AutoCloner

Multiple sequence alignment - TraesCS1D01G207800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G207800	chr1D	100.000	3194	0	0	1	3194	293935444	293932251	0.000000e+00	5899
1	TraesCS1D01G207800	chr1D	86.393	1536	152	34	942	2443	293950077	293948565	0.000000e+00	1626
2	TraesCS1D01G207800	chr1D	76.606	654	136	16	1021	1664	293915280	293914634	8.480000e-91	344
3	TraesCS1D01G207800	chr1B	95.576	1537	51	5	930	2451	395277605	395276071	0.000000e+00	2446
4	TraesCS1D01G207800	chr1B	85.602	1528	161	39	945	2450	395310780	395309290	0.000000e+00	1548
5	TraesCS1D01G207800	chr1B	91.722	749	59	1	2446	3194	395276022	395275277	0.000000e+00	1037
6	TraesCS1D01G207800	chr1B	95.652	69	2	1	845	912	395278676	395278608	3.370000e-20	110
7	TraesCS1D01G207800	chr1A	96.570	1108	36	2	1345	2451	366297108	366296002	0.000000e+00	1834
8	TraesCS1D01G207800	chr1A	88.383	878	79	14	954	1823	366368159	366367297	0.000000e+00	1035
9	TraesCS1D01G207800	chr1A	90.311	547	51	1	2650	3194	366294376	366293830	0.000000e+00	715
10	TraesCS1D01G207800	chr1A	96.262	428	12	3	927	1353	366299850	366299426	0.000000e+00	699
11	TraesCS1D01G207800	chr1A	82.222	495	61	18	1815	2295	366367192	366366711	4.960000e-108	401
12	TraesCS1D01G207800	chr1A	92.237	219	13	2	2441	2658	366295959	366295744	1.110000e-79	307
13	TraesCS1D01G207800	chr1A	95.714	70	1	2	844	912	366315244	366315176	9.370000e-21	111
14	TraesCS1D01G207800	chr3D	91.078	863	58	7	2	853	351412745	351411891	0.000000e+00	1149
15	TraesCS1D01G207800	chr3A	89.639	859	70	10	1	850	135577063	135577911	0.000000e+00	1075
16	TraesCS1D01G207800	chr5D	88.031	777	81	6	1	768	324749783	324749010	0.000000e+00	909
17	TraesCS1D01G207800	chr5D	87.564	780	81	8	1	770	558924830	558924057	0.000000e+00	889
18	TraesCS1D01G207800	chr5D	83.607	305	48	2	1068	1371	506949937	506949634	5.210000e-73	285
19	TraesCS1D01G207800	chr5D	84.452	283	44	0	1065	1347	507266533	507266251	2.430000e-71	279
20	TraesCS1D01G207800	chr4D	88.172	651	71	6	1	648	19066736	19066089	0.000000e+00	771
21	TraesCS1D01G207800	chr2D	87.519	649	78	3	1	648	304974157	304973511	0.000000e+00	747
22	TraesCS1D01G207800	chr2D	85.559	644	85	8	1	638	601080472	601081113	0.000000e+00	667
23	TraesCS1D01G207800	chr6D	86.462	650	83	5	1	648	42099682	42100328	0.000000e+00	708
24	TraesCS1D01G207800	chr7B	85.294	646	88	7	1	642	742025769	742026411	0.000000e+00	660
25	TraesCS1D01G207800	chr5A	82.895	304	50	2	1069	1371	634488276	634487974	4.060000e-69	272

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G207800	chr1D	293932251	293935444	3193	True	5899.000000	5899	100.000000	1	3194	1	chr1D.!!$R2	3193
1	TraesCS1D01G207800	chr1D	293948565	293950077	1512	True	1626.000000	1626	86.393000	942	2443	1	chr1D.!!$R3	1501
2	TraesCS1D01G207800	chr1D	293914634	293915280	646	True	344.000000	344	76.606000	1021	1664	1	chr1D.!!$R1	643
3	TraesCS1D01G207800	chr1B	395309290	395310780	1490	True	1548.000000	1548	85.602000	945	2450	1	chr1B.!!$R1	1505
4	TraesCS1D01G207800	chr1B	395275277	395278676	3399	True	1197.666667	2446	94.316667	845	3194	3	chr1B.!!$R2	2349
5	TraesCS1D01G207800	chr1A	366293830	366299850	6020	True	888.750000	1834	93.845000	927	3194	4	chr1A.!!$R2	2267
6	TraesCS1D01G207800	chr1A	366366711	366368159	1448	True	718.000000	1035	85.302500	954	2295	2	chr1A.!!$R3	1341
7	TraesCS1D01G207800	chr3D	351411891	351412745	854	True	1149.000000	1149	91.078000	2	853	1	chr3D.!!$R1	851
8	TraesCS1D01G207800	chr3A	135577063	135577911	848	False	1075.000000	1075	89.639000	1	850	1	chr3A.!!$F1	849
9	TraesCS1D01G207800	chr5D	324749010	324749783	773	True	909.000000	909	88.031000	1	768	1	chr5D.!!$R1	767
10	TraesCS1D01G207800	chr5D	558924057	558924830	773	True	889.000000	889	87.564000	1	770	1	chr5D.!!$R4	769
11	TraesCS1D01G207800	chr4D	19066089	19066736	647	True	771.000000	771	88.172000	1	648	1	chr4D.!!$R1	647
12	TraesCS1D01G207800	chr2D	304973511	304974157	646	True	747.000000	747	87.519000	1	648	1	chr2D.!!$R1	647
13	TraesCS1D01G207800	chr2D	601080472	601081113	641	False	667.000000	667	85.559000	1	638	1	chr2D.!!$F1	637
14	TraesCS1D01G207800	chr6D	42099682	42100328	646	False	708.000000	708	86.462000	1	648	1	chr6D.!!$F1	647
15	TraesCS1D01G207800	chr7B	742025769	742026411	642	False	660.000000	660	85.294000	1	642	1	chr7B.!!$F1	641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
159	161	0.033208	GGATGTTGAGGGGCCATGAA	60.033	55.000	4.39	0.0	0.00	2.57	F
1809	5169	1.227943	GCCGCTGCATATGGAAGGA	60.228	57.895	18.45	0.0	37.47	3.36	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1853	5326	1.539827	GCTTAACCGCACAGACCAAAT	59.460	47.619	0.00	0.0	0.00	2.32	R
2721	7648	1.532604	GGCGCTTAAACTGGCCCTTT	61.533	55.000	7.64	0.0	39.67	3.11	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
145	147	4.916041	TGTTGAAGAGAGGAATGGATGT	57.084	40.909	0.00	0.00	0.00	3.06
159	161	0.033208	GGATGTTGAGGGGCCATGAA	60.033	55.000	4.39	0.00	0.00	2.57
168	170	2.679996	GGCCATGAAAACGCCCCT	60.680	61.111	0.00	0.00	36.63	4.79
173	175	1.256812	CATGAAAACGCCCCTTCCTT	58.743	50.000	0.00	0.00	0.00	3.36
258	260	9.488762	TTGGATGGTTAAAAGTATCTAGAGAGA	57.511	33.333	0.00	0.00	35.71	3.10
286	292	6.232581	TCTTGACATTTTTGGGTGATTTGT	57.767	33.333	0.00	0.00	0.00	2.83
317	323	4.081862	CGTTGGAGTTGTCCTTATGGTAGA	60.082	45.833	0.00	0.00	44.30	2.59
358	365	7.127339	ACCTACTCAATTGGTAGTCATGGTAAT	59.873	37.037	22.11	3.48	34.27	1.89
540	552	2.424246	GAGAAACCCAACGGTGAAAACA	59.576	45.455	0.00	0.00	43.71	2.83
613	630	5.523588	TGACCCCTAATAAATGCAAATGGA	58.476	37.500	0.00	0.00	0.00	3.41
615	632	6.441924	TGACCCCTAATAAATGCAAATGGAAA	59.558	34.615	0.00	0.00	0.00	3.13
624	641	2.997980	TGCAAATGGAAAGGATAGCGA	58.002	42.857	0.00	0.00	0.00	4.93
627	644	3.627577	GCAAATGGAAAGGATAGCGAGAA	59.372	43.478	0.00	0.00	0.00	2.87
651	669	4.938832	CACATGGGACCTGACGTTTTTATA	59.061	41.667	0.00	0.00	0.00	0.98
655	673	6.297080	TGGGACCTGACGTTTTTATATGTA	57.703	37.500	0.00	0.00	0.00	2.29
659	677	7.037438	GGACCTGACGTTTTTATATGTAGACA	58.963	38.462	0.00	0.00	0.00	3.41
703	729	5.816449	TTTTTCTATTCGCATGCATCAGA	57.184	34.783	19.57	11.01	0.00	3.27
760	786	1.746787	TCGAGAGCTATGCGTTTGGTA	59.253	47.619	0.00	0.00	0.00	3.25
776	802	3.581265	TGGTACTTCCGTTTCCCTTTT	57.419	42.857	0.00	0.00	39.52	2.27
782	808	7.069702	TGGTACTTCCGTTTCCCTTTTTATTTT	59.930	33.333	0.00	0.00	39.52	1.82
784	810	6.210796	ACTTCCGTTTCCCTTTTTATTTTCG	58.789	36.000	0.00	0.00	0.00	3.46
806	832	2.101575	GCGCTCACATCGACGGTA	59.898	61.111	0.00	0.00	0.00	4.02
815	841	4.790962	TCGACGGTAGGGCGCTCT	62.791	66.667	17.29	17.29	0.00	4.09
816	842	3.823330	CGACGGTAGGGCGCTCTT	61.823	66.667	18.76	0.00	0.00	2.85
817	843	2.577593	GACGGTAGGGCGCTCTTT	59.422	61.111	18.76	0.00	0.00	2.52
818	844	1.810030	GACGGTAGGGCGCTCTTTG	60.810	63.158	18.76	8.53	0.00	2.77
819	845	3.195698	CGGTAGGGCGCTCTTTGC	61.196	66.667	18.76	6.35	38.57	3.68
820	846	2.269241	GGTAGGGCGCTCTTTGCT	59.731	61.111	18.76	0.00	40.11	3.91
821	847	1.815840	GGTAGGGCGCTCTTTGCTC	60.816	63.158	18.76	1.01	40.11	4.26
843	869	2.978824	GCCCACTAGCTTCGTCCA	59.021	61.111	0.00	0.00	0.00	4.02
890	917	1.829222	TCTTATCCCCGAACCAGTCAC	59.171	52.381	0.00	0.00	0.00	3.67
904	931	2.158957	CCAGTCACGCCTATGTGGTTAT	60.159	50.000	0.00	0.00	40.31	1.89
920	1905	3.205507	TGGTTATGGGCTTAATGGGCTTA	59.794	43.478	0.00	0.00	0.00	3.09
1759	5119	1.327460	CCAATATCCGTGTGCTGAACG	59.673	52.381	0.29	0.29	40.70	3.95
1809	5169	1.227943	GCCGCTGCATATGGAAGGA	60.228	57.895	18.45	0.00	37.47	3.36
1863	5336	2.912956	TGGGAAGCTCTATTTGGTCTGT	59.087	45.455	0.00	0.00	0.00	3.41
2248	5733	9.303537	GAATGTTACTTTCTCGCTAGAGTAAAT	57.696	33.333	0.00	0.00	44.65	1.40
2260	5746	3.199880	AGAGTAAATCAAGATGCCCCG	57.800	47.619	0.00	0.00	0.00	5.73
2282	5768	5.344884	CGTTGTTGTTGGGAATTGTTAGTT	58.655	37.500	0.00	0.00	0.00	2.24
2296	5782	8.030692	GGAATTGTTAGTTATTTGTGTAACCCC	58.969	37.037	0.00	0.00	35.62	4.95
2299	5785	7.455641	TGTTAGTTATTTGTGTAACCCCATG	57.544	36.000	0.00	0.00	35.62	3.66
2307	5793	7.921786	ATTTGTGTAACCCCATGATATATCG	57.078	36.000	8.19	0.00	34.36	2.92
2404	5902	6.736581	TCTATGGGGATTAACAATGTTTCCA	58.263	36.000	16.12	11.31	0.00	3.53
2453	6004	8.594550	TGGTTCTCAGTTACTTAATTAGCTCTT	58.405	33.333	0.00	0.00	0.00	2.85
2468	6019	8.691661	AATTAGCTCTTTGTCCTTTGTAGAAA	57.308	30.769	0.00	0.00	0.00	2.52
2469	6020	8.691661	ATTAGCTCTTTGTCCTTTGTAGAAAA	57.308	30.769	0.00	0.00	0.00	2.29
2470	6021	8.514330	TTAGCTCTTTGTCCTTTGTAGAAAAA	57.486	30.769	0.00	0.00	0.00	1.94
2511	6062	2.210116	AGCAACGTGTTGACCTAACTG	58.790	47.619	16.48	0.00	42.93	3.16
2513	6064	2.353579	GCAACGTGTTGACCTAACTGTT	59.646	45.455	16.48	0.00	42.93	3.16
2552	6103	9.851686	TCACTGTATCAATAGAATTAGGCAAAT	57.148	29.630	0.00	0.00	0.00	2.32
2677	7604	6.493115	ACTGGTCATTTGGAAATATTGTGTCA	59.507	34.615	0.00	0.00	0.00	3.58
2694	7621	3.133003	GTGTCAGCCTAGCTATTTGGAGA	59.867	47.826	1.75	0.00	36.40	3.71
2696	7623	4.225042	TGTCAGCCTAGCTATTTGGAGAAA	59.775	41.667	1.75	0.00	36.40	2.52
2713	7640	3.365472	AGAAAGTCCAGGTTTGCAGTTT	58.635	40.909	0.00	0.00	0.00	2.66
2721	7648	5.048083	GTCCAGGTTTGCAGTTTTGATGATA	60.048	40.000	0.00	0.00	0.00	2.15
2728	7655	3.195396	TGCAGTTTTGATGATAAAGGGCC	59.805	43.478	0.00	0.00	0.00	5.80
2739	7666	1.170442	TAAAGGGCCAGTTTAAGCGC	58.830	50.000	6.18	0.00	41.87	5.92
2743	7670	1.532604	GGGCCAGTTTAAGCGCCTTT	61.533	55.000	4.39	0.00	41.35	3.11
2812	7739	5.235616	ACACATTTGAAATTTGCTCAAGCTG	59.764	36.000	4.11	0.00	42.66	4.24
2821	7748	2.559840	CTCAAGCTGCTGTTGCCG	59.440	61.111	1.35	0.00	38.71	5.69
2843	7770	1.303643	CAACCCCAAGGACTCTGCC	60.304	63.158	0.00	0.00	36.73	4.85
2844	7771	1.464198	AACCCCAAGGACTCTGCCT	60.464	57.895	0.00	0.00	40.93	4.75
2875	7802	0.978146	AAGATACCGCTGCCTCCAGT	60.978	55.000	0.00	0.00	41.26	4.00
2887	7814	1.003580	GCCTCCAGTCCTTGAATCACA	59.996	52.381	0.00	0.00	0.00	3.58
2932	7859	7.087639	GCTGTATAGATGGAGTTCATGTAGAC	58.912	42.308	6.43	6.43	41.42	2.59
2941	7868	5.012046	TGGAGTTCATGTAGACTGTTGTGAT	59.988	40.000	0.00	0.00	0.00	3.06
2945	7872	7.671302	AGTTCATGTAGACTGTTGTGATAGTT	58.329	34.615	0.00	0.00	0.00	2.24
2955	7882	6.644347	ACTGTTGTGATAGTTGGATTCCTAG	58.356	40.000	3.95	0.00	0.00	3.02
2959	7886	8.038944	TGTTGTGATAGTTGGATTCCTAGTTAC	58.961	37.037	3.95	1.61	0.00	2.50
2969	7896	4.686554	GGATTCCTAGTTACAGCGCTAATG	59.313	45.833	10.99	0.20	0.00	1.90
2989	7916	2.018515	GCCCCATTTTGCATCCAATTG	58.981	47.619	0.00	0.00	0.00	2.32
3019	7946	2.287909	GCAATAGTTTTCACGCCAACCA	60.288	45.455	0.00	0.00	0.00	3.67
3045	7974	1.367659	CTGCTCTGCTAAGCTGAACC	58.632	55.000	11.36	0.00	42.07	3.62
3052	7981	2.290641	CTGCTAAGCTGAACCGTTTTGT	59.709	45.455	0.00	0.00	0.00	2.83
3059	7988	3.630312	AGCTGAACCGTTTTGTTGTATGT	59.370	39.130	0.00	0.00	0.00	2.29
3067	7996	6.391537	ACCGTTTTGTTGTATGTCAGTTTTT	58.608	32.000	0.00	0.00	0.00	1.94
3108	8037	4.456280	ACTTGTAGAACTCATCGCATGA	57.544	40.909	0.00	0.05	37.76	3.07
3133	8062	6.908870	TGACCATAGTTGATTGATCTTTCG	57.091	37.500	0.00	0.00	0.00	3.46

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
145	147	1.531739	GCGTTTTCATGGCCCCTCAA	61.532	55.000	0.00	0.00	0.00	3.02
159	161	0.671796	CGAAAAAGGAAGGGGCGTTT	59.328	50.000	0.00	0.00	0.00	3.60
168	170	1.144093	TCCTCCAAGCCGAAAAAGGAA	59.856	47.619	0.00	0.00	30.19	3.36
173	175	1.810151	CGAAATCCTCCAAGCCGAAAA	59.190	47.619	0.00	0.00	0.00	2.29
258	260	5.009631	TCACCCAAAAATGTCAAGATCGAT	58.990	37.500	0.00	0.00	0.00	3.59
265	267	6.409704	TCAACAAATCACCCAAAAATGTCAA	58.590	32.000	0.00	0.00	0.00	3.18
286	292	0.250124	ACAACTCCAACGCGGATCAA	60.250	50.000	12.47	0.00	45.19	2.57
317	323	4.009002	GAGTAGGTTCACCTCTAAGTCGT	58.991	47.826	0.39	0.00	44.77	4.34
337	344	7.554118	AGTTGATTACCATGACTACCAATTGAG	59.446	37.037	7.12	0.00	0.00	3.02
358	365	2.431057	GCCGAGGATCCTTCTAAGTTGA	59.569	50.000	17.42	0.00	0.00	3.18
540	552	8.777865	TGATTCGAGTGTTAAAATTCAGATCT	57.222	30.769	0.00	0.00	0.00	2.75
613	630	3.535561	CCATGTGTTCTCGCTATCCTTT	58.464	45.455	0.00	0.00	0.00	3.11
615	632	1.414181	CCCATGTGTTCTCGCTATCCT	59.586	52.381	0.00	0.00	0.00	3.24
624	641	0.321671	CGTCAGGTCCCATGTGTTCT	59.678	55.000	0.00	0.00	0.00	3.01
627	644	0.472471	AAACGTCAGGTCCCATGTGT	59.528	50.000	0.00	0.00	0.00	3.72
651	669	2.108168	ACTACCACGCCATGTCTACAT	58.892	47.619	0.00	0.00	36.96	2.29
655	673	2.151202	CAAAACTACCACGCCATGTCT	58.849	47.619	0.00	0.00	0.00	3.41
659	677	2.263153	GGCAAAACTACCACGCCAT	58.737	52.632	0.00	0.00	42.50	4.40
733	759	2.263077	CGCATAGCTCTCGACAGTTTT	58.737	47.619	0.00	0.00	0.00	2.43
784	810	2.100410	TCGATGTGAGCGCTCGAC	59.900	61.111	30.75	26.94	36.57	4.20
890	917	0.108585	AGCCCATAACCACATAGGCG	59.891	55.000	0.00	0.00	45.16	5.52
904	931	0.106918	CCGTAAGCCCATTAAGCCCA	60.107	55.000	0.00	0.00	0.00	5.36
968	1981	2.619074	GGAAATGAGTGAAGGAGGTGGG	60.619	54.545	0.00	0.00	0.00	4.61
971	1984	2.982488	ACTGGAAATGAGTGAAGGAGGT	59.018	45.455	0.00	0.00	0.00	3.85
1353	4710	4.165565	TCCTTATCGTCTTCAGGGAGTAGA	59.834	45.833	0.00	0.00	0.00	2.59
1759	5119	1.975363	GAGAATCGCAGTGTGGCAGC	61.975	60.000	3.37	0.00	0.00	5.25
1809	5169	2.111792	ACCAGGCTTAAATTCCCCTTGT	59.888	45.455	0.00	0.00	0.00	3.16
1853	5326	1.539827	GCTTAACCGCACAGACCAAAT	59.460	47.619	0.00	0.00	0.00	2.32
2248	5733	0.179004	ACAACAACGGGGCATCTTGA	60.179	50.000	0.00	0.00	0.00	3.02
2260	5746	8.880878	AATAACTAACAATTCCCAACAACAAC	57.119	30.769	0.00	0.00	0.00	3.32
2282	5768	8.598916	ACGATATATCATGGGGTTACACAAATA	58.401	33.333	13.11	0.00	0.00	1.40
2296	5782	7.756722	TCATGTCAGCTACAACGATATATCATG	59.243	37.037	13.11	12.44	42.70	3.07
2299	5785	9.958234	ATATCATGTCAGCTACAACGATATATC	57.042	33.333	17.89	2.34	41.20	1.63
2307	5793	8.853345	CAAAAACAATATCATGTCAGCTACAAC	58.147	33.333	0.00	0.00	42.70	3.32
2404	5902	4.870636	TCTGAGTTCCCATTTGGCATTAT	58.129	39.130	0.00	0.00	0.00	1.28
2470	6021	9.520204	GTTGCTTCACATTTACATTATTAGCAT	57.480	29.630	0.00	0.00	35.18	3.79
2489	6040	2.870411	AGTTAGGTCAACACGTTGCTTC	59.130	45.455	5.01	0.00	39.81	3.86
2571	6122	6.694447	AGCTTCATTTATGTCAACTGCAAAT	58.306	32.000	0.00	0.00	0.00	2.32
2575	6126	6.668541	TCTAGCTTCATTTATGTCAACTGC	57.331	37.500	0.00	0.00	0.00	4.40
2628	6179	5.220710	ACACTGATAGGATCCAACTATGC	57.779	43.478	15.82	0.00	31.58	3.14
2677	7604	4.141597	GGACTTTCTCCAAATAGCTAGGCT	60.142	45.833	0.00	0.00	39.83	4.58
2694	7621	3.513515	TCAAAACTGCAAACCTGGACTTT	59.486	39.130	0.00	0.00	0.00	2.66
2696	7623	2.733956	TCAAAACTGCAAACCTGGACT	58.266	42.857	0.00	0.00	0.00	3.85
2704	7631	5.237048	GCCCTTTATCATCAAAACTGCAAA	58.763	37.500	0.00	0.00	0.00	3.68
2713	7640	5.127031	GCTTAAACTGGCCCTTTATCATCAA	59.873	40.000	0.00	0.00	0.00	2.57
2721	7648	1.532604	GGCGCTTAAACTGGCCCTTT	61.533	55.000	7.64	0.00	39.67	3.11
2728	7655	3.668656	GTGCTTAAAAGGCGCTTAAACTG	59.331	43.478	7.64	0.00	37.25	3.16
2766	7693	4.386652	GTGTTTCAAGCTGCAATACCATTG	59.613	41.667	1.02	0.00	0.00	2.82
2768	7695	3.573538	TGTGTTTCAAGCTGCAATACCAT	59.426	39.130	1.02	0.00	0.00	3.55
2771	7698	3.963665	TGTGTGTTTCAAGCTGCAATAC	58.036	40.909	1.02	0.00	0.00	1.89
2821	7748	2.716217	CAGAGTCCTTGGGGTTGATTC	58.284	52.381	0.00	0.00	0.00	2.52
2843	7770	2.043227	GGTATCTTCAGGAGGTGGGAG	58.957	57.143	0.00	0.00	0.00	4.30
2844	7771	1.688311	CGGTATCTTCAGGAGGTGGGA	60.688	57.143	0.00	0.00	0.00	4.37
2875	7802	4.233632	TGCATACCATGTGATTCAAGGA	57.766	40.909	7.75	0.00	38.19	3.36
2932	7859	6.644347	ACTAGGAATCCAACTATCACAACAG	58.356	40.000	0.61	0.00	0.00	3.16
2941	7868	4.441079	GCGCTGTAACTAGGAATCCAACTA	60.441	45.833	0.00	0.00	0.00	2.24
2945	7872	2.108168	AGCGCTGTAACTAGGAATCCA	58.892	47.619	10.39	0.00	0.00	3.41
2969	7896	2.018515	CAATTGGATGCAAAATGGGGC	58.981	47.619	2.94	0.00	0.00	5.80
2995	7922	3.214697	TGGCGTGAAAACTATTGCATG	57.785	42.857	0.00	0.00	34.62	4.06
3000	7927	2.952978	TGTGGTTGGCGTGAAAACTATT	59.047	40.909	0.00	0.00	0.00	1.73
3108	8037	7.012704	CCGAAAGATCAATCAACTATGGTCAAT	59.987	37.037	0.00	0.00	0.00	2.57
3133	8062	5.242838	TCAAAAAGATGTGTACCATTGACCC	59.757	40.000	0.00	0.00	32.56	4.46
3157	8086	9.959721	ATAGTCTACACCACACAGAAAATATTT	57.040	29.630	0.00	0.00	0.00	1.40
3165	8094	7.067129	GTCTATCAATAGTCTACACCACACAGA	59.933	40.741	0.00	0.00	0.00	3.41
3167	8096	6.890268	AGTCTATCAATAGTCTACACCACACA	59.110	38.462	0.00	0.00	29.19	3.72

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.