Multiple sequence alignment - TraesCS1D01G209300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G209300 chr1D 100.000 3856 0 0 1 3856 295280392 295284247 0.000000e+00 7121
1 TraesCS1D01G209300 chr1D 95.930 172 7 0 3685 3856 110983422 110983251 2.930000e-71 279
2 TraesCS1D01G209300 chr1D 96.471 170 5 1 3687 3856 157783745 157783577 2.930000e-71 279
3 TraesCS1D01G209300 chr1D 95.930 172 3 1 3687 3854 446803029 446802858 3.790000e-70 276
4 TraesCS1D01G209300 chr1A 96.526 1353 35 10 2042 3392 368383569 368384911 0.000000e+00 2228
5 TraesCS1D01G209300 chr1A 96.364 275 9 1 3414 3687 368384895 368385169 5.870000e-123 451
6 TraesCS1D01G209300 chr1A 93.407 182 12 0 3675 3856 370888985 370889166 1.770000e-68 270
7 TraesCS1D01G209300 chr1B 91.949 1416 68 18 31 1423 396605142 396606534 0.000000e+00 1941
8 TraesCS1D01G209300 chr1B 91.605 1358 70 23 2343 3688 396607468 396608793 0.000000e+00 1836
9 TraesCS1D01G209300 chr1B 87.375 499 30 15 1551 2041 396606617 396607090 3.390000e-150 542
10 TraesCS1D01G209300 chr1B 91.694 301 19 4 2041 2340 396607131 396607426 2.770000e-111 412
11 TraesCS1D01G209300 chr7D 87.778 270 29 4 414 681 58622661 58622928 2.890000e-81 313
12 TraesCS1D01G209300 chr7D 96.703 182 6 0 3675 3856 219883184 219883365 1.740000e-78 303
13 TraesCS1D01G209300 chr7A 87.500 272 28 6 414 682 62883483 62883751 3.740000e-80 309
14 TraesCS1D01G209300 chr7A 84.815 270 37 4 414 681 81643506 81643239 6.350000e-68 268
15 TraesCS1D01G209300 chr5A 87.132 272 26 9 414 681 641056752 641056486 2.250000e-77 300
16 TraesCS1D01G209300 chr5A 85.978 271 33 5 413 681 649710291 649710558 6.310000e-73 285
17 TraesCS1D01G209300 chr5B 86.765 272 31 5 413 682 657596047 657596315 8.100000e-77 298
18 TraesCS1D01G209300 chr5B 86.716 271 31 5 414 682 650165653 650165386 2.910000e-76 296
19 TraesCS1D01G209300 chr5D 94.915 177 9 0 3680 3856 536387532 536387356 1.060000e-70 278
20 TraesCS1D01G209300 chr2A 95.882 170 7 0 3687 3856 169626081 169625912 3.790000e-70 276
21 TraesCS1D01G209300 chr4D 95.882 170 6 1 3687 3856 305422289 305422457 1.360000e-69 274
22 TraesCS1D01G209300 chr6D 84.982 273 36 5 412 682 434450086 434450355 4.910000e-69 272
23 TraesCS1D01G209300 chr6A 93.407 182 12 0 3675 3856 55294837 55294656 1.770000e-68 270
24 TraesCS1D01G209300 chr2B 85.590 229 22 8 3469 3688 634432327 634432553 3.000000e-56 230
25 TraesCS1D01G209300 chr2B 85.590 229 22 8 3469 3688 634512639 634512865 3.000000e-56 230
26 TraesCS1D01G209300 chr2D 81.343 134 22 3 3557 3688 606385791 606385923 5.270000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G209300 chr1D 295280392 295284247 3855 False 7121.00 7121 100.00000 1 3856 1 chr1D.!!$F1 3855
1 TraesCS1D01G209300 chr1A 368383569 368385169 1600 False 1339.50 2228 96.44500 2042 3687 2 chr1A.!!$F2 1645
2 TraesCS1D01G209300 chr1B 396605142 396608793 3651 False 1182.75 1941 90.65575 31 3688 4 chr1B.!!$F1 3657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
478 491 0.105039 GCTACATAAGGAGCGGCACT 59.895 55.0 1.45 0.0 0.00 4.40 F
1317 1341 0.179045 CCAGGTAAAGATCCCCGCAG 60.179 60.0 0.00 0.0 0.00 5.18 F
1467 1491 0.390603 TTTCTACGGGCATGTGGTCG 60.391 55.0 0.00 0.0 0.00 4.79 F
1503 1527 0.443869 ATGCAATCGTCTTGTGCGAC 59.556 50.0 0.00 0.0 41.27 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1462 1486 0.036164 CTCAATTGTCACCCCGACCA 59.964 55.000 5.13 0.00 44.71 4.02 R
2194 2290 1.336887 GGTTAAGTCTGCGAGCTCACA 60.337 52.381 15.40 9.67 0.00 3.58 R
2290 2386 3.318557 TGCTCAAGACATGTTTTGCATCA 59.681 39.130 21.19 15.45 35.19 3.07 R
2947 3082 3.909776 ATGGATTGTTATGCATCAGCG 57.090 42.857 0.19 0.00 46.23 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.346049 CTCTCCCGAGCTGGAAGA 57.654 61.111 0.00 0.00 42.00 2.87
18 19 2.114638 CTCTCCCGAGCTGGAAGAG 58.885 63.158 11.65 11.65 42.00 2.85
26 27 4.613929 GCTGGAAGAGCTGACCTG 57.386 61.111 0.00 0.00 45.21 4.00
27 28 1.744741 GCTGGAAGAGCTGACCTGC 60.745 63.158 13.39 13.39 45.21 4.85
28 29 1.447489 CTGGAAGAGCTGACCTGCG 60.447 63.158 0.00 0.00 38.13 5.18
29 30 2.125350 GGAAGAGCTGACCTGCGG 60.125 66.667 0.00 0.00 38.13 5.69
53 54 4.059459 GTGAGCCGTTGACGCACG 62.059 66.667 0.00 0.00 40.02 5.34
55 56 3.470567 GAGCCGTTGACGCACGAG 61.471 66.667 0.00 0.00 43.15 4.18
97 110 4.436998 CCTCGACCGGCGCTTCTT 62.437 66.667 7.64 0.00 40.61 2.52
99 112 4.430765 TCGACCGGCGCTTCTTCC 62.431 66.667 7.64 0.00 40.61 3.46
270 283 2.951458 GGCGACGGAAAAGGTTGG 59.049 61.111 0.00 0.00 0.00 3.77
273 286 2.951458 GACGGAAAAGGTTGGCGG 59.049 61.111 0.00 0.00 0.00 6.13
341 354 2.042944 GGGCCTGGGGAAACATCC 60.043 66.667 0.84 0.00 0.00 3.51
478 491 0.105039 GCTACATAAGGAGCGGCACT 59.895 55.000 1.45 0.00 0.00 4.40
479 492 1.858091 CTACATAAGGAGCGGCACTG 58.142 55.000 1.45 0.00 0.00 3.66
480 493 0.179084 TACATAAGGAGCGGCACTGC 60.179 55.000 1.45 0.00 36.89 4.40
481 494 2.182842 CATAAGGAGCGGCACTGCC 61.183 63.158 10.35 10.35 46.75 4.85
506 520 5.346822 CACGTTGTAACATACTTACCTGGAC 59.653 44.000 0.00 0.00 0.00 4.02
551 565 1.153168 CGTGGCCTAGGTCAATGGG 60.153 63.158 19.95 4.03 0.00 4.00
593 607 1.140312 GTTGGCCTATCATCTCCCCA 58.860 55.000 3.32 0.00 0.00 4.96
619 633 3.367025 GGGAGAGTGAACGTCGTAATTTG 59.633 47.826 0.00 0.00 0.00 2.32
631 645 2.502538 TCGTAATTTGTGGTAGAGGGGG 59.497 50.000 0.00 0.00 0.00 5.40
634 648 4.681512 CGTAATTTGTGGTAGAGGGGGTAC 60.682 50.000 0.00 0.00 0.00 3.34
639 653 2.054453 GGTAGAGGGGGTACGCGTT 61.054 63.158 20.78 0.00 44.67 4.84
723 737 6.348868 GCAGTTTATTCTTGAGGTCTGAAAGG 60.349 42.308 0.00 0.00 0.00 3.11
725 739 6.937465 AGTTTATTCTTGAGGTCTGAAAGGTC 59.063 38.462 0.00 0.00 0.00 3.85
734 748 3.916989 AGGTCTGAAAGGTCCCTGTAAAT 59.083 43.478 0.00 0.00 0.00 1.40
738 752 6.294564 GGTCTGAAAGGTCCCTGTAAATTTTC 60.295 42.308 0.00 0.00 0.00 2.29
762 776 8.110860 TCATTTTCATCCTTTAGACCTTGTTC 57.889 34.615 0.00 0.00 0.00 3.18
766 780 6.295719 TCATCCTTTAGACCTTGTTCCTAC 57.704 41.667 0.00 0.00 0.00 3.18
769 783 4.219288 TCCTTTAGACCTTGTTCCTACGAC 59.781 45.833 0.00 0.00 0.00 4.34
770 784 4.492611 CTTTAGACCTTGTTCCTACGACC 58.507 47.826 0.00 0.00 0.00 4.79
771 785 1.264295 AGACCTTGTTCCTACGACCC 58.736 55.000 0.00 0.00 0.00 4.46
784 798 6.057321 TCCTACGACCCACAATTTATCTTT 57.943 37.500 0.00 0.00 0.00 2.52
785 799 5.878116 TCCTACGACCCACAATTTATCTTTG 59.122 40.000 0.00 0.00 0.00 2.77
794 808 7.122650 ACCCACAATTTATCTTTGTAGTCCATG 59.877 37.037 0.00 0.00 35.61 3.66
795 809 7.339212 CCCACAATTTATCTTTGTAGTCCATGA 59.661 37.037 0.00 0.00 35.61 3.07
796 810 8.400947 CCACAATTTATCTTTGTAGTCCATGAG 58.599 37.037 0.00 0.00 35.61 2.90
816 830 9.224267 CCATGAGGAGGTATTATTTCTGTATTG 57.776 37.037 0.00 0.00 36.89 1.90
843 857 2.254152 TCATTGGAGACCCTACAGCT 57.746 50.000 0.00 0.00 0.00 4.24
877 891 9.467258 TTTTCTCTTTCTTTTCATTGCATACAG 57.533 29.630 0.00 0.00 0.00 2.74
878 892 7.984422 TCTCTTTCTTTTCATTGCATACAGA 57.016 32.000 0.00 0.00 0.00 3.41
879 893 8.394971 TCTCTTTCTTTTCATTGCATACAGAA 57.605 30.769 0.00 0.00 0.00 3.02
880 894 8.849168 TCTCTTTCTTTTCATTGCATACAGAAA 58.151 29.630 0.00 0.00 0.00 2.52
881 895 9.125906 CTCTTTCTTTTCATTGCATACAGAAAG 57.874 33.333 17.10 17.10 43.59 2.62
882 896 8.632679 TCTTTCTTTTCATTGCATACAGAAAGT 58.367 29.630 19.82 0.00 43.10 2.66
883 897 9.897744 CTTTCTTTTCATTGCATACAGAAAGTA 57.102 29.630 15.96 5.10 40.03 2.24
884 898 9.897744 TTTCTTTTCATTGCATACAGAAAGTAG 57.102 29.630 0.00 0.00 35.85 2.57
885 899 8.846943 TCTTTTCATTGCATACAGAAAGTAGA 57.153 30.769 0.00 0.00 35.85 2.59
886 900 9.283768 TCTTTTCATTGCATACAGAAAGTAGAA 57.716 29.630 0.00 0.00 35.85 2.10
903 917 7.923414 AAGTAGAATTAAGGTGCGAATTTCT 57.077 32.000 0.00 0.00 0.00 2.52
941 962 8.814038 ATTCTGCAGAAATATTTAGGTCTTGT 57.186 30.769 31.55 7.69 37.61 3.16
942 963 8.635765 TTCTGCAGAAATATTTAGGTCTTGTT 57.364 30.769 26.61 0.00 0.00 2.83
943 964 8.044060 TCTGCAGAAATATTTAGGTCTTGTTG 57.956 34.615 15.67 0.00 0.00 3.33
1035 1057 1.586042 GTACGTATCGGCGGCGAAA 60.586 57.895 37.73 17.51 35.98 3.46
1092 1115 1.162698 TCGACGTCAGGTAACAGGAG 58.837 55.000 17.16 0.00 41.41 3.69
1140 1163 1.969064 CACCGTGCCGATTTGGGAA 60.969 57.895 0.00 0.00 41.26 3.97
1147 1170 0.740737 GCCGATTTGGGAACTGATGG 59.259 55.000 0.00 0.00 38.63 3.51
1151 1174 2.415893 CGATTTGGGAACTGATGGTTGC 60.416 50.000 0.00 0.00 44.02 4.17
1153 1176 1.909700 TTGGGAACTGATGGTTGCTC 58.090 50.000 0.00 0.00 44.16 4.26
1157 1180 2.489722 GGGAACTGATGGTTGCTCTTTC 59.510 50.000 0.00 0.00 44.16 2.62
1184 1208 3.091545 GGATGAGGAGAGGAGCTATCAG 58.908 54.545 0.00 0.00 0.00 2.90
1316 1340 1.912220 CCAGGTAAAGATCCCCGCA 59.088 57.895 0.00 0.00 0.00 5.69
1317 1341 0.179045 CCAGGTAAAGATCCCCGCAG 60.179 60.000 0.00 0.00 0.00 5.18
1332 1356 0.812014 CGCAGCCTCTCGTCTCTAGA 60.812 60.000 0.00 0.00 0.00 2.43
1340 1364 3.759618 CCTCTCGTCTCTAGAACCAGTTT 59.240 47.826 0.00 0.00 0.00 2.66
1401 1425 3.629855 GGAGATCAGATTCTCGACACAGA 59.370 47.826 0.00 0.00 42.57 3.41
1402 1426 4.497340 GGAGATCAGATTCTCGACACAGAC 60.497 50.000 0.00 0.00 42.57 3.51
1405 1429 2.884639 TCAGATTCTCGACACAGACACA 59.115 45.455 0.00 0.00 0.00 3.72
1423 1447 3.121030 GCACTGCGCAATCGACCT 61.121 61.111 13.05 0.00 41.79 3.85
1424 1448 3.084579 CACTGCGCAATCGACCTC 58.915 61.111 13.05 0.00 38.10 3.85
1426 1450 3.918220 CTGCGCAATCGACCTCGC 61.918 66.667 13.05 16.75 46.78 5.03
1432 1456 3.179265 AATCGACCTCGCGCGTTG 61.179 61.111 30.98 23.18 39.60 4.10
1434 1458 3.909258 ATCGACCTCGCGCGTTGTT 62.909 57.895 30.98 12.63 39.60 2.83
1437 1461 2.357034 ACCTCGCGCGTTGTTGAT 60.357 55.556 30.98 6.66 0.00 2.57
1438 1462 1.897398 GACCTCGCGCGTTGTTGATT 61.897 55.000 30.98 6.40 0.00 2.57
1439 1463 1.225745 CCTCGCGCGTTGTTGATTC 60.226 57.895 30.98 0.00 0.00 2.52
1440 1464 1.491127 CTCGCGCGTTGTTGATTCA 59.509 52.632 30.98 4.84 0.00 2.57
1441 1465 0.785708 CTCGCGCGTTGTTGATTCAC 60.786 55.000 30.98 0.00 0.00 3.18
1442 1466 1.204062 CGCGCGTTGTTGATTCACT 59.796 52.632 24.19 0.00 0.00 3.41
1443 1467 0.436913 CGCGCGTTGTTGATTCACTA 59.563 50.000 24.19 0.00 0.00 2.74
1444 1468 1.782023 CGCGCGTTGTTGATTCACTAC 60.782 52.381 24.19 0.00 0.00 2.73
1445 1469 1.459592 GCGCGTTGTTGATTCACTACT 59.540 47.619 8.43 0.00 0.00 2.57
1446 1470 2.721797 GCGCGTTGTTGATTCACTACTG 60.722 50.000 8.43 0.00 0.00 2.74
1447 1471 2.729360 CGCGTTGTTGATTCACTACTGA 59.271 45.455 0.00 0.00 0.00 3.41
1448 1472 3.367932 CGCGTTGTTGATTCACTACTGAT 59.632 43.478 0.00 0.00 0.00 2.90
1449 1473 4.143115 CGCGTTGTTGATTCACTACTGATT 60.143 41.667 0.00 0.00 0.00 2.57
1450 1474 5.614668 CGCGTTGTTGATTCACTACTGATTT 60.615 40.000 0.00 0.00 0.00 2.17
1451 1475 5.790495 GCGTTGTTGATTCACTACTGATTTC 59.210 40.000 0.00 0.00 0.00 2.17
1452 1476 6.347725 GCGTTGTTGATTCACTACTGATTTCT 60.348 38.462 0.00 0.00 0.00 2.52
1453 1477 7.148639 GCGTTGTTGATTCACTACTGATTTCTA 60.149 37.037 0.00 0.00 0.00 2.10
1454 1478 8.162880 CGTTGTTGATTCACTACTGATTTCTAC 58.837 37.037 0.00 0.00 0.00 2.59
1455 1479 7.812309 TGTTGATTCACTACTGATTTCTACG 57.188 36.000 0.00 0.00 0.00 3.51
1456 1480 6.811665 TGTTGATTCACTACTGATTTCTACGG 59.188 38.462 0.00 0.00 0.00 4.02
1457 1481 5.902681 TGATTCACTACTGATTTCTACGGG 58.097 41.667 0.00 0.00 0.00 5.28
1458 1482 3.795623 TCACTACTGATTTCTACGGGC 57.204 47.619 0.00 0.00 0.00 6.13
1459 1483 3.093814 TCACTACTGATTTCTACGGGCA 58.906 45.455 0.00 0.00 0.00 5.36
1460 1484 3.704566 TCACTACTGATTTCTACGGGCAT 59.295 43.478 0.00 0.00 0.00 4.40
1461 1485 3.804325 CACTACTGATTTCTACGGGCATG 59.196 47.826 0.00 0.00 0.00 4.06
1462 1486 3.451178 ACTACTGATTTCTACGGGCATGT 59.549 43.478 0.00 0.00 0.00 3.21
1463 1487 2.632377 ACTGATTTCTACGGGCATGTG 58.368 47.619 0.00 0.00 0.00 3.21
1464 1488 1.942657 CTGATTTCTACGGGCATGTGG 59.057 52.381 0.00 0.00 0.00 4.17
1465 1489 1.280710 TGATTTCTACGGGCATGTGGT 59.719 47.619 0.00 0.00 0.00 4.16
1466 1490 1.940613 GATTTCTACGGGCATGTGGTC 59.059 52.381 0.00 0.00 0.00 4.02
1467 1491 0.390603 TTTCTACGGGCATGTGGTCG 60.391 55.000 0.00 0.00 0.00 4.79
1468 1492 2.202878 CTACGGGCATGTGGTCGG 60.203 66.667 0.00 0.00 0.00 4.79
1469 1493 3.733344 CTACGGGCATGTGGTCGGG 62.733 68.421 0.00 0.00 0.00 5.14
1473 1497 4.028490 GGCATGTGGTCGGGGTGA 62.028 66.667 0.00 0.00 0.00 4.02
1486 1510 4.071961 TCGGGGTGACAATTGAGATATG 57.928 45.455 13.59 0.00 0.00 1.78
1487 1511 2.549754 CGGGGTGACAATTGAGATATGC 59.450 50.000 13.59 0.00 0.00 3.14
1488 1512 3.554934 GGGGTGACAATTGAGATATGCA 58.445 45.455 13.59 0.00 0.00 3.96
1489 1513 3.953612 GGGGTGACAATTGAGATATGCAA 59.046 43.478 13.59 0.00 0.00 4.08
1490 1514 4.586001 GGGGTGACAATTGAGATATGCAAT 59.414 41.667 13.59 0.00 37.56 3.56
1491 1515 5.278660 GGGGTGACAATTGAGATATGCAATC 60.279 44.000 13.59 0.00 35.06 2.67
1492 1516 5.446709 GGTGACAATTGAGATATGCAATCG 58.553 41.667 13.59 0.00 35.06 3.34
1493 1517 5.008019 GGTGACAATTGAGATATGCAATCGT 59.992 40.000 13.59 0.00 35.06 3.73
1494 1518 6.132056 GTGACAATTGAGATATGCAATCGTC 58.868 40.000 13.59 10.11 39.13 4.20
1495 1519 6.018425 GTGACAATTGAGATATGCAATCGTCT 60.018 38.462 13.59 0.00 39.32 4.18
1496 1520 6.539826 TGACAATTGAGATATGCAATCGTCTT 59.460 34.615 13.59 0.00 39.32 3.01
1497 1521 6.722301 ACAATTGAGATATGCAATCGTCTTG 58.278 36.000 13.59 3.52 35.06 3.02
1498 1522 6.317140 ACAATTGAGATATGCAATCGTCTTGT 59.683 34.615 13.59 4.06 35.06 3.16
1499 1523 5.723492 TTGAGATATGCAATCGTCTTGTG 57.277 39.130 0.00 0.00 0.00 3.33
1500 1524 3.557185 TGAGATATGCAATCGTCTTGTGC 59.443 43.478 0.00 0.00 38.78 4.57
1501 1525 2.541346 AGATATGCAATCGTCTTGTGCG 59.459 45.455 0.00 0.00 41.27 5.34
1502 1526 2.003196 TATGCAATCGTCTTGTGCGA 57.997 45.000 0.00 0.00 41.27 5.10
1503 1527 0.443869 ATGCAATCGTCTTGTGCGAC 59.556 50.000 0.00 0.00 41.27 5.19
1504 1528 1.132640 GCAATCGTCTTGTGCGACC 59.867 57.895 0.00 0.00 41.33 4.79
1505 1529 1.416049 CAATCGTCTTGTGCGACCG 59.584 57.895 0.00 0.00 41.33 4.79
1506 1530 1.006571 AATCGTCTTGTGCGACCGT 60.007 52.632 0.00 0.00 41.33 4.83
1534 1558 2.412870 GGAACCTTGGCCAAATTTTCG 58.587 47.619 20.91 6.39 0.00 3.46
1537 1561 2.316108 ACCTTGGCCAAATTTTCGTCT 58.684 42.857 20.91 0.00 0.00 4.18
1541 1565 1.339610 TGGCCAAATTTTCGTCTGGTG 59.660 47.619 0.61 0.00 0.00 4.17
1546 1570 4.537015 CCAAATTTTCGTCTGGTGTTCTC 58.463 43.478 0.00 0.00 0.00 2.87
1547 1571 4.275936 CCAAATTTTCGTCTGGTGTTCTCT 59.724 41.667 0.00 0.00 0.00 3.10
1548 1572 5.444122 CAAATTTTCGTCTGGTGTTCTCTC 58.556 41.667 0.00 0.00 0.00 3.20
1574 1621 1.032014 TTGAAGCCCTGTGACTTTGC 58.968 50.000 0.00 0.00 0.00 3.68
1584 1631 4.082571 CCCTGTGACTTTGCTGGAATTAAG 60.083 45.833 0.00 0.00 0.00 1.85
1587 1634 4.079253 GTGACTTTGCTGGAATTAAGGGA 58.921 43.478 0.00 0.00 0.00 4.20
1590 1637 4.677182 ACTTTGCTGGAATTAAGGGATGT 58.323 39.130 0.00 0.00 0.00 3.06
1591 1638 5.826643 ACTTTGCTGGAATTAAGGGATGTA 58.173 37.500 0.00 0.00 0.00 2.29
1624 1672 4.383850 TGTGTGTTAAAATGCTGCTTGT 57.616 36.364 0.00 0.00 0.00 3.16
1629 1677 4.737765 GTGTTAAAATGCTGCTTGTTCGAA 59.262 37.500 0.00 0.00 0.00 3.71
1631 1679 2.422276 AAATGCTGCTTGTTCGAACC 57.578 45.000 24.78 10.67 0.00 3.62
1655 1703 6.463897 CCCTAGGTTCAGTTTTAGACACTTGA 60.464 42.308 8.29 0.00 0.00 3.02
1656 1704 6.647067 CCTAGGTTCAGTTTTAGACACTTGAG 59.353 42.308 0.00 0.00 0.00 3.02
1660 1708 7.016268 AGGTTCAGTTTTAGACACTTGAGGATA 59.984 37.037 0.00 0.00 0.00 2.59
1681 1729 4.665833 ATGAATCAACAATCAGGCCATG 57.334 40.909 5.01 0.00 0.00 3.66
1697 1745 2.095919 GCCATGTCCAGTTGTCGTTAAC 60.096 50.000 0.00 0.00 0.00 2.01
1698 1746 2.482721 CCATGTCCAGTTGTCGTTAACC 59.517 50.000 0.00 0.00 0.00 2.85
1699 1747 3.399330 CATGTCCAGTTGTCGTTAACCT 58.601 45.455 0.00 0.00 0.00 3.50
1700 1748 2.828877 TGTCCAGTTGTCGTTAACCTG 58.171 47.619 0.00 1.11 0.00 4.00
1705 1753 2.032030 CAGTTGTCGTTAACCTGCCTTG 60.032 50.000 0.00 0.00 0.00 3.61
1706 1754 2.158871 AGTTGTCGTTAACCTGCCTTGA 60.159 45.455 0.00 0.00 0.00 3.02
1711 1759 5.597806 TGTCGTTAACCTGCCTTGATATAG 58.402 41.667 0.00 0.00 0.00 1.31
1712 1760 5.361571 TGTCGTTAACCTGCCTTGATATAGA 59.638 40.000 0.00 0.00 0.00 1.98
1718 1766 9.780186 GTTAACCTGCCTTGATATAGAGTTAAT 57.220 33.333 0.00 0.00 31.94 1.40
1719 1767 9.778741 TTAACCTGCCTTGATATAGAGTTAATG 57.221 33.333 0.00 0.00 0.00 1.90
1720 1768 7.380423 ACCTGCCTTGATATAGAGTTAATGT 57.620 36.000 0.00 0.00 0.00 2.71
1721 1769 7.445945 ACCTGCCTTGATATAGAGTTAATGTC 58.554 38.462 0.00 0.00 0.00 3.06
1722 1770 7.291182 ACCTGCCTTGATATAGAGTTAATGTCT 59.709 37.037 0.00 0.00 0.00 3.41
1723 1771 7.601886 CCTGCCTTGATATAGAGTTAATGTCTG 59.398 40.741 1.49 0.00 0.00 3.51
1724 1772 8.023021 TGCCTTGATATAGAGTTAATGTCTGT 57.977 34.615 1.49 0.00 0.00 3.41
1725 1773 8.144478 TGCCTTGATATAGAGTTAATGTCTGTC 58.856 37.037 1.49 0.00 0.00 3.51
1726 1774 7.327275 GCCTTGATATAGAGTTAATGTCTGTCG 59.673 40.741 1.49 0.00 0.00 4.35
1727 1775 8.353684 CCTTGATATAGAGTTAATGTCTGTCGT 58.646 37.037 1.49 0.00 0.00 4.34
1730 1778 9.557061 TGATATAGAGTTAATGTCTGTCGTACT 57.443 33.333 0.00 0.00 0.00 2.73
1733 1781 8.961294 ATAGAGTTAATGTCTGTCGTACTAGT 57.039 34.615 0.00 0.00 0.00 2.57
1734 1782 7.684937 AGAGTTAATGTCTGTCGTACTAGTT 57.315 36.000 0.00 0.00 0.00 2.24
1795 1843 4.589216 TTCCCTTTGATTGTTTCTGCTG 57.411 40.909 0.00 0.00 0.00 4.41
1796 1844 2.297033 TCCCTTTGATTGTTTCTGCTGC 59.703 45.455 0.00 0.00 0.00 5.25
1797 1845 2.298163 CCCTTTGATTGTTTCTGCTGCT 59.702 45.455 0.00 0.00 0.00 4.24
1809 1857 1.881973 TCTGCTGCTTTGTGATGTTCC 59.118 47.619 0.00 0.00 0.00 3.62
1816 1864 5.181690 TGCTTTGTGATGTTCCTGTTAAC 57.818 39.130 0.00 0.00 0.00 2.01
1822 1870 6.627395 TGTGATGTTCCTGTTAACGAATTT 57.373 33.333 0.26 0.00 31.76 1.82
1823 1871 7.033530 TGTGATGTTCCTGTTAACGAATTTT 57.966 32.000 0.26 0.00 31.76 1.82
1866 1921 4.342665 CCTCTTCTACCTGGAACATACCTC 59.657 50.000 0.00 0.00 38.20 3.85
1880 1935 8.479689 TGGAACATACCTCGAAGAAATATTGTA 58.520 33.333 0.00 0.00 34.09 2.41
1890 1945 8.689251 TCGAAGAAATATTGTACTCAGTCAAG 57.311 34.615 0.00 0.00 0.00 3.02
1897 1952 5.662674 ATTGTACTCAGTCAAGGTAGTCC 57.337 43.478 0.00 0.00 0.00 3.85
1913 1968 7.141100 AGGTAGTCCGATAAAACATTTTGTG 57.859 36.000 0.00 0.00 39.05 3.33
1922 1977 9.086336 CCGATAAAACATTTTGTGCTTATTGAT 57.914 29.630 0.00 0.00 29.94 2.57
1936 1991 2.742428 ATTGATGGGGTGTCTGGATG 57.258 50.000 0.00 0.00 0.00 3.51
1978 2033 4.902443 TTCGTGTTGGATAAAGTGCAAA 57.098 36.364 0.00 0.00 40.01 3.68
2062 2158 2.702788 TTGCCTGCGTGCATCCATG 61.703 57.895 0.41 0.00 41.70 3.66
2067 2163 1.800586 CCTGCGTGCATCCATGTATAC 59.199 52.381 0.00 0.00 0.00 1.47
2068 2164 2.482864 CTGCGTGCATCCATGTATACA 58.517 47.619 8.27 8.27 0.00 2.29
2069 2165 2.477754 CTGCGTGCATCCATGTATACAG 59.522 50.000 11.91 3.82 0.00 2.74
2070 2166 2.102252 TGCGTGCATCCATGTATACAGA 59.898 45.455 11.91 4.53 0.00 3.41
2071 2167 3.130633 GCGTGCATCCATGTATACAGAA 58.869 45.455 11.91 0.00 0.00 3.02
2072 2168 3.559655 GCGTGCATCCATGTATACAGAAA 59.440 43.478 11.91 0.00 0.00 2.52
2073 2169 4.552767 GCGTGCATCCATGTATACAGAAAC 60.553 45.833 11.91 4.42 0.00 2.78
2075 2171 5.983118 CGTGCATCCATGTATACAGAAACTA 59.017 40.000 11.91 0.00 0.00 2.24
2076 2172 6.478673 CGTGCATCCATGTATACAGAAACTAA 59.521 38.462 11.91 0.00 0.00 2.24
2084 2180 9.561069 CCATGTATACAGAAACTAAAAGCCTAT 57.439 33.333 11.91 0.00 0.00 2.57
2155 2251 9.213799 ACAGAAACTAAAAGATGAGATTCAGAC 57.786 33.333 0.00 0.00 29.44 3.51
2160 2256 3.533606 AAGATGAGATTCAGACCCACG 57.466 47.619 0.00 0.00 0.00 4.94
2161 2257 2.461695 AGATGAGATTCAGACCCACGT 58.538 47.619 0.00 0.00 0.00 4.49
2194 2290 6.548321 TGTGAAACAGAGGGGTAAATGTAAT 58.452 36.000 0.00 0.00 45.67 1.89
2234 2330 2.423660 CCACAAAGGGGGTAACAGTGAA 60.424 50.000 0.00 0.00 39.74 3.18
2290 2386 1.001406 CCTGAGACGCCTGAGTTCTTT 59.999 52.381 0.00 0.00 0.00 2.52
2560 2695 4.683320 CGATCATGTTGATTCTGCGATAGT 59.317 41.667 0.00 0.00 37.20 2.12
2565 2700 9.710900 ATCATGTTGATTCTGCGATAGTATTTA 57.289 29.630 0.00 0.00 32.13 1.40
2858 2993 1.760192 AAGGCACATGCTCTTGATCC 58.240 50.000 3.48 0.00 41.70 3.36
2947 3082 3.006247 GCTGGTCCTTTCTCATTGAGAC 58.994 50.000 15.90 5.28 38.51 3.36
2949 3084 2.003301 GGTCCTTTCTCATTGAGACGC 58.997 52.381 15.90 5.06 38.51 5.19
3096 3234 4.394729 ACCTTGCGTGAAAAATCTCCTTA 58.605 39.130 0.00 0.00 0.00 2.69
3257 3396 9.847224 TTCTCTTTATTGAAAAGTGTTCTAGGT 57.153 29.630 0.00 0.00 0.00 3.08
3258 3397 9.847224 TCTCTTTATTGAAAAGTGTTCTAGGTT 57.153 29.630 0.00 0.00 0.00 3.50
3265 3404 7.329588 TGAAAAGTGTTCTAGGTTTTTCCTC 57.670 36.000 0.00 0.00 44.42 3.71
3266 3405 6.037830 TGAAAAGTGTTCTAGGTTTTTCCTCG 59.962 38.462 0.00 0.00 44.42 4.63
3460 3610 8.902806 CAATTGGTTTCTTTATGGTGCTATCTA 58.097 33.333 0.00 0.00 0.00 1.98
3677 3838 7.451255 TCCCAATCAAATAAGACAACTTCACAT 59.549 33.333 0.00 0.00 37.53 3.21
3714 3875 4.134563 GCCACAATGGGTAGTAACATAGG 58.865 47.826 0.00 0.00 38.19 2.57
3715 3876 4.134563 CCACAATGGGTAGTAACATAGGC 58.865 47.826 0.00 0.00 32.67 3.93
3716 3877 4.384757 CCACAATGGGTAGTAACATAGGCA 60.385 45.833 0.00 0.00 32.67 4.75
3717 3878 5.376625 CACAATGGGTAGTAACATAGGCAT 58.623 41.667 0.00 0.00 0.00 4.40
3718 3879 5.239306 CACAATGGGTAGTAACATAGGCATG 59.761 44.000 0.00 0.00 38.21 4.06
3719 3880 9.962289 CCACAATGGGTAGTAACATAGGCATGT 62.962 44.444 0.00 0.00 39.47 3.21
3732 3893 7.841282 ACATAGGCATGTTACTAGTCTATGT 57.159 36.000 20.37 20.37 42.98 2.29
3733 3894 8.251383 ACATAGGCATGTTACTAGTCTATGTT 57.749 34.615 20.37 10.86 42.98 2.71
3734 3895 9.363401 ACATAGGCATGTTACTAGTCTATGTTA 57.637 33.333 20.37 11.01 42.98 2.41
3735 3896 9.627395 CATAGGCATGTTACTAGTCTATGTTAC 57.373 37.037 15.62 0.00 32.32 2.50
3736 3897 7.899648 AGGCATGTTACTAGTCTATGTTACT 57.100 36.000 0.00 1.43 0.00 2.24
3737 3898 8.991783 AGGCATGTTACTAGTCTATGTTACTA 57.008 34.615 0.00 0.00 0.00 1.82
3738 3899 8.848182 AGGCATGTTACTAGTCTATGTTACTAC 58.152 37.037 0.00 0.00 0.00 2.73
3739 3900 8.081025 GGCATGTTACTAGTCTATGTTACTACC 58.919 40.741 0.00 0.00 0.00 3.18
3740 3901 8.848182 GCATGTTACTAGTCTATGTTACTACCT 58.152 37.037 0.00 0.00 0.00 3.08
3750 3911 8.384718 AGTCTATGTTACTACCTCTATAGTGGG 58.615 40.741 21.82 16.23 36.09 4.61
3751 3912 7.611079 GTCTATGTTACTACCTCTATAGTGGGG 59.389 44.444 21.82 16.35 36.09 4.96
3752 3913 5.999987 TGTTACTACCTCTATAGTGGGGA 57.000 43.478 21.82 11.28 36.09 4.81
3753 3914 5.950023 TGTTACTACCTCTATAGTGGGGAG 58.050 45.833 21.82 20.04 36.09 4.30
3754 3915 5.434376 TGTTACTACCTCTATAGTGGGGAGT 59.566 44.000 24.72 24.72 36.09 3.85
3755 3916 6.621098 TGTTACTACCTCTATAGTGGGGAGTA 59.379 42.308 23.32 23.32 36.09 2.59
3756 3917 7.129349 TGTTACTACCTCTATAGTGGGGAGTAA 59.871 40.741 28.26 28.26 38.03 2.24
3757 3918 5.951204 ACTACCTCTATAGTGGGGAGTAAC 58.049 45.833 22.09 0.00 34.02 2.50
3758 3919 4.894252 ACCTCTATAGTGGGGAGTAACA 57.106 45.455 21.82 0.00 33.22 2.41
3759 3920 5.420215 ACCTCTATAGTGGGGAGTAACAT 57.580 43.478 21.82 0.00 33.22 2.71
3760 3921 6.541264 ACCTCTATAGTGGGGAGTAACATA 57.459 41.667 21.82 0.00 33.22 2.29
3761 3922 7.117331 ACCTCTATAGTGGGGAGTAACATAT 57.883 40.000 21.82 0.00 33.22 1.78
3762 3923 6.954684 ACCTCTATAGTGGGGAGTAACATATG 59.045 42.308 21.82 0.00 33.22 1.78
3763 3924 6.954684 CCTCTATAGTGGGGAGTAACATATGT 59.045 42.308 12.29 1.41 0.00 2.29
3764 3925 7.093727 CCTCTATAGTGGGGAGTAACATATGTG 60.094 44.444 9.63 0.00 0.00 3.21
3765 3926 7.302948 TCTATAGTGGGGAGTAACATATGTGT 58.697 38.462 9.63 2.63 41.28 3.72
3766 3927 4.487714 AGTGGGGAGTAACATATGTGTG 57.512 45.455 9.63 0.00 38.92 3.82
3767 3928 4.101114 AGTGGGGAGTAACATATGTGTGA 58.899 43.478 9.63 0.00 38.92 3.58
3768 3929 4.721776 AGTGGGGAGTAACATATGTGTGAT 59.278 41.667 9.63 0.00 38.92 3.06
3769 3930 5.903010 AGTGGGGAGTAACATATGTGTGATA 59.097 40.000 9.63 0.00 38.92 2.15
3770 3931 6.385759 AGTGGGGAGTAACATATGTGTGATAA 59.614 38.462 9.63 0.00 38.92 1.75
3771 3932 6.482308 GTGGGGAGTAACATATGTGTGATAAC 59.518 42.308 9.63 1.91 38.92 1.89
3772 3933 6.157123 TGGGGAGTAACATATGTGTGATAACA 59.843 38.462 9.63 2.24 38.92 2.41
3773 3934 7.147391 TGGGGAGTAACATATGTGTGATAACAT 60.147 37.037 9.63 0.00 43.21 2.71
3774 3935 7.173218 GGGGAGTAACATATGTGTGATAACATG 59.827 40.741 9.63 0.00 40.93 3.21
3775 3936 7.307989 GGGAGTAACATATGTGTGATAACATGC 60.308 40.741 9.63 0.00 40.93 4.06
3776 3937 7.226523 GGAGTAACATATGTGTGATAACATGCA 59.773 37.037 9.63 0.00 40.93 3.96
3777 3938 8.504812 AGTAACATATGTGTGATAACATGCAA 57.495 30.769 9.63 0.00 40.93 4.08
3778 3939 8.397906 AGTAACATATGTGTGATAACATGCAAC 58.602 33.333 9.63 0.00 40.93 4.17
3779 3940 6.756299 ACATATGTGTGATAACATGCAACA 57.244 33.333 7.78 0.00 40.93 3.33
3780 3941 6.554419 ACATATGTGTGATAACATGCAACAC 58.446 36.000 7.78 8.32 40.93 3.32
3781 3942 6.375174 ACATATGTGTGATAACATGCAACACT 59.625 34.615 7.78 5.41 40.93 3.55
3782 3943 5.710513 ATGTGTGATAACATGCAACACTT 57.289 34.783 14.68 7.42 39.32 3.16
3783 3944 5.107109 TGTGTGATAACATGCAACACTTC 57.893 39.130 14.68 0.79 33.41 3.01
3784 3945 4.578105 TGTGTGATAACATGCAACACTTCA 59.422 37.500 14.68 3.18 33.41 3.02
3785 3946 5.241285 TGTGTGATAACATGCAACACTTCAT 59.759 36.000 14.68 0.00 33.41 2.57
3786 3947 6.151691 GTGTGATAACATGCAACACTTCATT 58.848 36.000 8.05 0.00 33.41 2.57
3787 3948 6.642131 GTGTGATAACATGCAACACTTCATTT 59.358 34.615 8.05 0.00 33.41 2.32
3788 3949 7.807433 GTGTGATAACATGCAACACTTCATTTA 59.193 33.333 8.05 0.00 33.41 1.40
3789 3950 8.522003 TGTGATAACATGCAACACTTCATTTAT 58.478 29.630 0.00 0.00 33.41 1.40
3790 3951 9.357652 GTGATAACATGCAACACTTCATTTATT 57.642 29.630 0.00 0.00 0.00 1.40
3793 3954 7.816945 AACATGCAACACTTCATTTATTAGC 57.183 32.000 0.00 0.00 0.00 3.09
3794 3955 6.332630 ACATGCAACACTTCATTTATTAGCC 58.667 36.000 0.00 0.00 0.00 3.93
3795 3956 6.153340 ACATGCAACACTTCATTTATTAGCCT 59.847 34.615 0.00 0.00 0.00 4.58
3796 3957 7.339212 ACATGCAACACTTCATTTATTAGCCTA 59.661 33.333 0.00 0.00 0.00 3.93
3797 3958 7.880160 TGCAACACTTCATTTATTAGCCTAT 57.120 32.000 0.00 0.00 0.00 2.57
3798 3959 8.972458 TGCAACACTTCATTTATTAGCCTATA 57.028 30.769 0.00 0.00 0.00 1.31
3799 3960 9.056005 TGCAACACTTCATTTATTAGCCTATAG 57.944 33.333 0.00 0.00 0.00 1.31
3800 3961 9.273016 GCAACACTTCATTTATTAGCCTATAGA 57.727 33.333 0.00 0.00 0.00 1.98
3803 3964 9.765795 ACACTTCATTTATTAGCCTATAGACAC 57.234 33.333 0.00 0.00 0.00 3.67
3804 3965 9.764363 CACTTCATTTATTAGCCTATAGACACA 57.236 33.333 0.00 0.00 0.00 3.72
3810 3971 8.833231 TTTATTAGCCTATAGACACATCTTGC 57.167 34.615 0.00 0.00 36.29 4.01
3811 3972 3.760580 AGCCTATAGACACATCTTGCC 57.239 47.619 0.00 0.00 36.29 4.52
3812 3973 3.312890 AGCCTATAGACACATCTTGCCT 58.687 45.455 0.00 0.00 36.29 4.75
3813 3974 3.713764 AGCCTATAGACACATCTTGCCTT 59.286 43.478 0.00 0.00 36.29 4.35
3814 3975 3.812053 GCCTATAGACACATCTTGCCTTG 59.188 47.826 0.00 0.00 36.29 3.61
3815 3976 4.443457 GCCTATAGACACATCTTGCCTTGA 60.443 45.833 0.00 0.00 36.29 3.02
3816 3977 5.744300 GCCTATAGACACATCTTGCCTTGAT 60.744 44.000 0.00 0.00 36.29 2.57
3817 3978 6.519043 GCCTATAGACACATCTTGCCTTGATA 60.519 42.308 0.00 0.00 36.29 2.15
3818 3979 7.619050 CCTATAGACACATCTTGCCTTGATAT 58.381 38.462 0.00 0.00 36.29 1.63
3819 3980 7.548427 CCTATAGACACATCTTGCCTTGATATG 59.452 40.741 0.00 0.00 36.29 1.78
3820 3981 5.108187 AGACACATCTTGCCTTGATATGT 57.892 39.130 0.00 0.00 34.70 2.29
3823 3984 4.916870 CACATCTTGCCTTGATATGTGTG 58.083 43.478 0.00 0.00 41.46 3.82
3824 3985 4.637091 CACATCTTGCCTTGATATGTGTGA 59.363 41.667 0.00 0.00 41.46 3.58
3825 3986 5.298527 CACATCTTGCCTTGATATGTGTGAT 59.701 40.000 0.00 0.00 41.46 3.06
3826 3987 5.298527 ACATCTTGCCTTGATATGTGTGATG 59.701 40.000 0.00 0.00 35.23 3.07
3827 3988 4.847198 TCTTGCCTTGATATGTGTGATGT 58.153 39.130 0.00 0.00 0.00 3.06
3828 3989 5.255687 TCTTGCCTTGATATGTGTGATGTT 58.744 37.500 0.00 0.00 0.00 2.71
3829 3990 6.413892 TCTTGCCTTGATATGTGTGATGTTA 58.586 36.000 0.00 0.00 0.00 2.41
3830 3991 6.316140 TCTTGCCTTGATATGTGTGATGTTAC 59.684 38.462 0.00 0.00 0.00 2.50
3831 3992 5.744171 TGCCTTGATATGTGTGATGTTACT 58.256 37.500 0.00 0.00 0.00 2.24
3832 3993 5.817296 TGCCTTGATATGTGTGATGTTACTC 59.183 40.000 0.00 0.00 0.00 2.59
3833 3994 5.817296 GCCTTGATATGTGTGATGTTACTCA 59.183 40.000 0.00 0.00 0.00 3.41
3834 3995 6.484643 GCCTTGATATGTGTGATGTTACTCAT 59.515 38.462 0.00 0.00 38.11 2.90
3835 3996 7.657354 GCCTTGATATGTGTGATGTTACTCATA 59.343 37.037 0.00 0.00 39.73 2.15
3836 3997 8.982685 CCTTGATATGTGTGATGTTACTCATAC 58.017 37.037 0.00 5.35 38.84 2.39
3837 3998 9.755804 CTTGATATGTGTGATGTTACTCATACT 57.244 33.333 10.75 3.32 38.84 2.12
3843 4004 8.803397 TGTGTGATGTTACTCATACTACTAGT 57.197 34.615 0.00 0.00 37.92 2.57
3844 4005 9.895138 TGTGTGATGTTACTCATACTACTAGTA 57.105 33.333 1.89 1.89 37.92 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.498726 GCTCTTCCAGCTCGGGAG 59.501 66.667 4.54 4.54 45.83 4.30
10 11 1.447489 CGCAGGTCAGCTCTTCCAG 60.447 63.158 0.00 0.00 0.00 3.86
11 12 2.659016 CGCAGGTCAGCTCTTCCA 59.341 61.111 0.00 0.00 0.00 3.53
84 97 2.509561 GAGGAAGAAGCGCCGGTC 60.510 66.667 2.29 0.00 0.00 4.79
286 299 2.436115 GCCCCGAAAACCTCCTCG 60.436 66.667 0.00 0.00 34.83 4.63
398 411 0.104304 CTAAACATCTCGACCCCCGG 59.896 60.000 0.00 0.00 39.14 5.73
407 420 3.445857 GCGAGGTGGTACTAAACATCTC 58.554 50.000 0.00 0.00 40.57 2.75
478 491 2.843401 AGTATGTTACAACGTGGGCA 57.157 45.000 0.00 0.00 0.00 5.36
479 492 3.371898 GGTAAGTATGTTACAACGTGGGC 59.628 47.826 0.00 0.00 0.00 5.36
480 493 4.628333 CAGGTAAGTATGTTACAACGTGGG 59.372 45.833 0.00 0.00 33.20 4.61
481 494 4.628333 CCAGGTAAGTATGTTACAACGTGG 59.372 45.833 10.21 10.21 41.71 4.94
519 533 1.815421 CCACGGGCCTTCTTGATCG 60.815 63.158 0.84 0.00 0.00 3.69
551 565 1.005867 CCACCAAGTGCAATGTGGC 60.006 57.895 10.28 0.00 41.55 5.01
593 607 0.314302 CGACGTTCACTCTCCCACTT 59.686 55.000 0.00 0.00 0.00 3.16
619 633 2.779033 CGCGTACCCCCTCTACCAC 61.779 68.421 0.00 0.00 0.00 4.16
647 661 4.824479 AATTTTACAGAATTGGCAGGGG 57.176 40.909 0.00 0.00 0.00 4.79
694 708 4.932200 AGACCTCAAGAATAAACTGCGAAG 59.068 41.667 0.00 0.00 0.00 3.79
695 709 4.690748 CAGACCTCAAGAATAAACTGCGAA 59.309 41.667 0.00 0.00 0.00 4.70
698 712 6.348868 CCTTTCAGACCTCAAGAATAAACTGC 60.349 42.308 0.00 0.00 0.00 4.40
711 725 1.353091 ACAGGGACCTTTCAGACCTC 58.647 55.000 0.00 0.00 0.00 3.85
723 737 8.314021 AGGATGAAAATGAAAATTTACAGGGAC 58.686 33.333 0.00 0.00 0.00 4.46
725 739 9.506018 AAAGGATGAAAATGAAAATTTACAGGG 57.494 29.630 0.00 0.00 0.00 4.45
734 748 8.923270 ACAAGGTCTAAAGGATGAAAATGAAAA 58.077 29.630 0.00 0.00 0.00 2.29
738 752 7.177392 AGGAACAAGGTCTAAAGGATGAAAATG 59.823 37.037 0.00 0.00 0.00 2.32
762 776 5.646360 ACAAAGATAAATTGTGGGTCGTAGG 59.354 40.000 0.00 0.00 39.43 3.18
766 780 6.183360 GGACTACAAAGATAAATTGTGGGTCG 60.183 42.308 7.50 0.00 41.79 4.79
769 783 7.339212 TCATGGACTACAAAGATAAATTGTGGG 59.661 37.037 7.50 1.73 41.79 4.61
770 784 8.279970 TCATGGACTACAAAGATAAATTGTGG 57.720 34.615 2.37 2.11 42.76 4.17
771 785 8.400947 CCTCATGGACTACAAAGATAAATTGTG 58.599 37.037 2.37 0.00 37.26 3.33
784 798 7.789831 AGAAATAATACCTCCTCATGGACTACA 59.210 37.037 0.00 0.00 37.46 2.74
785 799 8.091449 CAGAAATAATACCTCCTCATGGACTAC 58.909 40.741 0.00 0.00 37.46 2.73
816 830 6.235664 TGTAGGGTCTCCAATGAAAAGTTAC 58.764 40.000 0.00 0.00 34.83 2.50
829 843 1.710816 ATAGCAGCTGTAGGGTCTCC 58.289 55.000 16.64 0.00 0.00 3.71
871 885 7.491372 TCGCACCTTAATTCTACTTTCTGTATG 59.509 37.037 0.00 0.00 0.00 2.39
877 891 8.451748 AGAAATTCGCACCTTAATTCTACTTTC 58.548 33.333 0.00 0.00 0.00 2.62
878 892 8.336801 AGAAATTCGCACCTTAATTCTACTTT 57.663 30.769 0.00 0.00 0.00 2.66
879 893 7.923414 AGAAATTCGCACCTTAATTCTACTT 57.077 32.000 0.00 0.00 0.00 2.24
880 894 7.606456 TCAAGAAATTCGCACCTTAATTCTACT 59.394 33.333 0.00 0.00 0.00 2.57
881 895 7.748847 TCAAGAAATTCGCACCTTAATTCTAC 58.251 34.615 0.00 0.00 0.00 2.59
882 896 7.915293 TCAAGAAATTCGCACCTTAATTCTA 57.085 32.000 0.00 0.00 0.00 2.10
883 897 6.817765 TCAAGAAATTCGCACCTTAATTCT 57.182 33.333 0.00 0.00 0.00 2.40
884 898 7.305474 TCTTCAAGAAATTCGCACCTTAATTC 58.695 34.615 0.00 0.00 0.00 2.17
885 899 7.174946 TCTCTTCAAGAAATTCGCACCTTAATT 59.825 33.333 0.00 0.00 0.00 1.40
886 900 6.655003 TCTCTTCAAGAAATTCGCACCTTAAT 59.345 34.615 0.00 0.00 0.00 1.40
891 905 4.749245 TTCTCTTCAAGAAATTCGCACC 57.251 40.909 0.00 0.00 41.10 5.01
903 917 7.572523 TTTCTGCAGAATTCTTTCTCTTCAA 57.427 32.000 28.89 6.79 40.28 2.69
955 976 1.002087 CCTCCCTCTGTGTACGCTTTT 59.998 52.381 8.10 0.00 0.00 2.27
964 985 3.988976 TCAAATCTTCCTCCCTCTGTG 57.011 47.619 0.00 0.00 0.00 3.66
1015 1037 4.297891 CGCCGCCGATACGTACGA 62.298 66.667 24.41 6.04 36.29 3.43
1023 1045 4.388499 ACCAGTTTCGCCGCCGAT 62.388 61.111 0.00 0.00 43.97 4.18
1069 1091 2.516923 CTGTTACCTGACGTCGATGAC 58.483 52.381 12.58 5.81 0.00 3.06
1135 1158 1.067295 AGAGCAACCATCAGTTCCCA 58.933 50.000 0.00 0.00 36.18 4.37
1140 1163 3.777106 TCAGAAAGAGCAACCATCAGT 57.223 42.857 0.00 0.00 0.00 3.41
1147 1170 3.679389 TCATCCCTTCAGAAAGAGCAAC 58.321 45.455 0.00 0.00 34.14 4.17
1151 1174 4.029520 TCTCCTCATCCCTTCAGAAAGAG 58.970 47.826 0.00 0.00 34.14 2.85
1153 1176 3.134442 CCTCTCCTCATCCCTTCAGAAAG 59.866 52.174 0.00 0.00 0.00 2.62
1157 1180 2.318908 CTCCTCTCCTCATCCCTTCAG 58.681 57.143 0.00 0.00 0.00 3.02
1304 1328 1.977293 GAGAGGCTGCGGGGATCTTT 61.977 60.000 0.00 0.00 0.00 2.52
1317 1341 1.673920 CTGGTTCTAGAGACGAGAGGC 59.326 57.143 9.76 0.00 42.06 4.70
1332 1356 2.294979 GTCGACAAAGGGAAACTGGTT 58.705 47.619 11.55 0.00 0.00 3.67
1340 1364 4.124238 CAAGTAAACTGTCGACAAAGGGA 58.876 43.478 20.49 1.19 0.00 4.20
1382 1406 4.101942 GTGTCTGTGTCGAGAATCTGATC 58.898 47.826 0.00 0.00 0.00 2.92
1401 1425 2.949106 GATTGCGCAGTGCTGTGT 59.051 55.556 11.25 0.00 46.63 3.72
1402 1426 2.202260 CGATTGCGCAGTGCTGTG 60.202 61.111 11.25 8.26 46.63 3.66
1405 1429 3.121030 GGTCGATTGCGCAGTGCT 61.121 61.111 11.25 0.00 46.63 4.40
1423 1447 1.203065 GTGAATCAACAACGCGCGA 59.797 52.632 39.36 14.00 0.00 5.87
1424 1448 0.436913 TAGTGAATCAACAACGCGCG 59.563 50.000 30.96 30.96 0.00 6.86
1426 1450 2.729360 TCAGTAGTGAATCAACAACGCG 59.271 45.455 3.53 3.53 0.00 6.01
1427 1451 4.928661 ATCAGTAGTGAATCAACAACGC 57.071 40.909 3.93 0.00 35.88 4.84
1428 1452 7.121974 AGAAATCAGTAGTGAATCAACAACG 57.878 36.000 3.93 0.00 35.88 4.10
1429 1453 8.162880 CGTAGAAATCAGTAGTGAATCAACAAC 58.837 37.037 3.93 3.84 35.88 3.32
1430 1454 7.330946 CCGTAGAAATCAGTAGTGAATCAACAA 59.669 37.037 3.93 0.00 35.88 2.83
1432 1456 6.255887 CCCGTAGAAATCAGTAGTGAATCAAC 59.744 42.308 3.93 0.00 35.88 3.18
1434 1458 5.681437 GCCCGTAGAAATCAGTAGTGAATCA 60.681 44.000 3.93 0.00 35.88 2.57
1437 1461 3.512329 TGCCCGTAGAAATCAGTAGTGAA 59.488 43.478 3.93 0.00 35.88 3.18
1438 1462 3.093814 TGCCCGTAGAAATCAGTAGTGA 58.906 45.455 1.95 1.95 37.02 3.41
1439 1463 3.520290 TGCCCGTAGAAATCAGTAGTG 57.480 47.619 0.00 0.00 0.00 2.74
1440 1464 3.451178 ACATGCCCGTAGAAATCAGTAGT 59.549 43.478 0.00 0.00 0.00 2.73
1441 1465 3.804325 CACATGCCCGTAGAAATCAGTAG 59.196 47.826 0.00 0.00 0.00 2.57
1442 1466 3.431626 CCACATGCCCGTAGAAATCAGTA 60.432 47.826 0.00 0.00 0.00 2.74
1443 1467 2.632377 CACATGCCCGTAGAAATCAGT 58.368 47.619 0.00 0.00 0.00 3.41
1444 1468 1.942657 CCACATGCCCGTAGAAATCAG 59.057 52.381 0.00 0.00 0.00 2.90
1445 1469 1.280710 ACCACATGCCCGTAGAAATCA 59.719 47.619 0.00 0.00 0.00 2.57
1446 1470 1.940613 GACCACATGCCCGTAGAAATC 59.059 52.381 0.00 0.00 0.00 2.17
1447 1471 1.742411 CGACCACATGCCCGTAGAAAT 60.742 52.381 0.00 0.00 0.00 2.17
1448 1472 0.390603 CGACCACATGCCCGTAGAAA 60.391 55.000 0.00 0.00 0.00 2.52
1449 1473 1.216977 CGACCACATGCCCGTAGAA 59.783 57.895 0.00 0.00 0.00 2.10
1450 1474 2.717044 CCGACCACATGCCCGTAGA 61.717 63.158 0.00 0.00 0.00 2.59
1451 1475 2.202878 CCGACCACATGCCCGTAG 60.203 66.667 0.00 0.00 0.00 3.51
1452 1476 3.776781 CCCGACCACATGCCCGTA 61.777 66.667 0.00 0.00 0.00 4.02
1456 1480 4.028490 TCACCCCGACCACATGCC 62.028 66.667 0.00 0.00 0.00 4.40
1457 1481 2.746277 GTCACCCCGACCACATGC 60.746 66.667 0.00 0.00 38.85 4.06
1458 1482 0.322456 ATTGTCACCCCGACCACATG 60.322 55.000 0.00 0.00 44.71 3.21
1459 1483 0.404040 AATTGTCACCCCGACCACAT 59.596 50.000 0.00 0.00 44.71 3.21
1460 1484 0.536233 CAATTGTCACCCCGACCACA 60.536 55.000 0.00 0.00 44.71 4.17
1461 1485 0.250553 TCAATTGTCACCCCGACCAC 60.251 55.000 5.13 0.00 44.71 4.16
1462 1486 0.036164 CTCAATTGTCACCCCGACCA 59.964 55.000 5.13 0.00 44.71 4.02
1463 1487 0.323629 TCTCAATTGTCACCCCGACC 59.676 55.000 5.13 0.00 44.71 4.79
1464 1488 2.403252 ATCTCAATTGTCACCCCGAC 57.597 50.000 5.13 0.00 45.61 4.79
1465 1489 3.744214 GCATATCTCAATTGTCACCCCGA 60.744 47.826 5.13 0.00 0.00 5.14
1466 1490 2.549754 GCATATCTCAATTGTCACCCCG 59.450 50.000 5.13 0.00 0.00 5.73
1467 1491 3.554934 TGCATATCTCAATTGTCACCCC 58.445 45.455 5.13 0.00 0.00 4.95
1468 1492 5.561532 CGATTGCATATCTCAATTGTCACCC 60.562 44.000 5.13 0.00 34.59 4.61
1469 1493 5.008019 ACGATTGCATATCTCAATTGTCACC 59.992 40.000 5.13 0.00 42.03 4.02
1470 1494 6.052840 ACGATTGCATATCTCAATTGTCAC 57.947 37.500 5.13 0.00 42.03 3.67
1473 1497 6.317140 ACAAGACGATTGCATATCTCAATTGT 59.683 34.615 15.15 15.15 45.98 2.71
1474 1498 6.631636 CACAAGACGATTGCATATCTCAATTG 59.368 38.462 0.00 0.00 39.84 2.32
1475 1499 6.722301 CACAAGACGATTGCATATCTCAATT 58.278 36.000 0.00 0.00 34.59 2.32
1476 1500 5.277683 GCACAAGACGATTGCATATCTCAAT 60.278 40.000 0.00 0.63 36.91 2.57
1477 1501 4.034394 GCACAAGACGATTGCATATCTCAA 59.966 41.667 0.00 0.00 36.22 3.02
1478 1502 3.557185 GCACAAGACGATTGCATATCTCA 59.443 43.478 0.00 0.00 36.22 3.27
1479 1503 3.362401 CGCACAAGACGATTGCATATCTC 60.362 47.826 0.00 0.00 35.93 2.75
1480 1504 2.541346 CGCACAAGACGATTGCATATCT 59.459 45.455 0.00 0.00 35.93 1.98
1481 1505 2.539688 TCGCACAAGACGATTGCATATC 59.460 45.455 0.00 0.00 35.93 1.63
1482 1506 2.285220 GTCGCACAAGACGATTGCATAT 59.715 45.455 0.00 0.00 42.26 1.78
1483 1507 1.658596 GTCGCACAAGACGATTGCATA 59.341 47.619 0.00 0.00 42.26 3.14
1484 1508 0.443869 GTCGCACAAGACGATTGCAT 59.556 50.000 0.00 0.00 42.26 3.96
1485 1509 1.565156 GGTCGCACAAGACGATTGCA 61.565 55.000 0.00 0.00 42.26 4.08
1486 1510 1.132640 GGTCGCACAAGACGATTGC 59.867 57.895 0.00 0.00 42.26 3.56
1487 1511 1.282248 ACGGTCGCACAAGACGATTG 61.282 55.000 0.00 0.00 42.26 2.67
1488 1512 1.006571 ACGGTCGCACAAGACGATT 60.007 52.632 0.00 0.00 42.26 3.34
1489 1513 1.733041 CACGGTCGCACAAGACGAT 60.733 57.895 0.00 0.00 42.26 3.73
1490 1514 2.354188 CACGGTCGCACAAGACGA 60.354 61.111 0.00 0.00 41.81 4.20
1491 1515 3.403057 CCACGGTCGCACAAGACG 61.403 66.667 0.00 0.00 41.81 4.18
1492 1516 3.041940 CCCACGGTCGCACAAGAC 61.042 66.667 0.00 0.00 40.25 3.01
1493 1517 3.542676 ACCCACGGTCGCACAAGA 61.543 61.111 0.00 0.00 0.00 3.02
1494 1518 3.345808 CACCCACGGTCGCACAAG 61.346 66.667 0.00 0.00 31.02 3.16
1495 1519 4.920112 CCACCCACGGTCGCACAA 62.920 66.667 0.00 0.00 31.02 3.33
1501 1525 4.340246 GTTCCCCCACCCACGGTC 62.340 72.222 0.00 0.00 31.02 4.79
1504 1528 3.576259 AAGGTTCCCCCACCCACG 61.576 66.667 0.00 0.00 37.58 4.94
1505 1529 2.117423 CAAGGTTCCCCCACCCAC 59.883 66.667 0.00 0.00 37.58 4.61
1506 1530 3.189646 CCAAGGTTCCCCCACCCA 61.190 66.667 0.00 0.00 37.58 4.51
1529 1553 2.698797 AGGAGAGAACACCAGACGAAAA 59.301 45.455 0.00 0.00 0.00 2.29
1534 1558 4.875561 AAGTTAGGAGAGAACACCAGAC 57.124 45.455 0.00 0.00 0.00 3.51
1537 1561 5.611374 CTTCAAAGTTAGGAGAGAACACCA 58.389 41.667 0.00 0.00 0.00 4.17
1541 1565 4.004314 GGGCTTCAAAGTTAGGAGAGAAC 58.996 47.826 0.00 0.00 0.00 3.01
1546 1570 3.077359 CACAGGGCTTCAAAGTTAGGAG 58.923 50.000 0.00 0.00 0.00 3.69
1547 1571 2.708861 TCACAGGGCTTCAAAGTTAGGA 59.291 45.455 0.00 0.00 0.00 2.94
1548 1572 2.814336 GTCACAGGGCTTCAAAGTTAGG 59.186 50.000 0.00 0.00 0.00 2.69
1574 1621 5.009010 GCACATGTACATCCCTTAATTCCAG 59.991 44.000 5.07 0.00 0.00 3.86
1584 1631 1.402968 CAAGCAGCACATGTACATCCC 59.597 52.381 5.07 0.00 0.00 3.85
1587 1634 2.227149 CACACAAGCAGCACATGTACAT 59.773 45.455 1.41 1.41 0.00 2.29
1590 1637 1.965935 ACACACAAGCAGCACATGTA 58.034 45.000 0.00 0.00 0.00 2.29
1591 1638 1.105457 AACACACAAGCAGCACATGT 58.895 45.000 0.00 0.00 0.00 3.21
1629 1677 4.906060 AGTGTCTAAAACTGAACCTAGGGT 59.094 41.667 14.81 6.29 37.65 4.34
1631 1679 6.522054 TCAAGTGTCTAAAACTGAACCTAGG 58.478 40.000 7.41 7.41 0.00 3.02
1655 1703 5.075493 GGCCTGATTGTTGATTCATATCCT 58.925 41.667 0.00 0.00 0.00 3.24
1656 1704 4.828939 TGGCCTGATTGTTGATTCATATCC 59.171 41.667 3.32 0.00 0.00 2.59
1660 1708 4.028131 ACATGGCCTGATTGTTGATTCAT 58.972 39.130 3.32 0.00 0.00 2.57
1681 1729 1.529865 GCAGGTTAACGACAACTGGAC 59.470 52.381 9.82 0.00 0.00 4.02
1697 1745 7.601886 CAGACATTAACTCTATATCAAGGCAGG 59.398 40.741 0.00 0.00 0.00 4.85
1698 1746 8.147058 ACAGACATTAACTCTATATCAAGGCAG 58.853 37.037 0.00 0.00 0.00 4.85
1699 1747 8.023021 ACAGACATTAACTCTATATCAAGGCA 57.977 34.615 0.00 0.00 0.00 4.75
1700 1748 7.327275 CGACAGACATTAACTCTATATCAAGGC 59.673 40.741 0.00 0.00 0.00 4.35
1711 1759 7.806960 ACAAACTAGTACGACAGACATTAACTC 59.193 37.037 0.00 0.00 0.00 3.01
1712 1760 7.655490 ACAAACTAGTACGACAGACATTAACT 58.345 34.615 0.00 0.00 0.00 2.24
1718 1766 5.893687 TGAAACAAACTAGTACGACAGACA 58.106 37.500 0.00 0.00 0.00 3.41
1719 1767 6.817270 TTGAAACAAACTAGTACGACAGAC 57.183 37.500 0.00 0.00 0.00 3.51
1720 1768 7.546667 AGTTTTGAAACAAACTAGTACGACAGA 59.453 33.333 9.08 0.00 41.30 3.41
1721 1769 7.681903 AGTTTTGAAACAAACTAGTACGACAG 58.318 34.615 9.08 0.00 41.30 3.51
1722 1770 7.546667 AGAGTTTTGAAACAAACTAGTACGACA 59.453 33.333 9.08 0.00 41.30 4.35
1723 1771 7.903062 AGAGTTTTGAAACAAACTAGTACGAC 58.097 34.615 9.08 0.00 41.30 4.34
1724 1772 9.241317 CTAGAGTTTTGAAACAAACTAGTACGA 57.759 33.333 9.08 0.00 41.30 3.43
1725 1773 9.028185 ACTAGAGTTTTGAAACAAACTAGTACG 57.972 33.333 23.04 0.00 42.76 3.67
1731 1779 9.444600 TCACTAACTAGAGTTTTGAAACAAACT 57.555 29.630 9.08 0.00 41.30 2.66
1734 1782 9.391006 ACATCACTAACTAGAGTTTTGAAACAA 57.609 29.630 9.08 0.00 41.30 2.83
1795 1843 4.024387 TCGTTAACAGGAACATCACAAAGC 60.024 41.667 6.39 0.00 0.00 3.51
1796 1844 5.666969 TCGTTAACAGGAACATCACAAAG 57.333 39.130 6.39 0.00 0.00 2.77
1797 1845 6.627395 ATTCGTTAACAGGAACATCACAAA 57.373 33.333 6.39 0.00 29.67 2.83
1809 1857 9.463443 AATTTCTTCCAGAAAATTCGTTAACAG 57.537 29.630 6.39 0.00 46.08 3.16
1822 1870 3.895041 GGTGGGTGAAATTTCTTCCAGAA 59.105 43.478 23.72 12.32 33.28 3.02
1823 1871 3.140144 AGGTGGGTGAAATTTCTTCCAGA 59.860 43.478 23.72 12.93 33.28 3.86
1866 1921 7.545965 ACCTTGACTGAGTACAATATTTCTTCG 59.454 37.037 0.00 0.00 0.00 3.79
1880 1935 2.581216 TCGGACTACCTTGACTGAGT 57.419 50.000 0.00 0.00 0.00 3.41
1890 1945 5.798434 GCACAAAATGTTTTATCGGACTACC 59.202 40.000 0.00 0.00 0.00 3.18
1897 1952 9.890085 CATCAATAAGCACAAAATGTTTTATCG 57.110 29.630 0.00 0.00 33.24 2.92
1913 1968 2.092429 TCCAGACACCCCATCAATAAGC 60.092 50.000 0.00 0.00 0.00 3.09
1922 1977 1.444933 AAGAACATCCAGACACCCCA 58.555 50.000 0.00 0.00 0.00 4.96
1957 2012 4.498345 GGTTTGCACTTTATCCAACACGAA 60.498 41.667 0.00 0.00 0.00 3.85
1958 2013 3.003897 GGTTTGCACTTTATCCAACACGA 59.996 43.478 0.00 0.00 0.00 4.35
1959 2014 3.305110 GGTTTGCACTTTATCCAACACG 58.695 45.455 0.00 0.00 0.00 4.49
1978 2033 1.805428 ATTTGCAAGCTTTCGCGGGT 61.805 50.000 6.13 0.00 42.32 5.28
1990 2045 5.691305 GCTGACTTTTGATACACATTTGCAA 59.309 36.000 0.00 0.00 0.00 4.08
2022 2077 4.728772 ACCCAATTTCTGACTTGACATCA 58.271 39.130 1.74 0.00 0.00 3.07
2075 2171 8.424133 GGGACAAATGAAATATCATAGGCTTTT 58.576 33.333 0.00 0.00 45.60 2.27
2076 2172 7.015584 GGGGACAAATGAAATATCATAGGCTTT 59.984 37.037 0.00 0.00 45.60 3.51
2084 2180 5.205517 AGGTGGGGACAAATGAAATATCA 57.794 39.130 0.00 0.00 46.06 2.15
2155 2251 3.972950 TTCACATTTTGTACACGTGGG 57.027 42.857 21.57 0.00 0.00 4.61
2160 2256 5.507315 CCCCTCTGTTTCACATTTTGTACAC 60.507 44.000 0.00 0.00 0.00 2.90
2161 2257 4.582656 CCCCTCTGTTTCACATTTTGTACA 59.417 41.667 0.00 0.00 0.00 2.90
2194 2290 1.336887 GGTTAAGTCTGCGAGCTCACA 60.337 52.381 15.40 9.67 0.00 3.58
2234 2330 6.759272 TCAGCTGATTGTACTTCTACTTTGT 58.241 36.000 13.74 0.00 0.00 2.83
2290 2386 3.318557 TGCTCAAGACATGTTTTGCATCA 59.681 39.130 21.19 15.45 35.19 3.07
2351 2486 9.847224 ACCTTTTATGTTAGAAGAAGAGAACAA 57.153 29.630 0.00 0.00 35.56 2.83
2357 2492 9.720769 CCAACTACCTTTTATGTTAGAAGAAGA 57.279 33.333 0.00 0.00 0.00 2.87
2358 2493 8.451748 GCCAACTACCTTTTATGTTAGAAGAAG 58.548 37.037 0.00 0.00 0.00 2.85
2359 2494 7.940137 TGCCAACTACCTTTTATGTTAGAAGAA 59.060 33.333 0.00 0.00 0.00 2.52
2668 2803 4.033776 CCTGGGGCGTGGTGACAT 62.034 66.667 0.00 0.00 46.14 3.06
2886 3021 4.397103 ATCGCAGATCATTCAAAAGCTGAA 59.603 37.500 0.00 0.00 45.33 3.02
2947 3082 3.909776 ATGGATTGTTATGCATCAGCG 57.090 42.857 0.19 0.00 46.23 5.18
2949 3084 7.384115 GGAATTCAATGGATTGTTATGCATCAG 59.616 37.037 0.19 0.00 41.37 2.90
3051 3189 6.753279 GGTACGTATGCATGTAACAGTTTAGA 59.247 38.462 10.16 0.00 34.49 2.10
3096 3234 4.041198 TCTTCAGACTTCCCGGTACATTTT 59.959 41.667 0.00 0.00 0.00 1.82
3261 3400 5.799827 AAAATTTCAATTCCCAACGAGGA 57.200 34.783 0.00 0.00 41.22 3.71
3262 3401 9.816354 AATATAAAATTTCAATTCCCAACGAGG 57.184 29.630 0.00 0.00 37.03 4.63
3392 3540 9.135189 TCTTGTGCTTGCCAATATTATTATCTT 57.865 29.630 0.00 0.00 0.00 2.40
3394 3542 9.918630 ATTCTTGTGCTTGCCAATATTATTATC 57.081 29.630 0.00 0.00 0.00 1.75
3460 3610 4.787551 TGTGAACTTAATGTCCACTTGGT 58.212 39.130 0.00 0.00 36.34 3.67
3486 3636 4.081862 GCACTTGGATTAAAACCCCTTACC 60.082 45.833 0.00 0.00 0.00 2.85
3646 3803 7.461749 AGTTGTCTTATTTGATTGGGAAGAGA 58.538 34.615 0.00 0.00 0.00 3.10
3647 3804 7.693969 AGTTGTCTTATTTGATTGGGAAGAG 57.306 36.000 0.00 0.00 0.00 2.85
3648 3805 7.723616 TGAAGTTGTCTTATTTGATTGGGAAGA 59.276 33.333 0.00 0.00 33.64 2.87
3649 3806 7.809806 GTGAAGTTGTCTTATTTGATTGGGAAG 59.190 37.037 0.00 0.00 33.64 3.46
3677 3838 9.333961 ACCCATTGTGGCTAGTCTAAATATATA 57.666 33.333 0.00 0.00 35.79 0.86
3688 3849 3.841845 TGTTACTACCCATTGTGGCTAGT 59.158 43.478 8.55 8.55 35.79 2.57
3689 3850 4.481368 TGTTACTACCCATTGTGGCTAG 57.519 45.455 0.00 0.00 35.79 3.42
3690 3851 5.071250 CCTATGTTACTACCCATTGTGGCTA 59.929 44.000 0.00 0.00 35.79 3.93
3691 3852 4.141482 CCTATGTTACTACCCATTGTGGCT 60.141 45.833 0.00 0.00 35.79 4.75
3692 3853 4.134563 CCTATGTTACTACCCATTGTGGC 58.865 47.826 0.00 0.00 35.79 5.01
3693 3854 4.134563 GCCTATGTTACTACCCATTGTGG 58.865 47.826 0.00 0.00 37.25 4.17
3694 3855 4.776349 TGCCTATGTTACTACCCATTGTG 58.224 43.478 0.00 0.00 0.00 3.33
3695 3856 5.104109 ACATGCCTATGTTACTACCCATTGT 60.104 40.000 0.00 0.00 45.01 2.71
3696 3857 5.376625 ACATGCCTATGTTACTACCCATTG 58.623 41.667 0.00 0.00 45.01 2.82
3697 3858 5.646692 ACATGCCTATGTTACTACCCATT 57.353 39.130 0.00 0.00 45.01 3.16
3709 3870 9.627395 GTAACATAGACTAGTAACATGCCTATG 57.373 37.037 17.53 17.53 38.43 2.23
3710 3871 9.589461 AGTAACATAGACTAGTAACATGCCTAT 57.411 33.333 0.00 0.00 0.00 2.57
3711 3872 8.991783 AGTAACATAGACTAGTAACATGCCTA 57.008 34.615 0.00 0.00 0.00 3.93
3712 3873 7.899648 AGTAACATAGACTAGTAACATGCCT 57.100 36.000 0.00 0.00 0.00 4.75
3713 3874 8.081025 GGTAGTAACATAGACTAGTAACATGCC 58.919 40.741 0.00 0.00 30.08 4.40
3714 3875 8.848182 AGGTAGTAACATAGACTAGTAACATGC 58.152 37.037 0.00 0.00 30.08 4.06
3724 3885 8.384718 CCCACTATAGAGGTAGTAACATAGACT 58.615 40.741 14.29 0.00 33.29 3.24
3725 3886 7.611079 CCCCACTATAGAGGTAGTAACATAGAC 59.389 44.444 14.29 0.00 33.29 2.59
3726 3887 7.518653 TCCCCACTATAGAGGTAGTAACATAGA 59.481 40.741 14.29 0.00 33.29 1.98
3727 3888 7.696981 TCCCCACTATAGAGGTAGTAACATAG 58.303 42.308 14.29 0.00 33.29 2.23
3728 3889 7.296628 ACTCCCCACTATAGAGGTAGTAACATA 59.703 40.741 14.29 0.00 33.29 2.29
3729 3890 6.104392 ACTCCCCACTATAGAGGTAGTAACAT 59.896 42.308 14.29 0.00 33.29 2.71
3730 3891 5.434376 ACTCCCCACTATAGAGGTAGTAACA 59.566 44.000 14.29 0.00 33.29 2.41
3731 3892 5.951204 ACTCCCCACTATAGAGGTAGTAAC 58.049 45.833 14.29 0.00 33.29 2.50
3732 3893 7.129349 TGTTACTCCCCACTATAGAGGTAGTAA 59.871 40.741 23.15 23.15 33.91 2.24
3733 3894 6.621098 TGTTACTCCCCACTATAGAGGTAGTA 59.379 42.308 17.42 17.42 33.29 1.82
3734 3895 5.434376 TGTTACTCCCCACTATAGAGGTAGT 59.566 44.000 18.82 18.82 35.34 2.73
3735 3896 5.950023 TGTTACTCCCCACTATAGAGGTAG 58.050 45.833 14.29 12.87 31.70 3.18
3736 3897 5.999987 TGTTACTCCCCACTATAGAGGTA 57.000 43.478 14.29 2.62 31.70 3.08
3737 3898 4.894252 TGTTACTCCCCACTATAGAGGT 57.106 45.455 14.29 0.00 31.70 3.85
3738 3899 6.954684 ACATATGTTACTCCCCACTATAGAGG 59.045 42.308 6.78 8.10 31.70 3.69
3739 3900 7.451877 ACACATATGTTACTCCCCACTATAGAG 59.548 40.741 5.37 0.00 34.46 2.43
3740 3901 7.232737 CACACATATGTTACTCCCCACTATAGA 59.767 40.741 5.37 0.00 36.72 1.98
3741 3902 7.232737 TCACACATATGTTACTCCCCACTATAG 59.767 40.741 5.37 0.00 36.72 1.31
3742 3903 7.070629 TCACACATATGTTACTCCCCACTATA 58.929 38.462 5.37 0.00 36.72 1.31
3743 3904 5.903010 TCACACATATGTTACTCCCCACTAT 59.097 40.000 5.37 0.00 36.72 2.12
3744 3905 5.274015 TCACACATATGTTACTCCCCACTA 58.726 41.667 5.37 0.00 36.72 2.74
3745 3906 4.101114 TCACACATATGTTACTCCCCACT 58.899 43.478 5.37 0.00 36.72 4.00
3746 3907 4.481368 TCACACATATGTTACTCCCCAC 57.519 45.455 5.37 0.00 36.72 4.61
3747 3908 6.157123 TGTTATCACACATATGTTACTCCCCA 59.843 38.462 5.37 0.00 36.72 4.96
3748 3909 6.588204 TGTTATCACACATATGTTACTCCCC 58.412 40.000 5.37 0.00 36.72 4.81
3749 3910 7.307989 GCATGTTATCACACATATGTTACTCCC 60.308 40.741 5.37 0.00 36.72 4.30
3750 3911 7.226523 TGCATGTTATCACACATATGTTACTCC 59.773 37.037 5.37 0.00 36.72 3.85
3751 3912 8.141835 TGCATGTTATCACACATATGTTACTC 57.858 34.615 5.37 0.00 36.72 2.59
3752 3913 8.397906 GTTGCATGTTATCACACATATGTTACT 58.602 33.333 5.37 0.00 36.72 2.24
3753 3914 8.180920 TGTTGCATGTTATCACACATATGTTAC 58.819 33.333 5.37 0.00 36.72 2.50
3754 3915 8.180920 GTGTTGCATGTTATCACACATATGTTA 58.819 33.333 5.37 0.00 36.72 2.41
3755 3916 7.028962 GTGTTGCATGTTATCACACATATGTT 58.971 34.615 5.37 0.00 36.72 2.71
3756 3917 6.375174 AGTGTTGCATGTTATCACACATATGT 59.625 34.615 15.74 1.41 40.80 2.29
3757 3918 6.788243 AGTGTTGCATGTTATCACACATATG 58.212 36.000 15.74 0.00 35.51 1.78
3758 3919 7.121020 TGAAGTGTTGCATGTTATCACACATAT 59.879 33.333 15.74 4.04 35.51 1.78
3759 3920 6.429385 TGAAGTGTTGCATGTTATCACACATA 59.571 34.615 15.74 1.77 35.51 2.29
3760 3921 5.241285 TGAAGTGTTGCATGTTATCACACAT 59.759 36.000 15.74 5.81 37.93 3.21
3761 3922 4.578105 TGAAGTGTTGCATGTTATCACACA 59.422 37.500 15.74 0.00 35.03 3.72
3762 3923 5.107109 TGAAGTGTTGCATGTTATCACAC 57.893 39.130 7.36 7.36 35.03 3.82
3763 3924 5.963176 ATGAAGTGTTGCATGTTATCACA 57.037 34.783 12.61 0.00 37.31 3.58
3764 3925 8.915871 ATAAATGAAGTGTTGCATGTTATCAC 57.084 30.769 0.00 0.30 0.00 3.06
3767 3928 9.520204 GCTAATAAATGAAGTGTTGCATGTTAT 57.480 29.630 0.00 0.00 0.00 1.89
3768 3929 7.973388 GGCTAATAAATGAAGTGTTGCATGTTA 59.027 33.333 0.00 0.00 0.00 2.41
3769 3930 6.813152 GGCTAATAAATGAAGTGTTGCATGTT 59.187 34.615 0.00 0.00 0.00 2.71
3770 3931 6.153340 AGGCTAATAAATGAAGTGTTGCATGT 59.847 34.615 0.00 0.00 0.00 3.21
3771 3932 6.567050 AGGCTAATAAATGAAGTGTTGCATG 58.433 36.000 0.00 0.00 0.00 4.06
3772 3933 6.780457 AGGCTAATAAATGAAGTGTTGCAT 57.220 33.333 0.00 0.00 0.00 3.96
3773 3934 7.880160 ATAGGCTAATAAATGAAGTGTTGCA 57.120 32.000 0.00 0.00 0.00 4.08
3774 3935 9.273016 TCTATAGGCTAATAAATGAAGTGTTGC 57.727 33.333 0.00 0.00 0.00 4.17
3777 3938 9.765795 GTGTCTATAGGCTAATAAATGAAGTGT 57.234 33.333 5.83 0.00 0.00 3.55
3778 3939 9.764363 TGTGTCTATAGGCTAATAAATGAAGTG 57.236 33.333 5.83 0.00 0.00 3.16
3784 3945 9.442047 GCAAGATGTGTCTATAGGCTAATAAAT 57.558 33.333 5.83 0.00 33.30 1.40
3785 3946 7.878127 GGCAAGATGTGTCTATAGGCTAATAAA 59.122 37.037 5.83 0.00 33.30 1.40
3786 3947 7.235606 AGGCAAGATGTGTCTATAGGCTAATAA 59.764 37.037 5.83 0.00 41.69 1.40
3787 3948 6.726299 AGGCAAGATGTGTCTATAGGCTAATA 59.274 38.462 5.83 0.00 41.69 0.98
3788 3949 5.545723 AGGCAAGATGTGTCTATAGGCTAAT 59.454 40.000 5.83 0.00 41.69 1.73
3789 3950 4.901849 AGGCAAGATGTGTCTATAGGCTAA 59.098 41.667 5.83 0.00 41.69 3.09
3790 3951 4.483950 AGGCAAGATGTGTCTATAGGCTA 58.516 43.478 5.83 0.00 41.69 3.93
3791 3952 3.312890 AGGCAAGATGTGTCTATAGGCT 58.687 45.455 5.83 0.00 41.69 4.58
3792 3953 3.760580 AGGCAAGATGTGTCTATAGGC 57.239 47.619 0.00 0.00 41.69 3.93
3793 3954 5.282055 TCAAGGCAAGATGTGTCTATAGG 57.718 43.478 0.00 0.00 43.11 2.57
3794 3955 8.093307 ACATATCAAGGCAAGATGTGTCTATAG 58.907 37.037 13.16 0.00 43.11 1.31
3795 3956 7.874528 CACATATCAAGGCAAGATGTGTCTATA 59.125 37.037 15.13 0.00 43.11 1.31
3796 3957 6.709397 CACATATCAAGGCAAGATGTGTCTAT 59.291 38.462 15.13 0.00 43.11 1.98
3797 3958 6.051074 CACATATCAAGGCAAGATGTGTCTA 58.949 40.000 15.13 0.00 43.11 2.59
3799 3960 5.165911 CACATATCAAGGCAAGATGTGTC 57.834 43.478 15.13 0.00 43.18 3.67
3802 3963 4.847198 TCACACATATCAAGGCAAGATGT 58.153 39.130 2.43 0.00 0.00 3.06
3803 3964 5.298527 ACATCACACATATCAAGGCAAGATG 59.701 40.000 0.00 0.00 36.24 2.90
3804 3965 5.443283 ACATCACACATATCAAGGCAAGAT 58.557 37.500 0.00 0.00 0.00 2.40
3805 3966 4.847198 ACATCACACATATCAAGGCAAGA 58.153 39.130 0.00 0.00 0.00 3.02
3806 3967 5.571784 AACATCACACATATCAAGGCAAG 57.428 39.130 0.00 0.00 0.00 4.01
3807 3968 6.179756 AGTAACATCACACATATCAAGGCAA 58.820 36.000 0.00 0.00 0.00 4.52
3808 3969 5.744171 AGTAACATCACACATATCAAGGCA 58.256 37.500 0.00 0.00 0.00 4.75
3809 3970 5.817296 TGAGTAACATCACACATATCAAGGC 59.183 40.000 0.00 0.00 0.00 4.35
3810 3971 8.982685 GTATGAGTAACATCACACATATCAAGG 58.017 37.037 0.00 0.00 40.07 3.61
3811 3972 9.755804 AGTATGAGTAACATCACACATATCAAG 57.244 33.333 0.00 0.00 40.07 3.02
3817 3978 9.409918 ACTAGTAGTATGAGTAACATCACACAT 57.590 33.333 0.00 0.00 40.07 3.21
3818 3979 8.803397 ACTAGTAGTATGAGTAACATCACACA 57.197 34.615 0.00 0.00 40.07 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.