Multiple sequence alignment - TraesCS1D01G208300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G208300 chr1D 100.000 3418 0 0 1 3418 294218184 294221601 0.000000e+00 6312.0
1 TraesCS1D01G208300 chr1D 97.186 533 14 1 1 532 484233950 484233418 0.000000e+00 900.0
2 TraesCS1D01G208300 chr1B 94.694 2337 79 19 846 3151 395967249 395969571 0.000000e+00 3587.0
3 TraesCS1D01G208300 chr1B 95.105 143 7 0 3158 3300 681005331 681005473 3.430000e-55 226.0
4 TraesCS1D01G208300 chr1B 96.581 117 4 0 3302 3418 395969643 395969759 9.680000e-46 195.0
5 TraesCS1D01G208300 chr1A 93.818 2119 71 19 913 3009 367010160 367012240 0.000000e+00 3133.0
6 TraesCS1D01G208300 chr1A 94.118 136 8 0 3165 3300 256710739 256710604 1.240000e-49 207.0
7 TraesCS1D01G208300 chr1A 94.118 136 8 0 3165 3300 540137721 540137586 1.240000e-49 207.0
8 TraesCS1D01G208300 chr1A 92.086 139 11 0 3164 3302 313006163 313006301 2.690000e-46 196.0
9 TraesCS1D01G208300 chr1A 90.196 102 9 1 648 748 56876671 56876772 7.700000e-27 132.0
10 TraesCS1D01G208300 chr1A 87.611 113 11 3 648 757 554046220 554046332 9.960000e-26 128.0
11 TraesCS1D01G208300 chr1A 96.429 56 2 0 3302 3357 367012402 367012457 3.630000e-15 93.5
12 TraesCS1D01G208300 chr3D 97.378 534 13 1 1 533 442982888 442982355 0.000000e+00 907.0
13 TraesCS1D01G208300 chr3D 95.652 552 18 3 3 553 274354070 274353524 0.000000e+00 881.0
14 TraesCS1D01G208300 chr3D 95.833 144 5 1 3161 3303 352360575 352360432 7.380000e-57 231.0
15 TraesCS1D01G208300 chr2D 97.723 527 11 1 1 526 301433619 301433093 0.000000e+00 905.0
16 TraesCS1D01G208300 chr2D 97.538 528 12 1 1 527 644297675 644298202 0.000000e+00 902.0
17 TraesCS1D01G208300 chr7D 97.015 536 15 1 1 535 30963790 30964325 0.000000e+00 900.0
18 TraesCS1D01G208300 chr7D 77.852 149 25 8 1502 1646 631629010 631629154 6.080000e-13 86.1
19 TraesCS1D01G208300 chr4D 97.533 527 12 1 1 526 447628279 447627753 0.000000e+00 900.0
20 TraesCS1D01G208300 chr4D 96.667 540 16 2 1 538 334868795 334869334 0.000000e+00 896.0
21 TraesCS1D01G208300 chr5D 97.009 535 15 1 1 534 228232908 228232374 0.000000e+00 898.0
22 TraesCS1D01G208300 chr5D 95.105 143 7 0 3158 3300 385979186 385979328 3.430000e-55 226.0
23 TraesCS1D01G208300 chr5D 95.276 127 6 0 3174 3300 275606289 275606415 5.780000e-48 202.0
24 TraesCS1D01G208300 chr4A 78.385 805 153 18 1420 2212 657519623 657518828 1.420000e-138 503.0
25 TraesCS1D01G208300 chr4A 77.764 805 158 18 1420 2212 658239345 658240140 3.090000e-130 475.0
26 TraesCS1D01G208300 chr4A 78.066 424 71 10 1140 1561 657524025 657523622 7.320000e-62 248.0
27 TraesCS1D01G208300 chr4A 80.081 246 43 5 1151 1393 657519856 657519614 9.750000e-41 178.0
28 TraesCS1D01G208300 chr4A 89.051 137 15 0 3165 3301 653684720 653684584 1.630000e-38 171.0
29 TraesCS1D01G208300 chr4A 90.291 103 8 2 648 748 629494039 629494141 2.140000e-27 134.0
30 TraesCS1D01G208300 chr7B 96.350 137 5 0 3164 3300 109595701 109595837 3.430000e-55 226.0
31 TraesCS1D01G208300 chr7B 93.919 148 9 0 3159 3306 379776470 379776323 1.230000e-54 224.0
32 TraesCS1D01G208300 chr7B 94.245 139 8 0 3164 3302 709520550 709520688 2.670000e-51 213.0
33 TraesCS1D01G208300 chr6B 96.350 137 5 0 3164 3300 9917151 9917287 3.430000e-55 226.0
34 TraesCS1D01G208300 chr6B 89.157 83 9 0 533 615 671158174 671158256 1.680000e-18 104.0
35 TraesCS1D01G208300 chr3B 94.286 140 8 0 3158 3297 828079836 828079975 7.430000e-52 215.0
36 TraesCS1D01G208300 chr3B 86.567 67 9 0 1597 1663 46328609 46328675 1.320000e-09 75.0
37 TraesCS1D01G208300 chr2B 94.161 137 8 0 3164 3300 135790449 135790585 3.460000e-50 209.0
38 TraesCS1D01G208300 chr2B 90.291 103 8 2 648 748 69171562 69171460 2.140000e-27 134.0
39 TraesCS1D01G208300 chr6A 85.816 141 12 2 616 748 422776110 422776250 3.560000e-30 143.0
40 TraesCS1D01G208300 chr6A 91.176 102 8 1 648 748 107694543 107694442 1.650000e-28 137.0
41 TraesCS1D01G208300 chr6A 90.196 102 9 1 648 748 480305158 480305259 7.700000e-27 132.0
42 TraesCS1D01G208300 chr5B 90.566 106 9 1 648 752 153888784 153888679 4.600000e-29 139.0
43 TraesCS1D01G208300 chr5B 84.615 78 10 2 527 604 668125710 668125635 3.660000e-10 76.8
44 TraesCS1D01G208300 chr7A 78.008 241 32 14 527 753 9434788 9434555 7.700000e-27 132.0
45 TraesCS1D01G208300 chr5A 88.764 89 10 0 527 615 616911656 616911568 3.610000e-20 110.0
46 TraesCS1D01G208300 chr3A 86.301 73 10 0 1600 1672 38013065 38012993 2.830000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G208300 chr1D 294218184 294221601 3417 False 6312.000000 6312 100.0000 1 3418 1 chr1D.!!$F1 3417
1 TraesCS1D01G208300 chr1D 484233418 484233950 532 True 900.000000 900 97.1860 1 532 1 chr1D.!!$R1 531
2 TraesCS1D01G208300 chr1B 395967249 395969759 2510 False 1891.000000 3587 95.6375 846 3418 2 chr1B.!!$F2 2572
3 TraesCS1D01G208300 chr1A 367010160 367012457 2297 False 1613.250000 3133 95.1235 913 3357 2 chr1A.!!$F4 2444
4 TraesCS1D01G208300 chr3D 442982355 442982888 533 True 907.000000 907 97.3780 1 533 1 chr3D.!!$R3 532
5 TraesCS1D01G208300 chr3D 274353524 274354070 546 True 881.000000 881 95.6520 3 553 1 chr3D.!!$R1 550
6 TraesCS1D01G208300 chr2D 301433093 301433619 526 True 905.000000 905 97.7230 1 526 1 chr2D.!!$R1 525
7 TraesCS1D01G208300 chr2D 644297675 644298202 527 False 902.000000 902 97.5380 1 527 1 chr2D.!!$F1 526
8 TraesCS1D01G208300 chr7D 30963790 30964325 535 False 900.000000 900 97.0150 1 535 1 chr7D.!!$F1 534
9 TraesCS1D01G208300 chr4D 447627753 447628279 526 True 900.000000 900 97.5330 1 526 1 chr4D.!!$R1 525
10 TraesCS1D01G208300 chr4D 334868795 334869334 539 False 896.000000 896 96.6670 1 538 1 chr4D.!!$F1 537
11 TraesCS1D01G208300 chr5D 228232374 228232908 534 True 898.000000 898 97.0090 1 534 1 chr5D.!!$R1 533
12 TraesCS1D01G208300 chr4A 658239345 658240140 795 False 475.000000 475 77.7640 1420 2212 1 chr4A.!!$F2 792
13 TraesCS1D01G208300 chr4A 657518828 657524025 5197 True 309.666667 503 78.8440 1140 2212 3 chr4A.!!$R2 1072

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
815 818 0.108615 CGCCTTGAGATTGACGAGGT 60.109 55.000 0.0 0.0 40.14 3.85 F
817 820 1.066858 GCCTTGAGATTGACGAGGTCA 60.067 52.381 0.0 0.0 41.09 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2109 6263 2.681848 CACATTCTCATCTCCAGCAACC 59.318 50.000 0.0 0.0 0.0 3.77 R
2673 6837 3.678072 TGATAAAAGAACAAGAGCCGTCG 59.322 43.478 0.0 0.0 0.0 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.928116 GCAAGCTTCAAGCATTTGATCC 59.072 45.455 13.10 0.00 45.56 3.36
43 44 3.733077 GCTTCAAGCATTTGATCCCTTCG 60.733 47.826 3.89 0.00 42.60 3.79
83 84 2.360726 CACCGCAACCTAACCCCC 60.361 66.667 0.00 0.00 0.00 5.40
112 113 3.118956 ACTCTCACGAAGATCATGGGTTC 60.119 47.826 0.00 0.00 32.19 3.62
394 396 3.394606 ACCTTGGTCACCACATAAACTCT 59.605 43.478 0.00 0.00 30.78 3.24
538 541 0.329261 TCTTTCACCAGCCCATCAGG 59.671 55.000 0.00 0.00 39.47 3.86
553 556 1.300963 CAGGGGTCATGTCCTGGTG 59.699 63.158 18.22 7.59 44.99 4.17
554 557 2.044946 GGGGTCATGTCCTGGTGC 60.045 66.667 8.93 0.00 0.00 5.01
555 558 2.606587 GGGGTCATGTCCTGGTGCT 61.607 63.158 8.93 0.00 0.00 4.40
556 559 1.078143 GGGTCATGTCCTGGTGCTC 60.078 63.158 8.93 0.00 0.00 4.26
557 560 1.448540 GGTCATGTCCTGGTGCTCG 60.449 63.158 1.28 0.00 0.00 5.03
558 561 2.103042 GTCATGTCCTGGTGCTCGC 61.103 63.158 0.00 0.00 0.00 5.03
559 562 2.046988 CATGTCCTGGTGCTCGCA 60.047 61.111 0.00 0.00 0.00 5.10
560 563 1.450848 CATGTCCTGGTGCTCGCAT 60.451 57.895 0.00 0.00 0.00 4.73
561 564 1.028330 CATGTCCTGGTGCTCGCATT 61.028 55.000 0.00 0.00 0.00 3.56
562 565 0.322816 ATGTCCTGGTGCTCGCATTT 60.323 50.000 0.00 0.00 0.00 2.32
563 566 0.323302 TGTCCTGGTGCTCGCATTTA 59.677 50.000 0.00 0.00 0.00 1.40
564 567 1.065491 TGTCCTGGTGCTCGCATTTAT 60.065 47.619 0.00 0.00 0.00 1.40
565 568 2.017049 GTCCTGGTGCTCGCATTTATT 58.983 47.619 0.00 0.00 0.00 1.40
566 569 2.032178 GTCCTGGTGCTCGCATTTATTC 59.968 50.000 0.00 0.00 0.00 1.75
567 570 2.092968 TCCTGGTGCTCGCATTTATTCT 60.093 45.455 0.00 0.00 0.00 2.40
568 571 2.032550 CCTGGTGCTCGCATTTATTCTG 59.967 50.000 0.00 0.00 0.00 3.02
569 572 2.016318 TGGTGCTCGCATTTATTCTGG 58.984 47.619 0.00 0.00 0.00 3.86
570 573 2.017049 GGTGCTCGCATTTATTCTGGT 58.983 47.619 0.00 0.00 0.00 4.00
571 574 2.423538 GGTGCTCGCATTTATTCTGGTT 59.576 45.455 0.00 0.00 0.00 3.67
572 575 3.119495 GGTGCTCGCATTTATTCTGGTTT 60.119 43.478 0.00 0.00 0.00 3.27
573 576 4.485163 GTGCTCGCATTTATTCTGGTTTT 58.515 39.130 0.00 0.00 0.00 2.43
574 577 5.392595 GGTGCTCGCATTTATTCTGGTTTTA 60.393 40.000 0.00 0.00 0.00 1.52
575 578 6.265577 GTGCTCGCATTTATTCTGGTTTTAT 58.734 36.000 0.00 0.00 0.00 1.40
576 579 6.751888 GTGCTCGCATTTATTCTGGTTTTATT 59.248 34.615 0.00 0.00 0.00 1.40
577 580 7.275560 GTGCTCGCATTTATTCTGGTTTTATTT 59.724 33.333 0.00 0.00 0.00 1.40
578 581 7.816995 TGCTCGCATTTATTCTGGTTTTATTTT 59.183 29.630 0.00 0.00 0.00 1.82
579 582 9.296400 GCTCGCATTTATTCTGGTTTTATTTTA 57.704 29.630 0.00 0.00 0.00 1.52
589 592 9.869757 ATTCTGGTTTTATTTTAGAATTTCCGG 57.130 29.630 0.00 0.00 35.25 5.14
590 593 7.317390 TCTGGTTTTATTTTAGAATTTCCGGC 58.683 34.615 0.00 0.00 0.00 6.13
591 594 6.094061 TGGTTTTATTTTAGAATTTCCGGCG 58.906 36.000 0.00 0.00 0.00 6.46
592 595 6.072064 TGGTTTTATTTTAGAATTTCCGGCGA 60.072 34.615 9.30 0.00 0.00 5.54
593 596 6.976349 GGTTTTATTTTAGAATTTCCGGCGAT 59.024 34.615 9.30 0.00 0.00 4.58
594 597 7.043656 GGTTTTATTTTAGAATTTCCGGCGATG 60.044 37.037 9.30 0.00 0.00 3.84
595 598 3.414549 TTTTAGAATTTCCGGCGATGC 57.585 42.857 9.30 0.00 0.00 3.91
596 599 0.934496 TTAGAATTTCCGGCGATGCG 59.066 50.000 9.30 0.00 0.00 4.73
613 616 2.258591 GCGTTCAGTGCGAGGAGA 59.741 61.111 0.00 0.00 0.00 3.71
614 617 2.089349 GCGTTCAGTGCGAGGAGAC 61.089 63.158 0.00 0.00 0.00 3.36
616 619 0.730834 CGTTCAGTGCGAGGAGACTG 60.731 60.000 0.00 0.00 44.43 3.51
617 620 0.598562 GTTCAGTGCGAGGAGACTGA 59.401 55.000 0.00 0.00 45.39 3.41
618 621 0.598562 TTCAGTGCGAGGAGACTGAC 59.401 55.000 0.00 0.00 46.43 3.51
619 622 0.250945 TCAGTGCGAGGAGACTGACT 60.251 55.000 0.00 0.00 42.88 3.41
620 623 0.600557 CAGTGCGAGGAGACTGACTT 59.399 55.000 0.00 0.00 44.43 3.01
621 624 0.885196 AGTGCGAGGAGACTGACTTC 59.115 55.000 0.00 0.00 44.43 3.01
622 625 0.109039 GTGCGAGGAGACTGACTTCC 60.109 60.000 0.00 0.00 44.43 3.46
623 626 0.251386 TGCGAGGAGACTGACTTCCT 60.251 55.000 0.00 0.00 44.43 3.36
624 627 1.004394 TGCGAGGAGACTGACTTCCTA 59.996 52.381 0.00 0.00 44.43 2.94
625 628 2.093106 GCGAGGAGACTGACTTCCTAA 58.907 52.381 0.00 0.00 44.43 2.69
626 629 2.492484 GCGAGGAGACTGACTTCCTAAA 59.508 50.000 0.00 0.00 44.43 1.85
627 630 3.056749 GCGAGGAGACTGACTTCCTAAAA 60.057 47.826 0.00 0.00 44.43 1.52
628 631 4.487019 CGAGGAGACTGACTTCCTAAAAC 58.513 47.826 0.00 0.00 44.43 2.43
629 632 4.618693 CGAGGAGACTGACTTCCTAAAACC 60.619 50.000 0.00 0.00 44.43 3.27
630 633 4.494591 AGGAGACTGACTTCCTAAAACCT 58.505 43.478 0.00 0.00 41.13 3.50
631 634 4.528987 AGGAGACTGACTTCCTAAAACCTC 59.471 45.833 0.00 0.00 41.13 3.85
632 635 4.283722 GGAGACTGACTTCCTAAAACCTCA 59.716 45.833 0.00 0.00 0.00 3.86
633 636 5.221661 GGAGACTGACTTCCTAAAACCTCAA 60.222 44.000 0.00 0.00 0.00 3.02
634 637 6.248569 AGACTGACTTCCTAAAACCTCAAA 57.751 37.500 0.00 0.00 0.00 2.69
635 638 6.659824 AGACTGACTTCCTAAAACCTCAAAA 58.340 36.000 0.00 0.00 0.00 2.44
636 639 7.290813 AGACTGACTTCCTAAAACCTCAAAAT 58.709 34.615 0.00 0.00 0.00 1.82
637 640 7.229506 AGACTGACTTCCTAAAACCTCAAAATG 59.770 37.037 0.00 0.00 0.00 2.32
638 641 7.060421 ACTGACTTCCTAAAACCTCAAAATGA 58.940 34.615 0.00 0.00 0.00 2.57
639 642 7.725844 ACTGACTTCCTAAAACCTCAAAATGAT 59.274 33.333 0.00 0.00 0.00 2.45
640 643 9.231297 CTGACTTCCTAAAACCTCAAAATGATA 57.769 33.333 0.00 0.00 0.00 2.15
641 644 9.753674 TGACTTCCTAAAACCTCAAAATGATAT 57.246 29.630 0.00 0.00 0.00 1.63
643 646 8.470002 ACTTCCTAAAACCTCAAAATGATATGC 58.530 33.333 0.00 0.00 0.00 3.14
644 647 7.346751 TCCTAAAACCTCAAAATGATATGCC 57.653 36.000 0.00 0.00 0.00 4.40
645 648 6.039270 TCCTAAAACCTCAAAATGATATGCCG 59.961 38.462 0.00 0.00 0.00 5.69
646 649 5.913137 AAAACCTCAAAATGATATGCCGA 57.087 34.783 0.00 0.00 0.00 5.54
647 650 4.900635 AACCTCAAAATGATATGCCGAC 57.099 40.909 0.00 0.00 0.00 4.79
648 651 4.156455 ACCTCAAAATGATATGCCGACT 57.844 40.909 0.00 0.00 0.00 4.18
649 652 4.130118 ACCTCAAAATGATATGCCGACTC 58.870 43.478 0.00 0.00 0.00 3.36
650 653 3.185188 CCTCAAAATGATATGCCGACTCG 59.815 47.826 0.00 0.00 0.00 4.18
663 666 2.043495 CGACTCGGATGTGCTCATAG 57.957 55.000 0.32 0.00 34.06 2.23
664 667 1.335415 CGACTCGGATGTGCTCATAGG 60.335 57.143 0.32 0.00 34.06 2.57
665 668 1.000283 GACTCGGATGTGCTCATAGGG 60.000 57.143 0.32 1.94 34.06 3.53
666 669 0.319728 CTCGGATGTGCTCATAGGGG 59.680 60.000 0.32 0.00 34.06 4.79
667 670 0.398522 TCGGATGTGCTCATAGGGGT 60.399 55.000 0.32 0.00 34.06 4.95
668 671 1.133294 TCGGATGTGCTCATAGGGGTA 60.133 52.381 0.32 0.00 34.06 3.69
669 672 1.273606 CGGATGTGCTCATAGGGGTAG 59.726 57.143 0.32 0.00 34.06 3.18
670 673 1.625818 GGATGTGCTCATAGGGGTAGG 59.374 57.143 0.32 0.00 34.06 3.18
671 674 2.609747 GATGTGCTCATAGGGGTAGGA 58.390 52.381 0.32 0.00 34.06 2.94
672 675 2.795291 TGTGCTCATAGGGGTAGGAT 57.205 50.000 0.00 0.00 0.00 3.24
673 676 2.329267 TGTGCTCATAGGGGTAGGATG 58.671 52.381 0.00 0.00 0.00 3.51
674 677 2.330216 GTGCTCATAGGGGTAGGATGT 58.670 52.381 0.00 0.00 0.00 3.06
675 678 2.037772 GTGCTCATAGGGGTAGGATGTG 59.962 54.545 0.00 0.00 0.00 3.21
676 679 1.002544 GCTCATAGGGGTAGGATGTGC 59.997 57.143 0.00 0.00 0.00 4.57
677 680 1.273606 CTCATAGGGGTAGGATGTGCG 59.726 57.143 0.00 0.00 0.00 5.34
678 681 1.048601 CATAGGGGTAGGATGTGCGT 58.951 55.000 0.00 0.00 0.00 5.24
679 682 1.048601 ATAGGGGTAGGATGTGCGTG 58.951 55.000 0.00 0.00 0.00 5.34
680 683 0.324923 TAGGGGTAGGATGTGCGTGT 60.325 55.000 0.00 0.00 0.00 4.49
681 684 1.449601 GGGGTAGGATGTGCGTGTG 60.450 63.158 0.00 0.00 0.00 3.82
682 685 1.295423 GGGTAGGATGTGCGTGTGT 59.705 57.895 0.00 0.00 0.00 3.72
683 686 0.533491 GGGTAGGATGTGCGTGTGTA 59.467 55.000 0.00 0.00 0.00 2.90
684 687 1.636988 GGTAGGATGTGCGTGTGTAC 58.363 55.000 0.00 0.00 0.00 2.90
699 702 6.009512 CGTGTGTACGTTCATAAAGATGAG 57.990 41.667 0.00 0.00 44.99 2.90
700 703 5.571741 CGTGTGTACGTTCATAAAGATGAGT 59.428 40.000 0.00 0.00 44.99 3.41
701 704 6.452480 CGTGTGTACGTTCATAAAGATGAGTG 60.452 42.308 0.00 0.00 44.99 3.51
702 705 6.365247 GTGTGTACGTTCATAAAGATGAGTGT 59.635 38.462 0.00 0.00 43.03 3.55
703 706 7.539710 GTGTGTACGTTCATAAAGATGAGTGTA 59.460 37.037 0.00 0.00 43.03 2.90
704 707 8.248253 TGTGTACGTTCATAAAGATGAGTGTAT 58.752 33.333 0.00 0.00 43.03 2.29
705 708 8.532341 GTGTACGTTCATAAAGATGAGTGTATG 58.468 37.037 0.00 0.00 43.03 2.39
706 709 6.589830 ACGTTCATAAAGATGAGTGTATGC 57.410 37.500 0.00 0.00 43.03 3.14
707 710 5.232202 ACGTTCATAAAGATGAGTGTATGCG 59.768 40.000 0.00 0.00 43.03 4.73
708 711 5.435557 GTTCATAAAGATGAGTGTATGCGC 58.564 41.667 0.00 0.00 43.03 6.09
709 712 3.735746 TCATAAAGATGAGTGTATGCGCG 59.264 43.478 0.00 0.00 37.15 6.86
710 713 2.010145 AAAGATGAGTGTATGCGCGT 57.990 45.000 8.43 7.55 0.00 6.01
711 714 2.863401 AAGATGAGTGTATGCGCGTA 57.137 45.000 8.43 4.92 0.00 4.42
712 715 3.371102 AAGATGAGTGTATGCGCGTAT 57.629 42.857 15.52 15.52 0.00 3.06
713 716 2.935042 AGATGAGTGTATGCGCGTATC 58.065 47.619 14.48 7.18 0.00 2.24
714 717 2.554462 AGATGAGTGTATGCGCGTATCT 59.446 45.455 14.48 13.87 32.22 1.98
715 718 3.751698 AGATGAGTGTATGCGCGTATCTA 59.248 43.478 14.48 0.53 33.91 1.98
716 719 4.396478 AGATGAGTGTATGCGCGTATCTAT 59.604 41.667 14.48 3.87 33.91 1.98
717 720 3.821841 TGAGTGTATGCGCGTATCTATG 58.178 45.455 14.48 0.00 0.00 2.23
718 721 3.500680 TGAGTGTATGCGCGTATCTATGA 59.499 43.478 14.48 0.00 0.00 2.15
719 722 4.084889 AGTGTATGCGCGTATCTATGAG 57.915 45.455 14.48 0.00 0.00 2.90
720 723 2.594654 GTGTATGCGCGTATCTATGAGC 59.405 50.000 14.48 0.00 38.31 4.26
725 728 2.818814 CGCGTATCTATGAGCGTTTG 57.181 50.000 0.00 0.00 46.48 2.93
726 729 2.117137 CGCGTATCTATGAGCGTTTGT 58.883 47.619 0.00 0.00 46.48 2.83
727 730 2.097877 CGCGTATCTATGAGCGTTTGTG 60.098 50.000 0.00 0.00 46.48 3.33
728 731 2.858344 GCGTATCTATGAGCGTTTGTGT 59.142 45.455 0.00 0.00 0.00 3.72
729 732 3.061139 GCGTATCTATGAGCGTTTGTGTC 60.061 47.826 0.00 0.00 0.00 3.67
730 733 4.352039 CGTATCTATGAGCGTTTGTGTCT 58.648 43.478 0.00 0.00 0.00 3.41
731 734 4.205181 CGTATCTATGAGCGTTTGTGTCTG 59.795 45.833 0.00 0.00 0.00 3.51
732 735 3.660501 TCTATGAGCGTTTGTGTCTGT 57.339 42.857 0.00 0.00 0.00 3.41
733 736 4.776795 TCTATGAGCGTTTGTGTCTGTA 57.223 40.909 0.00 0.00 0.00 2.74
734 737 4.482386 TCTATGAGCGTTTGTGTCTGTAC 58.518 43.478 0.00 0.00 0.00 2.90
735 738 2.882927 TGAGCGTTTGTGTCTGTACT 57.117 45.000 0.00 0.00 0.00 2.73
736 739 3.994204 TGAGCGTTTGTGTCTGTACTA 57.006 42.857 0.00 0.00 0.00 1.82
737 740 4.514781 TGAGCGTTTGTGTCTGTACTAT 57.485 40.909 0.00 0.00 0.00 2.12
738 741 4.234574 TGAGCGTTTGTGTCTGTACTATG 58.765 43.478 0.00 0.00 0.00 2.23
739 742 4.235360 GAGCGTTTGTGTCTGTACTATGT 58.765 43.478 0.00 0.00 0.00 2.29
740 743 4.628074 AGCGTTTGTGTCTGTACTATGTT 58.372 39.130 0.00 0.00 0.00 2.71
741 744 5.775686 AGCGTTTGTGTCTGTACTATGTTA 58.224 37.500 0.00 0.00 0.00 2.41
742 745 6.218019 AGCGTTTGTGTCTGTACTATGTTAA 58.782 36.000 0.00 0.00 0.00 2.01
743 746 6.702723 AGCGTTTGTGTCTGTACTATGTTAAA 59.297 34.615 0.00 0.00 0.00 1.52
744 747 7.225145 AGCGTTTGTGTCTGTACTATGTTAAAA 59.775 33.333 0.00 0.00 0.00 1.52
745 748 7.851963 GCGTTTGTGTCTGTACTATGTTAAAAA 59.148 33.333 0.00 0.00 0.00 1.94
765 768 4.939509 AAAATACACACGCACATCCTAC 57.060 40.909 0.00 0.00 0.00 3.18
766 769 3.887621 AATACACACGCACATCCTACT 57.112 42.857 0.00 0.00 0.00 2.57
767 770 3.887621 ATACACACGCACATCCTACTT 57.112 42.857 0.00 0.00 0.00 2.24
768 771 2.543777 ACACACGCACATCCTACTTT 57.456 45.000 0.00 0.00 0.00 2.66
769 772 3.671008 ACACACGCACATCCTACTTTA 57.329 42.857 0.00 0.00 0.00 1.85
770 773 4.202245 ACACACGCACATCCTACTTTAT 57.798 40.909 0.00 0.00 0.00 1.40
771 774 3.932710 ACACACGCACATCCTACTTTATG 59.067 43.478 0.00 0.00 0.00 1.90
772 775 4.180817 CACACGCACATCCTACTTTATGA 58.819 43.478 0.00 0.00 0.00 2.15
773 776 4.268644 CACACGCACATCCTACTTTATGAG 59.731 45.833 0.00 0.00 0.00 2.90
774 777 3.246226 CACGCACATCCTACTTTATGAGC 59.754 47.826 0.00 0.00 36.65 4.26
775 778 3.118775 ACGCACATCCTACTTTATGAGCA 60.119 43.478 0.00 0.00 38.95 4.26
776 779 4.060900 CGCACATCCTACTTTATGAGCAT 58.939 43.478 0.00 0.00 38.95 3.79
777 780 4.151335 CGCACATCCTACTTTATGAGCATC 59.849 45.833 0.00 0.00 38.95 3.91
778 781 5.303971 GCACATCCTACTTTATGAGCATCT 58.696 41.667 0.00 0.00 38.88 2.90
779 782 6.459066 GCACATCCTACTTTATGAGCATCTA 58.541 40.000 0.00 0.00 38.88 1.98
780 783 6.589523 GCACATCCTACTTTATGAGCATCTAG 59.410 42.308 0.00 0.00 38.88 2.43
781 784 7.524532 GCACATCCTACTTTATGAGCATCTAGA 60.525 40.741 0.00 0.00 38.88 2.43
782 785 8.363390 CACATCCTACTTTATGAGCATCTAGAA 58.637 37.037 0.00 0.00 34.92 2.10
783 786 9.099071 ACATCCTACTTTATGAGCATCTAGAAT 57.901 33.333 0.00 0.00 34.92 2.40
784 787 9.941325 CATCCTACTTTATGAGCATCTAGAATT 57.059 33.333 0.00 0.00 34.92 2.17
785 788 9.941325 ATCCTACTTTATGAGCATCTAGAATTG 57.059 33.333 0.00 0.00 34.92 2.32
786 789 8.370940 TCCTACTTTATGAGCATCTAGAATTGG 58.629 37.037 0.00 0.00 34.92 3.16
787 790 6.874288 ACTTTATGAGCATCTAGAATTGGC 57.126 37.500 0.00 0.00 34.92 4.52
788 791 5.767168 ACTTTATGAGCATCTAGAATTGGCC 59.233 40.000 0.00 0.00 34.92 5.36
789 792 2.245159 TGAGCATCTAGAATTGGCCG 57.755 50.000 0.00 0.00 34.92 6.13
790 793 1.202687 TGAGCATCTAGAATTGGCCGG 60.203 52.381 0.00 0.00 34.92 6.13
791 794 0.536006 AGCATCTAGAATTGGCCGGC 60.536 55.000 21.18 21.18 0.00 6.13
792 795 0.819259 GCATCTAGAATTGGCCGGCA 60.819 55.000 30.85 9.36 0.00 5.69
793 796 1.901591 CATCTAGAATTGGCCGGCAT 58.098 50.000 30.85 11.77 0.00 4.40
794 797 1.538512 CATCTAGAATTGGCCGGCATG 59.461 52.381 30.85 15.84 0.00 4.06
795 798 0.546122 TCTAGAATTGGCCGGCATGT 59.454 50.000 30.85 10.15 0.00 3.21
796 799 0.947244 CTAGAATTGGCCGGCATGTC 59.053 55.000 30.85 18.84 0.00 3.06
797 800 0.813610 TAGAATTGGCCGGCATGTCG 60.814 55.000 30.85 13.99 0.00 4.35
798 801 3.756413 GAATTGGCCGGCATGTCGC 62.756 63.158 30.85 10.31 41.28 5.19
808 811 3.911989 GCATGTCGCCTTGAGATTG 57.088 52.632 0.00 0.00 32.94 2.67
809 812 1.372582 GCATGTCGCCTTGAGATTGA 58.627 50.000 0.00 0.00 32.94 2.57
810 813 1.063174 GCATGTCGCCTTGAGATTGAC 59.937 52.381 0.00 0.00 32.94 3.18
811 814 1.325640 CATGTCGCCTTGAGATTGACG 59.674 52.381 0.00 0.00 32.32 4.35
812 815 0.601057 TGTCGCCTTGAGATTGACGA 59.399 50.000 0.00 0.00 32.32 4.20
813 816 1.272781 GTCGCCTTGAGATTGACGAG 58.727 55.000 0.00 0.00 0.00 4.18
814 817 0.173481 TCGCCTTGAGATTGACGAGG 59.827 55.000 0.00 0.00 40.75 4.63
815 818 0.108615 CGCCTTGAGATTGACGAGGT 60.109 55.000 0.00 0.00 40.14 3.85
816 819 1.646189 GCCTTGAGATTGACGAGGTC 58.354 55.000 0.00 0.00 40.14 3.85
817 820 1.066858 GCCTTGAGATTGACGAGGTCA 60.067 52.381 0.00 0.00 41.09 4.02
818 821 2.419297 GCCTTGAGATTGACGAGGTCAT 60.419 50.000 0.00 0.00 42.40 3.06
819 822 3.452474 CCTTGAGATTGACGAGGTCATC 58.548 50.000 0.00 0.79 42.40 2.92
820 823 3.118992 CCTTGAGATTGACGAGGTCATCA 60.119 47.826 0.00 0.00 42.40 3.07
821 824 3.790152 TGAGATTGACGAGGTCATCAG 57.210 47.619 0.00 0.00 42.40 2.90
822 825 3.356290 TGAGATTGACGAGGTCATCAGA 58.644 45.455 0.00 0.00 42.40 3.27
823 826 3.763897 TGAGATTGACGAGGTCATCAGAA 59.236 43.478 0.00 0.00 42.40 3.02
824 827 4.109050 GAGATTGACGAGGTCATCAGAAC 58.891 47.826 0.00 0.00 42.40 3.01
825 828 2.347697 TTGACGAGGTCATCAGAACG 57.652 50.000 0.00 0.00 42.40 3.95
826 829 1.244816 TGACGAGGTCATCAGAACGT 58.755 50.000 0.00 0.00 37.67 3.99
827 830 2.429478 TGACGAGGTCATCAGAACGTA 58.571 47.619 0.00 0.00 37.67 3.57
828 831 3.014623 TGACGAGGTCATCAGAACGTAT 58.985 45.455 0.00 0.00 37.67 3.06
829 832 3.064958 TGACGAGGTCATCAGAACGTATC 59.935 47.826 0.00 0.00 37.67 2.24
830 833 3.014623 ACGAGGTCATCAGAACGTATCA 58.985 45.455 0.00 0.00 36.28 2.15
831 834 3.632604 ACGAGGTCATCAGAACGTATCAT 59.367 43.478 0.00 0.00 36.28 2.45
832 835 4.820173 ACGAGGTCATCAGAACGTATCATA 59.180 41.667 0.00 0.00 36.28 2.15
833 836 5.049336 ACGAGGTCATCAGAACGTATCATAG 60.049 44.000 0.00 0.00 36.28 2.23
834 837 5.049336 CGAGGTCATCAGAACGTATCATAGT 60.049 44.000 0.00 0.00 36.28 2.12
835 838 6.320494 AGGTCATCAGAACGTATCATAGTC 57.680 41.667 0.00 0.00 36.28 2.59
836 839 5.049336 AGGTCATCAGAACGTATCATAGTCG 60.049 44.000 0.00 0.00 36.28 4.18
837 840 5.277876 GGTCATCAGAACGTATCATAGTCGT 60.278 44.000 0.00 0.00 39.49 4.34
838 841 5.846994 GTCATCAGAACGTATCATAGTCGTC 59.153 44.000 0.00 0.00 36.80 4.20
839 842 4.448363 TCAGAACGTATCATAGTCGTCG 57.552 45.455 0.00 0.00 36.80 5.12
840 843 3.246936 TCAGAACGTATCATAGTCGTCGG 59.753 47.826 0.00 0.00 36.80 4.79
841 844 3.246936 CAGAACGTATCATAGTCGTCGGA 59.753 47.826 0.00 0.00 36.80 4.55
842 845 3.873361 AGAACGTATCATAGTCGTCGGAA 59.127 43.478 0.00 0.00 36.80 4.30
843 846 4.333649 AGAACGTATCATAGTCGTCGGAAA 59.666 41.667 0.00 0.00 36.80 3.13
844 847 4.825546 ACGTATCATAGTCGTCGGAAAT 57.174 40.909 0.00 0.00 32.26 2.17
902 907 6.149633 AGAAATCTGTTTGTGTATTTTCCGC 58.850 36.000 0.00 0.00 0.00 5.54
903 908 3.529634 TCTGTTTGTGTATTTTCCGCG 57.470 42.857 0.00 0.00 0.00 6.46
1518 5669 2.895424 CCAGGTCCTGGTGTGGGAC 61.895 68.421 27.80 4.48 45.82 4.46
1655 5809 4.079850 CAGCTGCCACTCGAGCCT 62.080 66.667 13.61 0.00 35.69 4.58
1746 5900 1.833630 TCATGGGGCGATCTCATATCC 59.166 52.381 0.00 0.00 0.00 2.59
1934 6088 3.619900 TCATGGCCTCTACCTGAGTAT 57.380 47.619 3.32 0.00 41.11 2.12
1941 6095 1.342819 CTCTACCTGAGTATGCTGGGC 59.657 57.143 0.00 0.00 37.99 5.36
2044 6198 3.818787 GGATGCCGGCACAAGCAG 61.819 66.667 35.50 0.00 44.61 4.24
2109 6263 1.178534 ATCTGCAAACGGTGTTGGGG 61.179 55.000 0.00 0.00 0.00 4.96
2356 6516 7.072030 GTGTCTTCTGTTACTGTAGCAATTTG 58.928 38.462 5.86 0.00 0.00 2.32
2456 6617 0.526662 GCAGTACTAGACAGTGCGGT 59.473 55.000 11.38 0.00 41.80 5.68
2645 6809 3.544684 TGCGGATCTTGATACTTGCAAT 58.455 40.909 0.00 0.00 0.00 3.56
2646 6810 3.947196 TGCGGATCTTGATACTTGCAATT 59.053 39.130 0.00 0.00 0.00 2.32
2776 6940 7.878644 GTCACTTTATTTAACTCTGGAGAACCT 59.121 37.037 4.49 0.00 37.04 3.50
2887 7054 2.040412 GGGAGAGGAAACACTGAACCAT 59.960 50.000 0.00 0.00 0.00 3.55
2889 7056 4.080299 GGGAGAGGAAACACTGAACCATAT 60.080 45.833 0.00 0.00 0.00 1.78
2952 7119 6.088749 GTGACTTCAGATTATATGCTGCTACG 59.911 42.308 0.00 0.00 32.27 3.51
3067 7234 6.535508 GCTCAAGTTAGATAAACATTCGGACT 59.464 38.462 0.00 0.00 40.83 3.85
3070 7237 8.525316 TCAAGTTAGATAAACATTCGGACTGTA 58.475 33.333 1.14 0.00 40.83 2.74
3129 7296 4.350245 GCTAAACTTAAATTGGGAGGGGT 58.650 43.478 0.00 0.00 0.00 4.95
3131 7298 2.919772 ACTTAAATTGGGAGGGGTGG 57.080 50.000 0.00 0.00 0.00 4.61
3132 7299 1.273041 ACTTAAATTGGGAGGGGTGGC 60.273 52.381 0.00 0.00 0.00 5.01
3151 7369 1.338200 GCGATGAAGAGGGAACAGTGT 60.338 52.381 0.00 0.00 0.00 3.55
3154 7372 4.177026 CGATGAAGAGGGAACAGTGTAAG 58.823 47.826 0.00 0.00 0.00 2.34
3156 7374 5.552178 GATGAAGAGGGAACAGTGTAAGTT 58.448 41.667 0.00 0.00 0.00 2.66
3157 7375 5.367945 TGAAGAGGGAACAGTGTAAGTTT 57.632 39.130 0.00 0.00 0.00 2.66
3159 7377 6.285990 TGAAGAGGGAACAGTGTAAGTTTAC 58.714 40.000 0.00 0.00 0.00 2.01
3162 7380 6.896883 AGAGGGAACAGTGTAAGTTTACTTT 58.103 36.000 0.00 0.00 37.40 2.66
3164 7382 8.148999 AGAGGGAACAGTGTAAGTTTACTTTAG 58.851 37.037 0.00 0.00 37.40 1.85
3166 7384 6.072838 GGGAACAGTGTAAGTTTACTTTAGGC 60.073 42.308 0.00 0.00 37.40 3.93
3167 7385 6.072838 GGAACAGTGTAAGTTTACTTTAGGCC 60.073 42.308 0.00 0.00 37.40 5.19
3168 7386 6.183810 ACAGTGTAAGTTTACTTTAGGCCT 57.816 37.500 11.78 11.78 37.40 5.19
3170 7388 5.995897 CAGTGTAAGTTTACTTTAGGCCTGT 59.004 40.000 17.99 7.60 37.40 4.00
3171 7389 6.485648 CAGTGTAAGTTTACTTTAGGCCTGTT 59.514 38.462 17.99 0.00 37.40 3.16
3172 7390 6.709397 AGTGTAAGTTTACTTTAGGCCTGTTC 59.291 38.462 17.99 0.00 37.40 3.18
3173 7391 5.697633 TGTAAGTTTACTTTAGGCCTGTTCG 59.302 40.000 17.99 3.39 37.40 3.95
3174 7392 3.671716 AGTTTACTTTAGGCCTGTTCGG 58.328 45.455 17.99 3.46 0.00 4.30
3175 7393 5.576602 AAGTTTACTTTAGGCCTGTTCGGC 61.577 45.833 17.99 0.00 45.62 5.54
3183 7401 3.590824 CCTGTTCGGCAATCCACC 58.409 61.111 0.00 0.00 0.00 4.61
3190 7408 4.467084 GGCAATCCACCGCTCCGA 62.467 66.667 0.00 0.00 0.00 4.55
3191 7409 2.892425 GCAATCCACCGCTCCGAG 60.892 66.667 0.00 0.00 0.00 4.63
3192 7410 2.892640 CAATCCACCGCTCCGAGA 59.107 61.111 0.00 0.00 0.00 4.04
3194 7412 0.391130 CAATCCACCGCTCCGAGAAA 60.391 55.000 0.00 0.00 0.00 2.52
3195 7413 0.541863 AATCCACCGCTCCGAGAAAT 59.458 50.000 0.00 0.00 0.00 2.17
3196 7414 1.410004 ATCCACCGCTCCGAGAAATA 58.590 50.000 0.00 0.00 0.00 1.40
3197 7415 0.458669 TCCACCGCTCCGAGAAATAC 59.541 55.000 0.00 0.00 0.00 1.89
3199 7417 1.404986 CCACCGCTCCGAGAAATACAA 60.405 52.381 0.00 0.00 0.00 2.41
3200 7418 1.927174 CACCGCTCCGAGAAATACAAG 59.073 52.381 0.00 0.00 0.00 3.16
3201 7419 1.822990 ACCGCTCCGAGAAATACAAGA 59.177 47.619 0.00 0.00 0.00 3.02
3202 7420 2.232941 ACCGCTCCGAGAAATACAAGAA 59.767 45.455 0.00 0.00 0.00 2.52
3205 7423 4.363999 CGCTCCGAGAAATACAAGAATCT 58.636 43.478 0.00 0.00 0.00 2.40
3207 7425 5.399892 CGCTCCGAGAAATACAAGAATCTAC 59.600 44.000 0.00 0.00 0.00 2.59
3208 7426 5.399892 GCTCCGAGAAATACAAGAATCTACG 59.600 44.000 0.00 0.00 0.00 3.51
3209 7427 5.828747 TCCGAGAAATACAAGAATCTACGG 58.171 41.667 0.00 0.00 35.67 4.02
3210 7428 5.591472 TCCGAGAAATACAAGAATCTACGGA 59.409 40.000 0.00 0.00 38.28 4.69
3211 7429 5.915758 CCGAGAAATACAAGAATCTACGGAG 59.084 44.000 0.00 0.00 36.03 4.63
3212 7430 5.399892 CGAGAAATACAAGAATCTACGGAGC 59.600 44.000 0.00 0.00 0.00 4.70
3213 7431 6.222038 AGAAATACAAGAATCTACGGAGCA 57.778 37.500 0.00 0.00 0.00 4.26
3214 7432 6.821388 AGAAATACAAGAATCTACGGAGCAT 58.179 36.000 0.00 0.00 0.00 3.79
3215 7433 6.926272 AGAAATACAAGAATCTACGGAGCATC 59.074 38.462 0.00 0.00 0.00 3.91
3216 7434 6.412362 AATACAAGAATCTACGGAGCATCT 57.588 37.500 0.00 0.00 33.73 2.90
3217 7435 4.314740 ACAAGAATCTACGGAGCATCTC 57.685 45.455 2.91 0.00 33.73 2.75
3220 7438 5.105146 ACAAGAATCTACGGAGCATCTCTTT 60.105 40.000 2.91 0.00 33.73 2.52
3222 7440 4.892934 AGAATCTACGGAGCATCTCTTTCT 59.107 41.667 0.00 0.00 33.73 2.52
3223 7441 4.846779 ATCTACGGAGCATCTCTTTCTC 57.153 45.455 0.00 0.00 33.73 2.87
3224 7442 2.952978 TCTACGGAGCATCTCTTTCTCC 59.047 50.000 0.00 0.00 42.19 3.71
3225 7443 1.561643 ACGGAGCATCTCTTTCTCCA 58.438 50.000 8.08 0.00 45.04 3.86
3226 7444 1.205893 ACGGAGCATCTCTTTCTCCAC 59.794 52.381 8.08 0.00 45.04 4.02
3227 7445 1.480137 CGGAGCATCTCTTTCTCCACT 59.520 52.381 8.08 0.00 45.04 4.00
3228 7446 2.481104 CGGAGCATCTCTTTCTCCACTC 60.481 54.545 8.08 0.00 45.04 3.51
3229 7447 2.158971 GGAGCATCTCTTTCTCCACTCC 60.159 54.545 2.88 0.00 44.38 3.85
3230 7448 1.480137 AGCATCTCTTTCTCCACTCCG 59.520 52.381 0.00 0.00 0.00 4.63
3231 7449 1.205893 GCATCTCTTTCTCCACTCCGT 59.794 52.381 0.00 0.00 0.00 4.69
3232 7450 2.427453 GCATCTCTTTCTCCACTCCGTA 59.573 50.000 0.00 0.00 0.00 4.02
3233 7451 3.068873 GCATCTCTTTCTCCACTCCGTAT 59.931 47.826 0.00 0.00 0.00 3.06
3234 7452 4.442192 GCATCTCTTTCTCCACTCCGTATT 60.442 45.833 0.00 0.00 0.00 1.89
3235 7453 5.665459 CATCTCTTTCTCCACTCCGTATTT 58.335 41.667 0.00 0.00 0.00 1.40
3236 7454 5.740290 TCTCTTTCTCCACTCCGTATTTT 57.260 39.130 0.00 0.00 0.00 1.82
3237 7455 5.721232 TCTCTTTCTCCACTCCGTATTTTC 58.279 41.667 0.00 0.00 0.00 2.29
3238 7456 5.245301 TCTCTTTCTCCACTCCGTATTTTCA 59.755 40.000 0.00 0.00 0.00 2.69
3239 7457 5.860611 TCTTTCTCCACTCCGTATTTTCAA 58.139 37.500 0.00 0.00 0.00 2.69
3240 7458 5.699458 TCTTTCTCCACTCCGTATTTTCAAC 59.301 40.000 0.00 0.00 0.00 3.18
3241 7459 4.884668 TCTCCACTCCGTATTTTCAACT 57.115 40.909 0.00 0.00 0.00 3.16
3242 7460 4.566004 TCTCCACTCCGTATTTTCAACTG 58.434 43.478 0.00 0.00 0.00 3.16
3243 7461 4.282449 TCTCCACTCCGTATTTTCAACTGA 59.718 41.667 0.00 0.00 0.00 3.41
3244 7462 4.963373 TCCACTCCGTATTTTCAACTGAA 58.037 39.130 0.00 0.00 0.00 3.02
3245 7463 4.994852 TCCACTCCGTATTTTCAACTGAAG 59.005 41.667 0.00 0.00 35.21 3.02
3246 7464 4.378459 CCACTCCGTATTTTCAACTGAAGC 60.378 45.833 0.00 0.00 35.21 3.86
3247 7465 4.452455 CACTCCGTATTTTCAACTGAAGCT 59.548 41.667 0.00 0.00 35.21 3.74
3248 7466 4.691216 ACTCCGTATTTTCAACTGAAGCTC 59.309 41.667 0.00 0.00 35.21 4.09
3249 7467 3.678072 TCCGTATTTTCAACTGAAGCTCG 59.322 43.478 0.00 0.00 35.21 5.03
3250 7468 3.181520 CCGTATTTTCAACTGAAGCTCGG 60.182 47.826 0.00 10.51 35.21 4.63
3251 7469 3.432252 CGTATTTTCAACTGAAGCTCGGT 59.568 43.478 0.00 0.00 37.65 4.69
3252 7470 4.434330 CGTATTTTCAACTGAAGCTCGGTC 60.434 45.833 0.00 0.00 34.28 4.79
3253 7471 1.878953 TTTCAACTGAAGCTCGGTCC 58.121 50.000 0.00 0.00 34.28 4.46
3254 7472 0.319555 TTCAACTGAAGCTCGGTCCG 60.320 55.000 4.39 4.39 34.28 4.79
3255 7473 2.048127 AACTGAAGCTCGGTCCGC 60.048 61.111 6.34 0.00 34.28 5.54
3256 7474 2.574955 AACTGAAGCTCGGTCCGCT 61.575 57.895 6.34 0.00 34.28 5.52
3257 7475 2.202676 CTGAAGCTCGGTCCGCTC 60.203 66.667 6.34 0.00 36.56 5.03
3258 7476 4.116328 TGAAGCTCGGTCCGCTCG 62.116 66.667 6.34 0.00 36.56 5.03
3259 7477 4.856607 GAAGCTCGGTCCGCTCGG 62.857 72.222 6.34 1.14 36.56 4.63
3278 7496 4.838486 GAGCGGAGTCGTGCGGAG 62.838 72.222 0.90 0.00 38.11 4.63
3297 7515 2.182030 GGCGAGACTCCGAACAGG 59.818 66.667 0.00 0.00 42.97 4.00
3298 7516 2.507324 GCGAGACTCCGAACAGGC 60.507 66.667 0.00 0.00 40.77 4.85
3299 7517 2.182030 CGAGACTCCGAACAGGCC 59.818 66.667 0.00 0.00 40.77 5.19
3300 7518 2.344203 CGAGACTCCGAACAGGCCT 61.344 63.158 0.00 0.00 40.77 5.19
3348 7566 4.799564 TTCCCAGGTTGCATTTTATCAC 57.200 40.909 0.00 0.00 0.00 3.06
3349 7567 3.772387 TCCCAGGTTGCATTTTATCACA 58.228 40.909 0.00 0.00 0.00 3.58
3371 7589 9.474920 TCACATCTGTTATTGAAAATTTTGGTC 57.525 29.630 8.47 0.00 0.00 4.02
3392 7610 2.067013 GCCGGAGTGTTTACTGAAGAC 58.933 52.381 5.05 0.00 37.25 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 4.560128 TGATCTTCGTGAGAGTTCTTTGG 58.440 43.478 0.00 0.00 43.69 3.28
112 113 1.662122 GTCAATTACGCCTTGGGTACG 59.338 52.381 0.00 0.00 30.92 3.67
394 396 6.030548 TGAAGTTCATGTGTTGGTTTCAAA 57.969 33.333 0.08 0.00 34.28 2.69
538 541 1.078143 GAGCACCAGGACATGACCC 60.078 63.158 10.77 5.73 0.00 4.46
539 542 1.448540 CGAGCACCAGGACATGACC 60.449 63.158 6.05 6.05 0.00 4.02
540 543 2.103042 GCGAGCACCAGGACATGAC 61.103 63.158 0.00 0.00 0.00 3.06
541 544 1.902765 ATGCGAGCACCAGGACATGA 61.903 55.000 0.00 0.00 0.00 3.07
553 556 7.755582 AAATAAAACCAGAATAAATGCGAGC 57.244 32.000 0.00 0.00 0.00 5.03
563 566 9.869757 CCGGAAATTCTAAAATAAAACCAGAAT 57.130 29.630 0.00 0.00 37.51 2.40
564 567 7.815549 GCCGGAAATTCTAAAATAAAACCAGAA 59.184 33.333 5.05 0.00 0.00 3.02
565 568 7.317390 GCCGGAAATTCTAAAATAAAACCAGA 58.683 34.615 5.05 0.00 0.00 3.86
566 569 6.252655 CGCCGGAAATTCTAAAATAAAACCAG 59.747 38.462 5.05 0.00 0.00 4.00
567 570 6.072064 TCGCCGGAAATTCTAAAATAAAACCA 60.072 34.615 5.05 0.00 0.00 3.67
568 571 6.324042 TCGCCGGAAATTCTAAAATAAAACC 58.676 36.000 5.05 0.00 0.00 3.27
569 572 7.514591 GCATCGCCGGAAATTCTAAAATAAAAC 60.515 37.037 5.05 0.00 0.00 2.43
570 573 6.474102 GCATCGCCGGAAATTCTAAAATAAAA 59.526 34.615 5.05 0.00 0.00 1.52
571 574 5.974751 GCATCGCCGGAAATTCTAAAATAAA 59.025 36.000 5.05 0.00 0.00 1.40
572 575 5.516090 GCATCGCCGGAAATTCTAAAATAA 58.484 37.500 5.05 0.00 0.00 1.40
573 576 4.319190 CGCATCGCCGGAAATTCTAAAATA 60.319 41.667 5.05 0.00 0.00 1.40
574 577 3.548014 CGCATCGCCGGAAATTCTAAAAT 60.548 43.478 5.05 0.00 0.00 1.82
575 578 2.223157 CGCATCGCCGGAAATTCTAAAA 60.223 45.455 5.05 0.00 0.00 1.52
576 579 1.329292 CGCATCGCCGGAAATTCTAAA 59.671 47.619 5.05 0.00 0.00 1.85
577 580 0.934496 CGCATCGCCGGAAATTCTAA 59.066 50.000 5.05 0.00 0.00 2.10
578 581 2.600388 CGCATCGCCGGAAATTCTA 58.400 52.632 5.05 0.00 0.00 2.10
579 582 3.409856 CGCATCGCCGGAAATTCT 58.590 55.556 5.05 0.00 0.00 2.40
590 593 4.833561 CGCACTGAACGCGCATCG 62.834 66.667 5.73 4.51 46.98 3.84
596 599 2.089349 GTCTCCTCGCACTGAACGC 61.089 63.158 0.00 0.00 0.00 4.84
597 600 0.730834 CAGTCTCCTCGCACTGAACG 60.731 60.000 0.00 0.00 42.37 3.95
598 601 0.598562 TCAGTCTCCTCGCACTGAAC 59.401 55.000 0.15 0.00 44.82 3.18
599 602 3.036431 TCAGTCTCCTCGCACTGAA 57.964 52.632 0.15 0.00 44.82 3.02
600 603 0.250945 AGTCAGTCTCCTCGCACTGA 60.251 55.000 0.00 0.00 45.45 3.41
601 604 0.600557 AAGTCAGTCTCCTCGCACTG 59.399 55.000 0.00 0.00 41.32 3.66
602 605 0.885196 GAAGTCAGTCTCCTCGCACT 59.115 55.000 0.00 0.00 0.00 4.40
603 606 0.109039 GGAAGTCAGTCTCCTCGCAC 60.109 60.000 0.00 0.00 0.00 5.34
604 607 0.251386 AGGAAGTCAGTCTCCTCGCA 60.251 55.000 0.00 0.00 0.00 5.10
605 608 1.752683 TAGGAAGTCAGTCTCCTCGC 58.247 55.000 0.00 0.00 34.06 5.03
606 609 4.487019 GTTTTAGGAAGTCAGTCTCCTCG 58.513 47.826 0.00 0.00 34.06 4.63
607 610 4.528987 AGGTTTTAGGAAGTCAGTCTCCTC 59.471 45.833 0.00 0.00 34.06 3.71
608 611 4.494591 AGGTTTTAGGAAGTCAGTCTCCT 58.505 43.478 0.00 0.00 36.45 3.69
609 612 4.283722 TGAGGTTTTAGGAAGTCAGTCTCC 59.716 45.833 0.00 0.00 0.00 3.71
610 613 5.470047 TGAGGTTTTAGGAAGTCAGTCTC 57.530 43.478 0.00 0.00 0.00 3.36
611 614 5.888982 TTGAGGTTTTAGGAAGTCAGTCT 57.111 39.130 0.00 0.00 0.00 3.24
612 615 6.937436 TTTTGAGGTTTTAGGAAGTCAGTC 57.063 37.500 0.00 0.00 0.00 3.51
613 616 7.060421 TCATTTTGAGGTTTTAGGAAGTCAGT 58.940 34.615 0.00 0.00 0.00 3.41
614 617 7.510549 TCATTTTGAGGTTTTAGGAAGTCAG 57.489 36.000 0.00 0.00 0.00 3.51
615 618 9.753674 ATATCATTTTGAGGTTTTAGGAAGTCA 57.246 29.630 0.00 0.00 0.00 3.41
617 620 8.470002 GCATATCATTTTGAGGTTTTAGGAAGT 58.530 33.333 0.00 0.00 0.00 3.01
618 621 7.922811 GGCATATCATTTTGAGGTTTTAGGAAG 59.077 37.037 0.00 0.00 0.00 3.46
619 622 7.416213 CGGCATATCATTTTGAGGTTTTAGGAA 60.416 37.037 0.00 0.00 0.00 3.36
620 623 6.039270 CGGCATATCATTTTGAGGTTTTAGGA 59.961 38.462 0.00 0.00 0.00 2.94
621 624 6.039270 TCGGCATATCATTTTGAGGTTTTAGG 59.961 38.462 0.00 0.00 0.00 2.69
622 625 6.912591 GTCGGCATATCATTTTGAGGTTTTAG 59.087 38.462 0.00 0.00 0.00 1.85
623 626 6.601613 AGTCGGCATATCATTTTGAGGTTTTA 59.398 34.615 0.00 0.00 0.00 1.52
624 627 5.418840 AGTCGGCATATCATTTTGAGGTTTT 59.581 36.000 0.00 0.00 0.00 2.43
625 628 4.949856 AGTCGGCATATCATTTTGAGGTTT 59.050 37.500 0.00 0.00 0.00 3.27
626 629 4.526970 AGTCGGCATATCATTTTGAGGTT 58.473 39.130 0.00 0.00 0.00 3.50
627 630 4.130118 GAGTCGGCATATCATTTTGAGGT 58.870 43.478 0.00 0.00 0.00 3.85
628 631 3.185188 CGAGTCGGCATATCATTTTGAGG 59.815 47.826 4.10 0.00 0.00 3.86
629 632 3.185188 CCGAGTCGGCATATCATTTTGAG 59.815 47.826 20.50 0.00 41.17 3.02
630 633 3.130633 CCGAGTCGGCATATCATTTTGA 58.869 45.455 20.50 0.00 41.17 2.69
631 634 3.526385 CCGAGTCGGCATATCATTTTG 57.474 47.619 20.50 0.00 41.17 2.44
644 647 1.335415 CCTATGAGCACATCCGAGTCG 60.335 57.143 5.29 5.29 37.87 4.18
645 648 1.000283 CCCTATGAGCACATCCGAGTC 60.000 57.143 0.00 0.00 37.87 3.36
646 649 1.043816 CCCTATGAGCACATCCGAGT 58.956 55.000 0.00 0.00 37.87 4.18
647 650 0.319728 CCCCTATGAGCACATCCGAG 59.680 60.000 0.00 0.00 37.87 4.63
648 651 0.398522 ACCCCTATGAGCACATCCGA 60.399 55.000 0.00 0.00 37.87 4.55
649 652 1.273606 CTACCCCTATGAGCACATCCG 59.726 57.143 0.00 0.00 37.87 4.18
650 653 1.625818 CCTACCCCTATGAGCACATCC 59.374 57.143 0.00 0.00 37.87 3.51
651 654 2.609747 TCCTACCCCTATGAGCACATC 58.390 52.381 0.00 0.00 37.87 3.06
652 655 2.795291 TCCTACCCCTATGAGCACAT 57.205 50.000 1.31 1.31 40.16 3.21
653 656 2.329267 CATCCTACCCCTATGAGCACA 58.671 52.381 0.00 0.00 0.00 4.57
654 657 2.037772 CACATCCTACCCCTATGAGCAC 59.962 54.545 0.00 0.00 0.00 4.40
655 658 2.329267 CACATCCTACCCCTATGAGCA 58.671 52.381 0.00 0.00 0.00 4.26
656 659 1.002544 GCACATCCTACCCCTATGAGC 59.997 57.143 0.00 0.00 31.75 4.26
657 660 1.273606 CGCACATCCTACCCCTATGAG 59.726 57.143 0.00 0.00 0.00 2.90
658 661 1.338107 CGCACATCCTACCCCTATGA 58.662 55.000 0.00 0.00 0.00 2.15
659 662 1.048601 ACGCACATCCTACCCCTATG 58.951 55.000 0.00 0.00 0.00 2.23
660 663 1.048601 CACGCACATCCTACCCCTAT 58.951 55.000 0.00 0.00 0.00 2.57
661 664 0.324923 ACACGCACATCCTACCCCTA 60.325 55.000 0.00 0.00 0.00 3.53
662 665 1.612442 ACACGCACATCCTACCCCT 60.612 57.895 0.00 0.00 0.00 4.79
663 666 1.449601 CACACGCACATCCTACCCC 60.450 63.158 0.00 0.00 0.00 4.95
664 667 0.533491 TACACACGCACATCCTACCC 59.467 55.000 0.00 0.00 0.00 3.69
665 668 1.636988 GTACACACGCACATCCTACC 58.363 55.000 0.00 0.00 0.00 3.18
666 669 1.265568 CGTACACACGCACATCCTAC 58.734 55.000 0.00 0.00 42.05 3.18
667 670 3.706287 CGTACACACGCACATCCTA 57.294 52.632 0.00 0.00 42.05 2.94
668 671 4.571250 CGTACACACGCACATCCT 57.429 55.556 0.00 0.00 42.05 3.24
671 674 9.450159 CATCTTTATGAACGTACACACGCACAT 62.450 40.741 11.91 11.91 42.81 3.21
672 675 8.238636 CATCTTTATGAACGTACACACGCACA 62.239 42.308 0.00 0.00 42.81 4.57
673 676 5.942269 CATCTTTATGAACGTACACACGCAC 60.942 44.000 0.00 0.00 42.81 5.34
674 677 4.090786 CATCTTTATGAACGTACACACGCA 59.909 41.667 0.00 0.00 42.81 5.24
675 678 4.325204 TCATCTTTATGAACGTACACACGC 59.675 41.667 0.00 0.00 43.38 5.34
676 679 5.571741 ACTCATCTTTATGAACGTACACACG 59.428 40.000 0.00 0.00 44.27 4.49
677 680 6.365247 ACACTCATCTTTATGAACGTACACAC 59.635 38.462 0.00 0.00 41.57 3.82
678 681 6.452242 ACACTCATCTTTATGAACGTACACA 58.548 36.000 0.00 0.00 41.57 3.72
679 682 6.946229 ACACTCATCTTTATGAACGTACAC 57.054 37.500 0.00 0.00 41.57 2.90
680 683 7.222031 GCATACACTCATCTTTATGAACGTACA 59.778 37.037 0.00 0.00 41.57 2.90
681 684 7.556433 GCATACACTCATCTTTATGAACGTAC 58.444 38.462 0.00 0.00 41.57 3.67
682 685 6.416750 CGCATACACTCATCTTTATGAACGTA 59.583 38.462 0.00 0.00 41.57 3.57
683 686 5.232202 CGCATACACTCATCTTTATGAACGT 59.768 40.000 0.00 0.00 41.57 3.99
684 687 5.660391 CGCATACACTCATCTTTATGAACG 58.340 41.667 0.00 0.00 41.57 3.95
685 688 5.435557 GCGCATACACTCATCTTTATGAAC 58.564 41.667 0.30 0.00 41.57 3.18
686 689 4.209080 CGCGCATACACTCATCTTTATGAA 59.791 41.667 8.75 0.00 41.57 2.57
687 690 3.735746 CGCGCATACACTCATCTTTATGA 59.264 43.478 8.75 0.00 39.87 2.15
688 691 3.490896 ACGCGCATACACTCATCTTTATG 59.509 43.478 5.73 0.00 0.00 1.90
689 692 3.717707 ACGCGCATACACTCATCTTTAT 58.282 40.909 5.73 0.00 0.00 1.40
690 693 3.159353 ACGCGCATACACTCATCTTTA 57.841 42.857 5.73 0.00 0.00 1.85
691 694 2.010145 ACGCGCATACACTCATCTTT 57.990 45.000 5.73 0.00 0.00 2.52
692 695 2.863401 TACGCGCATACACTCATCTT 57.137 45.000 5.73 0.00 0.00 2.40
693 696 2.554462 AGATACGCGCATACACTCATCT 59.446 45.455 5.73 0.00 0.00 2.90
694 697 2.935042 AGATACGCGCATACACTCATC 58.065 47.619 5.73 0.00 0.00 2.92
695 698 4.156008 TCATAGATACGCGCATACACTCAT 59.844 41.667 5.73 0.00 0.00 2.90
696 699 3.500680 TCATAGATACGCGCATACACTCA 59.499 43.478 5.73 0.00 0.00 3.41
697 700 4.079665 TCATAGATACGCGCATACACTC 57.920 45.455 5.73 0.00 0.00 3.51
698 701 3.670895 GCTCATAGATACGCGCATACACT 60.671 47.826 5.73 2.56 0.00 3.55
699 702 2.594654 GCTCATAGATACGCGCATACAC 59.405 50.000 5.73 0.00 0.00 2.90
700 703 2.727916 CGCTCATAGATACGCGCATACA 60.728 50.000 5.73 0.00 39.11 2.29
701 704 1.840741 CGCTCATAGATACGCGCATAC 59.159 52.381 5.73 0.00 39.11 2.39
702 705 2.174060 CGCTCATAGATACGCGCATA 57.826 50.000 5.73 0.00 39.11 3.14
703 706 3.021541 CGCTCATAGATACGCGCAT 57.978 52.632 5.73 0.00 39.11 4.73
704 707 4.533566 CGCTCATAGATACGCGCA 57.466 55.556 5.73 0.00 39.11 6.09
707 710 2.858344 ACACAAACGCTCATAGATACGC 59.142 45.455 0.00 0.00 0.00 4.42
708 711 4.205181 CAGACACAAACGCTCATAGATACG 59.795 45.833 0.00 0.00 0.00 3.06
709 712 5.103000 ACAGACACAAACGCTCATAGATAC 58.897 41.667 0.00 0.00 0.00 2.24
710 713 5.324784 ACAGACACAAACGCTCATAGATA 57.675 39.130 0.00 0.00 0.00 1.98
711 714 4.193826 ACAGACACAAACGCTCATAGAT 57.806 40.909 0.00 0.00 0.00 1.98
712 715 3.660501 ACAGACACAAACGCTCATAGA 57.339 42.857 0.00 0.00 0.00 1.98
713 716 4.486090 AGTACAGACACAAACGCTCATAG 58.514 43.478 0.00 0.00 0.00 2.23
714 717 4.514781 AGTACAGACACAAACGCTCATA 57.485 40.909 0.00 0.00 0.00 2.15
715 718 3.386768 AGTACAGACACAAACGCTCAT 57.613 42.857 0.00 0.00 0.00 2.90
716 719 2.882927 AGTACAGACACAAACGCTCA 57.117 45.000 0.00 0.00 0.00 4.26
717 720 4.235360 ACATAGTACAGACACAAACGCTC 58.765 43.478 0.00 0.00 0.00 5.03
718 721 4.252971 ACATAGTACAGACACAAACGCT 57.747 40.909 0.00 0.00 0.00 5.07
719 722 4.985044 AACATAGTACAGACACAAACGC 57.015 40.909 0.00 0.00 0.00 4.84
743 746 5.001232 AGTAGGATGTGCGTGTGTATTTTT 58.999 37.500 0.00 0.00 0.00 1.94
744 747 4.575885 AGTAGGATGTGCGTGTGTATTTT 58.424 39.130 0.00 0.00 0.00 1.82
745 748 4.202245 AGTAGGATGTGCGTGTGTATTT 57.798 40.909 0.00 0.00 0.00 1.40
746 749 3.887621 AGTAGGATGTGCGTGTGTATT 57.112 42.857 0.00 0.00 0.00 1.89
747 750 3.887621 AAGTAGGATGTGCGTGTGTAT 57.112 42.857 0.00 0.00 0.00 2.29
748 751 3.671008 AAAGTAGGATGTGCGTGTGTA 57.329 42.857 0.00 0.00 0.00 2.90
749 752 2.543777 AAAGTAGGATGTGCGTGTGT 57.456 45.000 0.00 0.00 0.00 3.72
750 753 4.180817 TCATAAAGTAGGATGTGCGTGTG 58.819 43.478 0.00 0.00 0.00 3.82
751 754 4.433615 CTCATAAAGTAGGATGTGCGTGT 58.566 43.478 0.00 0.00 0.00 4.49
752 755 3.246226 GCTCATAAAGTAGGATGTGCGTG 59.754 47.826 0.00 0.00 34.14 5.34
753 756 3.118775 TGCTCATAAAGTAGGATGTGCGT 60.119 43.478 0.00 0.00 42.62 5.24
754 757 3.457234 TGCTCATAAAGTAGGATGTGCG 58.543 45.455 0.00 0.00 42.62 5.34
755 758 5.303971 AGATGCTCATAAAGTAGGATGTGC 58.696 41.667 0.00 0.00 40.99 4.57
756 759 7.890515 TCTAGATGCTCATAAAGTAGGATGTG 58.109 38.462 0.00 0.00 0.00 3.21
757 760 8.484214 TTCTAGATGCTCATAAAGTAGGATGT 57.516 34.615 0.00 0.00 0.00 3.06
758 761 9.941325 AATTCTAGATGCTCATAAAGTAGGATG 57.059 33.333 0.00 0.00 0.00 3.51
759 762 9.941325 CAATTCTAGATGCTCATAAAGTAGGAT 57.059 33.333 0.00 0.00 0.00 3.24
760 763 8.370940 CCAATTCTAGATGCTCATAAAGTAGGA 58.629 37.037 0.00 0.00 0.00 2.94
761 764 7.118971 GCCAATTCTAGATGCTCATAAAGTAGG 59.881 40.741 0.00 0.00 0.00 3.18
762 765 7.118971 GGCCAATTCTAGATGCTCATAAAGTAG 59.881 40.741 0.00 0.00 0.00 2.57
763 766 6.936900 GGCCAATTCTAGATGCTCATAAAGTA 59.063 38.462 0.00 0.00 0.00 2.24
764 767 5.767168 GGCCAATTCTAGATGCTCATAAAGT 59.233 40.000 0.00 0.00 0.00 2.66
765 768 5.106791 CGGCCAATTCTAGATGCTCATAAAG 60.107 44.000 2.24 0.00 0.00 1.85
766 769 4.756642 CGGCCAATTCTAGATGCTCATAAA 59.243 41.667 2.24 0.00 0.00 1.40
767 770 4.318332 CGGCCAATTCTAGATGCTCATAA 58.682 43.478 2.24 0.00 0.00 1.90
768 771 3.306989 CCGGCCAATTCTAGATGCTCATA 60.307 47.826 2.24 0.00 0.00 2.15
769 772 2.551721 CCGGCCAATTCTAGATGCTCAT 60.552 50.000 2.24 0.00 0.00 2.90
770 773 1.202687 CCGGCCAATTCTAGATGCTCA 60.203 52.381 2.24 0.00 0.00 4.26
771 774 1.517242 CCGGCCAATTCTAGATGCTC 58.483 55.000 2.24 0.00 0.00 4.26
772 775 0.536006 GCCGGCCAATTCTAGATGCT 60.536 55.000 18.11 0.00 0.00 3.79
773 776 0.819259 TGCCGGCCAATTCTAGATGC 60.819 55.000 26.77 0.00 0.00 3.91
774 777 1.538512 CATGCCGGCCAATTCTAGATG 59.461 52.381 26.77 13.67 0.00 2.90
775 778 1.143684 ACATGCCGGCCAATTCTAGAT 59.856 47.619 26.77 3.74 0.00 1.98
776 779 0.546122 ACATGCCGGCCAATTCTAGA 59.454 50.000 26.77 0.73 0.00 2.43
777 780 0.947244 GACATGCCGGCCAATTCTAG 59.053 55.000 26.77 6.98 0.00 2.43
778 781 0.813610 CGACATGCCGGCCAATTCTA 60.814 55.000 26.77 2.60 0.00 2.10
779 782 2.114670 CGACATGCCGGCCAATTCT 61.115 57.895 26.77 0.00 0.00 2.40
780 783 2.408835 CGACATGCCGGCCAATTC 59.591 61.111 26.77 13.95 0.00 2.17
781 784 3.825611 GCGACATGCCGGCCAATT 61.826 61.111 26.77 5.10 37.76 2.32
790 793 1.063174 GTCAATCTCAAGGCGACATGC 59.937 52.381 0.00 0.00 45.38 4.06
791 794 1.325640 CGTCAATCTCAAGGCGACATG 59.674 52.381 0.00 0.00 0.00 3.21
792 795 1.204704 TCGTCAATCTCAAGGCGACAT 59.795 47.619 0.00 0.00 0.00 3.06
793 796 0.601057 TCGTCAATCTCAAGGCGACA 59.399 50.000 0.00 0.00 0.00 4.35
794 797 1.272781 CTCGTCAATCTCAAGGCGAC 58.727 55.000 0.00 0.00 0.00 5.19
795 798 0.173481 CCTCGTCAATCTCAAGGCGA 59.827 55.000 0.00 0.00 0.00 5.54
796 799 0.108615 ACCTCGTCAATCTCAAGGCG 60.109 55.000 0.00 0.00 0.00 5.52
797 800 1.066858 TGACCTCGTCAATCTCAAGGC 60.067 52.381 0.00 0.00 39.78 4.35
798 801 3.118992 TGATGACCTCGTCAATCTCAAGG 60.119 47.826 0.00 0.00 45.96 3.61
799 802 4.111198 CTGATGACCTCGTCAATCTCAAG 58.889 47.826 0.00 0.00 45.96 3.02
800 803 3.763897 TCTGATGACCTCGTCAATCTCAA 59.236 43.478 0.00 0.00 45.96 3.02
801 804 3.356290 TCTGATGACCTCGTCAATCTCA 58.644 45.455 0.00 0.00 45.96 3.27
802 805 4.109050 GTTCTGATGACCTCGTCAATCTC 58.891 47.826 0.00 0.00 45.96 2.75
803 806 3.428180 CGTTCTGATGACCTCGTCAATCT 60.428 47.826 0.00 0.00 45.96 2.40
804 807 2.854777 CGTTCTGATGACCTCGTCAATC 59.145 50.000 0.00 0.00 45.96 2.67
805 808 2.231478 ACGTTCTGATGACCTCGTCAAT 59.769 45.455 0.00 0.00 45.96 2.57
806 809 1.611977 ACGTTCTGATGACCTCGTCAA 59.388 47.619 0.00 0.00 45.96 3.18
807 810 1.244816 ACGTTCTGATGACCTCGTCA 58.755 50.000 0.00 0.00 46.90 4.35
808 811 3.064958 TGATACGTTCTGATGACCTCGTC 59.935 47.826 0.00 0.00 33.70 4.20
809 812 3.014623 TGATACGTTCTGATGACCTCGT 58.985 45.455 0.00 0.00 35.73 4.18
810 813 3.692791 TGATACGTTCTGATGACCTCG 57.307 47.619 0.00 0.00 0.00 4.63
811 814 6.320494 ACTATGATACGTTCTGATGACCTC 57.680 41.667 0.00 0.00 0.00 3.85
812 815 5.049336 CGACTATGATACGTTCTGATGACCT 60.049 44.000 0.00 0.00 0.00 3.85
813 816 5.147865 CGACTATGATACGTTCTGATGACC 58.852 45.833 0.00 0.00 0.00 4.02
814 817 5.749620 ACGACTATGATACGTTCTGATGAC 58.250 41.667 0.00 0.00 36.91 3.06
815 818 5.333111 CGACGACTATGATACGTTCTGATGA 60.333 44.000 0.00 0.00 40.29 2.92
816 819 4.841306 CGACGACTATGATACGTTCTGATG 59.159 45.833 0.00 0.00 40.29 3.07
817 820 4.083961 CCGACGACTATGATACGTTCTGAT 60.084 45.833 0.00 0.00 40.29 2.90
818 821 3.246936 CCGACGACTATGATACGTTCTGA 59.753 47.826 0.00 0.00 40.29 3.27
819 822 3.246936 TCCGACGACTATGATACGTTCTG 59.753 47.826 0.00 0.00 40.29 3.02
820 823 3.461061 TCCGACGACTATGATACGTTCT 58.539 45.455 0.00 0.00 40.29 3.01
821 824 3.867055 TCCGACGACTATGATACGTTC 57.133 47.619 0.00 0.00 40.29 3.95
822 825 4.621068 TTTCCGACGACTATGATACGTT 57.379 40.909 0.00 0.00 40.29 3.99
823 826 4.534168 CATTTCCGACGACTATGATACGT 58.466 43.478 0.00 0.00 42.84 3.57
824 827 3.912563 CCATTTCCGACGACTATGATACG 59.087 47.826 0.00 0.00 0.00 3.06
825 828 4.022589 TCCCATTTCCGACGACTATGATAC 60.023 45.833 0.00 0.00 0.00 2.24
826 829 4.022589 GTCCCATTTCCGACGACTATGATA 60.023 45.833 0.00 0.00 0.00 2.15
827 830 2.963101 TCCCATTTCCGACGACTATGAT 59.037 45.455 0.00 0.00 0.00 2.45
828 831 2.100252 GTCCCATTTCCGACGACTATGA 59.900 50.000 0.00 0.00 0.00 2.15
829 832 2.159156 TGTCCCATTTCCGACGACTATG 60.159 50.000 0.00 0.00 0.00 2.23
830 833 2.104967 TGTCCCATTTCCGACGACTAT 58.895 47.619 0.00 0.00 0.00 2.12
831 834 1.548081 TGTCCCATTTCCGACGACTA 58.452 50.000 0.00 0.00 0.00 2.59
832 835 0.682852 TTGTCCCATTTCCGACGACT 59.317 50.000 0.00 0.00 0.00 4.18
833 836 1.196127 GTTTGTCCCATTTCCGACGAC 59.804 52.381 0.00 0.00 0.00 4.34
834 837 1.202663 TGTTTGTCCCATTTCCGACGA 60.203 47.619 0.00 0.00 0.00 4.20
835 838 1.069500 GTGTTTGTCCCATTTCCGACG 60.069 52.381 0.00 0.00 0.00 5.12
836 839 1.268625 GGTGTTTGTCCCATTTCCGAC 59.731 52.381 0.00 0.00 0.00 4.79
837 840 1.611519 GGTGTTTGTCCCATTTCCGA 58.388 50.000 0.00 0.00 0.00 4.55
838 841 0.239879 CGGTGTTTGTCCCATTTCCG 59.760 55.000 0.00 0.00 0.00 4.30
839 842 1.324383 ACGGTGTTTGTCCCATTTCC 58.676 50.000 0.00 0.00 0.00 3.13
840 843 4.571372 TTTACGGTGTTTGTCCCATTTC 57.429 40.909 0.00 0.00 0.00 2.17
841 844 6.651975 TTATTTACGGTGTTTGTCCCATTT 57.348 33.333 0.00 0.00 0.00 2.32
842 845 6.844097 ATTATTTACGGTGTTTGTCCCATT 57.156 33.333 0.00 0.00 0.00 3.16
843 846 6.844097 AATTATTTACGGTGTTTGTCCCAT 57.156 33.333 0.00 0.00 0.00 4.00
844 847 6.040616 ACAAATTATTTACGGTGTTTGTCCCA 59.959 34.615 0.00 0.00 35.56 4.37
2044 6198 4.602006 GGAAGAAGCTTGTTCAACTCAAC 58.398 43.478 30.61 12.97 32.58 3.18
2109 6263 2.681848 CACATTCTCATCTCCAGCAACC 59.318 50.000 0.00 0.00 0.00 3.77
2322 6482 3.771577 AACAGAAGACACGAAAGGGAT 57.228 42.857 0.00 0.00 38.45 3.85
2456 6617 3.865164 CACATACTGCAATAGACGAGCAA 59.135 43.478 0.00 0.00 37.89 3.91
2591 6755 4.433186 TTCAAGTATGCCAATTTGGTCG 57.567 40.909 16.62 0.00 40.46 4.79
2673 6837 3.678072 TGATAAAAGAACAAGAGCCGTCG 59.322 43.478 0.00 0.00 0.00 5.12
2952 7119 9.859692 GAAAAATAATACAGTACTCCGTTATGC 57.140 33.333 0.00 0.00 0.00 3.14
2994 7161 6.969366 TGGTATTGACAGAAACATCAAACAG 58.031 36.000 0.00 0.00 38.29 3.16
3067 7234 4.127918 TCTCTCCCAGAAAGAAGGTACA 57.872 45.455 0.00 0.00 0.00 2.90
3070 7237 3.580895 GACTTCTCTCCCAGAAAGAAGGT 59.419 47.826 11.33 0.00 46.62 3.50
3094 7261 2.440409 AGTTTAGCCACAATCCAGCAG 58.560 47.619 0.00 0.00 0.00 4.24
3095 7262 2.584835 AGTTTAGCCACAATCCAGCA 57.415 45.000 0.00 0.00 0.00 4.41
3104 7271 4.159693 CCCTCCCAATTTAAGTTTAGCCAC 59.840 45.833 0.00 0.00 0.00 5.01
3129 7296 0.250234 CTGTTCCCTCTTCATCGCCA 59.750 55.000 0.00 0.00 0.00 5.69
3131 7298 1.338200 ACACTGTTCCCTCTTCATCGC 60.338 52.381 0.00 0.00 0.00 4.58
3132 7299 2.751166 ACACTGTTCCCTCTTCATCG 57.249 50.000 0.00 0.00 0.00 3.84
3151 7369 5.240121 CCGAACAGGCCTAAAGTAAACTTA 58.760 41.667 3.98 0.00 34.61 2.24
3166 7384 3.590824 GGTGGATTGCCGAACAGG 58.409 61.111 0.00 0.00 44.97 4.00
3173 7391 4.467084 TCGGAGCGGTGGATTGCC 62.467 66.667 0.00 0.00 0.00 4.52
3174 7392 2.852495 TTCTCGGAGCGGTGGATTGC 62.852 60.000 0.00 0.00 0.00 3.56
3175 7393 0.391130 TTTCTCGGAGCGGTGGATTG 60.391 55.000 0.00 0.00 0.00 2.67
3176 7394 0.541863 ATTTCTCGGAGCGGTGGATT 59.458 50.000 0.00 0.00 0.00 3.01
3177 7395 1.068741 GTATTTCTCGGAGCGGTGGAT 59.931 52.381 0.00 0.00 0.00 3.41
3179 7397 0.174845 TGTATTTCTCGGAGCGGTGG 59.825 55.000 0.00 0.00 0.00 4.61
3180 7398 1.927174 CTTGTATTTCTCGGAGCGGTG 59.073 52.381 0.00 0.00 0.00 4.94
3182 7400 2.579207 TCTTGTATTTCTCGGAGCGG 57.421 50.000 0.00 0.00 0.00 5.52
3183 7401 4.363999 AGATTCTTGTATTTCTCGGAGCG 58.636 43.478 0.00 0.00 0.00 5.03
3184 7402 5.399892 CGTAGATTCTTGTATTTCTCGGAGC 59.600 44.000 0.00 0.00 0.00 4.70
3185 7403 5.915758 CCGTAGATTCTTGTATTTCTCGGAG 59.084 44.000 0.00 0.00 34.10 4.63
3187 7405 5.828747 TCCGTAGATTCTTGTATTTCTCGG 58.171 41.667 0.00 0.00 33.81 4.63
3189 7407 6.273825 TGCTCCGTAGATTCTTGTATTTCTC 58.726 40.000 0.00 0.00 0.00 2.87
3190 7408 6.222038 TGCTCCGTAGATTCTTGTATTTCT 57.778 37.500 0.00 0.00 0.00 2.52
3191 7409 6.926272 AGATGCTCCGTAGATTCTTGTATTTC 59.074 38.462 0.00 0.00 0.00 2.17
3192 7410 6.821388 AGATGCTCCGTAGATTCTTGTATTT 58.179 36.000 0.00 0.00 0.00 1.40
3194 7412 5.772672 AGAGATGCTCCGTAGATTCTTGTAT 59.227 40.000 0.00 0.00 0.00 2.29
3195 7413 5.133941 AGAGATGCTCCGTAGATTCTTGTA 58.866 41.667 0.00 0.00 0.00 2.41
3196 7414 3.957497 AGAGATGCTCCGTAGATTCTTGT 59.043 43.478 0.00 0.00 0.00 3.16
3197 7415 4.582701 AGAGATGCTCCGTAGATTCTTG 57.417 45.455 0.00 0.00 0.00 3.02
3199 7417 4.892934 AGAAAGAGATGCTCCGTAGATTCT 59.107 41.667 0.00 0.00 0.00 2.40
3200 7418 5.195001 AGAAAGAGATGCTCCGTAGATTC 57.805 43.478 0.00 0.00 0.00 2.52
3201 7419 4.038642 GGAGAAAGAGATGCTCCGTAGATT 59.961 45.833 0.00 0.00 38.88 2.40
3202 7420 3.572255 GGAGAAAGAGATGCTCCGTAGAT 59.428 47.826 0.00 0.00 38.88 1.98
3208 7426 2.158971 GGAGTGGAGAAAGAGATGCTCC 60.159 54.545 0.00 0.00 46.60 4.70
3209 7427 2.481104 CGGAGTGGAGAAAGAGATGCTC 60.481 54.545 0.00 0.00 0.00 4.26
3210 7428 1.480137 CGGAGTGGAGAAAGAGATGCT 59.520 52.381 0.00 0.00 0.00 3.79
3211 7429 1.205893 ACGGAGTGGAGAAAGAGATGC 59.794 52.381 0.00 0.00 42.51 3.91
3212 7430 4.927978 ATACGGAGTGGAGAAAGAGATG 57.072 45.455 0.00 0.00 45.73 2.90
3213 7431 5.941555 AAATACGGAGTGGAGAAAGAGAT 57.058 39.130 0.00 0.00 45.73 2.75
3214 7432 5.245301 TGAAAATACGGAGTGGAGAAAGAGA 59.755 40.000 0.00 0.00 45.73 3.10
3215 7433 5.479306 TGAAAATACGGAGTGGAGAAAGAG 58.521 41.667 0.00 0.00 45.73 2.85
3216 7434 5.477607 TGAAAATACGGAGTGGAGAAAGA 57.522 39.130 0.00 0.00 45.73 2.52
3217 7435 5.701290 AGTTGAAAATACGGAGTGGAGAAAG 59.299 40.000 0.00 0.00 45.73 2.62
3220 7438 4.282449 TCAGTTGAAAATACGGAGTGGAGA 59.718 41.667 0.00 0.00 45.73 3.71
3222 7440 4.610605 TCAGTTGAAAATACGGAGTGGA 57.389 40.909 0.00 0.00 45.73 4.02
3223 7441 4.378459 GCTTCAGTTGAAAATACGGAGTGG 60.378 45.833 0.00 0.00 35.61 4.00
3224 7442 4.452455 AGCTTCAGTTGAAAATACGGAGTG 59.548 41.667 0.00 0.00 35.61 3.51
3225 7443 4.642429 AGCTTCAGTTGAAAATACGGAGT 58.358 39.130 0.00 0.00 37.92 3.85
3226 7444 4.201628 CGAGCTTCAGTTGAAAATACGGAG 60.202 45.833 0.00 0.00 33.07 4.63
3227 7445 3.678072 CGAGCTTCAGTTGAAAATACGGA 59.322 43.478 0.00 0.00 33.07 4.69
3228 7446 3.181520 CCGAGCTTCAGTTGAAAATACGG 60.182 47.826 11.68 11.68 33.07 4.02
3229 7447 3.432252 ACCGAGCTTCAGTTGAAAATACG 59.568 43.478 0.00 0.00 33.07 3.06
3230 7448 4.142881 GGACCGAGCTTCAGTTGAAAATAC 60.143 45.833 0.00 0.00 33.07 1.89
3231 7449 4.000988 GGACCGAGCTTCAGTTGAAAATA 58.999 43.478 0.00 0.00 33.07 1.40
3232 7450 2.814336 GGACCGAGCTTCAGTTGAAAAT 59.186 45.455 0.00 0.00 33.07 1.82
3233 7451 2.218603 GGACCGAGCTTCAGTTGAAAA 58.781 47.619 0.00 0.00 33.07 2.29
3234 7452 1.872237 CGGACCGAGCTTCAGTTGAAA 60.872 52.381 8.64 0.00 33.07 2.69
3235 7453 0.319555 CGGACCGAGCTTCAGTTGAA 60.320 55.000 8.64 0.00 0.00 2.69
3236 7454 1.289066 CGGACCGAGCTTCAGTTGA 59.711 57.895 8.64 0.00 0.00 3.18
3237 7455 2.383527 GCGGACCGAGCTTCAGTTG 61.384 63.158 20.50 0.00 0.00 3.16
3238 7456 2.048127 GCGGACCGAGCTTCAGTT 60.048 61.111 20.50 0.00 0.00 3.16
3239 7457 2.992114 AGCGGACCGAGCTTCAGT 60.992 61.111 20.50 0.00 43.24 3.41
3240 7458 2.202676 GAGCGGACCGAGCTTCAG 60.203 66.667 20.50 0.00 46.13 3.02
3241 7459 4.116328 CGAGCGGACCGAGCTTCA 62.116 66.667 20.50 0.00 46.13 3.02
3242 7460 4.856607 CCGAGCGGACCGAGCTTC 62.857 72.222 20.50 8.00 46.13 3.86
3261 7479 4.838486 CTCCGCACGACTCCGCTC 62.838 72.222 0.00 0.00 39.95 5.03
3276 7494 3.812019 TTCGGAGTCTCGCCGCTC 61.812 66.667 7.02 0.00 45.89 5.03
3277 7495 4.117661 GTTCGGAGTCTCGCCGCT 62.118 66.667 7.02 0.00 45.89 5.52
3278 7496 4.415332 TGTTCGGAGTCTCGCCGC 62.415 66.667 7.02 0.00 45.89 6.53
3280 7498 2.182030 CCTGTTCGGAGTCTCGCC 59.818 66.667 0.00 0.00 33.16 5.54
3281 7499 2.507324 GCCTGTTCGGAGTCTCGC 60.507 66.667 0.00 0.00 33.16 5.03
3282 7500 1.878656 AAGGCCTGTTCGGAGTCTCG 61.879 60.000 5.69 0.00 33.16 4.04
3283 7501 0.321996 AAAGGCCTGTTCGGAGTCTC 59.678 55.000 5.69 0.00 33.16 3.36
3284 7502 0.765510 AAAAGGCCTGTTCGGAGTCT 59.234 50.000 5.69 0.00 33.16 3.24
3285 7503 2.467566 TAAAAGGCCTGTTCGGAGTC 57.532 50.000 12.79 0.00 33.16 3.36
3286 7504 2.572104 AGATAAAAGGCCTGTTCGGAGT 59.428 45.455 12.79 0.00 33.16 3.85
3287 7505 3.268023 AGATAAAAGGCCTGTTCGGAG 57.732 47.619 12.79 0.00 33.16 4.63
3288 7506 4.028131 TCTAGATAAAAGGCCTGTTCGGA 58.972 43.478 12.79 0.00 33.16 4.55
3289 7507 4.120589 GTCTAGATAAAAGGCCTGTTCGG 58.879 47.826 12.79 0.00 0.00 4.30
3290 7508 4.755411 TGTCTAGATAAAAGGCCTGTTCG 58.245 43.478 12.79 0.00 0.00 3.95
3291 7509 7.631717 AAATGTCTAGATAAAAGGCCTGTTC 57.368 36.000 12.79 0.00 0.00 3.18
3292 7510 7.283354 GCTAAATGTCTAGATAAAAGGCCTGTT 59.717 37.037 14.09 14.09 0.00 3.16
3293 7511 6.768381 GCTAAATGTCTAGATAAAAGGCCTGT 59.232 38.462 5.69 0.00 0.00 4.00
3294 7512 6.767902 TGCTAAATGTCTAGATAAAAGGCCTG 59.232 38.462 5.69 0.00 0.00 4.85
3295 7513 6.900194 TGCTAAATGTCTAGATAAAAGGCCT 58.100 36.000 0.00 0.00 0.00 5.19
3296 7514 6.992715 TCTGCTAAATGTCTAGATAAAAGGCC 59.007 38.462 0.00 0.00 0.00 5.19
3297 7515 7.041712 GGTCTGCTAAATGTCTAGATAAAAGGC 60.042 40.741 0.00 0.00 0.00 4.35
3298 7516 7.987458 TGGTCTGCTAAATGTCTAGATAAAAGG 59.013 37.037 0.00 0.00 0.00 3.11
3299 7517 8.948631 TGGTCTGCTAAATGTCTAGATAAAAG 57.051 34.615 0.00 0.00 0.00 2.27
3300 7518 8.540388 ACTGGTCTGCTAAATGTCTAGATAAAA 58.460 33.333 0.00 0.00 0.00 1.52
3348 7566 7.411804 GGCGACCAAAATTTTCAATAACAGATG 60.412 37.037 0.00 0.00 0.00 2.90
3349 7567 6.589907 GGCGACCAAAATTTTCAATAACAGAT 59.410 34.615 0.00 0.00 0.00 2.90
3371 7589 1.068474 CTTCAGTAAACACTCCGGCG 58.932 55.000 0.00 0.00 0.00 6.46
3392 7610 1.177256 GCATAATGAGGCAGCCCCAG 61.177 60.000 8.22 0.00 35.39 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.