG 59.238 41.667 0.00 0.00 0.00 3.16
5769 5857 5.069383 CCATCATCATGTTTTAATCCAGGCA 59.931 40.000 0.00 0.00 0.00 4.75
5774 5862 6.295462 CCCCATCCATCATCATGTTTTAATCC 60.295 42.308 0.00 0.00 0.00 3.01
5777 5865 5.527385 ACCCCATCCATCATCATGTTTTAA 58.473 37.500 0.00 0.00 0.00 1.52
5790 5881 0.324645 GACCTTGCAACCCCATCCAT 60.325 55.000 0.00 0.00 0.00 3.41
5791 5882 1.076549 GACCTTGCAACCCCATCCA 59.923 57.895 0.00 0.00 0.00 3.41
5792 5883 0.251787 AAGACCTTGCAACCCCATCC 60.252 55.000 0.00 0.00 0.00 3.51
5892 5987 1.464376 GCGCATACCAGGAGAGGCTA 61.464 60.000 0.30 0.00 0.00 3.93
5933 6028 2.413837 CTACGGTTTCCAGTTCCACAG 58.586 52.381 0.00 0.00 0.00 3.66
5994 6089 2.422597 CCGACATGGCAAGTACAAGAA 58.577 47.619 0.00 0.00 0.00 2.52
5995 6090 1.338674 CCCGACATGGCAAGTACAAGA 60.339 52.381 0.00 0.00 35.87 3.02
5999 6094 0.321298 ACACCCGACATGGCAAGTAC 60.321 55.000 0.00 0.00 35.87 2.73
6010 6106 2.032924 CAGAAAAACCAAGACACCCGAC 59.967 50.000 0.00 0.00 0.00 4.79
6029 6125 5.491070 TCTTATCATCACAAACCACTCCAG 58.509 41.667 0.00 0.00 0.00 3.86
6031 6127 8.506168 TTATTCTTATCATCACAAACCACTCC 57.494 34.615 0.00 0.00 0.00 3.85
6033 6129 9.739276 TTCTTATTCTTATCATCACAAACCACT 57.261 29.630 0.00 0.00 0.00 4.00
6051 6161 6.458888 GGCACACCAAGCTCTTATTCTTATTC 60.459 42.308 0.00 0.00 35.26 1.75
6096 6213 4.076394 AGCACTTTTATTACGGCAAGGAA 58.924 39.130 0.00 0.00 0.00 3.36
6115 6232 0.034896 GTCGGGTTTCTCCTTGAGCA 59.965 55.000 0.00 0.00 36.25 4.26
6130 6247 1.470098 CTTGGCTTTCATCAAGGTCGG 59.530 52.381 0.00 0.00 37.35 4.79
6165 6283 1.176527 TAAAGAGTGCCAGCCATTGC 58.823 50.000 0.00 0.00 37.95 3.56
6182 6302 4.217767 AGCTATATGAACGAGCGGTGATAA 59.782 41.667 0.00 0.00 41.23 1.75
6183 6303 3.756963 AGCTATATGAACGAGCGGTGATA 59.243 43.478 0.00 0.00 41.23 2.15
6189 6309 2.162608 AGCCTAGCTATATGAACGAGCG 59.837 50.000 0.00 0.00 41.23 5.03
6192 6312 4.023107 GTGACAGCCTAGCTATATGAACGA 60.023 45.833 0.00 0.00 36.40 3.85
6258 6378 1.534163 CACGAACTGTGGACTCGTAGA 59.466 52.381 5.09 0.00 43.55 2.59
6322 6446 4.270325 GGTATCGATGCAAACAACTACTCC 59.730 45.833 15.61 0.00 0.00 3.85
6375 6914 2.286872 ACGTAGTACTCCCGTGATGAG 58.713 52.381 16.90 0.00 41.94 2.90
6388 6927 2.030823 CGATTCGGTAGTGCACGTAGTA 59.969 50.000 12.01 0.00 41.61 1.82
6390 6929 1.063027 TCGATTCGGTAGTGCACGTAG 59.937 52.381 12.01 4.78 0.00 3.51
6391 6930 1.085893 TCGATTCGGTAGTGCACGTA 58.914 50.000 12.01 1.42 0.00 3.57
6392 6931 0.455633 GTCGATTCGGTAGTGCACGT 60.456 55.000 12.01 2.47 0.00 4.49
6393 6932 0.455464 TGTCGATTCGGTAGTGCACG 60.455 55.000 12.01 0.00 0.00 5.34
6394 6933 1.269166 CTGTCGATTCGGTAGTGCAC 58.731 55.000 9.40 9.40 0.00 4.57
6395 6934 0.457853 GCTGTCGATTCGGTAGTGCA 60.458 55.000 6.18 0.00 0.00 4.57
6398 6937 2.474561 TCGCTGTCGATTCGGTAGT 58.525 52.632 6.18 0.00 40.21 2.73
6436 7025 1.652619 GTAGTAGGACAAGCGCGTTTC 59.347 52.381 4.81 0.07 0.00 2.78
6504 7093 0.533308 TTGGTGTTAAGCCGAGCGTT 60.533 50.000 0.00 0.00 0.00 4.84
6671 7578 0.366871 GAACGCAGACGCACATACAG 59.633 55.000 0.00 0.00 45.53 2.74
6672 7579 1.011968 GGAACGCAGACGCACATACA 61.012 55.000 0.00 0.00 45.53 2.29
6673 7580 1.011968 TGGAACGCAGACGCACATAC 61.012 55.000 0.00 0.00 45.53 2.39
6674 7581 0.319986 TTGGAACGCAGACGCACATA 60.320 50.000 0.00 0.00 45.53 2.29
6675 7582 1.568612 CTTGGAACGCAGACGCACAT 61.569 55.000 0.00 0.00 45.53 3.21
6712 7620 3.935818 TCGGACTCACCTATCTCTTCT 57.064 47.619 0.00 0.00 36.31 2.85
6737 7747 2.024176 TCAGCCCTTTATTGAGTCGC 57.976 50.000 0.00 0.00 0.00 5.19
6739 7749 6.122964 ACCTATTTCAGCCCTTTATTGAGTC 58.877 40.000 0.00 0.00 0.00 3.36
6741 7751 6.681368 GCAACCTATTTCAGCCCTTTATTGAG 60.681 42.308 0.00 0.00 0.00 3.02
6743 7753 5.351458 GCAACCTATTTCAGCCCTTTATTG 58.649 41.667 0.00 0.00 0.00 1.90
6813 7824 1.250840 TACAGCTGAGCCGCTTGAGA 61.251 55.000 23.35 0.00 38.41 3.27
6814 7825 1.080995 GTACAGCTGAGCCGCTTGAG 61.081 60.000 23.35 0.00 38.41 3.02
6815 7826 1.079819 GTACAGCTGAGCCGCTTGA 60.080 57.895 23.35 0.00 38.41 3.02
6816 7827 2.103042 GGTACAGCTGAGCCGCTTG 61.103 63.158 23.35 0.00 38.41 4.01
6817 7828 2.266055 GGTACAGCTGAGCCGCTT 59.734 61.111 23.35 0.00 38.41 4.68
6871 7882 2.237392 GCATTGGCCTAGGTAGGATAGG 59.763 54.545 11.31 0.00 46.63 2.57
6872 7883 3.618690 GCATTGGCCTAGGTAGGATAG 57.381 52.381 11.31 0.00 46.63 2.08
6926 7938 3.891422 TTGGGCTTCCATTATGCAAAG 57.109 42.857 0.00 0.00 40.80 2.77
6960 7976 6.873997 TGCAGCGGCTATATAATAATGTACT 58.126 36.000 10.92 0.00 41.91 2.73
6961 7977 7.534085 TTGCAGCGGCTATATAATAATGTAC 57.466 36.000 10.92 0.00 41.91 2.90
6962 7978 8.554835 TTTTGCAGCGGCTATATAATAATGTA 57.445 30.769 10.92 0.00 41.91 2.29
6963 7979 7.447374 TTTTGCAGCGGCTATATAATAATGT 57.553 32.000 10.92 0.00 41.91 2.71
6972 7995 4.094294 CAGTAACTTTTTGCAGCGGCTATA 59.906 41.667 10.92 0.00 41.91 1.31
6977 8000 2.350772 CCTCAGTAACTTTTTGCAGCGG 60.351 50.000 0.00 0.00 0.00 5.52
6980 8003 4.515191 TGTAGCCTCAGTAACTTTTTGCAG 59.485 41.667 0.00 0.00 0.00 4.41
6990 8013 6.605471 TCAGAGAAAATGTAGCCTCAGTAA 57.395 37.500 0.00 0.00 0.00 2.24
6996 8019 7.503902 GGGATTTATTCAGAGAAAATGTAGCCT 59.496 37.037 0.00 0.00 0.00 4.58
6997 8020 7.255625 GGGGATTTATTCAGAGAAAATGTAGCC 60.256 40.741 0.00 0.00 0.00 3.93
6998 8021 7.285401 TGGGGATTTATTCAGAGAAAATGTAGC 59.715 37.037 0.00 0.00 0.00 3.58
6999 8022 8.752005 TGGGGATTTATTCAGAGAAAATGTAG 57.248 34.615 0.00 0.00 0.00 2.74
7000 8023 9.354673 GATGGGGATTTATTCAGAGAAAATGTA 57.645 33.333 0.00 0.00 0.00 2.29
7001 8024 7.840716 TGATGGGGATTTATTCAGAGAAAATGT 59.159 33.333 0.00 0.00 0.00 2.71
7002 8025 8.241497 TGATGGGGATTTATTCAGAGAAAATG 57.759 34.615 0.00 0.00 0.00 2.32
7003 8026 8.063770 ACTGATGGGGATTTATTCAGAGAAAAT 58.936 33.333 5.33 0.00 0.00 1.82
7004 8027 7.413446 ACTGATGGGGATTTATTCAGAGAAAA 58.587 34.615 5.33 0.00 0.00 2.29
7005 8028 6.973642 ACTGATGGGGATTTATTCAGAGAAA 58.026 36.000 5.33 0.00 0.00 2.52
7006 8029 6.581388 ACTGATGGGGATTTATTCAGAGAA 57.419 37.500 5.33 0.00 0.00 2.87
7007 8030 6.581388 AACTGATGGGGATTTATTCAGAGA 57.419 37.500 5.33 0.00 0.00 3.10
7008 8031 7.512992 ACTAACTGATGGGGATTTATTCAGAG 58.487 38.462 5.33 0.00 0.00 3.35
7009 8032 7.127186 TGACTAACTGATGGGGATTTATTCAGA 59.873 37.037 5.33 0.00 0.00 3.27
7010 8033 7.282585 TGACTAACTGATGGGGATTTATTCAG 58.717 38.462 0.00 0.00 0.00 3.02
7011 8034 7.092444 ACTGACTAACTGATGGGGATTTATTCA 60.092 37.037 0.00 0.00 0.00 2.57
7012 8035 7.283329 ACTGACTAACTGATGGGGATTTATTC 58.717 38.462 0.00 0.00 0.00 1.75
7013 8036 7.213178 ACTGACTAACTGATGGGGATTTATT 57.787 36.000 0.00 0.00 0.00 1.40
7014 8037 6.183361 GGACTGACTAACTGATGGGGATTTAT 60.183 42.308 0.00 0.00 0.00 1.40
7015 8038 5.130477 GGACTGACTAACTGATGGGGATTTA 59.870 44.000 0.00 0.00 0.00 1.40
7016 8039 4.080299 GGACTGACTAACTGATGGGGATTT 60.080 45.833 0.00 0.00 0.00 2.17
7017 8040 3.456277 GGACTGACTAACTGATGGGGATT 59.544 47.826 0.00 0.00 0.00 3.01
7018 8041 3.041946 GGACTGACTAACTGATGGGGAT 58.958 50.000 0.00 0.00 0.00 3.85
7019 8042 2.225522 TGGACTGACTAACTGATGGGGA 60.226 50.000 0.00 0.00 0.00 4.81
7020 8043 2.187958 TGGACTGACTAACTGATGGGG 58.812 52.381 0.00 0.00 0.00 4.96
7021 8044 3.600388 GTTGGACTGACTAACTGATGGG 58.400 50.000 0.00 0.00 37.08 4.00
7022 8045 3.261897 AGGTTGGACTGACTAACTGATGG 59.738 47.826 6.37 0.00 39.42 3.51
7023 8046 4.543590 AGGTTGGACTGACTAACTGATG 57.456 45.455 6.37 0.00 39.42 3.07
7024 8047 4.020128 GGAAGGTTGGACTGACTAACTGAT 60.020 45.833 6.37 0.00 39.42 2.90
7025 8048 3.323979 GGAAGGTTGGACTGACTAACTGA 59.676 47.826 6.37 0.00 39.42 3.41
7026 8049 3.665190 GGAAGGTTGGACTGACTAACTG 58.335 50.000 6.37 0.00 39.42 3.16
7027 8050 2.299297 CGGAAGGTTGGACTGACTAACT 59.701 50.000 6.37 0.00 39.42 2.24
7028 8051 2.298163 TCGGAAGGTTGGACTGACTAAC 59.702 50.000 0.00 0.00 38.88 2.34
7029 8052 2.600790 TCGGAAGGTTGGACTGACTAA 58.399 47.619 0.00 0.00 0.00 2.24
7030 8053 2.297698 TCGGAAGGTTGGACTGACTA 57.702 50.000 0.00 0.00 0.00 2.59
7031 8054 1.276421 CATCGGAAGGTTGGACTGACT 59.724 52.381 0.00 0.00 0.00 3.41
7032 8055 1.275291 TCATCGGAAGGTTGGACTGAC 59.725 52.381 0.00 0.00 0.00 3.51
7033 8056 1.275291 GTCATCGGAAGGTTGGACTGA 59.725 52.381 0.00 0.00 0.00 3.41
7034 8057 1.676014 GGTCATCGGAAGGTTGGACTG 60.676 57.143 0.00 0.00 0.00 3.51
7035 8058 0.613777 GGTCATCGGAAGGTTGGACT 59.386 55.000 0.00 0.00 0.00 3.85
7036 8059 0.323629 TGGTCATCGGAAGGTTGGAC 59.676 55.000 0.00 0.00 0.00 4.02
7037 8060 1.209504 GATGGTCATCGGAAGGTTGGA 59.790 52.381 0.00 0.00 0.00 3.53
7038 8061 1.210478 AGATGGTCATCGGAAGGTTGG 59.790 52.381 5.43 0.00 42.48 3.77
7039 8062 2.283298 CAGATGGTCATCGGAAGGTTG 58.717 52.381 5.38 0.00 42.48 3.77
7040 8063 1.210478 CCAGATGGTCATCGGAAGGTT 59.790 52.381 11.61 0.00 42.48 3.50
7041 8064 0.833287 CCAGATGGTCATCGGAAGGT 59.167 55.000 11.61 0.00 42.48 3.50
7042 8065 0.533755 GCCAGATGGTCATCGGAAGG 60.534 60.000 18.70 13.88 42.48 3.46
7043 8066 0.178767 TGCCAGATGGTCATCGGAAG 59.821 55.000 18.70 6.95 42.48 3.46
7044 8067 0.107703 GTGCCAGATGGTCATCGGAA 60.108 55.000 18.70 10.41 42.48 4.30
7045 8068 0.977627 AGTGCCAGATGGTCATCGGA 60.978 55.000 18.70 2.41 42.48 4.55
7046 8069 0.752658 TAGTGCCAGATGGTCATCGG 59.247 55.000 13.52 13.52 42.48 4.18
7047 8070 1.410517 ACTAGTGCCAGATGGTCATCG 59.589 52.381 0.00 1.76 42.48 3.84
7048 8071 3.550437 AACTAGTGCCAGATGGTCATC 57.450 47.619 0.00 2.92 37.57 2.92
7049 8072 5.636903 AATAACTAGTGCCAGATGGTCAT 57.363 39.130 0.00 0.00 37.57 3.06
7050 8073 6.554982 AGATAATAACTAGTGCCAGATGGTCA 59.445 38.462 0.00 0.00 37.57 4.02
7051 8074 6.998802 AGATAATAACTAGTGCCAGATGGTC 58.001 40.000 0.00 0.00 37.57 4.02
7052 8075 7.310113 GCTAGATAATAACTAGTGCCAGATGGT 60.310 40.741 0.00 0.00 39.36 3.55
7053 8076 7.038659 GCTAGATAATAACTAGTGCCAGATGG 58.961 42.308 0.00 0.00 39.36 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.