Multiple sequence alignment - TraesCS1D01G207700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G207700 chr1D 100.000 4034 0 0 1 4034 293916291 293912258 0.000000e+00 7450.0
1 TraesCS1D01G207700 chr1D 77.458 661 143 6 994 1651 293950021 293949364 1.360000e-104 390.0
2 TraesCS1D01G207700 chr1D 76.606 654 136 16 1012 1658 293934424 293933781 1.070000e-90 344.0
3 TraesCS1D01G207700 chr1D 93.333 180 8 2 2415 2590 293913704 293913525 3.090000e-66 263.0
4 TraesCS1D01G207700 chr1D 93.333 180 8 2 2588 2767 293913877 293913702 3.090000e-66 263.0
5 TraesCS1D01G207700 chr1A 95.055 1375 64 3 969 2339 366277554 366276180 0.000000e+00 2159.0
6 TraesCS1D01G207700 chr1A 93.080 867 36 10 2588 3436 366276074 366275214 0.000000e+00 1247.0
7 TraesCS1D01G207700 chr1A 91.400 407 14 9 3542 3944 366274508 366274119 4.590000e-149 538.0
8 TraesCS1D01G207700 chr1A 81.790 648 96 12 183 827 564770489 564769861 1.280000e-144 523.0
9 TraesCS1D01G207700 chr1A 77.006 648 136 11 1012 1651 366368096 366367454 3.830000e-95 359.0
10 TraesCS1D01G207700 chr1A 93.088 217 11 2 2378 2590 366276111 366275895 8.420000e-82 315.0
11 TraesCS1D01G207700 chr1A 93.805 113 6 1 841 952 366277651 366277539 6.930000e-38 169.0
12 TraesCS1D01G207700 chr1A 98.913 92 1 0 3943 4034 366273958 366273867 8.970000e-37 165.0
13 TraesCS1D01G207700 chr1B 95.117 1372 52 3 969 2339 395260256 395258899 0.000000e+00 2148.0
14 TraesCS1D01G207700 chr1B 94.831 1122 45 3 1219 2339 395254899 395253790 0.000000e+00 1738.0
15 TraesCS1D01G207700 chr1B 90.102 879 49 10 2588 3436 395253667 395252797 0.000000e+00 1107.0
16 TraesCS1D01G207700 chr1B 93.257 608 20 9 3436 4034 395252705 395252110 0.000000e+00 876.0
17 TraesCS1D01G207700 chr1B 88.927 578 36 5 2588 3142 395258776 395258204 0.000000e+00 688.0
18 TraesCS1D01G207700 chr1B 78.056 638 136 4 1016 1651 395310705 395310070 2.260000e-107 399.0
19 TraesCS1D01G207700 chr1B 92.520 254 16 2 2340 2590 395253744 395253491 1.070000e-95 361.0
20 TraesCS1D01G207700 chr1B 92.520 254 16 2 2340 2590 395258853 395258600 1.070000e-95 361.0
21 TraesCS1D01G207700 chr1B 75.382 654 144 16 1012 1658 395277501 395276858 2.360000e-77 300.0
22 TraesCS1D01G207700 chr1B 75.916 191 46 0 1775 1965 395276771 395276581 9.230000e-17 99.0
23 TraesCS1D01G207700 chrUn 94.831 1122 45 3 1219 2339 296014951 296013842 0.000000e+00 1738.0
24 TraesCS1D01G207700 chrUn 88.927 578 36 5 2588 3142 296013719 296013147 0.000000e+00 688.0
25 TraesCS1D01G207700 chrUn 92.520 254 16 2 2340 2590 296013796 296013543 1.070000e-95 361.0
26 TraesCS1D01G207700 chr2D 98.068 828 11 3 1 828 89092230 89091408 0.000000e+00 1435.0
27 TraesCS1D01G207700 chr2D 97.101 828 16 5 1 828 105007385 105008204 0.000000e+00 1389.0
28 TraesCS1D01G207700 chr2D 85.000 100 10 5 87 183 609315858 609315955 3.320000e-16 97.1
29 TraesCS1D01G207700 chr4D 96.135 828 13 4 1 828 491708613 491707805 0.000000e+00 1334.0
30 TraesCS1D01G207700 chr7B 95.175 829 32 5 1 828 144287322 144288143 0.000000e+00 1303.0
31 TraesCS1D01G207700 chr5B 95.175 829 33 4 1 828 497753672 497752850 0.000000e+00 1303.0
32 TraesCS1D01G207700 chr5B 90.196 51 5 0 2175 2225 407240640 407240590 2.600000e-07 67.6
33 TraesCS1D01G207700 chr5B 77.236 123 20 5 2105 2223 525882478 525882596 9.360000e-07 65.8
34 TraesCS1D01G207700 chr5B 77.236 123 20 5 2105 2223 525936631 525936749 9.360000e-07 65.8
35 TraesCS1D01G207700 chr5B 89.796 49 5 0 2175 2223 525833442 525833490 3.370000e-06 63.9
36 TraesCS1D01G207700 chr3A 95.017 582 18 3 253 828 579516099 579516675 0.000000e+00 904.0
37 TraesCS1D01G207700 chr2A 88.486 469 45 6 368 835 197279635 197279175 3.520000e-155 558.0
38 TraesCS1D01G207700 chr2A 85.567 97 11 3 87 181 741236984 741237079 9.230000e-17 99.0
39 TraesCS1D01G207700 chr5D 84.768 302 42 4 1060 1359 506949936 506949637 2.360000e-77 300.0
40 TraesCS1D01G207700 chr5D 88.679 53 5 1 2175 2227 344535479 344535530 3.370000e-06 63.9
41 TraesCS1D01G207700 chr5A 83.775 302 45 4 1060 1359 634488276 634487977 2.370000e-72 283.0
42 TraesCS1D01G207700 chr2B 83.838 99 13 3 87 183 743360104 743360201 1.540000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G207700 chr1D 293912258 293916291 4033 True 2658.666667 7450 95.555333 1 4034 3 chr1D.!!$R3 4033
1 TraesCS1D01G207700 chr1D 293949364 293950021 657 True 390.000000 390 77.458000 994 1651 1 chr1D.!!$R2 657
2 TraesCS1D01G207700 chr1D 293933781 293934424 643 True 344.000000 344 76.606000 1012 1658 1 chr1D.!!$R1 646
3 TraesCS1D01G207700 chr1A 366273867 366277651 3784 True 765.500000 2159 94.223500 841 4034 6 chr1A.!!$R3 3193
4 TraesCS1D01G207700 chr1A 564769861 564770489 628 True 523.000000 523 81.790000 183 827 1 chr1A.!!$R2 644
5 TraesCS1D01G207700 chr1A 366367454 366368096 642 True 359.000000 359 77.006000 1012 1651 1 chr1A.!!$R1 639
6 TraesCS1D01G207700 chr1B 395252110 395260256 8146 True 1039.857143 2148 92.467714 969 4034 7 chr1B.!!$R2 3065
7 TraesCS1D01G207700 chr1B 395310070 395310705 635 True 399.000000 399 78.056000 1016 1651 1 chr1B.!!$R1 635
8 TraesCS1D01G207700 chrUn 296013147 296014951 1804 True 929.000000 1738 92.092667 1219 3142 3 chrUn.!!$R1 1923
9 TraesCS1D01G207700 chr2D 89091408 89092230 822 True 1435.000000 1435 98.068000 1 828 1 chr2D.!!$R1 827
10 TraesCS1D01G207700 chr2D 105007385 105008204 819 False 1389.000000 1389 97.101000 1 828 1 chr2D.!!$F1 827
11 TraesCS1D01G207700 chr4D 491707805 491708613 808 True 1334.000000 1334 96.135000 1 828 1 chr4D.!!$R1 827
12 TraesCS1D01G207700 chr7B 144287322 144288143 821 False 1303.000000 1303 95.175000 1 828 1 chr7B.!!$F1 827
13 TraesCS1D01G207700 chr5B 497752850 497753672 822 True 1303.000000 1303 95.175000 1 828 1 chr5B.!!$R2 827
14 TraesCS1D01G207700 chr3A 579516099 579516675 576 False 904.000000 904 95.017000 253 828 1 chr3A.!!$F1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
828 858 0.521867 CCGCATGTGCAATTCACTCG 60.522 55.0 0.00 8.84 45.81 4.18 F
829 859 0.521867 CGCATGTGCAATTCACTCGG 60.522 55.0 5.77 2.03 45.81 4.63 F
831 861 0.522626 CATGTGCAATTCACTCGGCA 59.477 50.0 0.00 0.00 45.81 5.69 F
1878 7012 0.622665 CCAAGGATGGGAAGCTCTGT 59.377 55.0 0.00 0.00 43.51 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1821 6955 0.036010 CTCCTTGCCCTTCGATGTGT 60.036 55.000 0.0 0.0 0.00 3.72 R
1871 7005 1.068281 CAGTGCCGATGATACAGAGCT 59.932 52.381 0.0 0.0 0.00 4.09 R
1885 7019 1.668419 AGTGTGAGTTTGACAGTGCC 58.332 50.000 0.0 0.0 0.00 5.01 R
3507 9027 0.249955 TCATGCAACTCCGATGCTCA 59.750 50.000 0.0 0.0 44.14 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
238 239 5.357742 AAAGCCAAGAACAATGAAACCTT 57.642 34.783 0.00 0.00 0.00 3.50
251 252 6.322201 ACAATGAAACCTTCACTTCTGTTCAT 59.678 34.615 0.00 0.00 43.48 2.57
319 320 0.611618 AATGCCCGCAACTCCAATGA 60.612 50.000 0.00 0.00 0.00 2.57
320 321 0.611618 ATGCCCGCAACTCCAATGAA 60.612 50.000 0.00 0.00 0.00 2.57
481 492 2.978565 TCGCCGATCGCCTCCTAG 60.979 66.667 10.32 0.00 38.27 3.02
583 594 2.573609 AATCAGCGTACGTCCAGCCC 62.574 60.000 17.90 0.00 0.00 5.19
743 773 4.685924 GATGGACCATATTGGCAAGTTTG 58.314 43.478 7.05 3.08 42.67 2.93
828 858 0.521867 CCGCATGTGCAATTCACTCG 60.522 55.000 0.00 8.84 45.81 4.18
829 859 0.521867 CGCATGTGCAATTCACTCGG 60.522 55.000 5.77 2.03 45.81 4.63
830 860 0.799534 GCATGTGCAATTCACTCGGC 60.800 55.000 0.00 6.53 45.81 5.54
831 861 0.522626 CATGTGCAATTCACTCGGCA 59.477 50.000 0.00 0.00 45.81 5.69
832 862 1.133598 CATGTGCAATTCACTCGGCAT 59.866 47.619 0.00 0.00 45.81 4.40
833 863 1.246649 TGTGCAATTCACTCGGCATT 58.753 45.000 0.00 0.00 45.81 3.56
834 864 1.199789 TGTGCAATTCACTCGGCATTC 59.800 47.619 0.00 0.00 45.81 2.67
835 865 1.470098 GTGCAATTCACTCGGCATTCT 59.530 47.619 0.00 0.00 42.38 2.40
836 866 2.677836 GTGCAATTCACTCGGCATTCTA 59.322 45.455 0.00 0.00 42.38 2.10
837 867 2.677836 TGCAATTCACTCGGCATTCTAC 59.322 45.455 0.00 0.00 0.00 2.59
838 868 2.939103 GCAATTCACTCGGCATTCTACT 59.061 45.455 0.00 0.00 0.00 2.57
839 869 4.119862 GCAATTCACTCGGCATTCTACTA 58.880 43.478 0.00 0.00 0.00 1.82
856 886 2.701551 ACTATAGCAACTGGGCCCATA 58.298 47.619 28.82 15.49 0.00 2.74
885 916 3.708734 CGCGTTTCGACGGGCTTT 61.709 61.111 0.00 0.00 41.67 3.51
912 943 2.359967 ACGGCCCTTGCTCTCCTAC 61.360 63.158 0.00 0.00 37.74 3.18
918 949 1.484240 CCCTTGCTCTCCTACCTTCTG 59.516 57.143 0.00 0.00 0.00 3.02
940 971 1.734465 CTTGAAACGAGATCACAGCCC 59.266 52.381 0.00 0.00 0.00 5.19
947 978 1.494960 GAGATCACAGCCCTCCTTCT 58.505 55.000 0.00 0.00 0.00 2.85
948 979 1.412343 GAGATCACAGCCCTCCTTCTC 59.588 57.143 0.00 0.00 0.00 2.87
949 980 1.008206 AGATCACAGCCCTCCTTCTCT 59.992 52.381 0.00 0.00 0.00 3.10
950 981 1.836802 GATCACAGCCCTCCTTCTCTT 59.163 52.381 0.00 0.00 0.00 2.85
951 982 1.734655 TCACAGCCCTCCTTCTCTTT 58.265 50.000 0.00 0.00 0.00 2.52
952 983 1.349026 TCACAGCCCTCCTTCTCTTTG 59.651 52.381 0.00 0.00 0.00 2.77
953 984 1.072965 CACAGCCCTCCTTCTCTTTGT 59.927 52.381 0.00 0.00 0.00 2.83
954 985 1.349357 ACAGCCCTCCTTCTCTTTGTC 59.651 52.381 0.00 0.00 0.00 3.18
955 986 1.627834 CAGCCCTCCTTCTCTTTGTCT 59.372 52.381 0.00 0.00 0.00 3.41
956 987 1.905894 AGCCCTCCTTCTCTTTGTCTC 59.094 52.381 0.00 0.00 0.00 3.36
957 988 1.625818 GCCCTCCTTCTCTTTGTCTCA 59.374 52.381 0.00 0.00 0.00 3.27
958 989 2.039084 GCCCTCCTTCTCTTTGTCTCAA 59.961 50.000 0.00 0.00 0.00 3.02
959 990 3.496870 GCCCTCCTTCTCTTTGTCTCAAA 60.497 47.826 0.00 0.00 0.00 2.69
960 991 4.718961 CCCTCCTTCTCTTTGTCTCAAAA 58.281 43.478 0.00 0.00 0.00 2.44
961 992 5.133221 CCCTCCTTCTCTTTGTCTCAAAAA 58.867 41.667 0.00 0.00 0.00 1.94
1058 1095 4.483243 GAAATCCCCAGCGGCCGA 62.483 66.667 33.48 6.95 0.00 5.54
1514 1551 1.142778 GGCGAGATCTGCGAAGACAC 61.143 60.000 15.71 0.00 0.00 3.67
1718 6852 1.583054 GAGAAGTGTTCTGGCAACGT 58.417 50.000 0.00 0.00 40.87 3.99
1743 6877 0.899720 TGGTGAACGGGTCCATCTAC 59.100 55.000 0.00 0.00 0.00 2.59
1806 6940 0.994995 CGACATTGCACTTCTCTCGG 59.005 55.000 0.00 0.00 0.00 4.63
1821 6955 3.147595 CGGATCGACCTGCCTCCA 61.148 66.667 1.70 0.00 36.31 3.86
1878 7012 0.622665 CCAAGGATGGGAAGCTCTGT 59.377 55.000 0.00 0.00 43.51 3.41
1885 7019 3.583806 GATGGGAAGCTCTGTATCATCG 58.416 50.000 0.00 0.00 0.00 3.84
1896 7030 3.056179 TCTGTATCATCGGCACTGTCAAA 60.056 43.478 0.00 0.00 0.00 2.69
1965 7099 1.639298 GATGGACGCAGCACAAGACC 61.639 60.000 0.00 0.00 0.00 3.85
2079 7213 7.337480 TGTGTACTTGTCTACTTACTGTGAA 57.663 36.000 0.00 0.00 0.00 3.18
2100 7234 2.329339 GATCGCGATTTGCCTGGC 59.671 61.111 24.55 12.87 42.08 4.85
2109 7243 2.446435 GATTTGCCTGGCTTGTTCCTA 58.554 47.619 21.03 0.00 0.00 2.94
2166 7300 1.347707 TGCACTGTCCTTTACCCTGAG 59.652 52.381 0.00 0.00 0.00 3.35
2262 7396 1.203523 GACAGGTCGTCTTCTGCAGAT 59.796 52.381 19.04 0.00 41.81 2.90
2315 7449 7.147863 CCCTTATATCTCATGGAGATCTGACAG 60.148 44.444 11.72 0.00 45.03 3.51
2356 7536 9.713740 GAAAACAGAGATCAGCAACATTTATAG 57.286 33.333 0.00 0.00 0.00 1.31
2394 7576 6.699575 AATGACTTGTTTCTAGTGTGCTTT 57.300 33.333 0.00 0.00 0.00 3.51
2405 7587 5.779922 TCTAGTGTGCTTTGAACGACTATT 58.220 37.500 0.00 0.00 0.00 1.73
2411 7593 8.818057 AGTGTGCTTTGAACGACTATTATTATC 58.182 33.333 0.00 0.00 0.00 1.75
2583 7769 7.447243 AAGTACGCGTAGTTAGAAATTCATC 57.553 36.000 32.19 11.01 0.00 2.92
2584 7770 5.975939 AGTACGCGTAGTTAGAAATTCATCC 59.024 40.000 21.25 1.55 0.00 3.51
2585 7771 5.007385 ACGCGTAGTTAGAAATTCATCCT 57.993 39.130 11.67 0.00 0.00 3.24
2586 7772 5.041940 ACGCGTAGTTAGAAATTCATCCTC 58.958 41.667 11.67 0.00 0.00 3.71
2587 7773 4.444720 CGCGTAGTTAGAAATTCATCCTCC 59.555 45.833 0.00 0.00 0.00 4.30
2588 7774 4.750598 GCGTAGTTAGAAATTCATCCTCCC 59.249 45.833 0.00 0.00 0.00 4.30
2589 7775 5.453480 GCGTAGTTAGAAATTCATCCTCCCT 60.453 44.000 0.00 0.00 0.00 4.20
2590 7776 6.583562 CGTAGTTAGAAATTCATCCTCCCTT 58.416 40.000 0.00 0.00 0.00 3.95
2591 7777 7.048512 CGTAGTTAGAAATTCATCCTCCCTTT 58.951 38.462 0.00 0.00 0.00 3.11
2592 7778 7.224949 CGTAGTTAGAAATTCATCCTCCCTTTC 59.775 40.741 0.00 0.00 0.00 2.62
2593 7779 7.277405 AGTTAGAAATTCATCCTCCCTTTCT 57.723 36.000 0.00 0.00 39.03 2.52
2594 7780 7.342581 AGTTAGAAATTCATCCTCCCTTTCTC 58.657 38.462 0.00 0.00 37.37 2.87
2595 7781 7.183657 AGTTAGAAATTCATCCTCCCTTTCTCT 59.816 37.037 0.00 0.00 37.37 3.10
2596 7782 6.000246 AGAAATTCATCCTCCCTTTCTCTC 58.000 41.667 0.00 0.00 32.23 3.20
2597 7783 5.490357 AGAAATTCATCCTCCCTTTCTCTCA 59.510 40.000 0.00 0.00 32.23 3.27
2598 7784 5.990713 AATTCATCCTCCCTTTCTCTCAT 57.009 39.130 0.00 0.00 0.00 2.90
2599 7785 7.349330 AGAAATTCATCCTCCCTTTCTCTCATA 59.651 37.037 0.00 0.00 32.23 2.15
2600 7786 7.457380 AATTCATCCTCCCTTTCTCTCATAA 57.543 36.000 0.00 0.00 0.00 1.90
2601 7787 7.645132 ATTCATCCTCCCTTTCTCTCATAAT 57.355 36.000 0.00 0.00 0.00 1.28
2602 7788 8.748179 ATTCATCCTCCCTTTCTCTCATAATA 57.252 34.615 0.00 0.00 0.00 0.98
2603 7789 8.748179 TTCATCCTCCCTTTCTCTCATAATAT 57.252 34.615 0.00 0.00 0.00 1.28
2604 7790 8.143673 TCATCCTCCCTTTCTCTCATAATATG 57.856 38.462 0.00 0.00 0.00 1.78
2605 7791 7.736691 TCATCCTCCCTTTCTCTCATAATATGT 59.263 37.037 0.00 0.00 0.00 2.29
2606 7792 9.040259 CATCCTCCCTTTCTCTCATAATATGTA 57.960 37.037 0.00 0.00 0.00 2.29
2607 7793 9.796242 ATCCTCCCTTTCTCTCATAATATGTAT 57.204 33.333 0.00 0.00 0.00 2.29
2608 7794 9.621239 TCCTCCCTTTCTCTCATAATATGTATT 57.379 33.333 0.00 0.00 0.00 1.89
2650 7836 9.713713 TTATCATATAGTAAATGTTAAGCGGCA 57.286 29.630 1.45 0.00 0.00 5.69
2651 7837 8.792830 ATCATATAGTAAATGTTAAGCGGCAT 57.207 30.769 1.45 0.00 0.00 4.40
2652 7838 8.028540 TCATATAGTAAATGTTAAGCGGCATG 57.971 34.615 1.45 0.00 0.00 4.06
2653 7839 3.420839 AGTAAATGTTAAGCGGCATGC 57.579 42.857 9.90 9.90 46.98 4.06
2665 7851 4.585070 GCATGCTGGCCCTGATTA 57.415 55.556 11.37 0.00 0.00 1.75
2666 7852 3.047039 GCATGCTGGCCCTGATTAT 57.953 52.632 11.37 0.00 0.00 1.28
2667 7853 2.205022 GCATGCTGGCCCTGATTATA 57.795 50.000 11.37 0.00 0.00 0.98
2668 7854 2.731572 GCATGCTGGCCCTGATTATAT 58.268 47.619 11.37 0.00 0.00 0.86
2669 7855 3.889815 GCATGCTGGCCCTGATTATATA 58.110 45.455 11.37 0.00 0.00 0.86
2670 7856 4.467769 GCATGCTGGCCCTGATTATATAT 58.532 43.478 11.37 0.00 0.00 0.86
2671 7857 4.277672 GCATGCTGGCCCTGATTATATATG 59.722 45.833 11.37 0.00 0.00 1.78
2672 7858 5.687780 CATGCTGGCCCTGATTATATATGA 58.312 41.667 0.00 0.00 0.00 2.15
2673 7859 5.777526 TGCTGGCCCTGATTATATATGAA 57.222 39.130 0.00 0.00 0.00 2.57
2674 7860 6.138391 TGCTGGCCCTGATTATATATGAAA 57.862 37.500 0.00 0.00 0.00 2.69
2675 7861 5.945784 TGCTGGCCCTGATTATATATGAAAC 59.054 40.000 0.00 0.00 0.00 2.78
2676 7862 5.065218 GCTGGCCCTGATTATATATGAAACG 59.935 44.000 0.00 0.00 0.00 3.60
2677 7863 6.121776 TGGCCCTGATTATATATGAAACGT 57.878 37.500 0.00 0.00 0.00 3.99
2678 7864 7.247456 TGGCCCTGATTATATATGAAACGTA 57.753 36.000 0.00 0.00 0.00 3.57
2679 7865 7.681679 TGGCCCTGATTATATATGAAACGTAA 58.318 34.615 0.00 0.00 0.00 3.18
2680 7866 8.158132 TGGCCCTGATTATATATGAAACGTAAA 58.842 33.333 0.00 0.00 0.00 2.01
2681 7867 9.005777 GGCCCTGATTATATATGAAACGTAAAA 57.994 33.333 0.00 0.00 0.00 1.52
2693 7879 9.734620 ATATGAAACGTAAAATTGACATGGATG 57.265 29.630 0.00 0.00 0.00 3.51
2694 7880 7.208225 TGAAACGTAAAATTGACATGGATGA 57.792 32.000 0.00 0.00 0.00 2.92
2695 7881 7.652727 TGAAACGTAAAATTGACATGGATGAA 58.347 30.769 0.00 0.00 0.00 2.57
2696 7882 8.138074 TGAAACGTAAAATTGACATGGATGAAA 58.862 29.630 0.00 0.00 0.00 2.69
2697 7883 9.139174 GAAACGTAAAATTGACATGGATGAAAT 57.861 29.630 0.00 0.00 0.00 2.17
2698 7884 9.487790 AAACGTAAAATTGACATGGATGAAATT 57.512 25.926 0.00 0.00 32.86 1.82
2724 7910 6.476243 TTAATTTGCTAGAGTTCGTGTTCC 57.524 37.500 0.00 0.00 0.00 3.62
2725 7911 3.462483 TTTGCTAGAGTTCGTGTTCCA 57.538 42.857 0.00 0.00 0.00 3.53
2726 7912 3.678056 TTGCTAGAGTTCGTGTTCCAT 57.322 42.857 0.00 0.00 0.00 3.41
2727 7913 3.678056 TGCTAGAGTTCGTGTTCCATT 57.322 42.857 0.00 0.00 0.00 3.16
2728 7914 4.794278 TGCTAGAGTTCGTGTTCCATTA 57.206 40.909 0.00 0.00 0.00 1.90
2729 7915 4.491676 TGCTAGAGTTCGTGTTCCATTAC 58.508 43.478 0.00 0.00 0.00 1.89
2730 7916 4.219944 TGCTAGAGTTCGTGTTCCATTACT 59.780 41.667 0.00 0.00 0.00 2.24
2731 7917 5.169295 GCTAGAGTTCGTGTTCCATTACTT 58.831 41.667 0.00 0.00 0.00 2.24
2732 7918 5.288952 GCTAGAGTTCGTGTTCCATTACTTC 59.711 44.000 0.00 0.00 0.00 3.01
2733 7919 5.470047 AGAGTTCGTGTTCCATTACTTCT 57.530 39.130 0.00 0.00 0.00 2.85
2734 7920 6.585695 AGAGTTCGTGTTCCATTACTTCTA 57.414 37.500 0.00 0.00 0.00 2.10
2735 7921 7.171630 AGAGTTCGTGTTCCATTACTTCTAT 57.828 36.000 0.00 0.00 0.00 1.98
2736 7922 8.289939 AGAGTTCGTGTTCCATTACTTCTATA 57.710 34.615 0.00 0.00 0.00 1.31
2737 7923 8.746530 AGAGTTCGTGTTCCATTACTTCTATAA 58.253 33.333 0.00 0.00 0.00 0.98
2738 7924 8.928270 AGTTCGTGTTCCATTACTTCTATAAG 57.072 34.615 0.00 0.00 38.77 1.73
2740 7926 9.793252 GTTCGTGTTCCATTACTTCTATAAGTA 57.207 33.333 0.00 0.00 44.26 2.24
2741 7927 9.793252 TTCGTGTTCCATTACTTCTATAAGTAC 57.207 33.333 0.45 0.00 45.66 2.73
2742 7928 8.124823 TCGTGTTCCATTACTTCTATAAGTACG 58.875 37.037 0.45 2.26 45.66 3.67
2743 7929 7.096722 CGTGTTCCATTACTTCTATAAGTACGC 60.097 40.741 0.45 0.00 45.66 4.42
2744 7930 6.914215 TGTTCCATTACTTCTATAAGTACGCG 59.086 38.462 3.53 3.53 45.66 6.01
2745 7931 6.624352 TCCATTACTTCTATAAGTACGCGT 57.376 37.500 19.17 19.17 45.66 6.01
2746 7932 7.728847 TCCATTACTTCTATAAGTACGCGTA 57.271 36.000 16.41 16.41 45.66 4.42
2747 7933 8.153479 TCCATTACTTCTATAAGTACGCGTAA 57.847 34.615 22.44 5.99 45.66 3.18
2748 7934 8.786898 TCCATTACTTCTATAAGTACGCGTAAT 58.213 33.333 22.44 18.33 45.66 1.89
2749 7935 9.403110 CCATTACTTCTATAAGTACGCGTAATT 57.597 33.333 31.07 31.07 45.66 1.40
2773 7959 9.921637 ATTAGAAATTCATCCTCTCTACGATTC 57.078 33.333 0.00 0.00 0.00 2.52
2789 7975 3.130633 CGATTCGCAGTTGGGATATTGA 58.869 45.455 0.00 0.00 36.86 2.57
2804 7990 8.727100 TGGGATATTGAGACTGATAAGTACAT 57.273 34.615 0.00 0.00 0.00 2.29
2891 8100 2.048444 AGCATGCAGGATGGTAACTG 57.952 50.000 21.98 0.00 41.13 3.16
2902 8111 6.516718 CAGGATGGTAACTGATAACTAGTGG 58.483 44.000 0.00 0.00 36.86 4.00
2972 8181 4.647424 TTTCGAATTCTGCAAAACCAGT 57.353 36.364 0.00 0.00 34.47 4.00
3036 8255 2.876079 GCCCACCAGAAACTACTGAAGG 60.876 54.545 0.00 0.00 39.94 3.46
3050 8269 0.321919 TGAAGGGACATGTGCTCAGC 60.322 55.000 17.44 0.06 0.00 4.26
3076 8295 2.746362 TGCATCATTCATACGCACACAA 59.254 40.909 0.00 0.00 0.00 3.33
3255 8474 3.347216 GGCTAGAAGTGGAATTGCAAGA 58.653 45.455 4.94 0.00 0.00 3.02
3415 8640 6.144724 GGAGAGATATCTGTTGCGTTTCATAC 59.855 42.308 10.74 0.00 0.00 2.39
3691 9520 4.252073 CCAGACACATCTCTTTCCTTCAG 58.748 47.826 0.00 0.00 30.42 3.02
3719 9548 2.799978 CCAAACCGCCTTTCATTTTGTC 59.200 45.455 0.00 0.00 0.00 3.18
3838 9673 6.770303 TGTTGATCGGAAATAAATATGCTCCA 59.230 34.615 0.00 0.00 0.00 3.86
3844 9679 7.284074 TCGGAAATAAATATGCTCCACCTTTA 58.716 34.615 0.00 0.00 0.00 1.85
3845 9680 7.942341 TCGGAAATAAATATGCTCCACCTTTAT 59.058 33.333 0.00 0.00 0.00 1.40
3846 9681 8.237267 CGGAAATAAATATGCTCCACCTTTATC 58.763 37.037 0.00 0.00 0.00 1.75
3847 9682 8.237267 GGAAATAAATATGCTCCACCTTTATCG 58.763 37.037 0.00 0.00 0.00 2.92
3878 9713 2.494059 CTTCTTTTCCTGCCTTGTCGA 58.506 47.619 0.00 0.00 0.00 4.20
3901 9736 5.827568 TTTAACCACGTCGATCTTTGTAC 57.172 39.130 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
232 233 6.773976 TTTCATGAACAGAAGTGAAGGTTT 57.226 33.333 7.89 0.00 32.76 3.27
238 239 6.376864 TGTTTCCTTTTCATGAACAGAAGTGA 59.623 34.615 20.73 12.12 0.00 3.41
251 252 1.956477 GAGGCTGCTGTTTCCTTTTCA 59.044 47.619 0.00 0.00 0.00 2.69
392 403 2.666190 CGGCGGCATGATAGGGTG 60.666 66.667 10.53 0.00 0.00 4.61
393 404 3.941188 CCGGCGGCATGATAGGGT 61.941 66.667 15.42 0.00 0.00 4.34
481 492 7.150783 AGATAGCAACCATTTTGAGAGAAAC 57.849 36.000 0.00 0.00 0.00 2.78
546 557 1.161563 TTGAAACGACGAACAGGGGC 61.162 55.000 0.00 0.00 0.00 5.80
547 558 1.463444 GATTGAAACGACGAACAGGGG 59.537 52.381 0.00 0.00 0.00 4.79
548 559 2.139917 TGATTGAAACGACGAACAGGG 58.860 47.619 0.00 0.00 0.00 4.45
583 594 1.360551 CCCGCAGTACATCCTCTCG 59.639 63.158 0.00 0.00 0.00 4.04
743 773 0.735287 GTTGCCTCGTTACGGTCCTC 60.735 60.000 4.53 0.00 0.00 3.71
828 858 4.319177 CCCAGTTGCTATAGTAGAATGCC 58.681 47.826 0.84 0.00 0.00 4.40
829 859 3.748568 GCCCAGTTGCTATAGTAGAATGC 59.251 47.826 0.84 0.00 0.00 3.56
830 860 4.319177 GGCCCAGTTGCTATAGTAGAATG 58.681 47.826 0.84 0.00 0.00 2.67
831 861 3.328050 GGGCCCAGTTGCTATAGTAGAAT 59.672 47.826 19.95 0.00 0.00 2.40
832 862 2.704065 GGGCCCAGTTGCTATAGTAGAA 59.296 50.000 19.95 0.00 0.00 2.10
833 863 2.326428 GGGCCCAGTTGCTATAGTAGA 58.674 52.381 19.95 0.00 0.00 2.59
834 864 2.047061 TGGGCCCAGTTGCTATAGTAG 58.953 52.381 24.45 0.00 0.00 2.57
835 865 2.184088 TGGGCCCAGTTGCTATAGTA 57.816 50.000 24.45 0.00 0.00 1.82
836 866 1.522900 ATGGGCCCAGTTGCTATAGT 58.477 50.000 31.97 5.90 0.00 2.12
837 867 3.412386 GTTATGGGCCCAGTTGCTATAG 58.588 50.000 31.97 0.00 0.00 1.31
838 868 2.107552 GGTTATGGGCCCAGTTGCTATA 59.892 50.000 31.97 13.11 0.00 1.31
839 869 1.133482 GGTTATGGGCCCAGTTGCTAT 60.133 52.381 31.97 14.30 0.00 2.97
902 933 0.041833 AGCCAGAAGGTAGGAGAGCA 59.958 55.000 0.00 0.00 37.19 4.26
912 943 2.169832 TCTCGTTTCAAGCCAGAAGG 57.830 50.000 0.00 0.00 38.23 3.46
918 949 1.129437 GCTGTGATCTCGTTTCAAGCC 59.871 52.381 0.00 0.00 0.00 4.35
966 997 1.004161 GCAAAAGAGAAGGAGGGCTCT 59.996 52.381 0.00 0.00 43.00 4.09
967 998 1.004161 AGCAAAAGAGAAGGAGGGCTC 59.996 52.381 0.00 0.00 0.00 4.70
977 1008 1.831389 GCGCGACACAGCAAAAGAGA 61.831 55.000 12.10 0.00 36.85 3.10
979 1010 2.631428 GCGCGACACAGCAAAAGA 59.369 55.556 12.10 0.00 36.85 2.52
1029 1063 1.340114 GGGGATTTCTGCTTCTTCGGT 60.340 52.381 0.00 0.00 0.00 4.69
1058 1095 1.301716 GCGCATATGGTGGTCGGAT 60.302 57.895 0.30 0.00 0.00 4.18
1453 1490 3.637273 GGCTCGTGTGAGGGGGTT 61.637 66.667 0.00 0.00 42.79 4.11
1602 1639 4.593864 GATGAGAGGACGGCGGCC 62.594 72.222 28.04 28.04 0.00 6.13
1718 6852 3.509137 GACCCGTTCACCAGCGTCA 62.509 63.158 0.00 0.00 0.00 4.35
1743 6877 4.135153 CGGCTCCCGTCTGTCCAG 62.135 72.222 0.00 0.00 42.73 3.86
1806 6940 1.153549 GTGTGGAGGCAGGTCGATC 60.154 63.158 0.00 0.00 0.00 3.69
1821 6955 0.036010 CTCCTTGCCCTTCGATGTGT 60.036 55.000 0.00 0.00 0.00 3.72
1871 7005 1.068281 CAGTGCCGATGATACAGAGCT 59.932 52.381 0.00 0.00 0.00 4.09
1878 7012 3.056179 TGAGTTTGACAGTGCCGATGATA 60.056 43.478 0.00 0.00 0.00 2.15
1885 7019 1.668419 AGTGTGAGTTTGACAGTGCC 58.332 50.000 0.00 0.00 0.00 5.01
1965 7099 2.743636 TGTCCTGCTCTAACGGAAAG 57.256 50.000 0.00 0.00 0.00 2.62
2079 7213 2.895372 GGCAAATCGCGATCCGGT 60.895 61.111 23.92 3.11 43.84 5.28
2100 7234 3.922171 AGGCAGAAGGATAGGAACAAG 57.078 47.619 0.00 0.00 0.00 3.16
2109 7243 2.573462 TGCTGTTTCTAGGCAGAAGGAT 59.427 45.455 12.02 0.00 41.75 3.24
2152 7286 4.353383 ACAAACTCTCAGGGTAAAGGAC 57.647 45.455 0.00 0.00 0.00 3.85
2166 7300 4.757149 GCCATGATGTAGGGATACAAACTC 59.243 45.833 0.00 0.00 39.74 3.01
2285 7419 3.511540 TCTCCATGAGATATAAGGGTGCG 59.488 47.826 0.00 0.00 33.35 5.34
2338 7518 8.969260 TGACAATCTATAAATGTTGCTGATCT 57.031 30.769 0.00 0.00 0.00 2.75
2356 7536 5.712152 AAGTCATTTCCCACTTGACAATC 57.288 39.130 5.23 0.00 41.71 2.67
2469 7654 2.202236 AATCAGGGTCAGCATGCCGT 62.202 55.000 15.66 0.00 33.85 5.68
2580 7766 7.915930 ACATATTATGAGAGAAAGGGAGGATG 58.084 38.462 10.62 0.00 0.00 3.51
2581 7767 9.796242 ATACATATTATGAGAGAAAGGGAGGAT 57.204 33.333 10.62 0.00 0.00 3.24
2582 7768 9.621239 AATACATATTATGAGAGAAAGGGAGGA 57.379 33.333 10.62 0.00 0.00 3.71
2624 7810 9.713713 TGCCGCTTAACATTTACTATATGATAA 57.286 29.630 0.00 0.00 0.00 1.75
2625 7811 9.884636 ATGCCGCTTAACATTTACTATATGATA 57.115 29.630 0.00 0.00 0.00 2.15
2626 7812 8.668353 CATGCCGCTTAACATTTACTATATGAT 58.332 33.333 0.00 0.00 0.00 2.45
2627 7813 7.360861 GCATGCCGCTTAACATTTACTATATGA 60.361 37.037 6.36 0.00 37.77 2.15
2628 7814 6.742718 GCATGCCGCTTAACATTTACTATATG 59.257 38.462 6.36 0.00 37.77 1.78
2629 7815 6.842163 GCATGCCGCTTAACATTTACTATAT 58.158 36.000 6.36 0.00 37.77 0.86
2630 7816 6.236017 GCATGCCGCTTAACATTTACTATA 57.764 37.500 6.36 0.00 37.77 1.31
2631 7817 5.108385 GCATGCCGCTTAACATTTACTAT 57.892 39.130 6.36 0.00 37.77 2.12
2632 7818 4.545823 GCATGCCGCTTAACATTTACTA 57.454 40.909 6.36 0.00 37.77 1.82
2633 7819 3.420839 GCATGCCGCTTAACATTTACT 57.579 42.857 6.36 0.00 37.77 2.24
2648 7834 2.205022 TATAATCAGGGCCAGCATGC 57.795 50.000 10.51 10.51 31.97 4.06
2649 7835 5.687780 TCATATATAATCAGGGCCAGCATG 58.312 41.667 6.18 0.00 0.00 4.06
2650 7836 5.981494 TCATATATAATCAGGGCCAGCAT 57.019 39.130 6.18 0.00 0.00 3.79
2651 7837 5.777526 TTCATATATAATCAGGGCCAGCA 57.222 39.130 6.18 0.00 0.00 4.41
2652 7838 5.065218 CGTTTCATATATAATCAGGGCCAGC 59.935 44.000 6.18 0.00 0.00 4.85
2653 7839 6.173339 ACGTTTCATATATAATCAGGGCCAG 58.827 40.000 6.18 0.00 0.00 4.85
2654 7840 6.121776 ACGTTTCATATATAATCAGGGCCA 57.878 37.500 6.18 0.00 0.00 5.36
2655 7841 8.556213 TTTACGTTTCATATATAATCAGGGCC 57.444 34.615 0.00 0.00 0.00 5.80
2667 7853 9.734620 CATCCATGTCAATTTTACGTTTCATAT 57.265 29.630 0.00 0.00 0.00 1.78
2668 7854 8.951243 TCATCCATGTCAATTTTACGTTTCATA 58.049 29.630 0.00 0.00 0.00 2.15
2669 7855 7.825681 TCATCCATGTCAATTTTACGTTTCAT 58.174 30.769 0.00 0.00 0.00 2.57
2670 7856 7.208225 TCATCCATGTCAATTTTACGTTTCA 57.792 32.000 0.00 0.00 0.00 2.69
2671 7857 8.514136 TTTCATCCATGTCAATTTTACGTTTC 57.486 30.769 0.00 0.00 0.00 2.78
2672 7858 9.487790 AATTTCATCCATGTCAATTTTACGTTT 57.512 25.926 0.00 0.00 0.00 3.60
2698 7884 8.662141 GGAACACGAACTCTAGCAAATTAATTA 58.338 33.333 0.01 0.00 0.00 1.40
2699 7885 7.174253 TGGAACACGAACTCTAGCAAATTAATT 59.826 33.333 0.00 0.00 0.00 1.40
2700 7886 6.653320 TGGAACACGAACTCTAGCAAATTAAT 59.347 34.615 0.00 0.00 0.00 1.40
2701 7887 5.992829 TGGAACACGAACTCTAGCAAATTAA 59.007 36.000 0.00 0.00 0.00 1.40
2702 7888 5.543714 TGGAACACGAACTCTAGCAAATTA 58.456 37.500 0.00 0.00 0.00 1.40
2703 7889 4.385825 TGGAACACGAACTCTAGCAAATT 58.614 39.130 0.00 0.00 0.00 1.82
2704 7890 4.002906 TGGAACACGAACTCTAGCAAAT 57.997 40.909 0.00 0.00 0.00 2.32
2705 7891 3.462483 TGGAACACGAACTCTAGCAAA 57.538 42.857 0.00 0.00 0.00 3.68
2713 7899 8.529476 ACTTATAGAAGTAATGGAACACGAACT 58.471 33.333 0.00 0.00 43.20 3.01
2714 7900 8.699283 ACTTATAGAAGTAATGGAACACGAAC 57.301 34.615 0.00 0.00 43.20 3.95
2735 7921 8.971321 GGATGAATTTCTAATTACGCGTACTTA 58.029 33.333 20.44 21.81 0.00 2.24
2736 7922 7.709613 AGGATGAATTTCTAATTACGCGTACTT 59.290 33.333 20.44 21.87 0.00 2.24
2737 7923 7.208080 AGGATGAATTTCTAATTACGCGTACT 58.792 34.615 20.44 11.48 0.00 2.73
2738 7924 7.381678 AGAGGATGAATTTCTAATTACGCGTAC 59.618 37.037 20.44 3.77 0.00 3.67
2739 7925 7.431249 AGAGGATGAATTTCTAATTACGCGTA 58.569 34.615 16.41 16.41 0.00 4.42
2740 7926 6.281405 AGAGGATGAATTTCTAATTACGCGT 58.719 36.000 19.17 19.17 0.00 6.01
2741 7927 6.642950 AGAGAGGATGAATTTCTAATTACGCG 59.357 38.462 3.53 3.53 0.00 6.01
2742 7928 7.954788 AGAGAGGATGAATTTCTAATTACGC 57.045 36.000 0.00 0.00 0.00 4.42
2743 7929 9.119329 CGTAGAGAGGATGAATTTCTAATTACG 57.881 37.037 0.00 0.00 0.00 3.18
2747 7933 9.921637 GAATCGTAGAGAGGATGAATTTCTAAT 57.078 33.333 0.00 0.00 43.63 1.73
2748 7934 8.076781 CGAATCGTAGAGAGGATGAATTTCTAA 58.923 37.037 0.00 0.00 43.63 2.10
2749 7935 7.585867 CGAATCGTAGAGAGGATGAATTTCTA 58.414 38.462 0.00 0.00 43.63 2.10
2750 7936 6.442952 CGAATCGTAGAGAGGATGAATTTCT 58.557 40.000 0.00 0.00 43.63 2.52
2751 7937 5.117897 GCGAATCGTAGAGAGGATGAATTTC 59.882 44.000 4.07 0.00 43.63 2.17
2752 7938 4.985409 GCGAATCGTAGAGAGGATGAATTT 59.015 41.667 4.07 0.00 43.63 1.82
2753 7939 4.038042 TGCGAATCGTAGAGAGGATGAATT 59.962 41.667 4.07 0.00 43.63 2.17
2754 7940 3.570125 TGCGAATCGTAGAGAGGATGAAT 59.430 43.478 4.07 0.00 43.63 2.57
2755 7941 2.949644 TGCGAATCGTAGAGAGGATGAA 59.050 45.455 4.07 0.00 43.63 2.57
2756 7942 2.550180 CTGCGAATCGTAGAGAGGATGA 59.450 50.000 15.47 0.00 43.63 2.92
2773 7959 2.868583 CAGTCTCAATATCCCAACTGCG 59.131 50.000 0.00 0.00 0.00 5.18
2804 7990 2.437413 TGTTATGCCCGCATGTACAAA 58.563 42.857 12.42 0.00 37.82 2.83
2891 8100 7.118390 GCAATCCATATGACACCACTAGTTATC 59.882 40.741 3.65 0.00 0.00 1.75
2902 8111 4.454678 TCTTCTGGCAATCCATATGACAC 58.545 43.478 3.65 0.00 42.51 3.67
2954 8163 5.572896 GGATAAACTGGTTTTGCAGAATTCG 59.427 40.000 4.01 0.00 34.23 3.34
2972 8181 3.201930 TGCAATCAGCTACCCTGGATAAA 59.798 43.478 0.00 0.00 45.94 1.40
3050 8269 0.449993 CGTATGAATGATGCAGCGCG 60.450 55.000 0.00 0.00 0.00 6.86
3227 8446 2.254152 TCCACTTCTAGCCCAGTCAT 57.746 50.000 0.00 0.00 0.00 3.06
3255 8474 5.815233 AGTCTAGCATGTTGTAGCCATAT 57.185 39.130 0.00 0.00 0.00 1.78
3337 8556 4.290722 ACTTCATCTCAGATCTTTGGGGTT 59.709 41.667 0.00 0.00 0.00 4.11
3338 8557 3.848975 ACTTCATCTCAGATCTTTGGGGT 59.151 43.478 0.00 0.00 0.00 4.95
3339 8558 4.500499 ACTTCATCTCAGATCTTTGGGG 57.500 45.455 0.00 0.00 0.00 4.96
3340 8559 6.017275 GCATAACTTCATCTCAGATCTTTGGG 60.017 42.308 0.00 0.00 0.00 4.12
3464 8856 2.823154 CCCAGATCTTTGCGGGTTAAAA 59.177 45.455 7.56 0.00 33.67 1.52
3507 9027 0.249955 TCATGCAACTCCGATGCTCA 59.750 50.000 0.00 0.00 44.14 4.26
3513 9033 0.684535 TCCAGTTCATGCAACTCCGA 59.315 50.000 0.00 4.76 44.14 4.55
3514 9034 1.522668 TTCCAGTTCATGCAACTCCG 58.477 50.000 0.00 3.02 44.14 4.63
3557 9383 6.380190 ACGCTACAAATATCTATTCCTCGAC 58.620 40.000 0.00 0.00 0.00 4.20
3691 9520 1.744320 AAAGGCGGTTTGGTTGGCTC 61.744 55.000 0.00 0.00 37.56 4.70
3838 9673 6.879400 AGAAGCAAAGTAGATCGATAAAGGT 58.121 36.000 0.00 0.00 0.00 3.50
3844 9679 6.314896 CAGGAAAAGAAGCAAAGTAGATCGAT 59.685 38.462 0.00 0.00 0.00 3.59
3845 9680 5.639506 CAGGAAAAGAAGCAAAGTAGATCGA 59.360 40.000 0.00 0.00 0.00 3.59
3846 9681 5.672321 GCAGGAAAAGAAGCAAAGTAGATCG 60.672 44.000 0.00 0.00 0.00 3.69
3847 9682 5.392487 GGCAGGAAAAGAAGCAAAGTAGATC 60.392 44.000 0.00 0.00 0.00 2.75
3878 9713 5.061311 CGTACAAAGATCGACGTGGTTAAAT 59.939 40.000 0.00 0.00 0.00 1.40
3901 9736 2.125912 CAGTGACTTCTCGGGCCG 60.126 66.667 22.51 22.51 0.00 6.13
3952 9949 4.378459 GGACATGCACAAAGTACTTACTGC 60.378 45.833 22.19 22.19 36.50 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.