Multiple sequence alignment - TraesCS1D01G207100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G207100 chr1D 100.000 3193 0 0 1 3193 293523056 293526248 0.000000e+00 5897.0
1 TraesCS1D01G207100 chr1D 85.588 1360 115 46 856 2197 293458644 293459940 0.000000e+00 1351.0
2 TraesCS1D01G207100 chr1D 80.093 216 29 4 2975 3190 228798567 228798366 7.140000e-32 148.0
3 TraesCS1D01G207100 chr1A 92.546 1905 84 22 433 2298 365506917 365508802 0.000000e+00 2678.0
4 TraesCS1D01G207100 chr1A 85.830 1355 112 39 856 2197 365492146 365493433 0.000000e+00 1365.0
5 TraesCS1D01G207100 chr1A 85.845 219 14 3 221 437 365502740 365502943 1.930000e-52 217.0
6 TraesCS1D01G207100 chr1B 93.615 1754 82 14 561 2297 394637192 394638932 0.000000e+00 2591.0
7 TraesCS1D01G207100 chr1B 87.705 610 64 8 1697 2298 394508569 394509175 0.000000e+00 701.0
8 TraesCS1D01G207100 chr1B 82.206 798 70 33 856 1644 394507812 394508546 3.500000e-174 621.0
9 TraesCS1D01G207100 chr1B 83.628 226 21 8 2970 3193 12999719 12999930 6.990000e-47 198.0
10 TraesCS1D01G207100 chr1B 75.202 371 57 25 2460 2828 617640071 617640408 3.320000e-30 143.0
11 TraesCS1D01G207100 chr5D 79.739 844 111 37 859 1675 472802661 472803471 1.000000e-154 556.0
12 TraesCS1D01G207100 chr5D 83.906 466 69 4 1762 2222 472803506 472803970 1.050000e-119 440.0
13 TraesCS1D01G207100 chr5B 83.002 553 66 11 996 1543 580165042 580165571 2.880000e-130 475.0
14 TraesCS1D01G207100 chr5B 85.652 460 42 16 2450 2909 492400952 492401387 2.240000e-126 462.0
15 TraesCS1D01G207100 chr5B 84.000 450 66 4 1778 2222 580165870 580166318 8.190000e-116 427.0
16 TraesCS1D01G207100 chr5B 91.497 294 24 1 2900 3193 492401407 492401699 1.380000e-108 403.0
17 TraesCS1D01G207100 chr5B 90.136 294 28 1 2900 3193 675077148 675076856 6.460000e-102 381.0
18 TraesCS1D01G207100 chr5B 82.500 440 67 5 1792 2222 580174853 580175291 8.360000e-101 377.0
19 TraesCS1D01G207100 chr5B 100.000 36 0 0 2463 2498 571197906 571197941 2.060000e-07 67.6
20 TraesCS1D01G207100 chr6A 82.627 472 54 9 2746 3192 520535405 520535873 2.990000e-105 392.0
21 TraesCS1D01G207100 chr7A 85.714 294 38 4 2901 3192 548998391 548998682 1.110000e-79 307.0
22 TraesCS1D01G207100 chr7A 91.364 220 18 1 1 219 442900006 442900225 1.860000e-77 300.0
23 TraesCS1D01G207100 chr7A 88.532 218 24 1 2 219 465708958 465709174 2.440000e-66 263.0
24 TraesCS1D01G207100 chr7A 84.828 145 18 4 1145 1287 722767986 722768128 3.320000e-30 143.0
25 TraesCS1D01G207100 chr2A 92.202 218 15 2 1 218 642115414 642115199 1.110000e-79 307.0
26 TraesCS1D01G207100 chr2A 88.208 212 22 3 3 212 657274209 657273999 1.900000e-62 250.0
27 TraesCS1D01G207100 chr2A 87.442 215 25 2 3 217 435227521 435227733 2.460000e-61 246.0
28 TraesCS1D01G207100 chr2A 76.584 363 77 7 1827 2185 761541633 761541275 3.250000e-45 193.0
29 TraesCS1D01G207100 chr3A 90.830 229 18 2 1 229 106736057 106735832 1.440000e-78 303.0
30 TraesCS1D01G207100 chr6B 83.041 342 46 7 2561 2895 261533178 261532842 1.860000e-77 300.0
31 TraesCS1D01G207100 chr6B 79.443 467 61 17 2451 2909 576439483 576439922 6.700000e-77 298.0
32 TraesCS1D01G207100 chr6B 88.426 216 22 2 4 219 366296035 366295823 1.140000e-64 257.0
33 TraesCS1D01G207100 chr6B 86.667 225 23 3 1 219 229461073 229460850 3.180000e-60 243.0
34 TraesCS1D01G207100 chr6B 84.444 225 20 7 2969 3192 576440082 576440292 1.160000e-49 207.0
35 TraesCS1D01G207100 chr7B 87.500 216 26 1 4 219 307974114 307973900 6.840000e-62 248.0
36 TraesCS1D01G207100 chr7B 81.081 222 27 5 2969 3190 440351132 440351338 2.550000e-36 163.0
37 TraesCS1D01G207100 chr7B 86.719 128 11 2 1160 1287 636507436 636507557 1.540000e-28 137.0
38 TraesCS1D01G207100 chr4D 91.736 121 8 2 3074 3193 108831227 108831108 1.970000e-37 167.0
39 TraesCS1D01G207100 chr5A 85.593 118 16 1 3073 3190 567546313 567546429 4.330000e-24 122.0
40 TraesCS1D01G207100 chr3B 79.882 169 28 6 2460 2628 824158240 824158402 5.600000e-23 119.0
41 TraesCS1D01G207100 chr2B 100.000 36 0 0 2460 2495 16331664 16331629 2.060000e-07 67.6
42 TraesCS1D01G207100 chr7D 82.051 78 11 3 2460 2536 36054423 36054498 2.660000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G207100 chr1D 293523056 293526248 3192 False 5897.0 5897 100.0000 1 3193 1 chr1D.!!$F2 3192
1 TraesCS1D01G207100 chr1D 293458644 293459940 1296 False 1351.0 1351 85.5880 856 2197 1 chr1D.!!$F1 1341
2 TraesCS1D01G207100 chr1A 365502740 365508802 6062 False 1447.5 2678 89.1955 221 2298 2 chr1A.!!$F2 2077
3 TraesCS1D01G207100 chr1A 365492146 365493433 1287 False 1365.0 1365 85.8300 856 2197 1 chr1A.!!$F1 1341
4 TraesCS1D01G207100 chr1B 394637192 394638932 1740 False 2591.0 2591 93.6150 561 2297 1 chr1B.!!$F2 1736
5 TraesCS1D01G207100 chr1B 394507812 394509175 1363 False 661.0 701 84.9555 856 2298 2 chr1B.!!$F4 1442
6 TraesCS1D01G207100 chr5D 472802661 472803970 1309 False 498.0 556 81.8225 859 2222 2 chr5D.!!$F1 1363
7 TraesCS1D01G207100 chr5B 580165042 580166318 1276 False 451.0 475 83.5010 996 2222 2 chr5B.!!$F4 1226
8 TraesCS1D01G207100 chr5B 492400952 492401699 747 False 432.5 462 88.5745 2450 3193 2 chr5B.!!$F3 743
9 TraesCS1D01G207100 chr6B 576439483 576440292 809 False 252.5 298 81.9435 2451 3192 2 chr6B.!!$F1 741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.037419 TGCGCACATGAGTAGCTTCA 60.037 50.0 5.66 0.0 33.44 3.02 F
141 142 0.320697 GCAACTAACGACAGAGGGGT 59.679 55.0 0.00 0.0 0.00 4.95 F
963 4980 0.744874 GCGCTATACCACACAGGAGA 59.255 55.0 0.00 0.0 41.22 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1153 5179 1.137404 CGTACGTGTAGAACCCCCG 59.863 63.158 7.22 0.0 0.0 5.73 R
1803 6031 1.647545 CGCCTGGTCAATCGCACAAT 61.648 55.000 0.00 0.0 0.0 2.71 R
2581 6813 0.027586 GTGCGCACGACTGTCTTTTT 59.972 50.000 26.77 0.0 0.0 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.177531 GCACCTTGCGCACATGAG 59.822 61.111 11.12 4.29 31.71 2.90
19 20 2.620112 GCACCTTGCGCACATGAGT 61.620 57.895 11.12 0.00 31.71 3.41
20 21 1.298157 GCACCTTGCGCACATGAGTA 61.298 55.000 11.12 0.00 31.71 2.59
21 22 0.723414 CACCTTGCGCACATGAGTAG 59.277 55.000 11.12 2.00 0.00 2.57
22 23 1.021390 ACCTTGCGCACATGAGTAGC 61.021 55.000 11.12 2.61 0.00 3.58
23 24 0.742281 CCTTGCGCACATGAGTAGCT 60.742 55.000 11.12 0.00 33.44 3.32
24 25 1.081892 CTTGCGCACATGAGTAGCTT 58.918 50.000 11.12 0.00 33.44 3.74
25 26 1.061711 CTTGCGCACATGAGTAGCTTC 59.938 52.381 11.12 0.00 33.44 3.86
26 27 0.037419 TGCGCACATGAGTAGCTTCA 60.037 50.000 5.66 0.00 33.44 3.02
27 28 1.078709 GCGCACATGAGTAGCTTCAA 58.921 50.000 0.30 0.00 0.00 2.69
28 29 1.667724 GCGCACATGAGTAGCTTCAAT 59.332 47.619 0.30 0.00 0.00 2.57
29 30 2.286067 GCGCACATGAGTAGCTTCAATC 60.286 50.000 0.30 0.00 0.00 2.67
30 31 2.286294 CGCACATGAGTAGCTTCAATCC 59.714 50.000 0.00 0.00 0.00 3.01
31 32 2.615912 GCACATGAGTAGCTTCAATCCC 59.384 50.000 0.00 0.00 0.00 3.85
32 33 3.877559 CACATGAGTAGCTTCAATCCCA 58.122 45.455 0.00 0.00 0.00 4.37
33 34 3.624861 CACATGAGTAGCTTCAATCCCAC 59.375 47.826 0.00 0.00 0.00 4.61
34 35 3.264193 ACATGAGTAGCTTCAATCCCACA 59.736 43.478 0.00 0.00 0.00 4.17
35 36 4.263462 ACATGAGTAGCTTCAATCCCACAA 60.263 41.667 0.00 0.00 0.00 3.33
36 37 4.365514 TGAGTAGCTTCAATCCCACAAA 57.634 40.909 0.00 0.00 0.00 2.83
37 38 4.724399 TGAGTAGCTTCAATCCCACAAAA 58.276 39.130 0.00 0.00 0.00 2.44
38 39 5.324409 TGAGTAGCTTCAATCCCACAAAAT 58.676 37.500 0.00 0.00 0.00 1.82
39 40 5.774690 TGAGTAGCTTCAATCCCACAAAATT 59.225 36.000 0.00 0.00 0.00 1.82
40 41 6.267471 TGAGTAGCTTCAATCCCACAAAATTT 59.733 34.615 0.00 0.00 0.00 1.82
41 42 7.066307 AGTAGCTTCAATCCCACAAAATTTT 57.934 32.000 0.00 0.00 0.00 1.82
42 43 8.189119 AGTAGCTTCAATCCCACAAAATTTTA 57.811 30.769 2.44 0.00 0.00 1.52
43 44 8.306761 AGTAGCTTCAATCCCACAAAATTTTAG 58.693 33.333 2.44 1.33 0.00 1.85
44 45 7.301868 AGCTTCAATCCCACAAAATTTTAGA 57.698 32.000 2.44 0.00 0.00 2.10
45 46 7.910584 AGCTTCAATCCCACAAAATTTTAGAT 58.089 30.769 2.44 1.70 0.00 1.98
46 47 8.377799 AGCTTCAATCCCACAAAATTTTAGATT 58.622 29.630 2.44 7.32 0.00 2.40
47 48 9.002600 GCTTCAATCCCACAAAATTTTAGATTT 57.997 29.630 2.44 0.00 0.00 2.17
80 81 5.534207 TTTTTCATGATGGTCAAAGCTGT 57.466 34.783 0.00 0.00 0.00 4.40
81 82 5.534207 TTTTCATGATGGTCAAAGCTGTT 57.466 34.783 0.00 0.00 0.00 3.16
82 83 5.534207 TTTCATGATGGTCAAAGCTGTTT 57.466 34.783 0.00 0.00 0.00 2.83
83 84 4.508461 TCATGATGGTCAAAGCTGTTTG 57.492 40.909 0.00 0.00 43.96 2.93
91 92 1.939934 TCAAAGCTGTTTGACCAGACG 59.060 47.619 0.00 0.00 45.82 4.18
92 93 1.002468 CAAAGCTGTTTGACCAGACGG 60.002 52.381 0.00 0.00 45.22 4.79
99 100 4.891220 CTGTTTGACCAGACGGTAACAGC 61.891 52.174 12.12 0.00 46.93 4.40
101 102 2.048503 ACCAGACGGTAACAGCGC 60.049 61.111 0.00 0.00 46.71 5.92
102 103 2.048597 CCAGACGGTAACAGCGCA 60.049 61.111 11.47 0.00 43.79 6.09
103 104 2.094659 CCAGACGGTAACAGCGCAG 61.095 63.158 11.47 3.33 43.79 5.18
104 105 1.080772 CAGACGGTAACAGCGCAGA 60.081 57.895 11.47 0.00 43.79 4.26
105 106 0.666274 CAGACGGTAACAGCGCAGAA 60.666 55.000 11.47 0.00 43.79 3.02
106 107 0.388649 AGACGGTAACAGCGCAGAAG 60.389 55.000 11.47 0.00 43.79 2.85
107 108 1.352156 GACGGTAACAGCGCAGAAGG 61.352 60.000 11.47 0.00 43.79 3.46
108 109 2.100631 CGGTAACAGCGCAGAAGGG 61.101 63.158 11.47 0.00 30.39 3.95
120 121 4.739046 CGCAGAAGGGCATTTCTATAAG 57.261 45.455 3.58 0.00 35.70 1.73
121 122 3.499918 CGCAGAAGGGCATTTCTATAAGG 59.500 47.826 3.58 0.00 35.70 2.69
122 123 3.823304 GCAGAAGGGCATTTCTATAAGGG 59.177 47.826 3.58 0.00 35.70 3.95
123 124 3.823304 CAGAAGGGCATTTCTATAAGGGC 59.177 47.826 3.58 0.00 35.70 5.19
124 125 3.463329 AGAAGGGCATTTCTATAAGGGCA 59.537 43.478 2.11 0.00 35.70 5.36
125 126 3.971468 AGGGCATTTCTATAAGGGCAA 57.029 42.857 0.00 0.00 0.00 4.52
126 127 3.566351 AGGGCATTTCTATAAGGGCAAC 58.434 45.455 0.00 0.00 0.00 4.17
127 128 3.205282 AGGGCATTTCTATAAGGGCAACT 59.795 43.478 0.00 0.00 0.00 3.16
128 129 4.415512 AGGGCATTTCTATAAGGGCAACTA 59.584 41.667 0.00 0.00 0.00 2.24
129 130 5.103686 AGGGCATTTCTATAAGGGCAACTAA 60.104 40.000 0.00 0.00 0.00 2.24
130 131 5.009710 GGGCATTTCTATAAGGGCAACTAAC 59.990 44.000 0.00 0.00 0.00 2.34
131 132 5.277828 GGCATTTCTATAAGGGCAACTAACG 60.278 44.000 0.00 0.00 0.00 3.18
132 133 5.526111 GCATTTCTATAAGGGCAACTAACGA 59.474 40.000 0.00 0.00 0.00 3.85
133 134 6.511282 GCATTTCTATAAGGGCAACTAACGAC 60.511 42.308 0.00 0.00 0.00 4.34
134 135 5.664294 TTCTATAAGGGCAACTAACGACA 57.336 39.130 0.00 0.00 0.00 4.35
135 136 5.258456 TCTATAAGGGCAACTAACGACAG 57.742 43.478 0.00 0.00 0.00 3.51
136 137 4.951715 TCTATAAGGGCAACTAACGACAGA 59.048 41.667 0.00 0.00 0.00 3.41
137 138 2.457366 AAGGGCAACTAACGACAGAG 57.543 50.000 0.00 0.00 0.00 3.35
138 139 0.608640 AGGGCAACTAACGACAGAGG 59.391 55.000 0.00 0.00 0.00 3.69
139 140 0.391263 GGGCAACTAACGACAGAGGG 60.391 60.000 0.00 0.00 0.00 4.30
140 141 0.391263 GGCAACTAACGACAGAGGGG 60.391 60.000 0.00 0.00 0.00 4.79
141 142 0.320697 GCAACTAACGACAGAGGGGT 59.679 55.000 0.00 0.00 0.00 4.95
142 143 1.547372 GCAACTAACGACAGAGGGGTA 59.453 52.381 0.00 0.00 0.00 3.69
143 144 2.028748 GCAACTAACGACAGAGGGGTAA 60.029 50.000 0.00 0.00 0.00 2.85
144 145 3.555586 GCAACTAACGACAGAGGGGTAAA 60.556 47.826 0.00 0.00 0.00 2.01
145 146 4.828829 CAACTAACGACAGAGGGGTAAAT 58.171 43.478 0.00 0.00 0.00 1.40
146 147 5.243207 CAACTAACGACAGAGGGGTAAATT 58.757 41.667 0.00 0.00 0.00 1.82
147 148 5.494390 ACTAACGACAGAGGGGTAAATTT 57.506 39.130 0.00 0.00 0.00 1.82
148 149 5.243207 ACTAACGACAGAGGGGTAAATTTG 58.757 41.667 0.00 0.00 0.00 2.32
149 150 4.360951 AACGACAGAGGGGTAAATTTGA 57.639 40.909 0.00 0.00 0.00 2.69
150 151 3.939066 ACGACAGAGGGGTAAATTTGAG 58.061 45.455 0.00 0.00 0.00 3.02
151 152 2.678336 CGACAGAGGGGTAAATTTGAGC 59.322 50.000 0.00 0.00 0.00 4.26
152 153 3.686016 GACAGAGGGGTAAATTTGAGCA 58.314 45.455 0.00 0.00 0.00 4.26
153 154 3.421844 ACAGAGGGGTAAATTTGAGCAC 58.578 45.455 0.00 0.00 0.00 4.40
154 155 3.181434 ACAGAGGGGTAAATTTGAGCACA 60.181 43.478 0.00 0.00 0.00 4.57
155 156 3.191371 CAGAGGGGTAAATTTGAGCACAC 59.809 47.826 0.00 0.00 0.00 3.82
156 157 3.153919 GAGGGGTAAATTTGAGCACACA 58.846 45.455 0.00 0.00 0.00 3.72
157 158 3.763897 GAGGGGTAAATTTGAGCACACAT 59.236 43.478 0.00 0.00 0.00 3.21
158 159 4.159557 AGGGGTAAATTTGAGCACACATT 58.840 39.130 0.00 0.00 0.00 2.71
159 160 4.021192 AGGGGTAAATTTGAGCACACATTG 60.021 41.667 0.00 0.00 0.00 2.82
160 161 4.021544 GGGGTAAATTTGAGCACACATTGA 60.022 41.667 0.00 0.00 0.00 2.57
161 162 5.510520 GGGGTAAATTTGAGCACACATTGAA 60.511 40.000 0.00 0.00 0.00 2.69
162 163 5.988561 GGGTAAATTTGAGCACACATTGAAA 59.011 36.000 0.00 0.00 0.00 2.69
163 164 6.650390 GGGTAAATTTGAGCACACATTGAAAT 59.350 34.615 0.00 0.00 0.00 2.17
164 165 7.173047 GGGTAAATTTGAGCACACATTGAAATT 59.827 33.333 0.00 0.00 0.00 1.82
165 166 9.202273 GGTAAATTTGAGCACACATTGAAATTA 57.798 29.630 0.00 0.00 0.00 1.40
167 168 7.894376 AATTTGAGCACACATTGAAATTAGG 57.106 32.000 0.00 0.00 0.00 2.69
168 169 5.389859 TTGAGCACACATTGAAATTAGGG 57.610 39.130 0.00 0.00 0.00 3.53
169 170 3.763360 TGAGCACACATTGAAATTAGGGG 59.237 43.478 0.00 0.00 0.00 4.79
170 171 2.497273 AGCACACATTGAAATTAGGGGC 59.503 45.455 0.00 0.00 0.00 5.80
171 172 2.233431 GCACACATTGAAATTAGGGGCA 59.767 45.455 0.00 0.00 0.00 5.36
172 173 3.848726 CACACATTGAAATTAGGGGCAC 58.151 45.455 0.00 0.00 0.00 5.01
173 174 3.257873 CACACATTGAAATTAGGGGCACA 59.742 43.478 0.00 0.00 0.00 4.57
174 175 4.081531 CACACATTGAAATTAGGGGCACAT 60.082 41.667 0.00 0.00 0.00 3.21
175 176 4.531732 ACACATTGAAATTAGGGGCACATT 59.468 37.500 0.00 0.00 0.00 2.71
176 177 5.012975 ACACATTGAAATTAGGGGCACATTT 59.987 36.000 0.00 0.00 0.00 2.32
177 178 5.352016 CACATTGAAATTAGGGGCACATTTG 59.648 40.000 0.00 0.00 0.00 2.32
178 179 5.248020 ACATTGAAATTAGGGGCACATTTGA 59.752 36.000 0.00 0.00 0.00 2.69
179 180 5.815233 TTGAAATTAGGGGCACATTTGAA 57.185 34.783 0.00 0.00 0.00 2.69
180 181 6.371595 TTGAAATTAGGGGCACATTTGAAT 57.628 33.333 0.00 0.00 0.00 2.57
181 182 7.487822 TTGAAATTAGGGGCACATTTGAATA 57.512 32.000 0.00 0.00 0.00 1.75
182 183 7.111247 TGAAATTAGGGGCACATTTGAATAG 57.889 36.000 0.00 0.00 0.00 1.73
183 184 6.667414 TGAAATTAGGGGCACATTTGAATAGT 59.333 34.615 0.00 0.00 0.00 2.12
184 185 6.469782 AATTAGGGGCACATTTGAATAGTG 57.530 37.500 0.00 0.00 36.39 2.74
185 186 3.737559 AGGGGCACATTTGAATAGTGA 57.262 42.857 0.00 0.00 35.33 3.41
186 187 3.624777 AGGGGCACATTTGAATAGTGAG 58.375 45.455 0.00 0.00 35.33 3.51
187 188 3.010584 AGGGGCACATTTGAATAGTGAGT 59.989 43.478 0.00 0.00 35.33 3.41
188 189 3.763897 GGGGCACATTTGAATAGTGAGTT 59.236 43.478 0.00 0.00 35.33 3.01
189 190 4.220602 GGGGCACATTTGAATAGTGAGTTT 59.779 41.667 0.00 0.00 35.33 2.66
190 191 5.402398 GGGCACATTTGAATAGTGAGTTTC 58.598 41.667 0.00 0.00 35.33 2.78
191 192 5.048083 GGGCACATTTGAATAGTGAGTTTCA 60.048 40.000 0.00 0.00 35.33 2.69
192 193 6.088824 GGCACATTTGAATAGTGAGTTTCAG 58.911 40.000 0.00 0.00 35.33 3.02
193 194 6.294176 GGCACATTTGAATAGTGAGTTTCAGT 60.294 38.462 0.00 0.00 35.33 3.41
194 195 7.141363 GCACATTTGAATAGTGAGTTTCAGTT 58.859 34.615 0.00 0.00 35.33 3.16
195 196 8.289618 GCACATTTGAATAGTGAGTTTCAGTTA 58.710 33.333 0.00 0.00 35.33 2.24
196 197 9.817365 CACATTTGAATAGTGAGTTTCAGTTAG 57.183 33.333 0.00 0.00 35.33 2.34
197 198 9.003658 ACATTTGAATAGTGAGTTTCAGTTAGG 57.996 33.333 0.00 0.00 33.68 2.69
198 199 7.979444 TTTGAATAGTGAGTTTCAGTTAGGG 57.021 36.000 0.00 0.00 33.68 3.53
199 200 6.049955 TGAATAGTGAGTTTCAGTTAGGGG 57.950 41.667 0.00 0.00 31.49 4.79
200 201 2.861147 AGTGAGTTTCAGTTAGGGGC 57.139 50.000 0.00 0.00 0.00 5.80
201 202 2.054799 AGTGAGTTTCAGTTAGGGGCA 58.945 47.619 0.00 0.00 0.00 5.36
202 203 2.039084 AGTGAGTTTCAGTTAGGGGCAG 59.961 50.000 0.00 0.00 0.00 4.85
203 204 2.038557 GTGAGTTTCAGTTAGGGGCAGA 59.961 50.000 0.00 0.00 0.00 4.26
204 205 2.708861 TGAGTTTCAGTTAGGGGCAGAA 59.291 45.455 0.00 0.00 0.00 3.02
205 206 3.137544 TGAGTTTCAGTTAGGGGCAGAAA 59.862 43.478 0.00 0.00 0.00 2.52
206 207 4.202567 TGAGTTTCAGTTAGGGGCAGAAAT 60.203 41.667 0.00 0.00 31.73 2.17
207 208 4.082125 AGTTTCAGTTAGGGGCAGAAATG 58.918 43.478 0.00 0.00 31.73 2.32
208 209 4.079253 GTTTCAGTTAGGGGCAGAAATGA 58.921 43.478 0.00 0.00 31.73 2.57
209 210 4.380843 TTCAGTTAGGGGCAGAAATGAA 57.619 40.909 4.67 4.67 37.32 2.57
210 211 4.380843 TCAGTTAGGGGCAGAAATGAAA 57.619 40.909 0.00 0.00 27.58 2.69
211 212 4.934356 TCAGTTAGGGGCAGAAATGAAAT 58.066 39.130 0.00 0.00 27.58 2.17
212 213 5.332743 TCAGTTAGGGGCAGAAATGAAATT 58.667 37.500 0.00 0.00 38.98 1.82
213 214 5.185635 TCAGTTAGGGGCAGAAATGAAATTG 59.814 40.000 0.00 0.00 36.10 2.32
214 215 5.047092 CAGTTAGGGGCAGAAATGAAATTGT 60.047 40.000 0.00 0.00 36.10 2.71
215 216 5.185828 AGTTAGGGGCAGAAATGAAATTGTC 59.814 40.000 0.00 0.00 36.10 3.18
216 217 2.833943 AGGGGCAGAAATGAAATTGTCC 59.166 45.455 0.00 0.00 36.10 4.02
217 218 3.251479 GGGCAGAAATGAAATTGTCCC 57.749 47.619 0.00 0.00 36.10 4.46
218 219 2.833943 GGGCAGAAATGAAATTGTCCCT 59.166 45.455 0.00 0.00 36.10 4.20
219 220 3.118992 GGGCAGAAATGAAATTGTCCCTC 60.119 47.826 0.00 0.00 36.10 4.30
230 231 6.386654 TGAAATTGTCCCTCGAAAATTAAGC 58.613 36.000 0.00 0.00 35.26 3.09
231 232 4.983671 ATTGTCCCTCGAAAATTAAGCC 57.016 40.909 0.00 0.00 0.00 4.35
232 233 2.718563 TGTCCCTCGAAAATTAAGCCC 58.281 47.619 0.00 0.00 0.00 5.19
245 246 7.095982 CGAAAATTAAGCCCGTGTGTTTTAATT 60.096 33.333 0.00 0.00 36.19 1.40
247 248 8.439993 AAATTAAGCCCGTGTGTTTTAATTTT 57.560 26.923 7.19 0.00 39.21 1.82
249 250 3.985008 AGCCCGTGTGTTTTAATTTTCC 58.015 40.909 0.00 0.00 0.00 3.13
251 252 3.655486 CCCGTGTGTTTTAATTTTCCCC 58.345 45.455 0.00 0.00 0.00 4.81
305 306 6.489127 TTCATAACAACCAAATACTCACCG 57.511 37.500 0.00 0.00 0.00 4.94
460 4441 4.853924 AAATTTGATGGCTTGAGTTCGT 57.146 36.364 0.00 0.00 0.00 3.85
506 4487 2.006772 CAGCGTATTTCCACGAGCC 58.993 57.895 0.00 0.00 44.69 4.70
511 4492 1.153449 TATTTCCACGAGCCAGCCG 60.153 57.895 0.00 0.00 0.00 5.52
550 4531 2.289565 CTTATTTTCAGCCTCCCGTCC 58.710 52.381 0.00 0.00 0.00 4.79
584 4567 0.918258 TGCAGGCCAGAACCATATGA 59.082 50.000 5.01 0.00 0.00 2.15
674 4659 2.578713 CCGCGCGTATCGACAACT 60.579 61.111 29.95 0.00 41.67 3.16
963 4980 0.744874 GCGCTATACCACACAGGAGA 59.255 55.000 0.00 0.00 41.22 3.71
1327 5373 4.499183 TGTTGATTTCGGTTGCTGTTTTT 58.501 34.783 0.00 0.00 0.00 1.94
1565 5759 6.761099 TTATGGCCTATAAGACGATCTCTC 57.239 41.667 3.32 0.00 0.00 3.20
1576 5785 4.942852 AGACGATCTCTCAAACATCATCC 58.057 43.478 0.00 0.00 0.00 3.51
1577 5786 4.403752 AGACGATCTCTCAAACATCATCCA 59.596 41.667 0.00 0.00 0.00 3.41
1578 5787 4.437239 ACGATCTCTCAAACATCATCCAC 58.563 43.478 0.00 0.00 0.00 4.02
1579 5788 4.081476 ACGATCTCTCAAACATCATCCACA 60.081 41.667 0.00 0.00 0.00 4.17
1580 5789 5.055144 CGATCTCTCAAACATCATCCACAT 58.945 41.667 0.00 0.00 0.00 3.21
1581 5790 5.050295 CGATCTCTCAAACATCATCCACATG 60.050 44.000 0.00 0.00 0.00 3.21
1582 5791 5.425196 TCTCTCAAACATCATCCACATGA 57.575 39.130 0.00 0.00 43.45 3.07
1583 5792 5.807909 TCTCTCAAACATCATCCACATGAA 58.192 37.500 0.00 0.00 42.53 2.57
1584 5793 6.240145 TCTCTCAAACATCATCCACATGAAA 58.760 36.000 0.00 0.00 42.53 2.69
1585 5794 6.716173 TCTCTCAAACATCATCCACATGAAAA 59.284 34.615 0.00 0.00 42.53 2.29
1586 5795 7.231115 TCTCTCAAACATCATCCACATGAAAAA 59.769 33.333 0.00 0.00 42.53 1.94
1701 5917 1.883084 GCCGCTAATCACGACCTGG 60.883 63.158 0.00 0.00 0.00 4.45
1707 5923 2.893637 CTAATCACGACCTGGTCCAAG 58.106 52.381 20.68 9.72 0.00 3.61
1738 5955 9.622366 CTTTCGTTTTCGCGTGTAATAATTATA 57.378 29.630 5.77 0.00 43.73 0.98
1853 6085 3.854669 CTCGCCGGGAGAGCCATT 61.855 66.667 14.95 0.00 46.23 3.16
2298 6530 6.256975 CGTCGTGGAATAAAGGATTCAACATA 59.743 38.462 5.82 0.00 45.15 2.29
2299 6531 7.042051 CGTCGTGGAATAAAGGATTCAACATAT 60.042 37.037 5.82 0.00 45.15 1.78
2300 6532 9.268268 GTCGTGGAATAAAGGATTCAACATATA 57.732 33.333 5.82 0.00 45.15 0.86
2329 6561 9.159254 TGGAATCAGATTATATAACAGACCAGT 57.841 33.333 0.00 0.00 0.00 4.00
2332 6564 9.784531 AATCAGATTATATAACAGACCAGTTGG 57.215 33.333 0.00 0.00 42.17 3.77
2344 6576 2.479566 CCAGTTGGTGTGATAGCTGT 57.520 50.000 0.00 0.00 0.00 4.40
2345 6577 2.783135 CCAGTTGGTGTGATAGCTGTT 58.217 47.619 0.00 0.00 0.00 3.16
2346 6578 2.485426 CCAGTTGGTGTGATAGCTGTTG 59.515 50.000 0.00 0.00 0.00 3.33
2347 6579 3.141398 CAGTTGGTGTGATAGCTGTTGT 58.859 45.455 0.00 0.00 0.00 3.32
2348 6580 3.565482 CAGTTGGTGTGATAGCTGTTGTT 59.435 43.478 0.00 0.00 0.00 2.83
2349 6581 3.565482 AGTTGGTGTGATAGCTGTTGTTG 59.435 43.478 0.00 0.00 0.00 3.33
2350 6582 1.879380 TGGTGTGATAGCTGTTGTTGC 59.121 47.619 0.00 0.00 0.00 4.17
2351 6583 1.879380 GGTGTGATAGCTGTTGTTGCA 59.121 47.619 0.00 0.00 0.00 4.08
2352 6584 2.489329 GGTGTGATAGCTGTTGTTGCAT 59.511 45.455 0.00 0.00 0.00 3.96
2353 6585 3.495193 GTGTGATAGCTGTTGTTGCATG 58.505 45.455 0.00 0.00 0.00 4.06
2354 6586 3.058016 GTGTGATAGCTGTTGTTGCATGT 60.058 43.478 0.00 0.00 0.00 3.21
2355 6587 3.569277 TGTGATAGCTGTTGTTGCATGTT 59.431 39.130 0.00 0.00 0.00 2.71
2356 6588 4.161333 GTGATAGCTGTTGTTGCATGTTC 58.839 43.478 0.00 0.00 0.00 3.18
2357 6589 3.819902 TGATAGCTGTTGTTGCATGTTCA 59.180 39.130 0.00 0.00 0.00 3.18
2358 6590 4.277921 TGATAGCTGTTGTTGCATGTTCAA 59.722 37.500 0.00 0.00 0.00 2.69
2359 6591 3.523606 AGCTGTTGTTGCATGTTCAAA 57.476 38.095 0.00 0.00 0.00 2.69
2360 6592 3.189285 AGCTGTTGTTGCATGTTCAAAC 58.811 40.909 0.00 0.00 0.00 2.93
2361 6593 2.928757 GCTGTTGTTGCATGTTCAAACA 59.071 40.909 0.00 0.00 44.06 2.83
2362 6594 3.370366 GCTGTTGTTGCATGTTCAAACAA 59.630 39.130 11.52 11.52 43.03 2.83
2363 6595 4.034279 GCTGTTGTTGCATGTTCAAACAAT 59.966 37.500 15.91 0.00 43.03 2.71
2364 6596 5.447548 GCTGTTGTTGCATGTTCAAACAATT 60.448 36.000 15.91 0.00 43.03 2.32
2365 6597 6.104439 TGTTGTTGCATGTTCAAACAATTC 57.896 33.333 15.91 8.82 43.03 2.17
2366 6598 5.189625 GTTGTTGCATGTTCAAACAATTCG 58.810 37.500 15.91 0.00 43.03 3.34
2367 6599 4.676546 TGTTGCATGTTCAAACAATTCGA 58.323 34.783 0.00 0.00 43.03 3.71
2368 6600 5.288015 TGTTGCATGTTCAAACAATTCGAT 58.712 33.333 0.00 0.00 43.03 3.59
2369 6601 5.401972 TGTTGCATGTTCAAACAATTCGATC 59.598 36.000 0.00 0.00 43.03 3.69
2370 6602 4.157649 TGCATGTTCAAACAATTCGATCG 58.842 39.130 9.36 9.36 43.03 3.69
2371 6603 4.158384 GCATGTTCAAACAATTCGATCGT 58.842 39.130 15.94 0.00 43.03 3.73
2372 6604 4.260656 GCATGTTCAAACAATTCGATCGTC 59.739 41.667 15.94 0.00 43.03 4.20
2373 6605 5.381477 CATGTTCAAACAATTCGATCGTCA 58.619 37.500 15.94 3.44 43.03 4.35
2374 6606 4.768145 TGTTCAAACAATTCGATCGTCAC 58.232 39.130 15.94 0.00 35.67 3.67
2375 6607 3.698420 TCAAACAATTCGATCGTCACG 57.302 42.857 15.94 5.47 0.00 4.35
2376 6608 3.310246 TCAAACAATTCGATCGTCACGA 58.690 40.909 15.94 0.28 41.13 4.35
2377 6609 8.138394 TGTTCAAACAATTCGATCGTCACGAA 62.138 38.462 15.94 13.62 42.34 3.85
2378 6610 9.795755 TGTTCAAACAATTCGATCGTCACGAAG 62.796 40.741 15.94 1.13 41.92 3.79
2384 6616 3.547649 TCGATCGTCACGAAGAAAAGA 57.452 42.857 15.94 0.00 39.99 2.52
2385 6617 3.892522 TCGATCGTCACGAAGAAAAGAA 58.107 40.909 15.94 0.00 39.99 2.52
2386 6618 4.292599 TCGATCGTCACGAAGAAAAGAAA 58.707 39.130 15.94 0.00 39.99 2.52
2387 6619 4.741185 TCGATCGTCACGAAGAAAAGAAAA 59.259 37.500 15.94 0.00 39.99 2.29
2388 6620 5.232626 TCGATCGTCACGAAGAAAAGAAAAA 59.767 36.000 15.94 0.00 39.99 1.94
2389 6621 5.333621 CGATCGTCACGAAGAAAAGAAAAAC 59.666 40.000 2.76 0.00 39.99 2.43
2390 6622 5.533533 TCGTCACGAAGAAAAGAAAAACA 57.466 34.783 0.00 0.00 31.06 2.83
2391 6623 6.114221 TCGTCACGAAGAAAAGAAAAACAT 57.886 33.333 0.00 0.00 31.06 2.71
2392 6624 5.963004 TCGTCACGAAGAAAAGAAAAACATG 59.037 36.000 0.00 0.00 31.06 3.21
2393 6625 5.963004 CGTCACGAAGAAAAGAAAAACATGA 59.037 36.000 0.00 0.00 0.00 3.07
2394 6626 6.076092 CGTCACGAAGAAAAGAAAAACATGAC 60.076 38.462 0.00 0.00 0.00 3.06
2395 6627 6.745450 GTCACGAAGAAAAGAAAAACATGACA 59.255 34.615 0.00 0.00 33.46 3.58
2396 6628 6.745450 TCACGAAGAAAAGAAAAACATGACAC 59.255 34.615 0.00 0.00 0.00 3.67
2397 6629 6.526325 CACGAAGAAAAGAAAAACATGACACA 59.474 34.615 0.00 0.00 0.00 3.72
2398 6630 7.061673 CACGAAGAAAAGAAAAACATGACACAA 59.938 33.333 0.00 0.00 0.00 3.33
2399 6631 7.596995 ACGAAGAAAAGAAAAACATGACACAAA 59.403 29.630 0.00 0.00 0.00 2.83
2400 6632 8.103924 CGAAGAAAAGAAAAACATGACACAAAG 58.896 33.333 0.00 0.00 0.00 2.77
2401 6633 7.832503 AGAAAAGAAAAACATGACACAAAGG 57.167 32.000 0.00 0.00 0.00 3.11
2402 6634 7.610865 AGAAAAGAAAAACATGACACAAAGGA 58.389 30.769 0.00 0.00 0.00 3.36
2403 6635 8.260114 AGAAAAGAAAAACATGACACAAAGGAT 58.740 29.630 0.00 0.00 0.00 3.24
2404 6636 7.775397 AAAGAAAAACATGACACAAAGGATG 57.225 32.000 0.00 0.00 0.00 3.51
2405 6637 5.846203 AGAAAAACATGACACAAAGGATGG 58.154 37.500 0.00 0.00 0.00 3.51
2406 6638 5.598005 AGAAAAACATGACACAAAGGATGGA 59.402 36.000 0.00 0.00 0.00 3.41
2407 6639 5.867903 AAAACATGACACAAAGGATGGAA 57.132 34.783 0.00 0.00 0.00 3.53
2408 6640 5.867903 AAACATGACACAAAGGATGGAAA 57.132 34.783 0.00 0.00 0.00 3.13
2409 6641 5.867903 AACATGACACAAAGGATGGAAAA 57.132 34.783 0.00 0.00 0.00 2.29
2410 6642 5.200368 ACATGACACAAAGGATGGAAAAC 57.800 39.130 0.00 0.00 0.00 2.43
2411 6643 4.895297 ACATGACACAAAGGATGGAAAACT 59.105 37.500 0.00 0.00 0.00 2.66
2412 6644 6.068010 ACATGACACAAAGGATGGAAAACTA 58.932 36.000 0.00 0.00 0.00 2.24
2413 6645 6.016276 ACATGACACAAAGGATGGAAAACTAC 60.016 38.462 0.00 0.00 0.00 2.73
2414 6646 5.690865 TGACACAAAGGATGGAAAACTACT 58.309 37.500 0.00 0.00 0.00 2.57
2415 6647 6.126409 TGACACAAAGGATGGAAAACTACTT 58.874 36.000 0.00 0.00 0.00 2.24
2416 6648 6.039270 TGACACAAAGGATGGAAAACTACTTG 59.961 38.462 0.00 0.00 0.00 3.16
2417 6649 5.891551 ACACAAAGGATGGAAAACTACTTGT 59.108 36.000 0.00 0.00 0.00 3.16
2418 6650 7.057894 ACACAAAGGATGGAAAACTACTTGTA 58.942 34.615 0.00 0.00 0.00 2.41
2419 6651 7.724061 ACACAAAGGATGGAAAACTACTTGTAT 59.276 33.333 0.00 0.00 0.00 2.29
2420 6652 8.576442 CACAAAGGATGGAAAACTACTTGTATT 58.424 33.333 0.00 0.00 0.00 1.89
2421 6653 9.802039 ACAAAGGATGGAAAACTACTTGTATTA 57.198 29.630 0.00 0.00 0.00 0.98
2424 6656 9.802039 AAGGATGGAAAACTACTTGTATTAACA 57.198 29.630 0.00 0.00 0.00 2.41
2425 6657 9.227777 AGGATGGAAAACTACTTGTATTAACAC 57.772 33.333 0.00 0.00 34.61 3.32
2426 6658 9.005777 GGATGGAAAACTACTTGTATTAACACA 57.994 33.333 0.00 0.00 34.61 3.72
2438 6670 9.965824 ACTTGTATTAACACATTCTCTTTTTGG 57.034 29.630 0.00 0.00 34.61 3.28
2439 6671 9.410556 CTTGTATTAACACATTCTCTTTTTGGG 57.589 33.333 0.00 0.00 34.61 4.12
2440 6672 8.472007 TGTATTAACACATTCTCTTTTTGGGT 57.528 30.769 0.00 0.00 0.00 4.51
2441 6673 8.919145 TGTATTAACACATTCTCTTTTTGGGTT 58.081 29.630 0.00 0.00 40.03 4.11
2442 6674 9.758651 GTATTAACACATTCTCTTTTTGGGTTT 57.241 29.630 0.00 0.00 38.01 3.27
2444 6676 9.679661 ATTAACACATTCTCTTTTTGGGTTTTT 57.320 25.926 0.00 0.00 38.01 1.94
2528 6760 4.062991 GTCCGATACAACCTTTTGTGACT 58.937 43.478 0.21 0.00 45.91 3.41
2570 6802 3.855689 AAATCAAACCCGCATGAAGAG 57.144 42.857 0.00 0.00 0.00 2.85
2616 6848 3.838271 ACACGCCGGATCTCGCAT 61.838 61.111 5.05 0.00 37.59 4.73
2617 6849 3.333189 CACGCCGGATCTCGCATG 61.333 66.667 5.05 0.00 37.59 4.06
2619 6851 4.957684 CGCCGGATCTCGCATGCT 62.958 66.667 17.13 0.00 37.59 3.79
2620 6852 2.590007 GCCGGATCTCGCATGCTT 60.590 61.111 17.13 0.00 37.59 3.91
2621 6853 2.890109 GCCGGATCTCGCATGCTTG 61.890 63.158 17.13 8.28 37.59 4.01
2622 6854 1.522355 CCGGATCTCGCATGCTTGT 60.522 57.895 17.13 0.00 37.59 3.16
2623 6855 1.493950 CCGGATCTCGCATGCTTGTC 61.494 60.000 17.13 8.26 37.59 3.18
2624 6856 1.815212 CGGATCTCGCATGCTTGTCG 61.815 60.000 17.13 8.22 0.00 4.35
2625 6857 1.493950 GGATCTCGCATGCTTGTCGG 61.494 60.000 17.13 0.00 0.00 4.79
2626 6858 2.098842 GATCTCGCATGCTTGTCGGC 62.099 60.000 17.13 0.00 0.00 5.54
2627 6859 3.869272 CTCGCATGCTTGTCGGCC 61.869 66.667 17.13 0.00 0.00 6.13
2628 6860 4.695993 TCGCATGCTTGTCGGCCA 62.696 61.111 17.13 0.00 0.00 5.36
2629 6861 4.465512 CGCATGCTTGTCGGCCAC 62.466 66.667 17.13 0.25 0.00 5.01
2630 6862 4.120331 GCATGCTTGTCGGCCACC 62.120 66.667 11.37 0.00 0.00 4.61
2631 6863 2.360350 CATGCTTGTCGGCCACCT 60.360 61.111 2.24 0.00 0.00 4.00
2632 6864 2.360350 ATGCTTGTCGGCCACCTG 60.360 61.111 2.24 0.00 0.00 4.00
2677 6935 0.618458 TAGTCGGCTTCCCATGCTTT 59.382 50.000 0.00 0.00 0.00 3.51
2744 7002 3.002583 TGCCTCCACTCGCCATGA 61.003 61.111 0.00 0.00 0.00 3.07
2746 7004 3.023949 GCCTCCACTCGCCATGACT 62.024 63.158 0.00 0.00 0.00 3.41
2750 7008 2.267006 CACTCGCCATGACTGCCT 59.733 61.111 0.00 0.00 0.00 4.75
2757 7015 2.580815 CATGACTGCCTCCGCTCA 59.419 61.111 0.00 0.00 35.36 4.26
2830 7088 2.037847 GGTTTGCAGCATCCCCCT 59.962 61.111 0.00 0.00 0.00 4.79
2850 7108 2.722201 GCGTTCCCTCATCTCCGGT 61.722 63.158 0.00 0.00 0.00 5.28
2865 7123 4.423764 GGTTCGTCACCGTTGTCA 57.576 55.556 0.00 0.00 35.12 3.58
2875 7133 2.184167 CCGTTGTCAACTTGCCCGT 61.184 57.895 13.67 0.00 0.00 5.28
2881 7139 0.238289 GTCAACTTGCCCGTCATGTG 59.762 55.000 0.00 0.00 33.87 3.21
2898 7156 6.914215 CGTCATGTGCAGCAAAAATAATCTAT 59.086 34.615 0.00 0.00 0.00 1.98
2959 7245 2.982470 GTTCCAGCAAAAATTCTCAGCG 59.018 45.455 0.00 0.00 0.00 5.18
2973 7331 0.250684 TCAGCGGCAGAAAACCATGA 60.251 50.000 1.45 0.00 0.00 3.07
2980 7338 1.266718 GCAGAAAACCATGACTCGCAA 59.733 47.619 0.00 0.00 0.00 4.85
2981 7339 2.095059 GCAGAAAACCATGACTCGCAAT 60.095 45.455 0.00 0.00 0.00 3.56
2987 7345 2.503331 ACCATGACTCGCAATCAACAA 58.497 42.857 0.00 0.00 0.00 2.83
3016 7374 6.639563 AGTAGCAAATTTTTGTGTTGGTTCT 58.360 32.000 5.05 0.00 40.24 3.01
3018 7376 6.902224 AGCAAATTTTTGTGTTGGTTCTAC 57.098 33.333 5.05 0.00 40.24 2.59
3036 7394 4.274147 TCTACCAAAGCCAAAAACAGTGA 58.726 39.130 0.00 0.00 0.00 3.41
3058 7416 5.413833 TGAAAGCAAAAATGCAAAAACTGGA 59.586 32.000 3.41 0.00 37.25 3.86
3068 7426 2.167487 GCAAAAACTGGACCCTTTGTGA 59.833 45.455 6.22 0.00 32.54 3.58
3125 7483 4.677673 AGCAAAAATTGAAGCTGGTTCT 57.322 36.364 19.08 0.00 35.72 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.298157 TACTCATGTGCGCAAGGTGC 61.298 55.000 14.00 0.00 40.69 5.01
2 3 0.723414 CTACTCATGTGCGCAAGGTG 59.277 55.000 14.00 11.83 38.28 4.00
4 5 0.742281 AGCTACTCATGTGCGCAAGG 60.742 55.000 14.00 4.47 38.28 3.61
5 6 1.061711 GAAGCTACTCATGTGCGCAAG 59.938 52.381 14.00 8.81 43.44 4.01
6 7 1.078709 GAAGCTACTCATGTGCGCAA 58.921 50.000 14.00 2.60 0.00 4.85
7 8 0.037419 TGAAGCTACTCATGTGCGCA 60.037 50.000 5.66 5.66 0.00 6.09
8 9 1.078709 TTGAAGCTACTCATGTGCGC 58.921 50.000 0.00 0.00 0.00 6.09
9 10 2.286294 GGATTGAAGCTACTCATGTGCG 59.714 50.000 0.00 0.00 0.00 5.34
10 11 2.615912 GGGATTGAAGCTACTCATGTGC 59.384 50.000 0.00 0.00 0.00 4.57
11 12 3.624861 GTGGGATTGAAGCTACTCATGTG 59.375 47.826 0.00 0.00 0.00 3.21
12 13 3.264193 TGTGGGATTGAAGCTACTCATGT 59.736 43.478 0.00 0.00 0.00 3.21
13 14 3.877559 TGTGGGATTGAAGCTACTCATG 58.122 45.455 0.00 0.00 0.00 3.07
14 15 4.574674 TTGTGGGATTGAAGCTACTCAT 57.425 40.909 0.00 0.00 0.00 2.90
15 16 4.365514 TTTGTGGGATTGAAGCTACTCA 57.634 40.909 0.00 0.00 0.00 3.41
16 17 5.904362 ATTTTGTGGGATTGAAGCTACTC 57.096 39.130 0.00 0.00 0.00 2.59
17 18 6.670695 AAATTTTGTGGGATTGAAGCTACT 57.329 33.333 0.00 0.00 0.00 2.57
18 19 8.303876 TCTAAAATTTTGTGGGATTGAAGCTAC 58.696 33.333 13.76 0.00 0.00 3.58
19 20 8.415950 TCTAAAATTTTGTGGGATTGAAGCTA 57.584 30.769 13.76 0.00 0.00 3.32
20 21 7.301868 TCTAAAATTTTGTGGGATTGAAGCT 57.698 32.000 13.76 0.00 0.00 3.74
21 22 8.552083 AATCTAAAATTTTGTGGGATTGAAGC 57.448 30.769 13.76 0.00 0.00 3.86
58 59 5.534207 ACAGCTTTGACCATCATGAAAAA 57.466 34.783 0.00 0.00 0.00 1.94
59 60 5.534207 AACAGCTTTGACCATCATGAAAA 57.466 34.783 0.00 0.00 0.00 2.29
60 61 5.068855 TCAAACAGCTTTGACCATCATGAAA 59.931 36.000 0.00 0.00 40.76 2.69
61 62 4.583907 TCAAACAGCTTTGACCATCATGAA 59.416 37.500 0.00 0.00 40.76 2.57
62 63 4.143543 TCAAACAGCTTTGACCATCATGA 58.856 39.130 0.00 0.00 40.76 3.07
63 64 4.508461 TCAAACAGCTTTGACCATCATG 57.492 40.909 0.00 0.00 40.76 3.07
71 72 1.939934 CGTCTGGTCAAACAGCTTTGA 59.060 47.619 0.00 0.00 42.93 2.69
72 73 1.002468 CCGTCTGGTCAAACAGCTTTG 60.002 52.381 0.00 0.00 38.36 2.77
73 74 1.308998 CCGTCTGGTCAAACAGCTTT 58.691 50.000 0.00 0.00 38.36 3.51
74 75 3.006672 CCGTCTGGTCAAACAGCTT 57.993 52.632 0.00 0.00 38.36 3.74
75 76 4.779475 CCGTCTGGTCAAACAGCT 57.221 55.556 0.00 0.00 38.36 4.24
85 86 2.048597 TGCGCTGTTACCGTCTGG 60.049 61.111 9.73 0.00 42.84 3.86
86 87 0.666274 TTCTGCGCTGTTACCGTCTG 60.666 55.000 9.73 0.00 0.00 3.51
87 88 0.388649 CTTCTGCGCTGTTACCGTCT 60.389 55.000 9.73 0.00 0.00 4.18
88 89 1.352156 CCTTCTGCGCTGTTACCGTC 61.352 60.000 9.73 0.00 0.00 4.79
89 90 1.374252 CCTTCTGCGCTGTTACCGT 60.374 57.895 9.73 0.00 0.00 4.83
90 91 2.100631 CCCTTCTGCGCTGTTACCG 61.101 63.158 9.73 0.00 0.00 4.02
91 92 2.399356 GCCCTTCTGCGCTGTTACC 61.399 63.158 9.73 0.00 0.00 2.85
92 93 1.026718 ATGCCCTTCTGCGCTGTTAC 61.027 55.000 9.73 0.00 0.00 2.50
93 94 0.322456 AATGCCCTTCTGCGCTGTTA 60.322 50.000 9.73 0.13 0.00 2.41
94 95 1.181098 AAATGCCCTTCTGCGCTGTT 61.181 50.000 9.73 0.00 0.00 3.16
95 96 1.589716 GAAATGCCCTTCTGCGCTGT 61.590 55.000 9.73 0.00 0.00 4.40
96 97 1.138247 GAAATGCCCTTCTGCGCTG 59.862 57.895 9.73 8.88 0.00 5.18
97 98 0.253044 TAGAAATGCCCTTCTGCGCT 59.747 50.000 9.73 0.00 36.34 5.92
98 99 1.312815 ATAGAAATGCCCTTCTGCGC 58.687 50.000 0.00 0.00 36.34 6.09
99 100 3.499918 CCTTATAGAAATGCCCTTCTGCG 59.500 47.826 7.47 0.00 36.34 5.18
100 101 3.823304 CCCTTATAGAAATGCCCTTCTGC 59.177 47.826 7.47 0.00 36.34 4.26
101 102 3.823304 GCCCTTATAGAAATGCCCTTCTG 59.177 47.826 7.47 0.00 36.34 3.02
102 103 3.463329 TGCCCTTATAGAAATGCCCTTCT 59.537 43.478 3.21 3.21 39.09 2.85
103 104 3.832527 TGCCCTTATAGAAATGCCCTTC 58.167 45.455 0.00 0.00 0.00 3.46
104 105 3.960755 GTTGCCCTTATAGAAATGCCCTT 59.039 43.478 0.00 0.00 0.00 3.95
105 106 3.205282 AGTTGCCCTTATAGAAATGCCCT 59.795 43.478 0.00 0.00 0.00 5.19
106 107 3.566351 AGTTGCCCTTATAGAAATGCCC 58.434 45.455 0.00 0.00 0.00 5.36
107 108 5.277828 CGTTAGTTGCCCTTATAGAAATGCC 60.278 44.000 0.00 0.00 0.00 4.40
108 109 5.526111 TCGTTAGTTGCCCTTATAGAAATGC 59.474 40.000 0.00 0.00 0.00 3.56
109 110 6.537301 TGTCGTTAGTTGCCCTTATAGAAATG 59.463 38.462 0.00 0.00 0.00 2.32
110 111 6.646267 TGTCGTTAGTTGCCCTTATAGAAAT 58.354 36.000 0.00 0.00 0.00 2.17
111 112 6.040209 TGTCGTTAGTTGCCCTTATAGAAA 57.960 37.500 0.00 0.00 0.00 2.52
112 113 5.419788 TCTGTCGTTAGTTGCCCTTATAGAA 59.580 40.000 0.00 0.00 0.00 2.10
113 114 4.951715 TCTGTCGTTAGTTGCCCTTATAGA 59.048 41.667 0.00 0.00 0.00 1.98
114 115 5.258456 TCTGTCGTTAGTTGCCCTTATAG 57.742 43.478 0.00 0.00 0.00 1.31
115 116 4.098960 CCTCTGTCGTTAGTTGCCCTTATA 59.901 45.833 0.00 0.00 0.00 0.98
116 117 3.118738 CCTCTGTCGTTAGTTGCCCTTAT 60.119 47.826 0.00 0.00 0.00 1.73
117 118 2.232941 CCTCTGTCGTTAGTTGCCCTTA 59.767 50.000 0.00 0.00 0.00 2.69
118 119 1.002087 CCTCTGTCGTTAGTTGCCCTT 59.998 52.381 0.00 0.00 0.00 3.95
119 120 0.608640 CCTCTGTCGTTAGTTGCCCT 59.391 55.000 0.00 0.00 0.00 5.19
120 121 0.391263 CCCTCTGTCGTTAGTTGCCC 60.391 60.000 0.00 0.00 0.00 5.36
121 122 0.391263 CCCCTCTGTCGTTAGTTGCC 60.391 60.000 0.00 0.00 0.00 4.52
122 123 0.320697 ACCCCTCTGTCGTTAGTTGC 59.679 55.000 0.00 0.00 0.00 4.17
123 124 3.947910 TTACCCCTCTGTCGTTAGTTG 57.052 47.619 0.00 0.00 0.00 3.16
124 125 5.494390 AATTTACCCCTCTGTCGTTAGTT 57.506 39.130 0.00 0.00 0.00 2.24
125 126 5.012354 TCAAATTTACCCCTCTGTCGTTAGT 59.988 40.000 0.00 0.00 0.00 2.24
126 127 5.484715 TCAAATTTACCCCTCTGTCGTTAG 58.515 41.667 0.00 0.00 0.00 2.34
127 128 5.484715 CTCAAATTTACCCCTCTGTCGTTA 58.515 41.667 0.00 0.00 0.00 3.18
128 129 4.324267 CTCAAATTTACCCCTCTGTCGTT 58.676 43.478 0.00 0.00 0.00 3.85
129 130 3.868754 GCTCAAATTTACCCCTCTGTCGT 60.869 47.826 0.00 0.00 0.00 4.34
130 131 2.678336 GCTCAAATTTACCCCTCTGTCG 59.322 50.000 0.00 0.00 0.00 4.35
131 132 3.440522 GTGCTCAAATTTACCCCTCTGTC 59.559 47.826 0.00 0.00 0.00 3.51
132 133 3.181434 TGTGCTCAAATTTACCCCTCTGT 60.181 43.478 0.00 0.00 0.00 3.41
133 134 3.191371 GTGTGCTCAAATTTACCCCTCTG 59.809 47.826 0.00 0.00 0.00 3.35
134 135 3.181434 TGTGTGCTCAAATTTACCCCTCT 60.181 43.478 0.00 0.00 0.00 3.69
135 136 3.153919 TGTGTGCTCAAATTTACCCCTC 58.846 45.455 0.00 0.00 0.00 4.30
136 137 3.237268 TGTGTGCTCAAATTTACCCCT 57.763 42.857 0.00 0.00 0.00 4.79
137 138 4.021544 TCAATGTGTGCTCAAATTTACCCC 60.022 41.667 1.33 0.00 29.87 4.95
138 139 5.132897 TCAATGTGTGCTCAAATTTACCC 57.867 39.130 1.33 0.00 29.87 3.69
139 140 7.656707 ATTTCAATGTGTGCTCAAATTTACC 57.343 32.000 1.33 0.00 29.87 2.85
141 142 9.421806 CCTAATTTCAATGTGTGCTCAAATTTA 57.578 29.630 1.33 0.00 29.87 1.40
142 143 7.388500 CCCTAATTTCAATGTGTGCTCAAATTT 59.612 33.333 1.33 0.00 29.87 1.82
143 144 6.875195 CCCTAATTTCAATGTGTGCTCAAATT 59.125 34.615 0.00 0.00 32.26 1.82
144 145 6.400568 CCCTAATTTCAATGTGTGCTCAAAT 58.599 36.000 0.00 0.00 0.00 2.32
145 146 5.279406 CCCCTAATTTCAATGTGTGCTCAAA 60.279 40.000 0.00 0.00 0.00 2.69
146 147 4.220382 CCCCTAATTTCAATGTGTGCTCAA 59.780 41.667 0.00 0.00 0.00 3.02
147 148 3.763360 CCCCTAATTTCAATGTGTGCTCA 59.237 43.478 0.00 0.00 0.00 4.26
148 149 3.429410 GCCCCTAATTTCAATGTGTGCTC 60.429 47.826 0.00 0.00 0.00 4.26
149 150 2.497273 GCCCCTAATTTCAATGTGTGCT 59.503 45.455 0.00 0.00 0.00 4.40
150 151 2.233431 TGCCCCTAATTTCAATGTGTGC 59.767 45.455 0.00 0.00 0.00 4.57
151 152 3.257873 TGTGCCCCTAATTTCAATGTGTG 59.742 43.478 0.00 0.00 0.00 3.82
152 153 3.505386 TGTGCCCCTAATTTCAATGTGT 58.495 40.909 0.00 0.00 0.00 3.72
153 154 4.741321 ATGTGCCCCTAATTTCAATGTG 57.259 40.909 0.00 0.00 0.00 3.21
154 155 5.248020 TCAAATGTGCCCCTAATTTCAATGT 59.752 36.000 0.00 0.00 0.00 2.71
155 156 5.732633 TCAAATGTGCCCCTAATTTCAATG 58.267 37.500 0.00 0.00 0.00 2.82
156 157 6.371595 TTCAAATGTGCCCCTAATTTCAAT 57.628 33.333 0.00 0.00 0.00 2.57
157 158 5.815233 TTCAAATGTGCCCCTAATTTCAA 57.185 34.783 0.00 0.00 0.00 2.69
158 159 6.667414 ACTATTCAAATGTGCCCCTAATTTCA 59.333 34.615 0.00 0.00 0.00 2.69
159 160 6.980397 CACTATTCAAATGTGCCCCTAATTTC 59.020 38.462 0.00 0.00 0.00 2.17
160 161 6.667414 TCACTATTCAAATGTGCCCCTAATTT 59.333 34.615 0.00 0.00 0.00 1.82
161 162 6.194235 TCACTATTCAAATGTGCCCCTAATT 58.806 36.000 0.00 0.00 0.00 1.40
162 163 5.765510 TCACTATTCAAATGTGCCCCTAAT 58.234 37.500 0.00 0.00 0.00 1.73
163 164 5.186256 TCACTATTCAAATGTGCCCCTAA 57.814 39.130 0.00 0.00 0.00 2.69
164 165 4.227300 ACTCACTATTCAAATGTGCCCCTA 59.773 41.667 0.00 0.00 0.00 3.53
165 166 3.010584 ACTCACTATTCAAATGTGCCCCT 59.989 43.478 0.00 0.00 0.00 4.79
166 167 3.356290 ACTCACTATTCAAATGTGCCCC 58.644 45.455 0.00 0.00 0.00 5.80
167 168 5.048083 TGAAACTCACTATTCAAATGTGCCC 60.048 40.000 0.00 0.00 32.89 5.36
168 169 6.012658 TGAAACTCACTATTCAAATGTGCC 57.987 37.500 0.00 0.00 32.89 5.01
169 170 6.672147 ACTGAAACTCACTATTCAAATGTGC 58.328 36.000 0.00 0.00 35.31 4.57
170 171 9.817365 CTAACTGAAACTCACTATTCAAATGTG 57.183 33.333 0.00 0.00 35.31 3.21
171 172 9.003658 CCTAACTGAAACTCACTATTCAAATGT 57.996 33.333 0.00 0.00 35.31 2.71
172 173 8.454106 CCCTAACTGAAACTCACTATTCAAATG 58.546 37.037 0.00 0.00 35.31 2.32
173 174 7.611855 CCCCTAACTGAAACTCACTATTCAAAT 59.388 37.037 0.00 0.00 35.31 2.32
174 175 6.940298 CCCCTAACTGAAACTCACTATTCAAA 59.060 38.462 0.00 0.00 35.31 2.69
175 176 6.472887 CCCCTAACTGAAACTCACTATTCAA 58.527 40.000 0.00 0.00 35.31 2.69
176 177 5.570844 GCCCCTAACTGAAACTCACTATTCA 60.571 44.000 0.00 0.00 34.57 2.57
177 178 4.876679 GCCCCTAACTGAAACTCACTATTC 59.123 45.833 0.00 0.00 0.00 1.75
178 179 4.288626 TGCCCCTAACTGAAACTCACTATT 59.711 41.667 0.00 0.00 0.00 1.73
179 180 3.844211 TGCCCCTAACTGAAACTCACTAT 59.156 43.478 0.00 0.00 0.00 2.12
180 181 3.244582 TGCCCCTAACTGAAACTCACTA 58.755 45.455 0.00 0.00 0.00 2.74
181 182 2.039084 CTGCCCCTAACTGAAACTCACT 59.961 50.000 0.00 0.00 0.00 3.41
182 183 2.038557 TCTGCCCCTAACTGAAACTCAC 59.961 50.000 0.00 0.00 0.00 3.51
183 184 2.334977 TCTGCCCCTAACTGAAACTCA 58.665 47.619 0.00 0.00 0.00 3.41
184 185 3.418684 TTCTGCCCCTAACTGAAACTC 57.581 47.619 0.00 0.00 0.00 3.01
185 186 3.876309 TTTCTGCCCCTAACTGAAACT 57.124 42.857 0.00 0.00 32.25 2.66
186 187 4.079253 TCATTTCTGCCCCTAACTGAAAC 58.921 43.478 0.00 0.00 37.65 2.78
187 188 4.380843 TCATTTCTGCCCCTAACTGAAA 57.619 40.909 0.00 0.00 38.69 2.69
188 189 4.380843 TTCATTTCTGCCCCTAACTGAA 57.619 40.909 0.00 0.00 0.00 3.02
189 190 4.380843 TTTCATTTCTGCCCCTAACTGA 57.619 40.909 0.00 0.00 0.00 3.41
190 191 5.047092 ACAATTTCATTTCTGCCCCTAACTG 60.047 40.000 0.00 0.00 0.00 3.16
191 192 5.086621 ACAATTTCATTTCTGCCCCTAACT 58.913 37.500 0.00 0.00 0.00 2.24
192 193 5.405935 ACAATTTCATTTCTGCCCCTAAC 57.594 39.130 0.00 0.00 0.00 2.34
193 194 4.466015 GGACAATTTCATTTCTGCCCCTAA 59.534 41.667 0.00 0.00 0.00 2.69
194 195 4.023291 GGACAATTTCATTTCTGCCCCTA 58.977 43.478 0.00 0.00 0.00 3.53
195 196 2.833943 GGACAATTTCATTTCTGCCCCT 59.166 45.455 0.00 0.00 0.00 4.79
196 197 2.093500 GGGACAATTTCATTTCTGCCCC 60.093 50.000 0.00 0.00 0.00 5.80
197 198 2.833943 AGGGACAATTTCATTTCTGCCC 59.166 45.455 0.00 0.00 0.00 5.36
198 199 3.428045 CGAGGGACAATTTCATTTCTGCC 60.428 47.826 0.00 0.00 0.00 4.85
199 200 3.440173 TCGAGGGACAATTTCATTTCTGC 59.560 43.478 0.00 0.00 0.00 4.26
200 201 5.627499 TTCGAGGGACAATTTCATTTCTG 57.373 39.130 0.00 0.00 0.00 3.02
201 202 6.648879 TTTTCGAGGGACAATTTCATTTCT 57.351 33.333 0.00 0.00 0.00 2.52
202 203 7.889589 AATTTTCGAGGGACAATTTCATTTC 57.110 32.000 0.00 0.00 30.38 2.17
203 204 9.423061 CTTAATTTTCGAGGGACAATTTCATTT 57.577 29.630 0.00 0.00 35.02 2.32
204 205 7.545615 GCTTAATTTTCGAGGGACAATTTCATT 59.454 33.333 0.00 0.00 35.02 2.57
205 206 7.035612 GCTTAATTTTCGAGGGACAATTTCAT 58.964 34.615 0.00 0.00 35.02 2.57
206 207 6.386654 GCTTAATTTTCGAGGGACAATTTCA 58.613 36.000 0.00 0.00 35.02 2.69
207 208 5.805486 GGCTTAATTTTCGAGGGACAATTTC 59.195 40.000 0.00 0.00 35.02 2.17
208 209 5.337250 GGGCTTAATTTTCGAGGGACAATTT 60.337 40.000 0.00 0.00 35.02 1.82
209 210 4.159693 GGGCTTAATTTTCGAGGGACAATT 59.840 41.667 0.00 0.00 36.69 2.32
210 211 3.699538 GGGCTTAATTTTCGAGGGACAAT 59.300 43.478 0.00 0.00 0.00 2.71
211 212 3.086282 GGGCTTAATTTTCGAGGGACAA 58.914 45.455 0.00 0.00 0.00 3.18
212 213 2.718563 GGGCTTAATTTTCGAGGGACA 58.281 47.619 0.00 0.00 0.00 4.02
213 214 1.669265 CGGGCTTAATTTTCGAGGGAC 59.331 52.381 0.00 0.00 0.00 4.46
214 215 1.279846 ACGGGCTTAATTTTCGAGGGA 59.720 47.619 0.00 0.00 0.00 4.20
215 216 1.400494 CACGGGCTTAATTTTCGAGGG 59.600 52.381 0.00 0.00 0.00 4.30
216 217 2.081462 ACACGGGCTTAATTTTCGAGG 58.919 47.619 0.00 0.00 0.00 4.63
217 218 2.482721 ACACACGGGCTTAATTTTCGAG 59.517 45.455 0.00 0.00 0.00 4.04
218 219 2.496111 ACACACGGGCTTAATTTTCGA 58.504 42.857 0.00 0.00 0.00 3.71
219 220 2.981400 ACACACGGGCTTAATTTTCG 57.019 45.000 0.00 0.00 0.00 3.46
230 231 3.322541 AGGGGAAAATTAAAACACACGGG 59.677 43.478 0.00 0.00 0.00 5.28
231 232 4.594123 AGGGGAAAATTAAAACACACGG 57.406 40.909 0.00 0.00 0.00 4.94
232 233 5.575218 GCATAGGGGAAAATTAAAACACACG 59.425 40.000 0.00 0.00 0.00 4.49
245 246 7.286775 GGTACTTTCAAATATGCATAGGGGAAA 59.713 37.037 19.67 19.67 0.00 3.13
247 248 6.126332 TGGTACTTTCAAATATGCATAGGGGA 60.126 38.462 12.79 6.26 0.00 4.81
249 250 7.581213 TTGGTACTTTCAAATATGCATAGGG 57.419 36.000 12.79 4.32 0.00 3.53
282 283 5.998981 ACGGTGAGTATTTGGTTGTTATGAA 59.001 36.000 0.00 0.00 0.00 2.57
296 297 9.750783 AAGGTAGTTATCATATACGGTGAGTAT 57.249 33.333 0.00 0.00 46.90 2.12
375 378 6.715344 TGCGTATTTCACCGGATATAATTC 57.285 37.500 9.46 0.00 0.00 2.17
376 379 7.499321 TTTGCGTATTTCACCGGATATAATT 57.501 32.000 9.46 0.00 0.00 1.40
377 380 7.681939 ATTTGCGTATTTCACCGGATATAAT 57.318 32.000 9.46 4.78 0.00 1.28
378 381 7.499321 AATTTGCGTATTTCACCGGATATAA 57.501 32.000 9.46 0.00 0.00 0.98
379 382 7.499321 AAATTTGCGTATTTCACCGGATATA 57.501 32.000 9.46 0.00 0.00 0.86
380 383 6.385649 AAATTTGCGTATTTCACCGGATAT 57.614 33.333 9.46 0.00 0.00 1.63
381 384 5.821516 AAATTTGCGTATTTCACCGGATA 57.178 34.783 9.46 0.00 0.00 2.59
382 385 4.712122 AAATTTGCGTATTTCACCGGAT 57.288 36.364 9.46 0.00 0.00 4.18
383 386 5.821516 ATAAATTTGCGTATTTCACCGGA 57.178 34.783 9.46 0.00 0.00 5.14
384 387 7.972623 TTAATAAATTTGCGTATTTCACCGG 57.027 32.000 0.00 0.00 0.00 5.28
439 4420 4.853924 ACGAACTCAAGCCATCAAATTT 57.146 36.364 0.00 0.00 0.00 1.82
440 4421 4.520492 AGAACGAACTCAAGCCATCAAATT 59.480 37.500 0.00 0.00 0.00 1.82
441 4422 4.074970 AGAACGAACTCAAGCCATCAAAT 58.925 39.130 0.00 0.00 0.00 2.32
460 4441 3.634504 CACCCAATGATCCAATCCAGAA 58.365 45.455 0.00 0.00 0.00 3.02
511 4492 3.996744 CTTCGACGTCGTCCTCGCC 62.997 68.421 34.40 0.00 40.80 5.54
523 4504 3.064134 GGAGGCTGAAAATAAGCTTCGAC 59.936 47.826 0.00 0.00 45.11 4.20
565 4548 0.918258 TCATATGGTTCTGGCCTGCA 59.082 50.000 3.32 0.00 0.00 4.41
674 4659 2.559285 AAAGGGTCCTTTTCCGGGA 58.441 52.632 9.05 0.00 42.93 5.14
963 4980 2.096496 GCAAATCAGCTCGTGTAATGCT 59.904 45.455 0.00 0.00 37.56 3.79
1153 5179 1.137404 CGTACGTGTAGAACCCCCG 59.863 63.158 7.22 0.00 0.00 5.73
1701 5917 4.209112 CGAAAACGAAAGCTTACTTGGAC 58.791 43.478 0.00 0.00 35.85 4.02
1707 5923 1.960549 CACGCGAAAACGAAAGCTTAC 59.039 47.619 15.93 0.00 36.70 2.34
1738 5955 5.610398 CCAACTGGGCTTTTCTTGTTATTT 58.390 37.500 0.00 0.00 0.00 1.40
1803 6031 1.647545 CGCCTGGTCAATCGCACAAT 61.648 55.000 0.00 0.00 0.00 2.71
1853 6085 2.224159 GCTCACCAGGTCCTTCCCA 61.224 63.158 0.00 0.00 36.75 4.37
2303 6535 9.159254 ACTGGTCTGTTATATAATCTGATTCCA 57.841 33.333 6.10 3.43 0.00 3.53
2306 6538 9.784531 CCAACTGGTCTGTTATATAATCTGATT 57.215 33.333 8.14 8.14 0.00 2.57
2325 6557 2.479566 ACAGCTATCACACCAACTGG 57.520 50.000 0.00 0.00 42.17 4.00
2326 6558 3.141398 ACAACAGCTATCACACCAACTG 58.859 45.455 0.00 0.00 0.00 3.16
2327 6559 3.492102 ACAACAGCTATCACACCAACT 57.508 42.857 0.00 0.00 0.00 3.16
2328 6560 3.853307 GCAACAACAGCTATCACACCAAC 60.853 47.826 0.00 0.00 0.00 3.77
2329 6561 2.293122 GCAACAACAGCTATCACACCAA 59.707 45.455 0.00 0.00 0.00 3.67
2330 6562 1.879380 GCAACAACAGCTATCACACCA 59.121 47.619 0.00 0.00 0.00 4.17
2331 6563 1.879380 TGCAACAACAGCTATCACACC 59.121 47.619 0.00 0.00 0.00 4.16
2332 6564 3.058016 ACATGCAACAACAGCTATCACAC 60.058 43.478 0.00 0.00 0.00 3.82
2333 6565 3.148412 ACATGCAACAACAGCTATCACA 58.852 40.909 0.00 0.00 0.00 3.58
2334 6566 3.837213 ACATGCAACAACAGCTATCAC 57.163 42.857 0.00 0.00 0.00 3.06
2335 6567 3.819902 TGAACATGCAACAACAGCTATCA 59.180 39.130 0.00 0.00 0.00 2.15
2336 6568 4.424061 TGAACATGCAACAACAGCTATC 57.576 40.909 0.00 0.00 0.00 2.08
2337 6569 4.852134 TTGAACATGCAACAACAGCTAT 57.148 36.364 0.00 0.00 0.00 2.97
2338 6570 4.142293 TGTTTGAACATGCAACAACAGCTA 60.142 37.500 0.00 0.00 33.17 3.32
2339 6571 3.189285 GTTTGAACATGCAACAACAGCT 58.811 40.909 0.00 0.00 0.00 4.24
2340 6572 2.928757 TGTTTGAACATGCAACAACAGC 59.071 40.909 0.00 0.00 33.17 4.40
2341 6573 5.721876 ATTGTTTGAACATGCAACAACAG 57.278 34.783 12.65 0.00 38.95 3.16
2342 6574 5.220359 CGAATTGTTTGAACATGCAACAACA 60.220 36.000 12.65 6.25 38.95 3.33
2343 6575 5.005203 TCGAATTGTTTGAACATGCAACAAC 59.995 36.000 12.65 4.12 38.95 3.32
2344 6576 5.105063 TCGAATTGTTTGAACATGCAACAA 58.895 33.333 12.73 12.73 38.95 2.83
2345 6577 4.676546 TCGAATTGTTTGAACATGCAACA 58.323 34.783 0.00 0.00 38.95 3.33
2346 6578 5.441872 CGATCGAATTGTTTGAACATGCAAC 60.442 40.000 10.26 0.00 38.95 4.17
2347 6579 4.616381 CGATCGAATTGTTTGAACATGCAA 59.384 37.500 10.26 0.00 38.95 4.08
2348 6580 4.157649 CGATCGAATTGTTTGAACATGCA 58.842 39.130 10.26 0.00 38.95 3.96
2349 6581 4.158384 ACGATCGAATTGTTTGAACATGC 58.842 39.130 24.34 0.00 38.95 4.06
2350 6582 5.281376 GTGACGATCGAATTGTTTGAACATG 59.719 40.000 24.34 0.00 38.95 3.21
2351 6583 5.382303 GTGACGATCGAATTGTTTGAACAT 58.618 37.500 24.34 0.00 38.95 2.71
2352 6584 4.607336 CGTGACGATCGAATTGTTTGAACA 60.607 41.667 24.34 0.00 37.08 3.18
2353 6585 3.833061 CGTGACGATCGAATTGTTTGAAC 59.167 43.478 24.34 3.67 0.00 3.18
2354 6586 3.736759 TCGTGACGATCGAATTGTTTGAA 59.263 39.130 24.34 0.00 34.36 2.69
2355 6587 3.310246 TCGTGACGATCGAATTGTTTGA 58.690 40.909 24.34 5.42 34.36 2.69
2356 6588 3.698420 TCGTGACGATCGAATTGTTTG 57.302 42.857 24.34 3.06 34.36 2.93
2357 6589 3.985279 TCTTCGTGACGATCGAATTGTTT 59.015 39.130 24.34 0.00 44.29 2.83
2358 6590 3.571571 TCTTCGTGACGATCGAATTGTT 58.428 40.909 24.34 0.00 44.29 2.83
2359 6591 3.211803 TCTTCGTGACGATCGAATTGT 57.788 42.857 24.34 0.00 44.29 2.71
2360 6592 4.561959 TTTCTTCGTGACGATCGAATTG 57.438 40.909 24.34 8.90 44.29 2.32
2361 6593 4.921515 TCTTTTCTTCGTGACGATCGAATT 59.078 37.500 24.34 0.00 44.29 2.17
2362 6594 4.482386 TCTTTTCTTCGTGACGATCGAAT 58.518 39.130 24.34 0.00 44.29 3.34
2363 6595 3.892522 TCTTTTCTTCGTGACGATCGAA 58.107 40.909 24.34 12.00 43.41 3.71
2364 6596 3.547649 TCTTTTCTTCGTGACGATCGA 57.452 42.857 24.34 5.93 35.23 3.59
2365 6597 4.624721 TTTCTTTTCTTCGTGACGATCG 57.375 40.909 14.88 14.88 35.23 3.69
2366 6598 6.189567 TGTTTTTCTTTTCTTCGTGACGATC 58.810 36.000 9.08 0.00 35.23 3.69
2367 6599 6.114221 TGTTTTTCTTTTCTTCGTGACGAT 57.886 33.333 9.08 0.00 35.23 3.73
2368 6600 5.533533 TGTTTTTCTTTTCTTCGTGACGA 57.466 34.783 2.39 2.39 0.00 4.20
2369 6601 5.963004 TCATGTTTTTCTTTTCTTCGTGACG 59.037 36.000 0.00 0.00 0.00 4.35
2370 6602 6.745450 TGTCATGTTTTTCTTTTCTTCGTGAC 59.255 34.615 0.00 0.00 39.36 3.67
2371 6603 6.745450 GTGTCATGTTTTTCTTTTCTTCGTGA 59.255 34.615 0.00 0.00 0.00 4.35
2372 6604 6.526325 TGTGTCATGTTTTTCTTTTCTTCGTG 59.474 34.615 0.00 0.00 0.00 4.35
2373 6605 6.616947 TGTGTCATGTTTTTCTTTTCTTCGT 58.383 32.000 0.00 0.00 0.00 3.85
2374 6606 7.504922 TTGTGTCATGTTTTTCTTTTCTTCG 57.495 32.000 0.00 0.00 0.00 3.79
2375 6607 8.382875 CCTTTGTGTCATGTTTTTCTTTTCTTC 58.617 33.333 0.00 0.00 0.00 2.87
2376 6608 8.093927 TCCTTTGTGTCATGTTTTTCTTTTCTT 58.906 29.630 0.00 0.00 0.00 2.52
2377 6609 7.610865 TCCTTTGTGTCATGTTTTTCTTTTCT 58.389 30.769 0.00 0.00 0.00 2.52
2378 6610 7.826260 TCCTTTGTGTCATGTTTTTCTTTTC 57.174 32.000 0.00 0.00 0.00 2.29
2379 6611 7.280652 CCATCCTTTGTGTCATGTTTTTCTTTT 59.719 33.333 0.00 0.00 0.00 2.27
2380 6612 6.762661 CCATCCTTTGTGTCATGTTTTTCTTT 59.237 34.615 0.00 0.00 0.00 2.52
2381 6613 6.098124 TCCATCCTTTGTGTCATGTTTTTCTT 59.902 34.615 0.00 0.00 0.00 2.52
2382 6614 5.598005 TCCATCCTTTGTGTCATGTTTTTCT 59.402 36.000 0.00 0.00 0.00 2.52
2383 6615 5.841810 TCCATCCTTTGTGTCATGTTTTTC 58.158 37.500 0.00 0.00 0.00 2.29
2384 6616 5.867903 TCCATCCTTTGTGTCATGTTTTT 57.132 34.783 0.00 0.00 0.00 1.94
2385 6617 5.867903 TTCCATCCTTTGTGTCATGTTTT 57.132 34.783 0.00 0.00 0.00 2.43
2386 6618 5.867903 TTTCCATCCTTTGTGTCATGTTT 57.132 34.783 0.00 0.00 0.00 2.83
2387 6619 5.363580 AGTTTTCCATCCTTTGTGTCATGTT 59.636 36.000 0.00 0.00 0.00 2.71
2388 6620 4.895297 AGTTTTCCATCCTTTGTGTCATGT 59.105 37.500 0.00 0.00 0.00 3.21
2389 6621 5.458041 AGTTTTCCATCCTTTGTGTCATG 57.542 39.130 0.00 0.00 0.00 3.07
2390 6622 6.306987 AGTAGTTTTCCATCCTTTGTGTCAT 58.693 36.000 0.00 0.00 0.00 3.06
2391 6623 5.690865 AGTAGTTTTCCATCCTTTGTGTCA 58.309 37.500 0.00 0.00 0.00 3.58
2392 6624 6.039382 ACAAGTAGTTTTCCATCCTTTGTGTC 59.961 38.462 0.00 0.00 0.00 3.67
2393 6625 5.891551 ACAAGTAGTTTTCCATCCTTTGTGT 59.108 36.000 0.00 0.00 0.00 3.72
2394 6626 6.391227 ACAAGTAGTTTTCCATCCTTTGTG 57.609 37.500 0.00 0.00 0.00 3.33
2395 6627 8.706322 AATACAAGTAGTTTTCCATCCTTTGT 57.294 30.769 0.00 0.00 0.00 2.83
2398 6630 9.802039 TGTTAATACAAGTAGTTTTCCATCCTT 57.198 29.630 0.00 0.00 0.00 3.36
2399 6631 9.227777 GTGTTAATACAAGTAGTTTTCCATCCT 57.772 33.333 0.00 0.00 35.69 3.24
2400 6632 9.005777 TGTGTTAATACAAGTAGTTTTCCATCC 57.994 33.333 2.12 0.00 35.69 3.51
2412 6644 9.965824 CCAAAAAGAGAATGTGTTAATACAAGT 57.034 29.630 9.23 0.59 35.69 3.16
2413 6645 9.410556 CCCAAAAAGAGAATGTGTTAATACAAG 57.589 33.333 9.23 0.00 35.69 3.16
2414 6646 8.919145 ACCCAAAAAGAGAATGTGTTAATACAA 58.081 29.630 9.23 0.00 35.69 2.41
2415 6647 8.472007 ACCCAAAAAGAGAATGTGTTAATACA 57.528 30.769 7.55 7.55 34.63 2.29
2416 6648 9.758651 AAACCCAAAAAGAGAATGTGTTAATAC 57.241 29.630 0.00 0.00 0.00 1.89
2418 6650 9.679661 AAAAACCCAAAAAGAGAATGTGTTAAT 57.320 25.926 0.00 0.00 0.00 1.40
2441 6673 3.800506 GCCTAGCGCTCGTCTAATAAAAA 59.199 43.478 16.34 0.00 0.00 1.94
2442 6674 3.378339 GCCTAGCGCTCGTCTAATAAAA 58.622 45.455 16.34 0.00 0.00 1.52
2443 6675 3.009301 GCCTAGCGCTCGTCTAATAAA 57.991 47.619 16.34 0.00 0.00 1.40
2444 6676 2.701073 GCCTAGCGCTCGTCTAATAA 57.299 50.000 16.34 0.00 0.00 1.40
2552 6784 2.787473 TCTCTTCATGCGGGTTTGAT 57.213 45.000 0.00 0.00 0.00 2.57
2579 6811 0.384353 GCGCACGACTGTCTTTTTCC 60.384 55.000 0.30 0.00 0.00 3.13
2580 6812 0.303493 TGCGCACGACTGTCTTTTTC 59.697 50.000 5.66 0.00 0.00 2.29
2581 6813 0.027586 GTGCGCACGACTGTCTTTTT 59.972 50.000 26.77 0.00 0.00 1.94
2618 6850 2.743928 GAGCAGGTGGCCGACAAG 60.744 66.667 0.00 0.00 46.50 3.16
2619 6851 4.680237 CGAGCAGGTGGCCGACAA 62.680 66.667 0.00 0.00 46.50 3.18
2659 6917 0.678048 GAAAGCATGGGAAGCCGACT 60.678 55.000 0.00 0.00 0.00 4.18
2744 7002 3.005539 ATGGTGAGCGGAGGCAGT 61.006 61.111 0.00 0.00 43.41 4.40
2746 7004 4.100084 CCATGGTGAGCGGAGGCA 62.100 66.667 2.57 0.00 43.41 4.75
2750 7008 4.783621 GCAGCCATGGTGAGCGGA 62.784 66.667 14.67 0.00 32.22 5.54
2774 7032 1.557099 ACCTGTCCATGTTCGAGCTA 58.443 50.000 0.00 0.00 0.00 3.32
2777 7035 1.726853 GGAACCTGTCCATGTTCGAG 58.273 55.000 8.64 0.00 46.97 4.04
2830 7088 2.721167 CGGAGATGAGGGAACGCCA 61.721 63.158 0.00 0.00 35.15 5.69
2865 7123 1.518056 CTGCACATGACGGGCAAGTT 61.518 55.000 0.00 0.00 37.06 2.66
2875 7133 8.077991 GCTATAGATTATTTTTGCTGCACATGA 58.922 33.333 0.00 0.00 0.00 3.07
2881 7139 8.633075 TTGTTGCTATAGATTATTTTTGCTGC 57.367 30.769 3.21 0.00 0.00 5.25
2925 7211 9.956640 ATTTTTGCTGGAACCATCATTTAATTA 57.043 25.926 0.00 0.00 0.00 1.40
2959 7245 0.169009 GCGAGTCATGGTTTTCTGCC 59.831 55.000 0.00 0.00 0.00 4.85
2973 7331 2.066262 CTACCGTTGTTGATTGCGAGT 58.934 47.619 0.00 0.00 0.00 4.18
2980 7338 6.569179 AAATTTGCTACTACCGTTGTTGAT 57.431 33.333 0.00 0.00 0.00 2.57
2981 7339 6.380095 AAAATTTGCTACTACCGTTGTTGA 57.620 33.333 0.00 0.00 0.00 3.18
2987 7345 5.761165 ACACAAAAATTTGCTACTACCGT 57.239 34.783 5.82 0.00 41.79 4.83
3016 7374 5.407407 TTTCACTGTTTTTGGCTTTGGTA 57.593 34.783 0.00 0.00 0.00 3.25
3018 7376 3.063861 GCTTTCACTGTTTTTGGCTTTGG 59.936 43.478 0.00 0.00 0.00 3.28
3036 7394 5.392919 GGTCCAGTTTTTGCATTTTTGCTTT 60.393 36.000 0.00 0.00 35.49 3.51
3068 7426 6.655003 TCTCGATTTTTGCTAGAACATCCTTT 59.345 34.615 0.00 0.00 0.00 3.11
3125 7483 6.644592 GCTACAAATGGTGTTTTGATTTGCTA 59.355 34.615 0.00 0.00 41.98 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.