Multiple sequence alignment - TraesCS1D01G210300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G210300 chr1D 100.000 2621 0 0 1 2621 296358245 296360865 0.000000e+00 4841
1 TraesCS1D01G210300 chr1D 94.624 372 20 0 1 372 296294034 296294405 6.290000e-161 577
2 TraesCS1D01G210300 chr1D 93.817 372 23 0 1 372 379998264 379997893 6.330000e-156 560
3 TraesCS1D01G210300 chr1A 96.667 930 25 2 782 1710 369082958 369083882 0.000000e+00 1541
4 TraesCS1D01G210300 chr1A 89.741 926 59 13 1724 2621 369083946 369084863 0.000000e+00 1151
5 TraesCS1D01G210300 chr1B 89.369 1251 60 17 770 1988 397813554 397814763 0.000000e+00 1506
6 TraesCS1D01G210300 chr1B 92.259 633 37 5 1992 2619 397814868 397815493 0.000000e+00 887
7 TraesCS1D01G210300 chr5B 94.370 373 19 2 1 372 607495999 607495628 2.930000e-159 571
8 TraesCS1D01G210300 chr6B 94.102 373 20 2 1 372 701674584 701674213 1.360000e-157 566
9 TraesCS1D01G210300 chr5D 93.617 376 22 1 1 374 522165441 522165066 6.330000e-156 560
10 TraesCS1D01G210300 chr5A 93.834 373 22 1 1 372 38657016 38656644 6.330000e-156 560
11 TraesCS1D01G210300 chr3B 93.817 372 23 0 1 372 366130985 366131356 6.330000e-156 560
12 TraesCS1D01G210300 chr2D 93.817 372 23 0 1 372 311578418 311578789 6.330000e-156 560
13 TraesCS1D01G210300 chr6D 92.268 388 28 2 1 388 460998532 460998917 1.370000e-152 549


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G210300 chr1D 296358245 296360865 2620 False 4841.0 4841 100.000 1 2621 1 chr1D.!!$F2 2620
1 TraesCS1D01G210300 chr1A 369082958 369084863 1905 False 1346.0 1541 93.204 782 2621 2 chr1A.!!$F1 1839
2 TraesCS1D01G210300 chr1B 397813554 397815493 1939 False 1196.5 1506 90.814 770 2619 2 chr1B.!!$F1 1849

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
758 759 0.035458 GGCGGAGATAGGTGGGAATG 59.965 60.0 0.0 0.0 0.0 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2021 2204 1.579429 CAACTAAGGTGGCCGTTGC 59.421 57.895 6.08 0.0 31.62 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.500509 CTCTGGTATCCGAGAGTTGC 57.499 55.000 0.00 0.00 32.51 4.17
20 21 1.751351 CTCTGGTATCCGAGAGTTGCA 59.249 52.381 0.00 0.00 32.51 4.08
21 22 2.363680 CTCTGGTATCCGAGAGTTGCAT 59.636 50.000 0.00 0.00 32.51 3.96
22 23 2.101415 TCTGGTATCCGAGAGTTGCATG 59.899 50.000 0.00 0.00 0.00 4.06
23 24 2.101415 CTGGTATCCGAGAGTTGCATGA 59.899 50.000 0.00 0.00 0.00 3.07
24 25 2.700371 TGGTATCCGAGAGTTGCATGAT 59.300 45.455 0.00 0.00 0.00 2.45
25 26 3.243873 TGGTATCCGAGAGTTGCATGATC 60.244 47.826 0.00 0.00 0.00 2.92
26 27 3.006323 GGTATCCGAGAGTTGCATGATCT 59.994 47.826 0.00 0.00 0.00 2.75
27 28 2.879002 TCCGAGAGTTGCATGATCTC 57.121 50.000 11.43 11.43 36.85 2.75
28 29 2.102578 TCCGAGAGTTGCATGATCTCA 58.897 47.619 18.13 3.07 39.56 3.27
29 30 2.697229 TCCGAGAGTTGCATGATCTCAT 59.303 45.455 18.13 0.00 39.56 2.90
41 42 1.410517 TGATCTCATGGTCGAAGGAGC 59.589 52.381 0.00 0.00 41.07 4.70
49 50 3.627395 TGGTCGAAGGAGCATGTATTT 57.373 42.857 0.00 0.00 45.17 1.40
50 51 3.270027 TGGTCGAAGGAGCATGTATTTG 58.730 45.455 0.00 0.00 45.17 2.32
51 52 3.055458 TGGTCGAAGGAGCATGTATTTGA 60.055 43.478 0.00 0.00 45.17 2.69
52 53 3.309954 GGTCGAAGGAGCATGTATTTGAC 59.690 47.826 0.00 4.24 40.40 3.18
53 54 3.932710 GTCGAAGGAGCATGTATTTGACA 59.067 43.478 12.75 0.00 43.97 3.58
82 83 4.657075 AACGGTAGCAATAAACTGAACG 57.343 40.909 0.00 0.00 0.00 3.95
83 84 3.916761 ACGGTAGCAATAAACTGAACGA 58.083 40.909 0.00 0.00 0.00 3.85
84 85 4.501071 ACGGTAGCAATAAACTGAACGAT 58.499 39.130 0.00 0.00 0.00 3.73
85 86 4.565564 ACGGTAGCAATAAACTGAACGATC 59.434 41.667 0.00 0.00 0.00 3.69
86 87 4.565166 CGGTAGCAATAAACTGAACGATCA 59.435 41.667 0.00 0.00 0.00 2.92
87 88 5.234329 CGGTAGCAATAAACTGAACGATCAT 59.766 40.000 0.00 0.00 34.37 2.45
88 89 6.419710 CGGTAGCAATAAACTGAACGATCATA 59.580 38.462 0.00 0.00 34.37 2.15
89 90 7.116376 CGGTAGCAATAAACTGAACGATCATAT 59.884 37.037 0.00 0.00 34.37 1.78
90 91 8.223769 GGTAGCAATAAACTGAACGATCATATG 58.776 37.037 0.00 0.00 34.37 1.78
91 92 7.792374 AGCAATAAACTGAACGATCATATGT 57.208 32.000 1.90 0.00 34.37 2.29
92 93 8.213518 AGCAATAAACTGAACGATCATATGTT 57.786 30.769 1.90 0.00 34.37 2.71
93 94 9.325198 AGCAATAAACTGAACGATCATATGTTA 57.675 29.630 1.90 0.00 34.37 2.41
94 95 9.929722 GCAATAAACTGAACGATCATATGTTAA 57.070 29.630 1.90 0.00 34.37 2.01
97 98 7.849804 AAACTGAACGATCATATGTTAAGCT 57.150 32.000 1.90 0.00 34.37 3.74
98 99 8.942338 AAACTGAACGATCATATGTTAAGCTA 57.058 30.769 1.90 0.00 34.37 3.32
99 100 8.942338 AACTGAACGATCATATGTTAAGCTAA 57.058 30.769 1.90 0.00 34.37 3.09
100 101 8.354011 ACTGAACGATCATATGTTAAGCTAAC 57.646 34.615 1.90 0.00 35.66 2.34
101 102 7.979537 ACTGAACGATCATATGTTAAGCTAACA 59.020 33.333 1.90 10.01 42.74 2.41
102 103 8.483218 CTGAACGATCATATGTTAAGCTAACAG 58.517 37.037 1.90 0.00 42.28 3.16
113 114 7.241042 TGTTAAGCTAACAGATAGGTCTTGT 57.759 36.000 0.00 0.00 43.23 3.16
114 115 7.321153 TGTTAAGCTAACAGATAGGTCTTGTC 58.679 38.462 0.00 0.00 43.23 3.18
115 116 5.346181 AAGCTAACAGATAGGTCTTGTCC 57.654 43.478 0.00 0.00 41.42 4.02
116 117 4.353777 AGCTAACAGATAGGTCTTGTCCA 58.646 43.478 0.00 0.00 37.85 4.02
117 118 4.965532 AGCTAACAGATAGGTCTTGTCCAT 59.034 41.667 0.00 0.00 37.85 3.41
118 119 5.069781 AGCTAACAGATAGGTCTTGTCCATC 59.930 44.000 0.00 0.00 37.85 3.51
119 120 5.163405 GCTAACAGATAGGTCTTGTCCATCA 60.163 44.000 0.00 0.00 30.42 3.07
120 121 4.744795 ACAGATAGGTCTTGTCCATCAC 57.255 45.455 0.00 0.00 30.42 3.06
121 122 4.096681 ACAGATAGGTCTTGTCCATCACA 58.903 43.478 0.00 0.00 30.42 3.58
122 123 4.718774 ACAGATAGGTCTTGTCCATCACAT 59.281 41.667 0.00 0.00 33.90 3.21
123 124 5.163364 ACAGATAGGTCTTGTCCATCACATC 60.163 44.000 0.00 0.00 33.90 3.06
124 125 4.964897 AGATAGGTCTTGTCCATCACATCA 59.035 41.667 0.00 0.00 33.90 3.07
125 126 5.605908 AGATAGGTCTTGTCCATCACATCAT 59.394 40.000 0.00 0.00 33.90 2.45
126 127 4.581309 AGGTCTTGTCCATCACATCATT 57.419 40.909 0.00 0.00 33.90 2.57
127 128 4.521146 AGGTCTTGTCCATCACATCATTC 58.479 43.478 0.00 0.00 33.90 2.67
128 129 4.226846 AGGTCTTGTCCATCACATCATTCT 59.773 41.667 0.00 0.00 33.90 2.40
129 130 4.574013 GGTCTTGTCCATCACATCATTCTC 59.426 45.833 0.00 0.00 33.90 2.87
130 131 4.574013 GTCTTGTCCATCACATCATTCTCC 59.426 45.833 0.00 0.00 33.90 3.71
131 132 4.472470 TCTTGTCCATCACATCATTCTCCT 59.528 41.667 0.00 0.00 33.90 3.69
132 133 5.662657 TCTTGTCCATCACATCATTCTCCTA 59.337 40.000 0.00 0.00 33.90 2.94
133 134 5.955961 TGTCCATCACATCATTCTCCTAA 57.044 39.130 0.00 0.00 0.00 2.69
134 135 6.505048 TGTCCATCACATCATTCTCCTAAT 57.495 37.500 0.00 0.00 0.00 1.73
135 136 6.293698 TGTCCATCACATCATTCTCCTAATG 58.706 40.000 0.00 0.00 0.00 1.90
136 137 6.100134 TGTCCATCACATCATTCTCCTAATGA 59.900 38.462 3.13 3.13 40.50 2.57
137 138 7.166851 GTCCATCACATCATTCTCCTAATGAT 58.833 38.462 7.28 7.28 45.40 2.45
145 146 6.119240 TCATTCTCCTAATGATGTGATCCC 57.881 41.667 0.00 0.00 32.21 3.85
146 147 4.607293 TTCTCCTAATGATGTGATCCCG 57.393 45.455 0.00 0.00 0.00 5.14
147 148 3.576861 TCTCCTAATGATGTGATCCCGT 58.423 45.455 0.00 0.00 0.00 5.28
148 149 3.967326 TCTCCTAATGATGTGATCCCGTT 59.033 43.478 0.00 0.00 0.00 4.44
149 150 5.144832 TCTCCTAATGATGTGATCCCGTTA 58.855 41.667 0.00 0.00 0.00 3.18
150 151 5.780282 TCTCCTAATGATGTGATCCCGTTAT 59.220 40.000 0.00 0.00 0.00 1.89
151 152 6.037786 TCCTAATGATGTGATCCCGTTATC 57.962 41.667 0.00 0.00 0.00 1.75
152 153 5.542251 TCCTAATGATGTGATCCCGTTATCA 59.458 40.000 0.00 0.00 33.48 2.15
153 154 6.042666 TCCTAATGATGTGATCCCGTTATCAA 59.957 38.462 0.00 0.00 37.61 2.57
154 155 6.710295 CCTAATGATGTGATCCCGTTATCAAA 59.290 38.462 0.00 0.00 37.61 2.69
155 156 7.391554 CCTAATGATGTGATCCCGTTATCAAAT 59.608 37.037 0.70 0.70 36.67 2.32
156 157 6.564709 ATGATGTGATCCCGTTATCAAATG 57.435 37.500 4.98 0.00 34.56 2.32
157 158 4.821260 TGATGTGATCCCGTTATCAAATGG 59.179 41.667 4.98 0.00 40.91 3.16
158 159 2.948979 TGTGATCCCGTTATCAAATGGC 59.051 45.455 0.00 0.00 40.04 4.40
159 160 2.948979 GTGATCCCGTTATCAAATGGCA 59.051 45.455 0.00 0.00 40.04 4.92
160 161 3.380004 GTGATCCCGTTATCAAATGGCAA 59.620 43.478 0.00 0.00 40.04 4.52
161 162 3.380004 TGATCCCGTTATCAAATGGCAAC 59.620 43.478 0.00 0.00 40.04 4.17
162 163 3.080300 TCCCGTTATCAAATGGCAACT 57.920 42.857 0.00 0.00 40.04 3.16
163 164 3.013921 TCCCGTTATCAAATGGCAACTC 58.986 45.455 0.00 0.00 40.04 3.01
164 165 2.752354 CCCGTTATCAAATGGCAACTCA 59.248 45.455 0.00 0.00 40.04 3.41
165 166 3.381272 CCCGTTATCAAATGGCAACTCAT 59.619 43.478 0.00 0.00 40.04 2.90
166 167 4.353737 CCGTTATCAAATGGCAACTCATG 58.646 43.478 0.00 0.00 35.01 3.07
167 168 4.142403 CCGTTATCAAATGGCAACTCATGT 60.142 41.667 0.00 0.00 35.01 3.21
168 169 5.030295 CGTTATCAAATGGCAACTCATGTC 58.970 41.667 0.00 0.00 37.61 3.06
169 170 5.163723 CGTTATCAAATGGCAACTCATGTCT 60.164 40.000 0.00 0.00 33.68 3.41
170 171 6.037062 CGTTATCAAATGGCAACTCATGTCTA 59.963 38.462 0.00 0.00 33.68 2.59
171 172 7.254898 CGTTATCAAATGGCAACTCATGTCTAT 60.255 37.037 0.00 0.00 33.68 1.98
172 173 5.823209 TCAAATGGCAACTCATGTCTATG 57.177 39.130 0.00 0.00 33.68 2.23
173 174 4.641541 TCAAATGGCAACTCATGTCTATGG 59.358 41.667 0.00 0.00 33.68 2.74
174 175 3.939740 ATGGCAACTCATGTCTATGGT 57.060 42.857 0.00 0.00 33.68 3.55
175 176 3.719268 TGGCAACTCATGTCTATGGTT 57.281 42.857 0.00 0.00 33.68 3.67
176 177 4.835284 TGGCAACTCATGTCTATGGTTA 57.165 40.909 0.00 0.00 33.68 2.85
177 178 4.769688 TGGCAACTCATGTCTATGGTTAG 58.230 43.478 0.00 0.00 33.68 2.34
178 179 4.130118 GGCAACTCATGTCTATGGTTAGG 58.870 47.826 0.00 0.00 34.97 2.69
179 180 4.141711 GGCAACTCATGTCTATGGTTAGGA 60.142 45.833 0.00 0.00 34.97 2.94
180 181 5.428253 GCAACTCATGTCTATGGTTAGGAA 58.572 41.667 0.00 0.00 34.97 3.36
181 182 5.880332 GCAACTCATGTCTATGGTTAGGAAA 59.120 40.000 0.00 0.00 34.97 3.13
182 183 6.183360 GCAACTCATGTCTATGGTTAGGAAAC 60.183 42.308 0.00 0.00 34.97 2.78
197 198 7.754851 GTTAGGAAACCTTAACCATCTTTGA 57.245 36.000 0.00 0.00 34.61 2.69
198 199 8.349568 GTTAGGAAACCTTAACCATCTTTGAT 57.650 34.615 0.00 0.00 34.61 2.57
199 200 8.459635 GTTAGGAAACCTTAACCATCTTTGATC 58.540 37.037 0.00 0.00 34.61 2.92
200 201 6.552008 AGGAAACCTTAACCATCTTTGATCA 58.448 36.000 0.00 0.00 0.00 2.92
201 202 7.010160 AGGAAACCTTAACCATCTTTGATCAA 58.990 34.615 3.38 3.38 0.00 2.57
202 203 7.039714 AGGAAACCTTAACCATCTTTGATCAAC 60.040 37.037 7.89 0.00 0.00 3.18
203 204 5.880054 ACCTTAACCATCTTTGATCAACG 57.120 39.130 7.89 6.62 0.00 4.10
204 205 5.556915 ACCTTAACCATCTTTGATCAACGA 58.443 37.500 16.08 16.08 0.00 3.85
205 206 5.643777 ACCTTAACCATCTTTGATCAACGAG 59.356 40.000 18.24 10.23 0.00 4.18
206 207 5.447818 CCTTAACCATCTTTGATCAACGAGC 60.448 44.000 18.24 0.00 0.00 5.03
207 208 3.340814 ACCATCTTTGATCAACGAGCT 57.659 42.857 18.24 2.03 0.00 4.09
208 209 4.471904 ACCATCTTTGATCAACGAGCTA 57.528 40.909 18.24 0.00 0.00 3.32
209 210 4.437239 ACCATCTTTGATCAACGAGCTAG 58.563 43.478 18.24 8.24 0.00 3.42
210 211 4.081420 ACCATCTTTGATCAACGAGCTAGT 60.081 41.667 18.24 10.56 0.00 2.57
211 212 4.505922 CCATCTTTGATCAACGAGCTAGTC 59.494 45.833 18.24 0.00 0.00 2.59
212 213 5.347342 CATCTTTGATCAACGAGCTAGTCT 58.653 41.667 18.24 0.00 0.00 3.24
213 214 6.460261 CCATCTTTGATCAACGAGCTAGTCTA 60.460 42.308 18.24 0.00 0.00 2.59
214 215 6.125327 TCTTTGATCAACGAGCTAGTCTAG 57.875 41.667 7.89 2.18 0.00 2.43
215 216 5.648526 TCTTTGATCAACGAGCTAGTCTAGT 59.351 40.000 7.89 0.00 31.68 2.57
216 217 6.822170 TCTTTGATCAACGAGCTAGTCTAGTA 59.178 38.462 7.89 0.00 30.15 1.82
217 218 6.606234 TTGATCAACGAGCTAGTCTAGTAG 57.394 41.667 3.38 3.39 30.15 2.57
218 219 5.915175 TGATCAACGAGCTAGTCTAGTAGA 58.085 41.667 8.68 0.00 30.15 2.59
219 220 5.986741 TGATCAACGAGCTAGTCTAGTAGAG 59.013 44.000 8.68 1.49 30.15 2.43
220 221 4.695396 TCAACGAGCTAGTCTAGTAGAGG 58.305 47.826 8.68 0.00 30.15 3.69
221 222 3.116079 ACGAGCTAGTCTAGTAGAGGC 57.884 52.381 8.68 5.92 0.00 4.70
222 223 2.701951 ACGAGCTAGTCTAGTAGAGGCT 59.298 50.000 17.02 17.02 44.48 4.58
223 224 3.243975 ACGAGCTAGTCTAGTAGAGGCTC 60.244 52.174 24.85 24.85 40.19 4.70
224 225 3.243941 CGAGCTAGTCTAGTAGAGGCTCA 60.244 52.174 29.12 0.00 40.19 4.26
225 226 4.062991 GAGCTAGTCTAGTAGAGGCTCAC 58.937 52.174 27.27 12.55 40.19 3.51
226 227 3.714798 AGCTAGTCTAGTAGAGGCTCACT 59.285 47.826 18.26 18.63 40.19 3.41
227 228 4.903049 AGCTAGTCTAGTAGAGGCTCACTA 59.097 45.833 18.26 18.74 40.19 2.74
228 229 5.011738 AGCTAGTCTAGTAGAGGCTCACTAG 59.988 48.000 29.00 29.00 40.19 2.57
229 230 4.699925 AGTCTAGTAGAGGCTCACTAGG 57.300 50.000 31.26 21.62 33.67 3.02
230 231 3.393278 AGTCTAGTAGAGGCTCACTAGGG 59.607 52.174 31.26 19.91 33.67 3.53
231 232 3.391955 GTCTAGTAGAGGCTCACTAGGGA 59.608 52.174 31.26 21.10 42.92 4.20
232 233 2.740506 AGTAGAGGCTCACTAGGGAC 57.259 55.000 18.26 2.90 0.00 4.46
233 234 1.923850 AGTAGAGGCTCACTAGGGACA 59.076 52.381 18.26 0.00 0.00 4.02
234 235 2.025898 GTAGAGGCTCACTAGGGACAC 58.974 57.143 18.26 0.00 0.00 3.67
235 236 0.681564 AGAGGCTCACTAGGGACACG 60.682 60.000 18.26 0.00 0.00 4.49
236 237 1.668101 GAGGCTCACTAGGGACACGG 61.668 65.000 10.25 0.00 0.00 4.94
237 238 1.982938 GGCTCACTAGGGACACGGT 60.983 63.158 0.00 0.00 0.00 4.83
238 239 0.682209 GGCTCACTAGGGACACGGTA 60.682 60.000 0.00 0.00 0.00 4.02
239 240 1.400737 GCTCACTAGGGACACGGTAT 58.599 55.000 0.00 0.00 0.00 2.73
240 241 1.755380 GCTCACTAGGGACACGGTATT 59.245 52.381 0.00 0.00 0.00 1.89
241 242 2.167900 GCTCACTAGGGACACGGTATTT 59.832 50.000 0.00 0.00 0.00 1.40
242 243 3.382546 GCTCACTAGGGACACGGTATTTA 59.617 47.826 0.00 0.00 0.00 1.40
243 244 4.038883 GCTCACTAGGGACACGGTATTTAT 59.961 45.833 0.00 0.00 0.00 1.40
244 245 5.452917 GCTCACTAGGGACACGGTATTTATT 60.453 44.000 0.00 0.00 0.00 1.40
245 246 6.549433 TCACTAGGGACACGGTATTTATTT 57.451 37.500 0.00 0.00 0.00 1.40
246 247 7.658525 TCACTAGGGACACGGTATTTATTTA 57.341 36.000 0.00 0.00 0.00 1.40
247 248 8.253867 TCACTAGGGACACGGTATTTATTTAT 57.746 34.615 0.00 0.00 0.00 1.40
248 249 8.145767 TCACTAGGGACACGGTATTTATTTATG 58.854 37.037 0.00 0.00 0.00 1.90
249 250 7.929785 CACTAGGGACACGGTATTTATTTATGT 59.070 37.037 0.00 0.00 0.00 2.29
250 251 9.146586 ACTAGGGACACGGTATTTATTTATGTA 57.853 33.333 0.00 0.00 0.00 2.29
253 254 8.098912 AGGGACACGGTATTTATTTATGTATCC 58.901 37.037 0.00 0.00 0.00 2.59
254 255 7.879160 GGGACACGGTATTTATTTATGTATCCA 59.121 37.037 0.00 0.00 0.00 3.41
255 256 8.715088 GGACACGGTATTTATTTATGTATCCAC 58.285 37.037 0.00 0.00 0.00 4.02
256 257 9.263538 GACACGGTATTTATTTATGTATCCACA 57.736 33.333 0.00 0.00 39.52 4.17
257 258 9.048446 ACACGGTATTTATTTATGTATCCACAC 57.952 33.333 0.00 0.00 37.54 3.82
258 259 9.047371 CACGGTATTTATTTATGTATCCACACA 57.953 33.333 0.00 0.00 37.54 3.72
259 260 9.787435 ACGGTATTTATTTATGTATCCACACAT 57.213 29.630 0.00 0.00 41.88 3.21
274 275 9.485591 GTATCCACACATGTATTTAAGTTTTCG 57.514 33.333 0.00 0.00 0.00 3.46
275 276 6.904498 TCCACACATGTATTTAAGTTTTCGG 58.096 36.000 0.00 0.00 0.00 4.30
276 277 6.487331 TCCACACATGTATTTAAGTTTTCGGT 59.513 34.615 0.00 0.00 0.00 4.69
277 278 6.799925 CCACACATGTATTTAAGTTTTCGGTC 59.200 38.462 0.00 0.00 0.00 4.79
278 279 7.356540 CACACATGTATTTAAGTTTTCGGTCA 58.643 34.615 0.00 0.00 0.00 4.02
279 280 7.858382 CACACATGTATTTAAGTTTTCGGTCAA 59.142 33.333 0.00 0.00 0.00 3.18
280 281 8.573035 ACACATGTATTTAAGTTTTCGGTCAAT 58.427 29.630 0.00 0.00 0.00 2.57
289 290 9.672086 TTTAAGTTTTCGGTCAATACAATTCTG 57.328 29.630 0.00 0.00 0.00 3.02
290 291 6.254281 AGTTTTCGGTCAATACAATTCTGG 57.746 37.500 0.00 0.00 0.00 3.86
291 292 5.768164 AGTTTTCGGTCAATACAATTCTGGT 59.232 36.000 0.00 0.00 0.00 4.00
292 293 6.938030 AGTTTTCGGTCAATACAATTCTGGTA 59.062 34.615 0.00 0.00 0.00 3.25
293 294 7.610305 AGTTTTCGGTCAATACAATTCTGGTAT 59.390 33.333 0.00 0.00 33.01 2.73
294 295 6.918892 TTCGGTCAATACAATTCTGGTATG 57.081 37.500 0.00 0.00 32.06 2.39
295 296 6.228616 TCGGTCAATACAATTCTGGTATGA 57.771 37.500 0.00 0.00 32.06 2.15
296 297 6.645306 TCGGTCAATACAATTCTGGTATGAA 58.355 36.000 0.00 0.00 32.06 2.57
297 298 7.279615 TCGGTCAATACAATTCTGGTATGAAT 58.720 34.615 0.00 0.00 38.19 2.57
298 299 8.425703 TCGGTCAATACAATTCTGGTATGAATA 58.574 33.333 0.00 0.00 35.82 1.75
299 300 9.051679 CGGTCAATACAATTCTGGTATGAATAA 57.948 33.333 0.00 0.00 35.82 1.40
359 360 8.465273 AACCATTTTATTATTGTCTCTAGGGC 57.535 34.615 0.00 0.00 0.00 5.19
360 361 7.582719 ACCATTTTATTATTGTCTCTAGGGCA 58.417 34.615 0.00 0.00 0.00 5.36
361 362 8.227507 ACCATTTTATTATTGTCTCTAGGGCAT 58.772 33.333 0.00 0.00 0.00 4.40
362 363 9.739276 CCATTTTATTATTGTCTCTAGGGCATA 57.261 33.333 0.00 0.00 0.00 3.14
367 368 9.959721 TTATTATTGTCTCTAGGGCATATTTCC 57.040 33.333 0.00 0.00 0.00 3.13
368 369 5.912149 ATTGTCTCTAGGGCATATTTCCA 57.088 39.130 0.00 0.00 0.00 3.53
369 370 5.912149 TTGTCTCTAGGGCATATTTCCAT 57.088 39.130 0.00 0.00 0.00 3.41
370 371 5.489792 TGTCTCTAGGGCATATTTCCATC 57.510 43.478 0.00 0.00 0.00 3.51
371 372 4.907269 TGTCTCTAGGGCATATTTCCATCA 59.093 41.667 0.00 0.00 0.00 3.07
372 373 5.221722 TGTCTCTAGGGCATATTTCCATCAC 60.222 44.000 0.00 0.00 0.00 3.06
373 374 4.907269 TCTCTAGGGCATATTTCCATCACA 59.093 41.667 0.00 0.00 0.00 3.58
374 375 5.369404 TCTCTAGGGCATATTTCCATCACAA 59.631 40.000 0.00 0.00 0.00 3.33
375 376 6.044754 TCTCTAGGGCATATTTCCATCACAAT 59.955 38.462 0.00 0.00 0.00 2.71
376 377 6.005823 TCTAGGGCATATTTCCATCACAATG 58.994 40.000 0.00 0.00 0.00 2.82
386 387 3.575506 ATCACAATGGTGGTGCGAT 57.424 47.368 0.00 0.00 45.32 4.58
387 388 1.097232 ATCACAATGGTGGTGCGATG 58.903 50.000 0.00 0.00 45.32 3.84
388 389 0.036022 TCACAATGGTGGTGCGATGA 59.964 50.000 0.00 0.00 45.32 2.92
389 390 1.097232 CACAATGGTGGTGCGATGAT 58.903 50.000 0.00 0.00 41.45 2.45
390 391 1.473677 CACAATGGTGGTGCGATGATT 59.526 47.619 0.00 0.00 41.45 2.57
391 392 1.473677 ACAATGGTGGTGCGATGATTG 59.526 47.619 0.00 0.00 0.00 2.67
392 393 0.457035 AATGGTGGTGCGATGATTGC 59.543 50.000 0.00 0.00 0.00 3.56
393 394 1.717791 ATGGTGGTGCGATGATTGCG 61.718 55.000 0.00 0.00 34.24 4.85
394 395 2.398554 GGTGGTGCGATGATTGCGT 61.399 57.895 0.00 0.00 34.24 5.24
395 396 1.060937 GTGGTGCGATGATTGCGTC 59.939 57.895 0.00 0.00 34.24 5.19
404 405 3.430609 GATGATTGCGTCGATGCTTAG 57.569 47.619 28.53 0.00 35.36 2.18
405 406 1.570813 TGATTGCGTCGATGCTTAGG 58.429 50.000 28.53 0.00 35.36 2.69
406 407 0.861837 GATTGCGTCGATGCTTAGGG 59.138 55.000 28.53 0.00 35.36 3.53
407 408 0.532862 ATTGCGTCGATGCTTAGGGG 60.533 55.000 28.53 0.00 35.36 4.79
408 409 2.967615 GCGTCGATGCTTAGGGGC 60.968 66.667 22.31 0.00 0.00 5.80
409 410 2.499205 CGTCGATGCTTAGGGGCA 59.501 61.111 0.00 0.00 46.63 5.36
410 411 1.883084 CGTCGATGCTTAGGGGCAC 60.883 63.158 0.00 0.00 45.36 5.01
411 412 1.522569 GTCGATGCTTAGGGGCACT 59.477 57.895 0.00 0.00 45.36 4.40
412 413 0.811616 GTCGATGCTTAGGGGCACTG 60.812 60.000 0.00 0.00 45.36 3.66
413 414 2.182842 CGATGCTTAGGGGCACTGC 61.183 63.158 0.00 0.00 45.36 4.40
429 430 4.465512 GCCGGCACTGCAACATCG 62.466 66.667 24.80 0.00 38.81 3.84
430 431 3.803082 CCGGCACTGCAACATCGG 61.803 66.667 2.82 2.30 0.00 4.18
431 432 4.465512 CGGCACTGCAACATCGGC 62.466 66.667 2.82 0.00 0.00 5.54
432 433 4.120331 GGCACTGCAACATCGGCC 62.120 66.667 2.82 0.00 0.00 6.13
433 434 3.058160 GCACTGCAACATCGGCCT 61.058 61.111 0.00 0.00 0.00 5.19
434 435 2.872557 CACTGCAACATCGGCCTG 59.127 61.111 0.00 0.00 0.00 4.85
435 436 2.360350 ACTGCAACATCGGCCTGG 60.360 61.111 0.00 0.00 0.00 4.45
436 437 3.136123 CTGCAACATCGGCCTGGG 61.136 66.667 0.00 0.00 0.00 4.45
447 448 4.382320 GCCTGGGCGACGGTAACA 62.382 66.667 0.00 0.00 0.00 2.41
448 449 2.125673 CCTGGGCGACGGTAACAG 60.126 66.667 0.00 0.00 0.00 3.16
449 450 2.642254 CCTGGGCGACGGTAACAGA 61.642 63.158 0.00 0.00 0.00 3.41
450 451 1.515954 CTGGGCGACGGTAACAGAT 59.484 57.895 0.00 0.00 0.00 2.90
451 452 0.806102 CTGGGCGACGGTAACAGATG 60.806 60.000 0.00 0.00 0.00 2.90
452 453 1.252215 TGGGCGACGGTAACAGATGA 61.252 55.000 0.00 0.00 0.00 2.92
453 454 0.804933 GGGCGACGGTAACAGATGAC 60.805 60.000 0.00 0.00 0.00 3.06
454 455 0.172803 GGCGACGGTAACAGATGACT 59.827 55.000 0.00 0.00 0.00 3.41
455 456 1.546834 GCGACGGTAACAGATGACTC 58.453 55.000 0.00 0.00 0.00 3.36
456 457 1.811428 CGACGGTAACAGATGACTCG 58.189 55.000 0.00 0.00 0.00 4.18
457 458 1.546834 GACGGTAACAGATGACTCGC 58.453 55.000 0.00 0.00 0.00 5.03
458 459 0.179171 ACGGTAACAGATGACTCGCG 60.179 55.000 0.00 0.00 0.00 5.87
459 460 0.098200 CGGTAACAGATGACTCGCGA 59.902 55.000 9.26 9.26 0.00 5.87
460 461 1.268589 CGGTAACAGATGACTCGCGAT 60.269 52.381 10.36 0.00 0.00 4.58
461 462 2.032290 CGGTAACAGATGACTCGCGATA 60.032 50.000 10.36 0.00 0.00 2.92
462 463 3.298317 GGTAACAGATGACTCGCGATAC 58.702 50.000 10.36 7.55 0.00 2.24
463 464 3.242969 GGTAACAGATGACTCGCGATACA 60.243 47.826 10.36 13.64 0.00 2.29
464 465 2.765108 ACAGATGACTCGCGATACAG 57.235 50.000 10.36 0.00 0.00 2.74
465 466 2.017782 ACAGATGACTCGCGATACAGT 58.982 47.619 10.36 3.18 0.00 3.55
466 467 2.223363 ACAGATGACTCGCGATACAGTG 60.223 50.000 10.36 15.61 0.00 3.66
467 468 2.032178 CAGATGACTCGCGATACAGTGA 59.968 50.000 10.36 0.00 0.00 3.41
472 473 2.672188 CTCGCGATACAGTGAGTAGG 57.328 55.000 10.36 0.00 42.15 3.18
473 474 1.941294 CTCGCGATACAGTGAGTAGGT 59.059 52.381 10.36 0.00 42.15 3.08
474 475 1.938577 TCGCGATACAGTGAGTAGGTC 59.061 52.381 3.71 0.00 35.85 3.85
475 476 1.669265 CGCGATACAGTGAGTAGGTCA 59.331 52.381 0.00 0.00 35.85 4.02
484 485 1.545841 TGAGTAGGTCACACGATGCT 58.454 50.000 0.00 0.00 0.00 3.79
485 486 1.202348 TGAGTAGGTCACACGATGCTG 59.798 52.381 0.00 0.00 0.00 4.41
486 487 0.108615 AGTAGGTCACACGATGCTGC 60.109 55.000 0.00 0.00 0.00 5.25
487 488 1.153842 TAGGTCACACGATGCTGCG 60.154 57.895 0.00 0.00 37.29 5.18
488 489 2.557059 TAGGTCACACGATGCTGCGG 62.557 60.000 0.00 0.00 35.12 5.69
489 490 4.152625 GTCACACGATGCTGCGGC 62.153 66.667 11.65 11.65 39.26 6.53
492 493 4.819761 ACACGATGCTGCGGCGAT 62.820 61.111 12.98 7.61 42.25 4.58
493 494 2.658268 CACGATGCTGCGGCGATA 60.658 61.111 12.98 0.00 42.25 2.92
494 495 2.355126 ACGATGCTGCGGCGATAG 60.355 61.111 12.98 9.38 42.25 2.08
495 496 3.108289 CGATGCTGCGGCGATAGG 61.108 66.667 12.98 0.00 42.25 2.57
496 497 2.740055 GATGCTGCGGCGATAGGG 60.740 66.667 12.98 0.00 42.25 3.53
497 498 4.320456 ATGCTGCGGCGATAGGGG 62.320 66.667 12.98 0.00 42.25 4.79
505 506 4.171103 GCGATAGGGGCGGGTGTT 62.171 66.667 0.00 0.00 0.00 3.32
506 507 2.203015 CGATAGGGGCGGGTGTTG 60.203 66.667 0.00 0.00 0.00 3.33
507 508 2.516225 GATAGGGGCGGGTGTTGC 60.516 66.667 0.00 0.00 0.00 4.17
508 509 3.334891 ATAGGGGCGGGTGTTGCA 61.335 61.111 0.00 0.00 0.00 4.08
509 510 2.830186 GATAGGGGCGGGTGTTGCAA 62.830 60.000 0.00 0.00 0.00 4.08
510 511 2.837031 ATAGGGGCGGGTGTTGCAAG 62.837 60.000 0.00 0.00 0.00 4.01
515 516 3.977244 CGGGTGTTGCAAGCCCAC 61.977 66.667 28.46 20.15 42.44 4.61
516 517 3.977244 GGGTGTTGCAAGCCCACG 61.977 66.667 26.01 0.00 41.93 4.94
517 518 3.216292 GGTGTTGCAAGCCCACGT 61.216 61.111 0.00 0.00 0.00 4.49
518 519 2.781158 GGTGTTGCAAGCCCACGTT 61.781 57.895 0.00 0.00 0.00 3.99
519 520 1.588667 GTGTTGCAAGCCCACGTTG 60.589 57.895 0.00 0.00 0.00 4.10
520 521 2.027460 GTTGCAAGCCCACGTTGG 59.973 61.111 0.00 0.16 37.25 3.77
521 522 2.124109 TTGCAAGCCCACGTTGGA 60.124 55.556 10.41 0.00 40.96 3.53
522 523 1.530419 TTGCAAGCCCACGTTGGAT 60.530 52.632 10.41 0.00 40.96 3.41
523 524 1.804396 TTGCAAGCCCACGTTGGATG 61.804 55.000 10.41 8.56 40.96 3.51
524 525 2.268076 GCAAGCCCACGTTGGATGT 61.268 57.895 10.41 0.00 40.96 3.06
525 526 1.805428 GCAAGCCCACGTTGGATGTT 61.805 55.000 10.41 0.00 40.96 2.71
526 527 0.039256 CAAGCCCACGTTGGATGTTG 60.039 55.000 10.41 5.74 40.96 3.33
527 528 1.805428 AAGCCCACGTTGGATGTTGC 61.805 55.000 10.41 2.44 40.96 4.17
528 529 2.560119 GCCCACGTTGGATGTTGCA 61.560 57.895 10.41 0.00 40.96 4.08
529 530 2.037053 CCCACGTTGGATGTTGCAA 58.963 52.632 0.00 0.00 40.96 4.08
530 531 0.039256 CCCACGTTGGATGTTGCAAG 60.039 55.000 0.00 0.00 40.96 4.01
531 532 0.664166 CCACGTTGGATGTTGCAAGC 60.664 55.000 0.00 0.00 40.96 4.01
532 533 0.664166 CACGTTGGATGTTGCAAGCC 60.664 55.000 0.00 2.32 0.00 4.35
533 534 1.442520 CGTTGGATGTTGCAAGCCG 60.443 57.895 0.00 0.00 0.00 5.52
534 535 1.851021 CGTTGGATGTTGCAAGCCGA 61.851 55.000 0.00 0.00 0.00 5.54
535 536 0.527565 GTTGGATGTTGCAAGCCGAT 59.472 50.000 0.00 0.00 0.00 4.18
536 537 0.810648 TTGGATGTTGCAAGCCGATC 59.189 50.000 0.00 0.00 0.00 3.69
537 538 1.353103 GGATGTTGCAAGCCGATCG 59.647 57.895 8.51 8.51 0.00 3.69
538 539 1.297893 GATGTTGCAAGCCGATCGC 60.298 57.895 10.32 5.46 37.98 4.58
539 540 2.652893 GATGTTGCAAGCCGATCGCC 62.653 60.000 10.32 0.00 38.78 5.54
540 541 4.520846 GTTGCAAGCCGATCGCCG 62.521 66.667 10.32 0.00 38.78 6.46
545 546 3.833645 AAGCCGATCGCCGCACTA 61.834 61.111 16.88 0.00 38.78 2.74
546 547 4.570663 AGCCGATCGCCGCACTAC 62.571 66.667 16.88 0.00 38.78 2.73
550 551 4.865761 GATCGCCGCACTACCGCA 62.866 66.667 0.00 0.00 0.00 5.69
551 552 4.444838 ATCGCCGCACTACCGCAA 62.445 61.111 0.00 0.00 0.00 4.85
575 576 3.540014 CGAGCGACGCTGCAAGAG 61.540 66.667 29.85 7.32 39.88 2.85
576 577 3.184683 GAGCGACGCTGCAAGAGG 61.185 66.667 29.85 0.00 39.88 3.69
577 578 4.749310 AGCGACGCTGCAAGAGGG 62.749 66.667 23.84 0.00 38.45 4.30
582 583 4.749310 CGCTGCAAGAGGGTCGCT 62.749 66.667 0.00 0.00 34.07 4.93
583 584 3.123620 GCTGCAAGAGGGTCGCTG 61.124 66.667 0.00 0.00 34.07 5.18
584 585 2.435586 CTGCAAGAGGGTCGCTGG 60.436 66.667 0.00 0.00 34.07 4.85
585 586 3.965539 CTGCAAGAGGGTCGCTGGG 62.966 68.421 0.00 0.00 34.07 4.45
614 615 4.395583 GCAAGCCAGTGCGAGTGC 62.396 66.667 0.00 0.00 44.33 4.40
615 616 3.730761 CAAGCCAGTGCGAGTGCC 61.731 66.667 0.00 0.00 44.33 5.01
616 617 4.254709 AAGCCAGTGCGAGTGCCA 62.255 61.111 0.00 0.00 44.33 4.92
617 618 4.694233 AGCCAGTGCGAGTGCCAG 62.694 66.667 0.00 0.00 44.33 4.85
619 620 4.694233 CCAGTGCGAGTGCCAGCT 62.694 66.667 0.00 0.00 41.78 4.24
620 621 3.420606 CAGTGCGAGTGCCAGCTG 61.421 66.667 6.78 6.78 41.78 4.24
642 643 4.008933 GAGCGGCCACACAGAGGT 62.009 66.667 2.24 0.00 0.00 3.85
653 654 3.067091 CAGAGGTGCTGTGAGGCT 58.933 61.111 0.00 0.00 39.85 4.58
654 655 1.375652 CAGAGGTGCTGTGAGGCTG 60.376 63.158 0.00 0.00 39.85 4.85
655 656 1.534959 AGAGGTGCTGTGAGGCTGA 60.535 57.895 0.00 0.00 0.00 4.26
656 657 0.908656 AGAGGTGCTGTGAGGCTGAT 60.909 55.000 0.00 0.00 0.00 2.90
657 658 0.461693 GAGGTGCTGTGAGGCTGATC 60.462 60.000 0.00 0.00 0.00 2.92
658 659 1.196766 AGGTGCTGTGAGGCTGATCA 61.197 55.000 0.00 0.00 0.00 2.92
663 664 4.504132 GTGAGGCTGATCACGGAC 57.496 61.111 0.00 0.00 40.18 4.79
664 665 1.893786 GTGAGGCTGATCACGGACT 59.106 57.895 0.00 0.00 44.51 3.85
665 666 1.103803 GTGAGGCTGATCACGGACTA 58.896 55.000 0.00 0.00 41.45 2.59
666 667 1.103803 TGAGGCTGATCACGGACTAC 58.896 55.000 0.00 0.00 41.45 2.73
667 668 0.386113 GAGGCTGATCACGGACTACC 59.614 60.000 0.00 0.00 41.45 3.18
679 680 2.488639 GGACTACCGCTAGTACTTGC 57.511 55.000 17.94 17.94 32.96 4.01
680 681 2.022934 GGACTACCGCTAGTACTTGCT 58.977 52.381 23.62 11.13 32.96 3.91
681 682 2.223525 GGACTACCGCTAGTACTTGCTG 60.224 54.545 23.62 20.11 32.96 4.41
682 683 2.422832 GACTACCGCTAGTACTTGCTGT 59.577 50.000 24.26 24.26 32.96 4.40
683 684 2.163815 ACTACCGCTAGTACTTGCTGTG 59.836 50.000 27.36 20.71 30.81 3.66
684 685 1.254026 ACCGCTAGTACTTGCTGTGA 58.746 50.000 21.46 0.00 29.48 3.58
685 686 1.202582 ACCGCTAGTACTTGCTGTGAG 59.797 52.381 21.46 9.22 29.48 3.51
686 687 1.272781 CGCTAGTACTTGCTGTGAGC 58.727 55.000 23.62 13.34 42.82 4.26
687 688 1.135257 CGCTAGTACTTGCTGTGAGCT 60.135 52.381 23.62 0.00 42.97 4.09
688 689 2.535331 GCTAGTACTTGCTGTGAGCTC 58.465 52.381 20.15 6.82 42.97 4.09
689 690 2.094494 GCTAGTACTTGCTGTGAGCTCA 60.094 50.000 20.15 13.74 42.97 4.26
690 691 3.615110 GCTAGTACTTGCTGTGAGCTCAA 60.615 47.826 20.19 8.16 42.97 3.02
691 692 2.760374 AGTACTTGCTGTGAGCTCAAC 58.240 47.619 20.19 13.28 42.97 3.18
692 693 1.457303 GTACTTGCTGTGAGCTCAACG 59.543 52.381 20.19 13.41 42.97 4.10
693 694 1.206072 CTTGCTGTGAGCTCAACGC 59.794 57.895 20.19 22.70 42.97 4.84
694 695 2.490262 CTTGCTGTGAGCTCAACGCG 62.490 60.000 20.19 3.53 42.97 6.01
695 696 3.782244 GCTGTGAGCTCAACGCGG 61.782 66.667 20.19 12.57 45.59 6.46
696 697 2.049156 CTGTGAGCTCAACGCGGA 60.049 61.111 20.19 0.00 45.59 5.54
697 698 2.355837 TGTGAGCTCAACGCGGAC 60.356 61.111 20.19 4.49 45.59 4.79
698 699 3.470567 GTGAGCTCAACGCGGACG 61.471 66.667 20.19 0.00 45.59 4.79
710 711 3.812019 CGGACGTGCTACGAGGCT 61.812 66.667 14.18 0.00 46.05 4.58
711 712 2.202623 GGACGTGCTACGAGGCTG 60.203 66.667 14.18 0.00 46.05 4.85
712 713 2.881352 GACGTGCTACGAGGCTGC 60.881 66.667 14.18 0.00 46.05 5.25
713 714 3.626680 GACGTGCTACGAGGCTGCA 62.627 63.158 14.18 0.00 46.05 4.41
714 715 3.181967 CGTGCTACGAGGCTGCAC 61.182 66.667 15.49 15.49 46.05 4.57
724 725 2.046507 GGCTGCACCTCTCTGTGG 60.047 66.667 0.50 0.00 36.73 4.17
725 726 2.046507 GCTGCACCTCTCTGTGGG 60.047 66.667 0.00 0.00 36.73 4.61
726 727 2.888447 GCTGCACCTCTCTGTGGGT 61.888 63.158 0.00 0.00 36.73 4.51
727 728 1.757306 CTGCACCTCTCTGTGGGTT 59.243 57.895 0.00 0.00 36.73 4.11
728 729 0.604780 CTGCACCTCTCTGTGGGTTG 60.605 60.000 0.00 0.00 36.73 3.77
729 730 1.344953 TGCACCTCTCTGTGGGTTGT 61.345 55.000 0.00 0.00 36.73 3.32
730 731 0.685097 GCACCTCTCTGTGGGTTGTA 59.315 55.000 0.00 0.00 36.73 2.41
731 732 1.071699 GCACCTCTCTGTGGGTTGTAA 59.928 52.381 0.00 0.00 36.73 2.41
732 733 2.767505 CACCTCTCTGTGGGTTGTAAC 58.232 52.381 0.00 0.00 32.95 2.50
742 743 3.051479 GTTGTAACCACCGGGGCG 61.051 66.667 6.32 0.00 42.05 6.13
753 754 3.616721 CGGGGCGGAGATAGGTGG 61.617 72.222 0.00 0.00 0.00 4.61
754 755 3.242291 GGGGCGGAGATAGGTGGG 61.242 72.222 0.00 0.00 0.00 4.61
755 756 2.122989 GGGCGGAGATAGGTGGGA 60.123 66.667 0.00 0.00 0.00 4.37
756 757 1.764854 GGGCGGAGATAGGTGGGAA 60.765 63.158 0.00 0.00 0.00 3.97
757 758 1.128188 GGGCGGAGATAGGTGGGAAT 61.128 60.000 0.00 0.00 0.00 3.01
758 759 0.035458 GGCGGAGATAGGTGGGAATG 59.965 60.000 0.00 0.00 0.00 2.67
759 760 1.048601 GCGGAGATAGGTGGGAATGA 58.951 55.000 0.00 0.00 0.00 2.57
760 761 1.270358 GCGGAGATAGGTGGGAATGAC 60.270 57.143 0.00 0.00 0.00 3.06
761 762 1.344763 CGGAGATAGGTGGGAATGACC 59.655 57.143 0.00 0.00 38.08 4.02
762 763 2.695585 GGAGATAGGTGGGAATGACCT 58.304 52.381 0.00 0.00 46.10 3.85
763 764 2.370189 GGAGATAGGTGGGAATGACCTG 59.630 54.545 0.00 0.00 43.99 4.00
764 765 3.309296 GAGATAGGTGGGAATGACCTGA 58.691 50.000 0.00 0.00 43.99 3.86
765 766 3.312890 AGATAGGTGGGAATGACCTGAG 58.687 50.000 0.00 0.00 43.99 3.35
766 767 1.204146 TAGGTGGGAATGACCTGAGC 58.796 55.000 0.00 0.00 43.99 4.26
767 768 1.450312 GGTGGGAATGACCTGAGCG 60.450 63.158 0.00 0.00 38.98 5.03
768 769 2.109126 GTGGGAATGACCTGAGCGC 61.109 63.158 0.00 0.00 38.98 5.92
771 772 1.442526 GGGAATGACCTGAGCGCATG 61.443 60.000 11.47 0.00 38.98 4.06
961 973 1.153667 CAACCAGAGAGGAGAGCGC 60.154 63.158 0.00 0.00 41.22 5.92
962 974 2.705821 AACCAGAGAGGAGAGCGCG 61.706 63.158 0.00 0.00 41.22 6.86
963 975 3.137459 CCAGAGAGGAGAGCGCGT 61.137 66.667 8.43 0.00 41.22 6.01
964 976 2.407210 CAGAGAGGAGAGCGCGTC 59.593 66.667 8.43 2.43 0.00 5.19
965 977 3.199190 AGAGAGGAGAGCGCGTCG 61.199 66.667 8.43 0.00 0.00 5.12
1278 1290 3.849951 CTCCCCGTGGTGCGCTAT 61.850 66.667 9.73 0.00 39.71 2.97
1691 1703 3.990318 AGTTTCTGTTGTAGCTTTGGC 57.010 42.857 0.00 0.00 39.06 4.52
1793 1859 7.648908 TGATGATTGTCAGTTTCATTGTTCAAC 59.351 33.333 0.00 0.00 30.48 3.18
1897 1970 3.129287 CCGAAGAGGCAAAAGTAATGCAT 59.871 43.478 0.00 0.00 45.60 3.96
1998 2181 6.708676 ACTTGTTAAAAGTACACGTAGTTGC 58.291 36.000 0.00 0.00 41.61 4.17
2003 2186 8.489559 TGTTAAAAGTACACGTAGTTGCTAATG 58.510 33.333 0.00 0.00 41.61 1.90
2027 2210 7.915508 TGATTTTGAGTATGTATAAGCAACGG 58.084 34.615 0.00 0.00 0.00 4.44
2087 2270 7.860373 GCTATATTCTCGAGGCTATCATACAAG 59.140 40.741 13.56 4.74 0.00 3.16
2115 2298 1.399791 GCATAGACAGCAAGCCAGAAC 59.600 52.381 0.00 0.00 0.00 3.01
2117 2300 2.751166 TAGACAGCAAGCCAGAACTC 57.249 50.000 0.00 0.00 0.00 3.01
2131 2314 4.797933 GCCAGAACTCGAGAAAGAAGTCTT 60.798 45.833 21.68 0.00 37.91 3.01
2179 2364 2.680370 ATTGACCCCTTCCTCGCCC 61.680 63.158 0.00 0.00 0.00 6.13
2524 2717 2.112279 ATAATTACTCCCTCCGGGCA 57.888 50.000 0.00 0.00 43.94 5.36
2525 2718 2.112279 TAATTACTCCCTCCGGGCAT 57.888 50.000 0.00 0.00 43.94 4.40
2549 2742 5.728351 TTGAACTAAAACCTCGTCACTTG 57.272 39.130 0.00 0.00 0.00 3.16
2559 2752 3.513912 ACCTCGTCACTTGTTATGGATCA 59.486 43.478 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.751351 TGCAACTCTCGGATACCAGAG 59.249 52.381 0.00 0.00 41.81 3.35
1 2 1.847328 TGCAACTCTCGGATACCAGA 58.153 50.000 0.00 0.00 0.00 3.86
2 3 2.101415 TCATGCAACTCTCGGATACCAG 59.899 50.000 0.00 0.00 0.00 4.00
3 4 2.107366 TCATGCAACTCTCGGATACCA 58.893 47.619 0.00 0.00 0.00 3.25
4 5 2.890808 TCATGCAACTCTCGGATACC 57.109 50.000 0.00 0.00 0.00 2.73
5 6 4.233789 GAGATCATGCAACTCTCGGATAC 58.766 47.826 7.52 0.00 0.00 2.24
6 7 3.891366 TGAGATCATGCAACTCTCGGATA 59.109 43.478 14.91 0.49 38.59 2.59
7 8 2.697229 TGAGATCATGCAACTCTCGGAT 59.303 45.455 14.91 1.34 38.59 4.18
8 9 2.102578 TGAGATCATGCAACTCTCGGA 58.897 47.619 14.91 1.29 38.59 4.55
9 10 2.591571 TGAGATCATGCAACTCTCGG 57.408 50.000 14.91 0.00 38.59 4.63
20 21 2.036992 GCTCCTTCGACCATGAGATCAT 59.963 50.000 0.00 0.00 36.96 2.45
21 22 1.410517 GCTCCTTCGACCATGAGATCA 59.589 52.381 0.00 0.00 0.00 2.92
22 23 1.410517 TGCTCCTTCGACCATGAGATC 59.589 52.381 0.00 0.00 0.00 2.75
23 24 1.489481 TGCTCCTTCGACCATGAGAT 58.511 50.000 0.00 0.00 0.00 2.75
24 25 1.137675 CATGCTCCTTCGACCATGAGA 59.862 52.381 0.00 0.00 35.04 3.27
25 26 1.134580 ACATGCTCCTTCGACCATGAG 60.135 52.381 12.98 5.98 36.14 2.90
26 27 0.904649 ACATGCTCCTTCGACCATGA 59.095 50.000 12.98 0.00 36.14 3.07
27 28 2.602257 TACATGCTCCTTCGACCATG 57.398 50.000 0.00 0.00 37.86 3.66
28 29 3.845781 AATACATGCTCCTTCGACCAT 57.154 42.857 0.00 0.00 0.00 3.55
29 30 3.055458 TCAAATACATGCTCCTTCGACCA 60.055 43.478 0.00 0.00 0.00 4.02
30 31 3.309954 GTCAAATACATGCTCCTTCGACC 59.690 47.826 0.00 0.00 0.00 4.79
31 32 3.932710 TGTCAAATACATGCTCCTTCGAC 59.067 43.478 0.00 0.00 31.43 4.20
32 33 4.200838 TGTCAAATACATGCTCCTTCGA 57.799 40.909 0.00 0.00 31.43 3.71
58 59 5.910723 CGTTCAGTTTATTGCTACCGTTTTT 59.089 36.000 0.00 0.00 0.00 1.94
59 60 5.236911 TCGTTCAGTTTATTGCTACCGTTTT 59.763 36.000 0.00 0.00 0.00 2.43
60 61 4.751098 TCGTTCAGTTTATTGCTACCGTTT 59.249 37.500 0.00 0.00 0.00 3.60
61 62 4.309099 TCGTTCAGTTTATTGCTACCGTT 58.691 39.130 0.00 0.00 0.00 4.44
62 63 3.916761 TCGTTCAGTTTATTGCTACCGT 58.083 40.909 0.00 0.00 0.00 4.83
63 64 4.565166 TGATCGTTCAGTTTATTGCTACCG 59.435 41.667 0.00 0.00 0.00 4.02
64 65 6.604735 ATGATCGTTCAGTTTATTGCTACC 57.395 37.500 2.21 0.00 34.73 3.18
65 66 8.765219 ACATATGATCGTTCAGTTTATTGCTAC 58.235 33.333 10.38 0.00 34.73 3.58
66 67 8.887036 ACATATGATCGTTCAGTTTATTGCTA 57.113 30.769 10.38 0.00 34.73 3.49
67 68 7.792374 ACATATGATCGTTCAGTTTATTGCT 57.208 32.000 10.38 0.00 34.73 3.91
68 69 9.929722 TTAACATATGATCGTTCAGTTTATTGC 57.070 29.630 10.38 0.00 34.73 3.56
71 72 9.547753 AGCTTAACATATGATCGTTCAGTTTAT 57.452 29.630 10.38 0.00 34.73 1.40
72 73 8.942338 AGCTTAACATATGATCGTTCAGTTTA 57.058 30.769 10.38 0.00 34.73 2.01
73 74 7.849804 AGCTTAACATATGATCGTTCAGTTT 57.150 32.000 10.38 0.00 34.73 2.66
74 75 8.818057 GTTAGCTTAACATATGATCGTTCAGTT 58.182 33.333 10.38 4.04 38.52 3.16
75 76 7.979537 TGTTAGCTTAACATATGATCGTTCAGT 59.020 33.333 10.38 0.00 43.23 3.41
76 77 8.352752 TGTTAGCTTAACATATGATCGTTCAG 57.647 34.615 10.38 0.00 43.23 3.02
77 78 8.194769 TCTGTTAGCTTAACATATGATCGTTCA 58.805 33.333 10.38 0.00 46.51 3.18
78 79 8.575565 TCTGTTAGCTTAACATATGATCGTTC 57.424 34.615 10.38 0.00 46.51 3.95
80 81 9.847706 CTATCTGTTAGCTTAACATATGATCGT 57.152 33.333 10.38 0.00 46.51 3.73
81 82 9.295214 CCTATCTGTTAGCTTAACATATGATCG 57.705 37.037 10.38 0.00 46.51 3.69
84 85 9.368416 AGACCTATCTGTTAGCTTAACATATGA 57.632 33.333 10.38 0.00 46.51 2.15
85 86 9.988815 AAGACCTATCTGTTAGCTTAACATATG 57.011 33.333 0.00 0.00 46.51 1.78
86 87 9.988815 CAAGACCTATCTGTTAGCTTAACATAT 57.011 33.333 0.00 2.25 46.51 1.78
87 88 8.978472 ACAAGACCTATCTGTTAGCTTAACATA 58.022 33.333 0.00 0.00 46.51 2.29
88 89 7.852263 ACAAGACCTATCTGTTAGCTTAACAT 58.148 34.615 0.00 0.00 46.51 2.71
89 90 7.241042 ACAAGACCTATCTGTTAGCTTAACA 57.759 36.000 0.00 0.00 45.66 2.41
90 91 6.757478 GGACAAGACCTATCTGTTAGCTTAAC 59.243 42.308 0.00 0.00 34.48 2.01
91 92 6.439375 TGGACAAGACCTATCTGTTAGCTTAA 59.561 38.462 0.00 0.00 34.48 1.85
92 93 5.955959 TGGACAAGACCTATCTGTTAGCTTA 59.044 40.000 0.00 0.00 34.48 3.09
93 94 4.777896 TGGACAAGACCTATCTGTTAGCTT 59.222 41.667 0.00 0.00 34.48 3.74
94 95 4.353777 TGGACAAGACCTATCTGTTAGCT 58.646 43.478 0.00 0.00 34.48 3.32
95 96 4.737855 TGGACAAGACCTATCTGTTAGC 57.262 45.455 0.00 0.00 34.48 3.09
96 97 6.127338 TGTGATGGACAAGACCTATCTGTTAG 60.127 42.308 0.00 0.00 34.48 2.34
97 98 5.719563 TGTGATGGACAAGACCTATCTGTTA 59.280 40.000 0.00 0.00 34.48 2.41
98 99 4.532126 TGTGATGGACAAGACCTATCTGTT 59.468 41.667 0.00 0.00 34.48 3.16
99 100 4.096681 TGTGATGGACAAGACCTATCTGT 58.903 43.478 0.00 0.00 34.48 3.41
100 101 4.743057 TGTGATGGACAAGACCTATCTG 57.257 45.455 0.00 0.00 34.48 2.90
101 102 4.964897 TGATGTGATGGACAAGACCTATCT 59.035 41.667 0.00 0.00 38.36 1.98
102 103 5.282055 TGATGTGATGGACAAGACCTATC 57.718 43.478 0.00 0.00 38.36 2.08
103 104 5.901413 ATGATGTGATGGACAAGACCTAT 57.099 39.130 0.00 0.00 38.36 2.57
104 105 5.426509 AGAATGATGTGATGGACAAGACCTA 59.573 40.000 0.00 0.00 38.36 3.08
105 106 4.226846 AGAATGATGTGATGGACAAGACCT 59.773 41.667 0.00 0.00 38.36 3.85
106 107 4.521146 AGAATGATGTGATGGACAAGACC 58.479 43.478 0.00 0.00 38.36 3.85
107 108 4.574013 GGAGAATGATGTGATGGACAAGAC 59.426 45.833 0.00 0.00 38.36 3.01
108 109 4.472470 AGGAGAATGATGTGATGGACAAGA 59.528 41.667 0.00 0.00 38.36 3.02
109 110 4.778579 AGGAGAATGATGTGATGGACAAG 58.221 43.478 0.00 0.00 38.36 3.16
110 111 4.849813 AGGAGAATGATGTGATGGACAA 57.150 40.909 0.00 0.00 38.36 3.18
111 112 5.955961 TTAGGAGAATGATGTGATGGACA 57.044 39.130 0.00 0.00 39.53 4.02
112 113 6.528321 TCATTAGGAGAATGATGTGATGGAC 58.472 40.000 0.00 0.00 32.21 4.02
113 114 6.752285 TCATTAGGAGAATGATGTGATGGA 57.248 37.500 0.00 0.00 32.21 3.41
121 122 6.575847 CGGGATCACATCATTAGGAGAATGAT 60.576 42.308 6.90 6.90 45.40 2.45
122 123 5.279657 CGGGATCACATCATTAGGAGAATGA 60.280 44.000 0.00 2.66 40.50 2.57
123 124 4.934001 CGGGATCACATCATTAGGAGAATG 59.066 45.833 0.00 0.00 0.00 2.67
124 125 4.594920 ACGGGATCACATCATTAGGAGAAT 59.405 41.667 0.00 0.00 0.00 2.40
125 126 3.967326 ACGGGATCACATCATTAGGAGAA 59.033 43.478 0.00 0.00 0.00 2.87
126 127 3.576861 ACGGGATCACATCATTAGGAGA 58.423 45.455 0.00 0.00 0.00 3.71
127 128 4.342862 AACGGGATCACATCATTAGGAG 57.657 45.455 0.00 0.00 0.00 3.69
128 129 5.542251 TGATAACGGGATCACATCATTAGGA 59.458 40.000 0.00 0.00 30.75 2.94
129 130 5.793817 TGATAACGGGATCACATCATTAGG 58.206 41.667 0.00 0.00 30.75 2.69
130 131 7.728847 TTTGATAACGGGATCACATCATTAG 57.271 36.000 0.00 0.00 35.56 1.73
131 132 7.174772 CCATTTGATAACGGGATCACATCATTA 59.825 37.037 0.00 0.00 35.56 1.90
132 133 6.016024 CCATTTGATAACGGGATCACATCATT 60.016 38.462 0.00 0.00 35.56 2.57
133 134 5.474532 CCATTTGATAACGGGATCACATCAT 59.525 40.000 0.00 0.00 35.56 2.45
134 135 4.821260 CCATTTGATAACGGGATCACATCA 59.179 41.667 0.00 0.00 35.56 3.07
135 136 4.320494 GCCATTTGATAACGGGATCACATC 60.320 45.833 0.00 0.00 35.56 3.06
136 137 3.569701 GCCATTTGATAACGGGATCACAT 59.430 43.478 0.00 0.00 35.56 3.21
137 138 2.948979 GCCATTTGATAACGGGATCACA 59.051 45.455 0.00 0.00 35.56 3.58
138 139 2.948979 TGCCATTTGATAACGGGATCAC 59.051 45.455 0.00 0.00 35.56 3.06
139 140 3.289407 TGCCATTTGATAACGGGATCA 57.711 42.857 0.00 0.00 33.96 2.92
140 141 3.632145 AGTTGCCATTTGATAACGGGATC 59.368 43.478 0.00 0.00 0.00 3.36
141 142 3.631250 AGTTGCCATTTGATAACGGGAT 58.369 40.909 0.00 0.00 0.00 3.85
142 143 3.013921 GAGTTGCCATTTGATAACGGGA 58.986 45.455 0.00 0.00 0.00 5.14
143 144 2.752354 TGAGTTGCCATTTGATAACGGG 59.248 45.455 0.00 0.00 0.00 5.28
144 145 4.142403 ACATGAGTTGCCATTTGATAACGG 60.142 41.667 0.00 0.00 0.00 4.44
145 146 4.985413 ACATGAGTTGCCATTTGATAACG 58.015 39.130 0.00 0.00 0.00 3.18
146 147 6.199937 AGACATGAGTTGCCATTTGATAAC 57.800 37.500 0.00 0.00 0.00 1.89
147 148 7.013559 CCATAGACATGAGTTGCCATTTGATAA 59.986 37.037 0.00 0.00 33.67 1.75
148 149 6.487668 CCATAGACATGAGTTGCCATTTGATA 59.512 38.462 0.00 0.00 33.67 2.15
149 150 5.301045 CCATAGACATGAGTTGCCATTTGAT 59.699 40.000 0.00 0.00 33.67 2.57
150 151 4.641541 CCATAGACATGAGTTGCCATTTGA 59.358 41.667 0.00 0.00 33.67 2.69
151 152 4.400251 ACCATAGACATGAGTTGCCATTTG 59.600 41.667 0.00 0.00 33.67 2.32
152 153 4.603131 ACCATAGACATGAGTTGCCATTT 58.397 39.130 0.00 0.00 33.67 2.32
153 154 4.240881 ACCATAGACATGAGTTGCCATT 57.759 40.909 0.00 0.00 33.67 3.16
154 155 3.939740 ACCATAGACATGAGTTGCCAT 57.060 42.857 0.00 0.00 33.67 4.40
155 156 3.719268 AACCATAGACATGAGTTGCCA 57.281 42.857 0.00 0.00 33.67 4.92
156 157 4.130118 CCTAACCATAGACATGAGTTGCC 58.870 47.826 0.00 0.00 33.67 4.52
157 158 5.023533 TCCTAACCATAGACATGAGTTGC 57.976 43.478 0.00 0.00 33.67 4.17
158 159 7.308782 GTTTCCTAACCATAGACATGAGTTG 57.691 40.000 0.00 0.00 33.67 3.16
173 174 7.754851 TCAAAGATGGTTAAGGTTTCCTAAC 57.245 36.000 0.00 0.00 31.13 2.34
174 175 8.167392 TGATCAAAGATGGTTAAGGTTTCCTAA 58.833 33.333 0.00 0.00 31.13 2.69
175 176 7.695055 TGATCAAAGATGGTTAAGGTTTCCTA 58.305 34.615 0.00 0.00 31.13 2.94
176 177 6.552008 TGATCAAAGATGGTTAAGGTTTCCT 58.448 36.000 0.00 0.00 33.87 3.36
177 178 6.834168 TGATCAAAGATGGTTAAGGTTTCC 57.166 37.500 0.00 0.00 0.00 3.13
178 179 6.801862 CGTTGATCAAAGATGGTTAAGGTTTC 59.198 38.462 15.34 0.00 0.00 2.78
179 180 6.488683 TCGTTGATCAAAGATGGTTAAGGTTT 59.511 34.615 18.50 0.00 0.00 3.27
180 181 6.001460 TCGTTGATCAAAGATGGTTAAGGTT 58.999 36.000 18.50 0.00 0.00 3.50
181 182 5.556915 TCGTTGATCAAAGATGGTTAAGGT 58.443 37.500 18.50 0.00 0.00 3.50
182 183 5.447818 GCTCGTTGATCAAAGATGGTTAAGG 60.448 44.000 21.83 10.54 0.00 2.69
183 184 5.352569 AGCTCGTTGATCAAAGATGGTTAAG 59.647 40.000 21.83 11.16 0.00 1.85
184 185 5.245531 AGCTCGTTGATCAAAGATGGTTAA 58.754 37.500 21.83 1.24 0.00 2.01
185 186 4.832248 AGCTCGTTGATCAAAGATGGTTA 58.168 39.130 21.83 1.90 0.00 2.85
186 187 3.679389 AGCTCGTTGATCAAAGATGGTT 58.321 40.909 21.83 8.86 0.00 3.67
187 188 3.340814 AGCTCGTTGATCAAAGATGGT 57.659 42.857 21.83 17.63 0.00 3.55
188 189 4.437239 ACTAGCTCGTTGATCAAAGATGG 58.563 43.478 21.83 14.18 0.00 3.51
189 190 5.347342 AGACTAGCTCGTTGATCAAAGATG 58.653 41.667 21.83 16.63 0.00 2.90
190 191 5.590530 AGACTAGCTCGTTGATCAAAGAT 57.409 39.130 21.83 12.82 0.00 2.40
191 192 5.648526 ACTAGACTAGCTCGTTGATCAAAGA 59.351 40.000 20.62 20.62 0.00 2.52
192 193 5.885881 ACTAGACTAGCTCGTTGATCAAAG 58.114 41.667 10.35 12.64 0.00 2.77
193 194 5.899120 ACTAGACTAGCTCGTTGATCAAA 57.101 39.130 10.35 0.00 0.00 2.69
194 195 6.346896 TCTACTAGACTAGCTCGTTGATCAA 58.653 40.000 9.52 3.38 0.00 2.57
195 196 5.915175 TCTACTAGACTAGCTCGTTGATCA 58.085 41.667 9.52 0.00 0.00 2.92
196 197 5.407387 CCTCTACTAGACTAGCTCGTTGATC 59.593 48.000 9.52 0.00 0.00 2.92
197 198 5.302360 CCTCTACTAGACTAGCTCGTTGAT 58.698 45.833 9.52 0.00 0.00 2.57
198 199 4.695396 CCTCTACTAGACTAGCTCGTTGA 58.305 47.826 9.52 0.00 0.00 3.18
199 200 3.249080 GCCTCTACTAGACTAGCTCGTTG 59.751 52.174 9.52 0.00 0.00 4.10
200 201 3.135167 AGCCTCTACTAGACTAGCTCGTT 59.865 47.826 9.52 0.00 0.00 3.85
201 202 2.701951 AGCCTCTACTAGACTAGCTCGT 59.298 50.000 9.52 0.00 0.00 4.18
202 203 3.243941 TGAGCCTCTACTAGACTAGCTCG 60.244 52.174 9.52 0.00 46.35 5.03
203 204 4.062991 GTGAGCCTCTACTAGACTAGCTC 58.937 52.174 9.52 10.19 44.25 4.09
204 205 3.714798 AGTGAGCCTCTACTAGACTAGCT 59.285 47.826 9.52 0.35 0.00 3.32
205 206 4.081322 AGTGAGCCTCTACTAGACTAGC 57.919 50.000 9.52 0.00 0.00 3.42
206 207 5.279809 CCCTAGTGAGCCTCTACTAGACTAG 60.280 52.000 22.28 15.56 45.83 2.57
207 208 4.594062 CCCTAGTGAGCCTCTACTAGACTA 59.406 50.000 22.28 9.04 45.83 2.59
208 209 3.393278 CCCTAGTGAGCCTCTACTAGACT 59.607 52.174 22.28 8.49 45.83 3.24
209 210 3.391955 TCCCTAGTGAGCCTCTACTAGAC 59.608 52.174 22.28 2.26 45.83 2.59
210 211 3.391955 GTCCCTAGTGAGCCTCTACTAGA 59.608 52.174 22.28 9.39 45.83 2.43
211 212 3.136809 TGTCCCTAGTGAGCCTCTACTAG 59.863 52.174 17.40 17.40 43.72 2.57
212 213 3.117963 GTGTCCCTAGTGAGCCTCTACTA 60.118 52.174 0.00 0.00 0.00 1.82
213 214 1.923850 TGTCCCTAGTGAGCCTCTACT 59.076 52.381 0.00 0.00 0.00 2.57
214 215 2.025898 GTGTCCCTAGTGAGCCTCTAC 58.974 57.143 0.00 0.00 0.00 2.59
215 216 1.408405 CGTGTCCCTAGTGAGCCTCTA 60.408 57.143 0.00 0.00 0.00 2.43
216 217 0.681564 CGTGTCCCTAGTGAGCCTCT 60.682 60.000 0.00 0.00 0.00 3.69
217 218 1.668101 CCGTGTCCCTAGTGAGCCTC 61.668 65.000 0.00 0.00 0.00 4.70
218 219 1.682684 CCGTGTCCCTAGTGAGCCT 60.683 63.158 0.00 0.00 0.00 4.58
219 220 0.682209 TACCGTGTCCCTAGTGAGCC 60.682 60.000 0.00 0.00 0.00 4.70
220 221 1.400737 ATACCGTGTCCCTAGTGAGC 58.599 55.000 0.00 0.00 0.00 4.26
221 222 5.786264 ATAAATACCGTGTCCCTAGTGAG 57.214 43.478 0.00 0.00 0.00 3.51
222 223 6.549433 AAATAAATACCGTGTCCCTAGTGA 57.451 37.500 0.00 0.00 0.00 3.41
223 224 7.929785 ACATAAATAAATACCGTGTCCCTAGTG 59.070 37.037 0.00 0.00 0.00 2.74
224 225 8.026396 ACATAAATAAATACCGTGTCCCTAGT 57.974 34.615 0.00 0.00 0.00 2.57
227 228 8.098912 GGATACATAAATAAATACCGTGTCCCT 58.901 37.037 0.00 0.00 29.76 4.20
228 229 7.879160 TGGATACATAAATAAATACCGTGTCCC 59.121 37.037 0.00 0.00 46.17 4.46
229 230 8.836268 TGGATACATAAATAAATACCGTGTCC 57.164 34.615 0.00 0.00 46.17 4.02
248 249 9.485591 CGAAAACTTAAATACATGTGTGGATAC 57.514 33.333 9.11 0.00 0.00 2.24
249 250 8.670135 CCGAAAACTTAAATACATGTGTGGATA 58.330 33.333 9.11 0.00 0.00 2.59
250 251 7.175990 ACCGAAAACTTAAATACATGTGTGGAT 59.824 33.333 9.11 0.00 0.00 3.41
251 252 6.487331 ACCGAAAACTTAAATACATGTGTGGA 59.513 34.615 9.11 0.00 0.00 4.02
252 253 6.674066 ACCGAAAACTTAAATACATGTGTGG 58.326 36.000 9.11 0.00 0.00 4.17
253 254 7.356540 TGACCGAAAACTTAAATACATGTGTG 58.643 34.615 9.11 0.00 0.00 3.82
254 255 7.499321 TGACCGAAAACTTAAATACATGTGT 57.501 32.000 9.11 0.00 0.00 3.72
255 256 8.964420 ATTGACCGAAAACTTAAATACATGTG 57.036 30.769 9.11 0.00 0.00 3.21
263 264 9.672086 CAGAATTGTATTGACCGAAAACTTAAA 57.328 29.630 0.00 0.00 0.00 1.52
264 265 8.293867 CCAGAATTGTATTGACCGAAAACTTAA 58.706 33.333 0.00 0.00 0.00 1.85
265 266 7.446013 ACCAGAATTGTATTGACCGAAAACTTA 59.554 33.333 0.00 0.00 0.00 2.24
266 267 6.264518 ACCAGAATTGTATTGACCGAAAACTT 59.735 34.615 0.00 0.00 0.00 2.66
267 268 5.768164 ACCAGAATTGTATTGACCGAAAACT 59.232 36.000 0.00 0.00 0.00 2.66
268 269 6.009115 ACCAGAATTGTATTGACCGAAAAC 57.991 37.500 0.00 0.00 0.00 2.43
269 270 7.608376 TCATACCAGAATTGTATTGACCGAAAA 59.392 33.333 0.00 0.00 0.00 2.29
270 271 7.106890 TCATACCAGAATTGTATTGACCGAAA 58.893 34.615 0.00 0.00 0.00 3.46
271 272 6.645306 TCATACCAGAATTGTATTGACCGAA 58.355 36.000 0.00 0.00 0.00 4.30
272 273 6.228616 TCATACCAGAATTGTATTGACCGA 57.771 37.500 0.00 0.00 0.00 4.69
273 274 6.918892 TTCATACCAGAATTGTATTGACCG 57.081 37.500 0.00 0.00 0.00 4.79
333 334 9.569122 GCCCTAGAGACAATAATAAAATGGTTA 57.431 33.333 0.00 0.00 0.00 2.85
334 335 8.058847 TGCCCTAGAGACAATAATAAAATGGTT 58.941 33.333 0.00 0.00 0.00 3.67
335 336 7.582719 TGCCCTAGAGACAATAATAAAATGGT 58.417 34.615 0.00 0.00 0.00 3.55
336 337 8.641498 ATGCCCTAGAGACAATAATAAAATGG 57.359 34.615 0.00 0.00 0.00 3.16
341 342 9.959721 GGAAATATGCCCTAGAGACAATAATAA 57.040 33.333 0.00 0.00 0.00 1.40
342 343 9.111519 TGGAAATATGCCCTAGAGACAATAATA 57.888 33.333 0.00 0.00 0.00 0.98
343 344 7.988937 TGGAAATATGCCCTAGAGACAATAAT 58.011 34.615 0.00 0.00 0.00 1.28
344 345 7.387265 TGGAAATATGCCCTAGAGACAATAA 57.613 36.000 0.00 0.00 0.00 1.40
345 346 7.237471 TGATGGAAATATGCCCTAGAGACAATA 59.763 37.037 0.00 0.00 0.00 1.90
346 347 5.912149 TGGAAATATGCCCTAGAGACAAT 57.088 39.130 0.00 0.00 0.00 2.71
347 348 5.369404 TGATGGAAATATGCCCTAGAGACAA 59.631 40.000 0.00 0.00 0.00 3.18
348 349 4.907269 TGATGGAAATATGCCCTAGAGACA 59.093 41.667 0.00 0.00 0.00 3.41
349 350 5.221722 TGTGATGGAAATATGCCCTAGAGAC 60.222 44.000 0.00 0.00 0.00 3.36
350 351 4.907269 TGTGATGGAAATATGCCCTAGAGA 59.093 41.667 0.00 0.00 0.00 3.10
351 352 5.233083 TGTGATGGAAATATGCCCTAGAG 57.767 43.478 0.00 0.00 0.00 2.43
352 353 5.645056 TTGTGATGGAAATATGCCCTAGA 57.355 39.130 0.00 0.00 0.00 2.43
353 354 6.263516 CATTGTGATGGAAATATGCCCTAG 57.736 41.667 0.00 0.00 0.00 3.02
367 368 1.097232 ATCGCACCACCATTGTGATG 58.903 50.000 0.00 0.00 45.76 3.07
368 369 1.097232 CATCGCACCACCATTGTGAT 58.903 50.000 0.00 0.00 45.76 3.06
369 370 0.036022 TCATCGCACCACCATTGTGA 59.964 50.000 0.00 0.00 45.76 3.58
370 371 1.097232 ATCATCGCACCACCATTGTG 58.903 50.000 0.00 0.00 42.39 3.33
371 372 1.473677 CAATCATCGCACCACCATTGT 59.526 47.619 0.00 0.00 0.00 2.71
372 373 1.799917 GCAATCATCGCACCACCATTG 60.800 52.381 0.00 0.00 0.00 2.82
373 374 0.457035 GCAATCATCGCACCACCATT 59.543 50.000 0.00 0.00 0.00 3.16
374 375 1.717791 CGCAATCATCGCACCACCAT 61.718 55.000 0.00 0.00 0.00 3.55
375 376 2.397754 CGCAATCATCGCACCACCA 61.398 57.895 0.00 0.00 0.00 4.17
376 377 2.309764 GACGCAATCATCGCACCACC 62.310 60.000 0.00 0.00 0.00 4.61
377 378 1.060937 GACGCAATCATCGCACCAC 59.939 57.895 0.00 0.00 0.00 4.16
378 379 2.451990 CGACGCAATCATCGCACCA 61.452 57.895 0.00 0.00 0.00 4.17
379 380 1.490693 ATCGACGCAATCATCGCACC 61.491 55.000 0.00 0.00 38.24 5.01
380 381 0.382272 CATCGACGCAATCATCGCAC 60.382 55.000 0.00 0.00 38.24 5.34
381 382 1.926490 CATCGACGCAATCATCGCA 59.074 52.632 0.00 0.00 38.24 5.10
382 383 1.437735 GCATCGACGCAATCATCGC 60.438 57.895 0.00 0.00 38.24 4.58
383 384 0.578683 AAGCATCGACGCAATCATCG 59.421 50.000 6.14 0.00 39.72 3.84
384 385 2.156504 CCTAAGCATCGACGCAATCATC 59.843 50.000 6.14 0.00 0.00 2.92
385 386 2.138320 CCTAAGCATCGACGCAATCAT 58.862 47.619 6.14 0.00 0.00 2.45
386 387 1.570813 CCTAAGCATCGACGCAATCA 58.429 50.000 6.14 0.00 0.00 2.57
387 388 0.861837 CCCTAAGCATCGACGCAATC 59.138 55.000 6.14 0.00 0.00 2.67
388 389 0.532862 CCCCTAAGCATCGACGCAAT 60.533 55.000 6.14 0.00 0.00 3.56
389 390 1.153449 CCCCTAAGCATCGACGCAA 60.153 57.895 6.14 0.00 0.00 4.85
390 391 2.499205 CCCCTAAGCATCGACGCA 59.501 61.111 6.14 0.00 0.00 5.24
391 392 2.967615 GCCCCTAAGCATCGACGC 60.968 66.667 0.00 0.00 0.00 5.19
392 393 1.883084 GTGCCCCTAAGCATCGACG 60.883 63.158 0.00 0.00 46.24 5.12
393 394 0.811616 CAGTGCCCCTAAGCATCGAC 60.812 60.000 0.00 0.00 46.24 4.20
394 395 1.522092 CAGTGCCCCTAAGCATCGA 59.478 57.895 0.00 0.00 46.24 3.59
395 396 2.182842 GCAGTGCCCCTAAGCATCG 61.183 63.158 2.85 0.00 46.24 3.84
396 397 1.825622 GGCAGTGCCCCTAAGCATC 60.826 63.158 24.53 0.00 46.24 3.91
397 398 2.276740 GGCAGTGCCCCTAAGCAT 59.723 61.111 24.53 0.00 46.24 3.79
408 409 4.332637 GTTGCAGTGCCGGCAGTG 62.333 66.667 45.70 45.70 46.85 3.66
409 410 4.873810 TGTTGCAGTGCCGGCAGT 62.874 61.111 33.73 32.38 43.05 4.40
410 411 3.332493 GATGTTGCAGTGCCGGCAG 62.332 63.158 33.73 21.35 43.05 4.85
411 412 3.364441 GATGTTGCAGTGCCGGCA 61.364 61.111 29.03 29.03 40.00 5.69
412 413 4.465512 CGATGTTGCAGTGCCGGC 62.466 66.667 22.73 22.73 0.00 6.13
413 414 3.803082 CCGATGTTGCAGTGCCGG 61.803 66.667 13.72 13.90 0.00 6.13
414 415 4.465512 GCCGATGTTGCAGTGCCG 62.466 66.667 13.72 8.23 0.00 5.69
415 416 4.120331 GGCCGATGTTGCAGTGCC 62.120 66.667 13.72 0.00 0.00 5.01
416 417 3.058160 AGGCCGATGTTGCAGTGC 61.058 61.111 8.58 8.58 0.00 4.40
417 418 2.693762 CCAGGCCGATGTTGCAGTG 61.694 63.158 0.00 0.00 0.00 3.66
418 419 2.360350 CCAGGCCGATGTTGCAGT 60.360 61.111 0.00 0.00 0.00 4.40
419 420 3.136123 CCCAGGCCGATGTTGCAG 61.136 66.667 0.00 0.00 0.00 4.41
422 423 4.776322 TCGCCCAGGCCGATGTTG 62.776 66.667 2.37 0.00 37.98 3.33
423 424 4.778143 GTCGCCCAGGCCGATGTT 62.778 66.667 0.00 0.00 37.98 2.71
430 431 4.382320 TGTTACCGTCGCCCAGGC 62.382 66.667 0.00 0.00 37.85 4.85
431 432 1.956629 ATCTGTTACCGTCGCCCAGG 61.957 60.000 0.00 0.00 0.00 4.45
432 433 0.806102 CATCTGTTACCGTCGCCCAG 60.806 60.000 0.00 0.00 0.00 4.45
433 434 1.216977 CATCTGTTACCGTCGCCCA 59.783 57.895 0.00 0.00 0.00 5.36
434 435 0.804933 GTCATCTGTTACCGTCGCCC 60.805 60.000 0.00 0.00 0.00 6.13
435 436 0.172803 AGTCATCTGTTACCGTCGCC 59.827 55.000 0.00 0.00 0.00 5.54
436 437 1.546834 GAGTCATCTGTTACCGTCGC 58.453 55.000 0.00 0.00 0.00 5.19
437 438 1.811428 CGAGTCATCTGTTACCGTCG 58.189 55.000 0.00 0.00 0.00 5.12
438 439 1.546834 GCGAGTCATCTGTTACCGTC 58.453 55.000 0.00 0.00 0.00 4.79
439 440 0.179171 CGCGAGTCATCTGTTACCGT 60.179 55.000 0.00 0.00 0.00 4.83
440 441 0.098200 TCGCGAGTCATCTGTTACCG 59.902 55.000 3.71 0.00 0.00 4.02
441 442 2.493713 ATCGCGAGTCATCTGTTACC 57.506 50.000 16.66 0.00 0.00 2.85
442 443 3.948851 TGTATCGCGAGTCATCTGTTAC 58.051 45.455 16.66 9.31 0.00 2.50
443 444 3.626217 ACTGTATCGCGAGTCATCTGTTA 59.374 43.478 16.66 0.00 0.00 2.41
444 445 2.423892 ACTGTATCGCGAGTCATCTGTT 59.576 45.455 16.66 0.00 0.00 3.16
445 446 2.017782 ACTGTATCGCGAGTCATCTGT 58.982 47.619 16.66 7.77 0.00 3.41
446 447 2.032178 TCACTGTATCGCGAGTCATCTG 59.968 50.000 16.66 13.16 0.00 2.90
447 448 2.289274 CTCACTGTATCGCGAGTCATCT 59.711 50.000 16.66 0.00 0.00 2.90
448 449 2.032302 ACTCACTGTATCGCGAGTCATC 59.968 50.000 16.66 3.47 33.49 2.92
449 450 2.017782 ACTCACTGTATCGCGAGTCAT 58.982 47.619 16.66 0.00 33.49 3.06
450 451 1.450025 ACTCACTGTATCGCGAGTCA 58.550 50.000 16.66 14.87 33.49 3.41
451 452 2.032722 CCTACTCACTGTATCGCGAGTC 60.033 54.545 16.66 10.68 39.39 3.36
452 453 1.941294 CCTACTCACTGTATCGCGAGT 59.059 52.381 16.66 3.49 41.45 4.18
453 454 1.941294 ACCTACTCACTGTATCGCGAG 59.059 52.381 16.66 2.71 0.00 5.03
454 455 1.938577 GACCTACTCACTGTATCGCGA 59.061 52.381 13.09 13.09 0.00 5.87
455 456 1.669265 TGACCTACTCACTGTATCGCG 59.331 52.381 0.00 0.00 0.00 5.87
456 457 3.067721 GTGACCTACTCACTGTATCGC 57.932 52.381 0.00 0.00 45.38 4.58
465 466 1.202348 CAGCATCGTGTGACCTACTCA 59.798 52.381 0.00 0.00 0.00 3.41
466 467 1.914634 CAGCATCGTGTGACCTACTC 58.085 55.000 0.00 0.00 0.00 2.59
467 468 0.108615 GCAGCATCGTGTGACCTACT 60.109 55.000 0.00 0.00 0.00 2.57
468 469 1.413767 CGCAGCATCGTGTGACCTAC 61.414 60.000 0.00 0.00 0.00 3.18
469 470 1.153842 CGCAGCATCGTGTGACCTA 60.154 57.895 0.00 0.00 0.00 3.08
470 471 2.433145 CGCAGCATCGTGTGACCT 60.433 61.111 0.00 0.00 0.00 3.85
471 472 3.490759 CCGCAGCATCGTGTGACC 61.491 66.667 0.00 0.00 0.00 4.02
472 473 4.152625 GCCGCAGCATCGTGTGAC 62.153 66.667 0.00 0.00 39.53 3.67
475 476 3.424639 TATCGCCGCAGCATCGTGT 62.425 57.895 0.00 0.00 39.83 4.49
476 477 2.652079 CTATCGCCGCAGCATCGTG 61.652 63.158 0.00 0.00 39.83 4.35
477 478 2.355126 CTATCGCCGCAGCATCGT 60.355 61.111 0.00 0.00 39.83 3.73
478 479 3.108289 CCTATCGCCGCAGCATCG 61.108 66.667 0.00 0.00 39.83 3.84
479 480 2.740055 CCCTATCGCCGCAGCATC 60.740 66.667 0.00 0.00 39.83 3.91
480 481 4.320456 CCCCTATCGCCGCAGCAT 62.320 66.667 0.00 0.00 39.83 3.79
488 489 4.171103 AACACCCGCCCCTATCGC 62.171 66.667 0.00 0.00 0.00 4.58
489 490 2.203015 CAACACCCGCCCCTATCG 60.203 66.667 0.00 0.00 0.00 2.92
490 491 2.516225 GCAACACCCGCCCCTATC 60.516 66.667 0.00 0.00 0.00 2.08
491 492 2.837031 CTTGCAACACCCGCCCCTAT 62.837 60.000 0.00 0.00 0.00 2.57
492 493 3.561120 CTTGCAACACCCGCCCCTA 62.561 63.158 0.00 0.00 0.00 3.53
493 494 4.974721 CTTGCAACACCCGCCCCT 62.975 66.667 0.00 0.00 0.00 4.79
499 500 3.977244 CGTGGGCTTGCAACACCC 61.977 66.667 21.33 21.33 44.52 4.61
500 501 2.781158 AACGTGGGCTTGCAACACC 61.781 57.895 11.74 9.72 0.00 4.16
501 502 1.588667 CAACGTGGGCTTGCAACAC 60.589 57.895 8.27 8.27 0.00 3.32
502 503 2.780094 CCAACGTGGGCTTGCAACA 61.780 57.895 0.00 0.00 32.67 3.33
503 504 1.805428 ATCCAACGTGGGCTTGCAAC 61.805 55.000 3.23 0.00 38.32 4.17
504 505 1.530419 ATCCAACGTGGGCTTGCAA 60.530 52.632 3.23 0.00 38.32 4.08
505 506 2.115052 ATCCAACGTGGGCTTGCA 59.885 55.556 3.23 0.00 38.32 4.08
506 507 1.805428 AACATCCAACGTGGGCTTGC 61.805 55.000 3.23 0.00 38.32 4.01
507 508 0.039256 CAACATCCAACGTGGGCTTG 60.039 55.000 3.23 7.16 38.32 4.01
508 509 1.805428 GCAACATCCAACGTGGGCTT 61.805 55.000 3.23 0.00 38.32 4.35
509 510 2.268076 GCAACATCCAACGTGGGCT 61.268 57.895 3.23 0.00 38.32 5.19
510 511 2.081425 TTGCAACATCCAACGTGGGC 62.081 55.000 3.23 0.14 38.32 5.36
511 512 0.039256 CTTGCAACATCCAACGTGGG 60.039 55.000 1.09 1.09 38.32 4.61
512 513 0.664166 GCTTGCAACATCCAACGTGG 60.664 55.000 0.00 0.00 39.43 4.94
513 514 0.664166 GGCTTGCAACATCCAACGTG 60.664 55.000 0.00 0.00 0.00 4.49
514 515 1.659794 GGCTTGCAACATCCAACGT 59.340 52.632 0.00 0.00 0.00 3.99
515 516 1.442520 CGGCTTGCAACATCCAACG 60.443 57.895 0.00 0.00 0.00 4.10
516 517 0.527565 ATCGGCTTGCAACATCCAAC 59.472 50.000 0.00 0.00 0.00 3.77
517 518 0.810648 GATCGGCTTGCAACATCCAA 59.189 50.000 0.00 0.00 0.00 3.53
518 519 1.368345 CGATCGGCTTGCAACATCCA 61.368 55.000 7.38 0.00 0.00 3.41
519 520 1.353103 CGATCGGCTTGCAACATCC 59.647 57.895 7.38 0.00 0.00 3.51
520 521 1.297893 GCGATCGGCTTGCAACATC 60.298 57.895 18.30 0.00 39.11 3.06
521 522 2.764314 GGCGATCGGCTTGCAACAT 61.764 57.895 31.96 0.00 42.94 2.71
522 523 3.430862 GGCGATCGGCTTGCAACA 61.431 61.111 31.96 0.00 42.94 3.33
523 524 4.520846 CGGCGATCGGCTTGCAAC 62.521 66.667 34.57 8.25 42.94 4.17
528 529 3.833645 TAGTGCGGCGATCGGCTT 61.834 61.111 34.57 20.93 42.94 4.35
529 530 4.570663 GTAGTGCGGCGATCGGCT 62.571 66.667 34.57 20.99 42.94 5.52
533 534 4.865761 TGCGGTAGTGCGGCGATC 62.866 66.667 12.98 1.66 45.08 3.69
534 535 4.444838 TTGCGGTAGTGCGGCGAT 62.445 61.111 12.98 0.00 45.08 4.58
537 538 4.752879 TCCTTGCGGTAGTGCGGC 62.753 66.667 3.76 3.76 42.84 6.53
538 539 2.813908 GTCCTTGCGGTAGTGCGG 60.814 66.667 0.00 0.00 37.81 5.69
539 540 3.179265 CGTCCTTGCGGTAGTGCG 61.179 66.667 0.00 0.00 37.81 5.34
540 541 2.813908 CCGTCCTTGCGGTAGTGC 60.814 66.667 0.00 0.00 46.11 4.40
558 559 3.540014 CTCTTGCAGCGTCGCTCG 61.540 66.667 18.76 14.00 36.40 5.03
559 560 3.184683 CCTCTTGCAGCGTCGCTC 61.185 66.667 18.76 12.82 36.40 5.03
560 561 4.749310 CCCTCTTGCAGCGTCGCT 62.749 66.667 15.47 15.47 40.77 4.93
562 563 2.811317 GACCCTCTTGCAGCGTCG 60.811 66.667 0.00 0.00 0.00 5.12
563 564 2.811317 CGACCCTCTTGCAGCGTC 60.811 66.667 0.00 0.00 0.00 5.19
565 566 4.749310 AGCGACCCTCTTGCAGCG 62.749 66.667 0.00 0.00 0.00 5.18
566 567 3.123620 CAGCGACCCTCTTGCAGC 61.124 66.667 0.00 0.00 0.00 5.25
567 568 2.435586 CCAGCGACCCTCTTGCAG 60.436 66.667 0.00 0.00 0.00 4.41
568 569 4.020617 CCCAGCGACCCTCTTGCA 62.021 66.667 0.00 0.00 0.00 4.08
588 589 3.371063 CTGGCTTGCAGCACCCTG 61.371 66.667 11.59 7.95 44.75 4.45
589 590 3.894638 ACTGGCTTGCAGCACCCT 61.895 61.111 11.59 0.00 44.75 4.34
590 591 3.677648 CACTGGCTTGCAGCACCC 61.678 66.667 0.00 0.00 44.75 4.61
591 592 4.353437 GCACTGGCTTGCAGCACC 62.353 66.667 0.00 0.00 44.75 5.01
592 593 4.695231 CGCACTGGCTTGCAGCAC 62.695 66.667 11.40 0.00 44.75 4.40
593 594 4.933563 TCGCACTGGCTTGCAGCA 62.934 61.111 11.40 0.00 44.75 4.41
594 595 4.099170 CTCGCACTGGCTTGCAGC 62.099 66.667 11.40 0.11 43.15 5.25
595 596 2.667536 ACTCGCACTGGCTTGCAG 60.668 61.111 11.40 9.71 43.15 4.41
596 597 2.974148 CACTCGCACTGGCTTGCA 60.974 61.111 11.40 0.00 43.15 4.08
597 598 4.395583 GCACTCGCACTGGCTTGC 62.396 66.667 1.98 1.98 39.28 4.01
598 599 3.730761 GGCACTCGCACTGGCTTG 61.731 66.667 0.00 0.00 41.24 4.01
599 600 4.254709 TGGCACTCGCACTGGCTT 62.255 61.111 0.00 0.00 41.24 4.35
600 601 4.694233 CTGGCACTCGCACTGGCT 62.694 66.667 0.00 0.00 41.24 4.75
602 603 4.694233 AGCTGGCACTCGCACTGG 62.694 66.667 0.00 0.00 41.24 4.00
603 604 3.420606 CAGCTGGCACTCGCACTG 61.421 66.667 5.57 0.00 41.24 3.66
625 626 4.008933 ACCTCTGTGTGGCCGCTC 62.009 66.667 18.96 15.03 0.00 5.03
626 627 4.320456 CACCTCTGTGTGGCCGCT 62.320 66.667 18.96 0.00 37.72 5.52
628 629 4.320456 AGCACCTCTGTGTGGCCG 62.320 66.667 0.00 0.00 44.65 6.13
629 630 2.670934 CAGCACCTCTGTGTGGCC 60.671 66.667 0.00 0.00 44.65 5.36
637 638 0.908656 ATCAGCCTCACAGCACCTCT 60.909 55.000 0.00 0.00 34.23 3.69
638 639 0.461693 GATCAGCCTCACAGCACCTC 60.462 60.000 0.00 0.00 34.23 3.85
639 640 1.196766 TGATCAGCCTCACAGCACCT 61.197 55.000 0.00 0.00 34.23 4.00
640 641 1.023513 GTGATCAGCCTCACAGCACC 61.024 60.000 0.00 0.00 44.03 5.01
641 642 1.357258 CGTGATCAGCCTCACAGCAC 61.357 60.000 0.00 0.00 44.69 4.40
642 643 1.079612 CGTGATCAGCCTCACAGCA 60.080 57.895 0.00 0.00 44.69 4.41
643 644 1.812922 CCGTGATCAGCCTCACAGC 60.813 63.158 0.00 0.00 44.69 4.40
644 645 0.459237 GTCCGTGATCAGCCTCACAG 60.459 60.000 0.00 1.74 44.69 3.66
645 646 0.900182 AGTCCGTGATCAGCCTCACA 60.900 55.000 0.00 0.00 44.69 3.58
646 647 1.103803 TAGTCCGTGATCAGCCTCAC 58.896 55.000 0.00 2.42 41.73 3.51
647 648 1.103803 GTAGTCCGTGATCAGCCTCA 58.896 55.000 0.00 0.00 0.00 3.86
648 649 0.386113 GGTAGTCCGTGATCAGCCTC 59.614 60.000 0.00 0.00 0.00 4.70
649 650 2.506065 GGTAGTCCGTGATCAGCCT 58.494 57.895 0.00 0.00 0.00 4.58
660 661 2.022934 AGCAAGTACTAGCGGTAGTCC 58.977 52.381 29.09 19.18 40.23 3.85
661 662 2.422832 ACAGCAAGTACTAGCGGTAGTC 59.577 50.000 29.09 19.82 40.23 2.59
662 663 2.163815 CACAGCAAGTACTAGCGGTAGT 59.836 50.000 28.36 28.36 42.49 2.73
663 664 2.422479 TCACAGCAAGTACTAGCGGTAG 59.578 50.000 19.71 19.71 37.06 3.18
664 665 2.422479 CTCACAGCAAGTACTAGCGGTA 59.578 50.000 0.00 0.00 37.06 4.02
665 666 1.202582 CTCACAGCAAGTACTAGCGGT 59.797 52.381 0.00 0.00 39.71 5.68
666 667 1.914634 CTCACAGCAAGTACTAGCGG 58.085 55.000 0.00 0.00 35.48 5.52
667 668 1.135257 AGCTCACAGCAAGTACTAGCG 60.135 52.381 0.00 0.00 45.56 4.26
668 669 2.094494 TGAGCTCACAGCAAGTACTAGC 60.094 50.000 13.74 0.00 45.56 3.42
669 670 3.857549 TGAGCTCACAGCAAGTACTAG 57.142 47.619 13.74 0.00 45.56 2.57
670 671 3.611766 CGTTGAGCTCACAGCAAGTACTA 60.612 47.826 18.03 0.00 45.56 1.82
671 672 2.760374 GTTGAGCTCACAGCAAGTACT 58.240 47.619 18.03 0.00 45.56 2.73
672 673 1.457303 CGTTGAGCTCACAGCAAGTAC 59.543 52.381 18.03 8.41 45.56 2.73
673 674 1.783284 CGTTGAGCTCACAGCAAGTA 58.217 50.000 18.03 0.00 45.56 2.24
674 675 1.502163 GCGTTGAGCTCACAGCAAGT 61.502 55.000 27.91 0.00 45.56 3.16
675 676 1.206072 GCGTTGAGCTCACAGCAAG 59.794 57.895 27.91 14.14 45.56 4.01
676 677 2.597713 CGCGTTGAGCTCACAGCAA 61.598 57.895 30.17 11.37 45.56 3.91
677 678 3.037833 CGCGTTGAGCTCACAGCA 61.038 61.111 30.17 11.71 45.56 4.41
678 679 3.782244 CCGCGTTGAGCTCACAGC 61.782 66.667 24.84 24.84 45.59 4.40
679 680 2.049156 TCCGCGTTGAGCTCACAG 60.049 61.111 18.03 14.42 45.59 3.66
680 681 2.355837 GTCCGCGTTGAGCTCACA 60.356 61.111 18.03 5.15 45.59 3.58
681 682 3.470567 CGTCCGCGTTGAGCTCAC 61.471 66.667 18.03 10.90 45.59 3.51
693 694 3.812019 AGCCTCGTAGCACGTCCG 61.812 66.667 8.22 0.00 43.14 4.79
694 695 2.202623 CAGCCTCGTAGCACGTCC 60.203 66.667 8.22 0.00 43.14 4.79
695 696 2.881352 GCAGCCTCGTAGCACGTC 60.881 66.667 8.22 1.37 43.14 4.34
696 697 3.680786 TGCAGCCTCGTAGCACGT 61.681 61.111 8.22 0.00 43.14 4.49
699 700 2.997315 AGGTGCAGCCTCGTAGCA 60.997 61.111 13.29 0.00 46.96 3.49
707 708 2.046507 CCACAGAGAGGTGCAGCC 60.047 66.667 13.29 4.65 37.46 4.85
708 709 2.046507 CCCACAGAGAGGTGCAGC 60.047 66.667 8.11 8.11 37.46 5.25
709 710 0.604780 CAACCCACAGAGAGGTGCAG 60.605 60.000 0.00 0.00 36.19 4.41
710 711 1.344953 ACAACCCACAGAGAGGTGCA 61.345 55.000 0.00 0.00 36.19 4.57
711 712 0.685097 TACAACCCACAGAGAGGTGC 59.315 55.000 0.00 0.00 36.19 5.01
712 713 2.550208 GGTTACAACCCACAGAGAGGTG 60.550 54.545 0.00 0.00 43.43 4.00
713 714 1.697982 GGTTACAACCCACAGAGAGGT 59.302 52.381 0.00 0.00 43.43 3.85
714 715 2.474410 GGTTACAACCCACAGAGAGG 57.526 55.000 0.00 0.00 43.43 3.69
725 726 3.051479 CGCCCCGGTGGTTACAAC 61.051 66.667 0.00 0.00 36.04 3.32
726 727 4.332591 CCGCCCCGGTGGTTACAA 62.333 66.667 5.08 0.00 42.73 2.41
736 737 3.616721 CCACCTATCTCCGCCCCG 61.617 72.222 0.00 0.00 0.00 5.73
737 738 3.242291 CCCACCTATCTCCGCCCC 61.242 72.222 0.00 0.00 0.00 5.80
738 739 1.128188 ATTCCCACCTATCTCCGCCC 61.128 60.000 0.00 0.00 0.00 6.13
739 740 0.035458 CATTCCCACCTATCTCCGCC 59.965 60.000 0.00 0.00 0.00 6.13
740 741 1.048601 TCATTCCCACCTATCTCCGC 58.951 55.000 0.00 0.00 0.00 5.54
741 742 1.344763 GGTCATTCCCACCTATCTCCG 59.655 57.143 0.00 0.00 0.00 4.63
742 743 2.370189 CAGGTCATTCCCACCTATCTCC 59.630 54.545 0.00 0.00 42.85 3.71
743 744 3.309296 TCAGGTCATTCCCACCTATCTC 58.691 50.000 0.00 0.00 42.85 2.75
744 745 3.312890 CTCAGGTCATTCCCACCTATCT 58.687 50.000 0.00 0.00 42.85 1.98
745 746 2.224402 GCTCAGGTCATTCCCACCTATC 60.224 54.545 0.00 0.00 42.85 2.08
746 747 1.771255 GCTCAGGTCATTCCCACCTAT 59.229 52.381 0.00 0.00 42.85 2.57
747 748 1.204146 GCTCAGGTCATTCCCACCTA 58.796 55.000 0.00 0.00 42.85 3.08
748 749 1.903877 CGCTCAGGTCATTCCCACCT 61.904 60.000 0.00 0.00 45.89 4.00
749 750 1.450312 CGCTCAGGTCATTCCCACC 60.450 63.158 0.00 0.00 36.75 4.61
750 751 2.109126 GCGCTCAGGTCATTCCCAC 61.109 63.158 0.00 0.00 36.75 4.61
751 752 1.913951 ATGCGCTCAGGTCATTCCCA 61.914 55.000 9.73 0.00 36.75 4.37
752 753 1.153086 ATGCGCTCAGGTCATTCCC 60.153 57.895 9.73 0.00 36.75 3.97
753 754 1.442526 CCATGCGCTCAGGTCATTCC 61.443 60.000 9.73 0.00 0.00 3.01
754 755 0.462581 TCCATGCGCTCAGGTCATTC 60.463 55.000 9.73 0.00 0.00 2.67
755 756 0.182061 ATCCATGCGCTCAGGTCATT 59.818 50.000 9.73 0.00 0.00 2.57
756 757 0.534427 CATCCATGCGCTCAGGTCAT 60.534 55.000 9.73 0.00 0.00 3.06
757 758 1.153309 CATCCATGCGCTCAGGTCA 60.153 57.895 9.73 0.00 0.00 4.02
758 759 1.890979 CCATCCATGCGCTCAGGTC 60.891 63.158 9.73 0.00 0.00 3.85
759 760 2.191375 CCATCCATGCGCTCAGGT 59.809 61.111 9.73 0.00 0.00 4.00
760 761 3.285215 GCCATCCATGCGCTCAGG 61.285 66.667 9.73 8.07 0.00 3.86
761 762 2.203167 AGCCATCCATGCGCTCAG 60.203 61.111 9.73 0.00 31.63 3.35
762 763 2.515290 CAGCCATCCATGCGCTCA 60.515 61.111 9.73 0.00 33.87 4.26
763 764 2.515523 ACAGCCATCCATGCGCTC 60.516 61.111 9.73 0.00 33.87 5.03
764 765 2.515523 GACAGCCATCCATGCGCT 60.516 61.111 9.73 0.00 35.61 5.92
765 766 3.945434 CGACAGCCATCCATGCGC 61.945 66.667 0.00 0.00 0.00 6.09
766 767 2.202919 TCGACAGCCATCCATGCG 60.203 61.111 0.00 0.00 0.00 4.73
767 768 1.153289 ACTCGACAGCCATCCATGC 60.153 57.895 0.00 0.00 0.00 4.06
768 769 0.873312 CGACTCGACAGCCATCCATG 60.873 60.000 0.00 0.00 0.00 3.66
771 772 3.197614 TCGACTCGACAGCCATCC 58.802 61.111 0.00 0.00 0.00 3.51
818 820 7.129457 TGAGATGCTAGGTTTTGATCTATGT 57.871 36.000 0.00 0.00 0.00 2.29
820 822 7.877097 GTGATGAGATGCTAGGTTTTGATCTAT 59.123 37.037 0.00 0.00 0.00 1.98
824 826 5.748402 TGTGATGAGATGCTAGGTTTTGAT 58.252 37.500 0.00 0.00 0.00 2.57
825 827 5.164620 TGTGATGAGATGCTAGGTTTTGA 57.835 39.130 0.00 0.00 0.00 2.69
903 915 3.471806 GCCGGGAGAGGGAGTTCC 61.472 72.222 2.18 0.00 0.00 3.62
1362 1374 3.998672 GGGACGACCTTGACGCCA 61.999 66.667 3.44 0.00 35.85 5.69
1392 1404 3.636231 CAGGGGGCGTGGAAGACA 61.636 66.667 0.00 0.00 0.00 3.41
1511 1523 2.716244 CGATCTCCTGGTCGTCGG 59.284 66.667 0.00 0.00 33.42 4.79
1691 1703 4.500837 GCACAATCACTCTGTACTATCACG 59.499 45.833 0.00 0.00 0.00 4.35
1793 1859 7.840931 AGAAATAAGGTTCCTAGCCATTTTTG 58.159 34.615 0.00 0.00 0.00 2.44
1842 1915 4.613622 CGGTGAAATAGACCAGCAAACTTG 60.614 45.833 0.00 0.00 32.45 3.16
1975 2057 6.940714 AGCAACTACGTGTACTTTTAACAAG 58.059 36.000 0.00 0.00 33.31 3.16
1984 2066 7.601130 TCAAAATCATTAGCAACTACGTGTACT 59.399 33.333 0.00 0.00 0.00 2.73
1988 2070 6.831769 ACTCAAAATCATTAGCAACTACGTG 58.168 36.000 0.00 0.00 0.00 4.49
2003 2186 6.851330 GCCGTTGCTTATACATACTCAAAATC 59.149 38.462 0.00 0.00 33.53 2.17
2021 2204 1.579429 CAACTAAGGTGGCCGTTGC 59.421 57.895 6.08 0.00 31.62 4.17
2027 2210 1.826385 ATGTCTGCAACTAAGGTGGC 58.174 50.000 0.00 0.00 42.48 5.01
2087 2270 2.672961 TGCTGTCTATGCCTGTACAC 57.327 50.000 0.00 0.00 0.00 2.90
2115 2298 5.160641 CAAGGAGAAGACTTCTTTCTCGAG 58.839 45.833 18.66 5.93 39.71 4.04
2117 2300 4.877282 ACAAGGAGAAGACTTCTTTCTCG 58.123 43.478 18.66 11.33 39.71 4.04
2131 2314 2.305927 CTCCCTTTAGCCAACAAGGAGA 59.694 50.000 0.00 0.00 42.11 3.71
2179 2364 7.801716 TTTATATTCTGAAAATGGAGGGTCG 57.198 36.000 0.00 0.00 0.00 4.79
2524 2717 6.937436 AGTGACGAGGTTTTAGTTCAAAAT 57.063 33.333 0.00 0.00 38.36 1.82
2525 2718 6.149807 ACAAGTGACGAGGTTTTAGTTCAAAA 59.850 34.615 0.00 0.00 33.66 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.