Multiple sequence alignment - TraesCS1D01G206900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G206900 chr1D 100.000 7765 0 0 1 7765 293387480 293395244 0.000000e+00 14340.0
1 TraesCS1D01G206900 chr1D 86.842 190 19 6 3586 3772 314718609 314718795 2.840000e-49 207.0
2 TraesCS1D01G206900 chr1D 96.386 83 3 0 3501 3583 180855019 180854937 3.780000e-28 137.0
3 TraesCS1D01G206900 chr1B 95.755 5112 136 30 676 5744 394405597 394410670 0.000000e+00 8163.0
4 TraesCS1D01G206900 chr1B 97.604 1294 29 2 5767 7060 394410724 394412015 0.000000e+00 2217.0
5 TraesCS1D01G206900 chr1B 90.015 671 64 3 1 670 394400869 394401537 0.000000e+00 865.0
6 TraesCS1D01G206900 chr1B 89.277 429 32 5 7131 7547 394412041 394412467 6.900000e-145 525.0
7 TraesCS1D01G206900 chr1B 90.000 230 19 4 7537 7765 1558793 1558567 2.120000e-75 294.0
8 TraesCS1D01G206900 chr1B 85.714 203 15 8 3584 3772 424541475 424541273 1.320000e-47 202.0
9 TraesCS1D01G206900 chr1B 93.976 83 4 1 1807 1888 653736184 653736266 2.940000e-24 124.0
10 TraesCS1D01G206900 chr1B 91.566 83 6 1 1807 1888 653707318 653707400 6.370000e-21 113.0
11 TraesCS1D01G206900 chr1B 89.474 57 4 2 5732 5787 668281281 668281336 3.890000e-08 71.3
12 TraesCS1D01G206900 chr1A 92.299 5519 234 50 38 5464 365064069 365069488 0.000000e+00 7661.0
13 TraesCS1D01G206900 chr1A 96.235 1806 50 7 5744 7543 365069917 365071710 0.000000e+00 2942.0
14 TraesCS1D01G206900 chr1A 91.549 284 6 3 5461 5744 365069604 365069869 7.360000e-100 375.0
15 TraesCS1D01G206900 chr1A 93.119 218 13 2 7548 7765 98600830 98600615 1.260000e-82 318.0
16 TraesCS1D01G206900 chr1A 85.315 143 18 3 1535 1677 91112414 91112553 2.260000e-30 145.0
17 TraesCS1D01G206900 chr3D 94.444 216 12 0 7549 7764 177487846 177488061 4.490000e-87 333.0
18 TraesCS1D01G206900 chr3D 84.103 195 23 7 3584 3774 43282830 43283020 1.720000e-41 182.0
19 TraesCS1D01G206900 chr3D 86.014 143 18 2 1535 1677 57183986 57184126 1.350000e-32 152.0
20 TraesCS1D01G206900 chr3D 91.919 99 8 0 3485 3583 147832143 147832241 1.050000e-28 139.0
21 TraesCS1D01G206900 chr3D 100.000 30 0 0 4303 4332 585220874 585220903 1.000000e-03 56.5
22 TraesCS1D01G206900 chr6A 90.132 152 11 3 3628 3775 61027638 61027789 2.210000e-45 195.0
23 TraesCS1D01G206900 chr3A 84.103 195 23 7 3584 3774 55255098 55255288 1.720000e-41 182.0
24 TraesCS1D01G206900 chr3A 94.737 38 1 1 4303 4339 559528889 559528852 3.030000e-04 58.4
25 TraesCS1D01G206900 chr6D 83.673 196 26 6 3584 3775 411948209 411948016 6.190000e-41 180.0
26 TraesCS1D01G206900 chr6D 92.453 53 2 2 5733 5784 277651568 277651619 3.000000e-09 75.0
27 TraesCS1D01G206900 chr2D 83.684 190 28 3 3584 3771 12563761 12563949 8.010000e-40 176.0
28 TraesCS1D01G206900 chr2D 96.386 83 3 0 3501 3583 298287724 298287806 3.780000e-28 137.0
29 TraesCS1D01G206900 chr2D 97.778 45 0 1 5741 5784 114517615 114517659 8.350000e-10 76.8
30 TraesCS1D01G206900 chr4D 84.713 157 17 6 2365 2518 485522593 485522745 4.850000e-32 150.0
31 TraesCS1D01G206900 chr4B 84.416 154 23 1 2365 2518 619076971 619077123 4.850000e-32 150.0
32 TraesCS1D01G206900 chr4B 93.182 44 1 2 4303 4344 652818361 652818404 6.500000e-06 63.9
33 TraesCS1D01G206900 chr4B 100.000 30 0 0 4303 4332 139621242 139621271 1.000000e-03 56.5
34 TraesCS1D01G206900 chr4B 100.000 30 0 0 4303 4332 163804353 163804382 1.000000e-03 56.5
35 TraesCS1D01G206900 chr5A 83.766 154 24 1 2365 2518 666303301 666303453 2.260000e-30 145.0
36 TraesCS1D01G206900 chr5A 94.505 91 5 0 3493 3583 318830725 318830815 2.920000e-29 141.0
37 TraesCS1D01G206900 chr2A 96.429 84 3 0 3501 3584 371333337 371333420 1.050000e-28 139.0
38 TraesCS1D01G206900 chr2A 95.745 47 0 2 5741 5787 391897171 391897127 3.000000e-09 75.0
39 TraesCS1D01G206900 chr4A 95.349 86 4 0 3498 3583 45682689 45682774 3.780000e-28 137.0
40 TraesCS1D01G206900 chr3B 93.333 90 6 0 3494 3583 214549836 214549747 4.890000e-27 134.0
41 TraesCS1D01G206900 chr7D 94.231 52 1 2 5741 5790 506006996 506006945 2.320000e-10 78.7
42 TraesCS1D01G206900 chr2B 97.778 45 0 1 5741 5784 164901427 164901471 8.350000e-10 76.8
43 TraesCS1D01G206900 chr2B 89.286 56 4 2 5732 5786 74002874 74002928 1.400000e-07 69.4
44 TraesCS1D01G206900 chr6B 90.566 53 4 1 5752 5803 275935284 275935336 1.400000e-07 69.4
45 TraesCS1D01G206900 chr6B 94.872 39 1 1 4303 4340 628821834 628821872 8.410000e-05 60.2
46 TraesCS1D01G206900 chr5B 97.436 39 0 1 4303 4340 684095245 684095283 1.810000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G206900 chr1D 293387480 293395244 7764 False 14340.000000 14340 100.000 1 7765 1 chr1D.!!$F1 7764
1 TraesCS1D01G206900 chr1B 394405597 394412467 6870 False 3635.000000 8163 94.212 676 7547 3 chr1B.!!$F5 6871
2 TraesCS1D01G206900 chr1B 394400869 394401537 668 False 865.000000 865 90.015 1 670 1 chr1B.!!$F1 669
3 TraesCS1D01G206900 chr1A 365064069 365071710 7641 False 3659.333333 7661 93.361 38 7543 3 chr1A.!!$F2 7505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.036952 CCGCCGCCATAGATGAGAAT 60.037 55.000 0.00 0.00 0.00 2.40 F
220 221 0.107831 TGCGTGGTCTTTACTTGCCT 59.892 50.000 0.00 0.00 0.00 4.75 F
1047 1054 0.942884 GACGCCGACGGACTTTTCTT 60.943 55.000 20.50 0.00 46.04 2.52 F
2087 2109 0.662619 TGTTTCTGCACAAGGCTTCG 59.337 50.000 0.00 0.00 45.15 3.79 F
3370 3397 1.692519 AGTTTCGGCACTGTACTCCTT 59.307 47.619 0.00 0.00 0.00 3.36 F
3523 3555 1.747709 AAGCTTGATGCACTAGCCAG 58.252 50.000 15.04 0.00 45.62 4.85 F
4218 4281 1.473965 GGCAGACATGATCGGTGTGAT 60.474 52.381 15.74 0.71 41.06 3.06 F
4468 4566 0.535328 TGTTCGTTGGCCAAATCGGA 60.535 50.000 22.47 13.06 36.56 4.55 F
5269 5367 0.768221 TCACTGGTCCCTTTCAGGCT 60.768 55.000 0.00 0.00 35.47 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1047 1054 1.299648 CCATGAAGGAAGCGTGGGA 59.700 57.895 0.00 0.00 41.22 4.37 R
1325 1335 1.614241 CCCTGTAGACGAGGTTGGGG 61.614 65.000 0.00 0.00 0.00 4.96 R
2575 2597 1.179152 CATGGCCATCAGCACAAGAA 58.821 50.000 17.61 0.00 46.50 2.52 R
3607 3639 0.179056 ACACAGAGGGGACAACAACG 60.179 55.000 0.00 0.00 0.00 4.10 R
4195 4258 0.391528 CACCGATCATGTCTGCCACA 60.392 55.000 0.00 0.00 40.18 4.17 R
4449 4547 0.535328 TCCGATTTGGCCAACGAACA 60.535 50.000 25.34 9.54 37.80 3.18 R
5269 5367 2.649531 ACCCACATTTCGACCAAAGA 57.350 45.000 0.00 0.00 0.00 2.52 R
6227 6496 2.613026 TGTCTCGGAAAGCAAAGTCA 57.387 45.000 0.00 0.00 0.00 3.41 R
7121 7390 0.107654 GGAGTCACGAGGGGAAATGG 60.108 60.000 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.036952 CCGCCGCCATAGATGAGAAT 60.037 55.000 0.00 0.00 0.00 2.40
29 30 1.073964 CGCCGCCATAGATGAGAATG 58.926 55.000 0.00 0.00 0.00 2.67
58 59 0.862283 GAGGACGACGCGAGATTGTC 60.862 60.000 15.93 10.30 0.00 3.18
204 205 3.541093 ATGCCTGTTTGTGCGTGCG 62.541 57.895 0.00 0.00 0.00 5.34
219 220 0.237498 GTGCGTGGTCTTTACTTGCC 59.763 55.000 0.00 0.00 0.00 4.52
220 221 0.107831 TGCGTGGTCTTTACTTGCCT 59.892 50.000 0.00 0.00 0.00 4.75
238 239 2.935201 GCCTGACATCTCACATCAAGAC 59.065 50.000 0.00 0.00 0.00 3.01
301 302 4.037923 GGTGACAATGACTTTGATGTGGTT 59.962 41.667 7.99 0.00 38.76 3.67
312 313 5.009010 ACTTTGATGTGGTTGTGCTTCTTAG 59.991 40.000 0.00 0.00 0.00 2.18
318 319 3.617263 GTGGTTGTGCTTCTTAGGTATCG 59.383 47.826 0.00 0.00 0.00 2.92
325 326 2.030981 GCTTCTTAGGTATCGGTCTCGG 60.031 54.545 0.00 0.00 36.95 4.63
344 345 2.283529 GCTCCGAGGTGAAGACCCA 61.284 63.158 0.00 0.00 44.40 4.51
376 378 0.988832 AATAACCTGGCTTCGGTGGA 59.011 50.000 0.00 0.00 34.33 4.02
384 386 1.063492 TGGCTTCGGTGGATAGGTCTA 60.063 52.381 0.00 0.00 0.00 2.59
389 391 4.443034 GCTTCGGTGGATAGGTCTAACAAT 60.443 45.833 0.00 0.00 0.00 2.71
401 403 5.731591 AGGTCTAACAATAGTGGTGCTTAC 58.268 41.667 0.00 0.00 0.00 2.34
418 420 2.684001 TACGCATCGTTCCATTCCTT 57.316 45.000 0.00 0.00 41.54 3.36
600 604 6.238022 GGTGTCGTATGACTTTGCTATTAACC 60.238 42.308 15.91 7.28 45.70 2.85
610 614 7.279313 TGACTTTGCTATTAACCGGTCTTATTC 59.721 37.037 8.04 0.00 0.00 1.75
644 648 1.145156 CAGTGGTCGTTGTGGTGGA 59.855 57.895 0.00 0.00 0.00 4.02
665 669 7.362920 GGTGGACATCTTAGTTATGCAAACAAT 60.363 37.037 12.28 0.00 0.00 2.71
670 674 7.613801 ACATCTTAGTTATGCAAACAATGGGTA 59.386 33.333 12.28 0.00 0.00 3.69
672 676 7.995289 TCTTAGTTATGCAAACAATGGGTATG 58.005 34.615 12.28 0.00 0.00 2.39
673 677 5.596836 AGTTATGCAAACAATGGGTATGG 57.403 39.130 12.28 0.00 0.00 2.74
674 678 2.985957 ATGCAAACAATGGGTATGGC 57.014 45.000 0.00 0.00 0.00 4.40
792 799 4.444536 TGGGTGGTCGTATTATAACAAGC 58.555 43.478 0.00 0.00 0.00 4.01
797 804 5.743398 GTGGTCGTATTATAACAAGCGTGTA 59.257 40.000 5.50 0.00 36.80 2.90
848 855 4.194720 GACGCAGCCGACCGATCT 62.195 66.667 0.00 0.00 38.29 2.75
849 856 2.827190 ACGCAGCCGACCGATCTA 60.827 61.111 0.00 0.00 38.29 1.98
850 857 2.050895 CGCAGCCGACCGATCTAG 60.051 66.667 0.00 0.00 36.29 2.43
915 922 1.261238 AAAGAGCACGAGGAGGGAGG 61.261 60.000 0.00 0.00 0.00 4.30
1047 1054 0.942884 GACGCCGACGGACTTTTCTT 60.943 55.000 20.50 0.00 46.04 2.52
1252 1262 2.048127 GGTGCTCGCGGAGTTCTT 60.048 61.111 6.13 0.00 31.39 2.52
1452 1462 1.453379 TTCGCGGTAGGAGGGAGAG 60.453 63.158 6.13 0.00 32.22 3.20
1457 1467 2.279408 GTAGGAGGGAGAGGCCGT 59.721 66.667 0.00 0.00 37.63 5.68
1521 1531 2.368875 GGGGACATATGGTTCTGACGAT 59.631 50.000 7.80 0.00 0.00 3.73
1549 1559 2.231380 TGGTTTCCAGGAGGAGGCC 61.231 63.158 0.00 0.00 46.74 5.19
1691 1701 1.302832 CACTGTGAGTCCCCCAAGC 60.303 63.158 0.32 0.00 0.00 4.01
1760 1774 8.286097 GCTGTTTATTGATTCTATAGAACCTGC 58.714 37.037 17.35 8.12 36.80 4.85
1856 1870 1.970640 TCTGCACAAGGCTTCTACTCA 59.029 47.619 0.00 0.00 45.15 3.41
2087 2109 0.662619 TGTTTCTGCACAAGGCTTCG 59.337 50.000 0.00 0.00 45.15 3.79
2288 2310 9.491675 TTTGAGTTAAATACCGACAAGTAATGA 57.508 29.630 0.00 0.00 0.00 2.57
2291 2313 9.095065 GAGTTAAATACCGACAAGTAATGACAT 57.905 33.333 0.00 0.00 0.00 3.06
2428 2450 1.923204 GCGTCTGAGAGTTGCATACTG 59.077 52.381 6.31 0.00 37.17 2.74
2575 2597 8.641498 AGACTCTGTCAAACCAATGATTATTT 57.359 30.769 0.46 0.00 34.60 1.40
2637 2659 8.675888 GTTTCCAAGTTTAGATTTCGTTTTACG 58.324 33.333 0.00 0.00 44.19 3.18
2828 2854 4.577283 TGTTTACAACTTCACCAAGTAGGC 59.423 41.667 0.00 0.00 42.45 3.93
2839 2865 7.125811 ACTTCACCAAGTAGGCTTTATGAGATA 59.874 37.037 0.00 0.00 41.39 1.98
2869 2895 4.321452 GCATCCAACAGTTGAACATGTCAT 60.321 41.667 15.36 0.00 35.70 3.06
3289 3316 1.973281 CAAAGGCACCACCGATGCT 60.973 57.895 0.00 0.00 46.52 3.79
3300 3327 4.634004 CACCACCGATGCTTATTTGAGTTA 59.366 41.667 0.00 0.00 0.00 2.24
3370 3397 1.692519 AGTTTCGGCACTGTACTCCTT 59.307 47.619 0.00 0.00 0.00 3.36
3432 3462 9.296400 TGTAAGTTTCTTGTTAAGCATGTTTTC 57.704 29.630 0.00 0.00 0.00 2.29
3433 3463 9.516314 GTAAGTTTCTTGTTAAGCATGTTTTCT 57.484 29.630 0.00 0.00 0.00 2.52
3463 3493 7.482654 TCCGTCATATTCAGCTAAAGAAATG 57.517 36.000 0.00 0.00 0.00 2.32
3523 3555 1.747709 AAGCTTGATGCACTAGCCAG 58.252 50.000 15.04 0.00 45.62 4.85
3607 3639 6.313658 AGGCTTTCGCAATTTATCCAAAAATC 59.686 34.615 0.00 0.00 38.10 2.17
3655 3690 4.219507 CGAGCCATACCTGAGTCTATTCAT 59.780 45.833 0.00 0.00 0.00 2.57
3819 3861 5.824624 ACACCCATGCAGATTGAACTATAAG 59.175 40.000 0.00 0.00 0.00 1.73
4195 4258 1.956170 CGTGTCACTTGCCTCGCTT 60.956 57.895 0.65 0.00 0.00 4.68
4218 4281 1.473965 GGCAGACATGATCGGTGTGAT 60.474 52.381 15.74 0.71 41.06 3.06
4245 4308 7.201145 ACACTAAGTGTCAGTACAGTGTTTAG 58.799 38.462 16.74 3.37 43.92 1.85
4281 4350 3.178611 CCCTCACCCTATGCCCCC 61.179 72.222 0.00 0.00 0.00 5.40
4468 4566 0.535328 TGTTCGTTGGCCAAATCGGA 60.535 50.000 22.47 13.06 36.56 4.55
4488 4586 1.934589 TGAATAATCCCTGTGCGACG 58.065 50.000 0.00 0.00 0.00 5.12
4679 4777 4.709397 TGGTCATTTTGAACACCCATATCC 59.291 41.667 0.00 0.00 39.52 2.59
4715 4813 9.313118 GATCAACCCATTAAATATTGTTGGAAC 57.687 33.333 11.84 0.00 35.13 3.62
4793 4891 4.650972 ACCAAAGCCTATCACCAGTTAA 57.349 40.909 0.00 0.00 0.00 2.01
5088 5186 9.561069 TTCTTATGCTTCTTCTAGTTTTTGACT 57.439 29.630 0.00 0.00 42.55 3.41
5091 5189 9.998106 TTATGCTTCTTCTAGTTTTTGACTACT 57.002 29.630 0.00 0.00 39.86 2.57
5092 5190 7.948278 TGCTTCTTCTAGTTTTTGACTACTC 57.052 36.000 0.00 0.00 39.86 2.59
5093 5191 6.929606 TGCTTCTTCTAGTTTTTGACTACTCC 59.070 38.462 0.00 0.00 39.86 3.85
5257 5355 5.239525 GCTGTTCAGAAGTATTTTCACTGGT 59.760 40.000 3.84 0.00 0.00 4.00
5269 5367 0.768221 TCACTGGTCCCTTTCAGGCT 60.768 55.000 0.00 0.00 35.47 4.58
5620 5837 1.341482 TGGGCATATCTCCCGCAAAAA 60.341 47.619 5.37 0.00 46.92 1.94
5916 6185 2.814805 ATACAAAGCAGGTGCCATCT 57.185 45.000 0.00 0.00 43.38 2.90
6641 6910 9.412460 TCCATGAATGAAGAGCATATTAAACTT 57.588 29.630 0.00 0.00 35.78 2.66
6775 7044 3.520290 ATGCGATTGAAGGAACTCGTA 57.480 42.857 0.00 0.00 38.49 3.43
6818 7087 1.346068 GTAGTGCATTTTTGGGCCCAA 59.654 47.619 34.07 34.07 0.00 4.12
6976 7245 7.873719 AAATATTGGTTTGGATGTACATCGA 57.126 32.000 25.65 20.97 38.69 3.59
6978 7247 3.973206 TGGTTTGGATGTACATCGACT 57.027 42.857 25.65 0.00 38.69 4.18
6979 7248 3.857052 TGGTTTGGATGTACATCGACTC 58.143 45.455 25.65 17.34 38.69 3.36
6980 7249 2.858344 GGTTTGGATGTACATCGACTCG 59.142 50.000 25.65 0.00 38.69 4.18
6981 7250 3.428452 GGTTTGGATGTACATCGACTCGA 60.428 47.826 25.65 11.63 41.13 4.04
6988 7257 2.856557 TGTACATCGACTCGAGAGTACG 59.143 50.000 25.85 17.55 45.37 3.67
7087 7356 2.977914 TGCCTGAAGAGCATAACTGTC 58.022 47.619 0.00 0.00 34.69 3.51
7117 7386 1.391485 GCACATGACACTGTCTAAGCG 59.609 52.381 10.54 0.00 33.15 4.68
7119 7388 1.618837 ACATGACACTGTCTAAGCGGT 59.381 47.619 10.54 0.00 33.15 5.68
7120 7389 2.823747 ACATGACACTGTCTAAGCGGTA 59.176 45.455 10.54 0.00 33.15 4.02
7121 7390 3.179830 CATGACACTGTCTAAGCGGTAC 58.820 50.000 10.54 0.00 33.15 3.34
7133 7403 1.523032 GCGGTACCATTTCCCCTCG 60.523 63.158 13.54 0.00 0.00 4.63
7172 7442 3.997021 CTCCAGACGCTTCAAGTTTGTAT 59.003 43.478 0.00 0.00 0.00 2.29
7411 7692 3.217626 GGAGGGGTGTCAATGATTCATC 58.782 50.000 0.00 0.00 0.00 2.92
7477 7759 4.338795 AGAACTCAGGTTAGAGGGATGA 57.661 45.455 0.00 0.00 39.97 2.92
7518 7800 1.002274 GGGAGGCAGGAGGAAGAGA 59.998 63.158 0.00 0.00 0.00 3.10
7528 7810 3.750652 CAGGAGGAAGAGAAAAAGACAGC 59.249 47.826 0.00 0.00 0.00 4.40
7534 7816 4.035208 GGAAGAGAAAAAGACAGCGACAAA 59.965 41.667 0.00 0.00 0.00 2.83
7547 7829 3.624861 CAGCGACAAAATGAAGCTAGGAT 59.375 43.478 0.00 0.00 33.65 3.24
7548 7830 4.095483 CAGCGACAAAATGAAGCTAGGATT 59.905 41.667 0.00 0.00 33.65 3.01
7549 7831 4.702131 AGCGACAAAATGAAGCTAGGATTT 59.298 37.500 0.00 0.00 33.65 2.17
7550 7832 5.183904 AGCGACAAAATGAAGCTAGGATTTT 59.816 36.000 0.00 0.00 33.65 1.82
7551 7833 5.863935 GCGACAAAATGAAGCTAGGATTTTT 59.136 36.000 7.27 0.00 28.93 1.94
7593 7875 8.484214 AGAGATAGTCTACCTTATGCATTCAA 57.516 34.615 3.54 0.00 31.71 2.69
7594 7876 8.928448 AGAGATAGTCTACCTTATGCATTCAAA 58.072 33.333 3.54 0.00 31.71 2.69
7595 7877 9.547753 GAGATAGTCTACCTTATGCATTCAAAA 57.452 33.333 3.54 0.00 0.00 2.44
7596 7878 9.331282 AGATAGTCTACCTTATGCATTCAAAAC 57.669 33.333 3.54 0.00 0.00 2.43
7597 7879 9.109393 GATAGTCTACCTTATGCATTCAAAACA 57.891 33.333 3.54 0.00 0.00 2.83
7598 7880 7.383102 AGTCTACCTTATGCATTCAAAACAG 57.617 36.000 3.54 0.00 0.00 3.16
7599 7881 6.375455 AGTCTACCTTATGCATTCAAAACAGG 59.625 38.462 3.54 2.20 0.00 4.00
7600 7882 4.806640 ACCTTATGCATTCAAAACAGGG 57.193 40.909 3.54 0.00 0.00 4.45
7601 7883 4.159557 ACCTTATGCATTCAAAACAGGGT 58.840 39.130 3.54 0.00 0.00 4.34
7602 7884 5.329399 ACCTTATGCATTCAAAACAGGGTA 58.671 37.500 3.54 0.00 0.00 3.69
7603 7885 5.777732 ACCTTATGCATTCAAAACAGGGTAA 59.222 36.000 3.54 0.00 0.00 2.85
7604 7886 6.268847 ACCTTATGCATTCAAAACAGGGTAAA 59.731 34.615 3.54 0.00 0.00 2.01
7605 7887 6.589907 CCTTATGCATTCAAAACAGGGTAAAC 59.410 38.462 3.54 0.00 0.00 2.01
7606 7888 4.329462 TGCATTCAAAACAGGGTAAACC 57.671 40.909 0.00 0.00 40.67 3.27
7619 7901 3.909776 GGTAAACCCGAAAGACCAAAG 57.090 47.619 0.00 0.00 0.00 2.77
7620 7902 2.555325 GGTAAACCCGAAAGACCAAAGG 59.445 50.000 0.00 0.00 0.00 3.11
7621 7903 1.037493 AAACCCGAAAGACCAAAGGC 58.963 50.000 0.00 0.00 0.00 4.35
7622 7904 0.826256 AACCCGAAAGACCAAAGGCC 60.826 55.000 0.00 0.00 0.00 5.19
7623 7905 2.332654 CCCGAAAGACCAAAGGCCG 61.333 63.158 0.00 0.00 0.00 6.13
7624 7906 1.302192 CCGAAAGACCAAAGGCCGA 60.302 57.895 0.00 0.00 0.00 5.54
7625 7907 0.676782 CCGAAAGACCAAAGGCCGAT 60.677 55.000 0.00 0.00 0.00 4.18
7626 7908 1.165270 CGAAAGACCAAAGGCCGATT 58.835 50.000 0.00 0.00 0.00 3.34
7627 7909 2.352388 CGAAAGACCAAAGGCCGATTA 58.648 47.619 0.00 0.00 0.00 1.75
7628 7910 2.943033 CGAAAGACCAAAGGCCGATTAT 59.057 45.455 0.00 0.00 0.00 1.28
7629 7911 4.124238 CGAAAGACCAAAGGCCGATTATA 58.876 43.478 0.00 0.00 0.00 0.98
7630 7912 4.755123 CGAAAGACCAAAGGCCGATTATAT 59.245 41.667 0.00 0.00 0.00 0.86
7631 7913 5.334105 CGAAAGACCAAAGGCCGATTATATG 60.334 44.000 0.00 0.00 0.00 1.78
7632 7914 4.974645 AGACCAAAGGCCGATTATATGA 57.025 40.909 0.00 0.00 0.00 2.15
7633 7915 5.304686 AGACCAAAGGCCGATTATATGAA 57.695 39.130 0.00 0.00 0.00 2.57
7634 7916 5.308825 AGACCAAAGGCCGATTATATGAAG 58.691 41.667 0.00 0.00 0.00 3.02
7635 7917 4.398319 ACCAAAGGCCGATTATATGAAGG 58.602 43.478 0.00 0.00 0.00 3.46
7636 7918 4.141251 ACCAAAGGCCGATTATATGAAGGT 60.141 41.667 0.00 0.00 0.00 3.50
7637 7919 4.216257 CCAAAGGCCGATTATATGAAGGTG 59.784 45.833 0.00 0.00 0.00 4.00
7638 7920 3.703001 AGGCCGATTATATGAAGGTGG 57.297 47.619 0.00 0.00 0.00 4.61
7639 7921 2.979678 AGGCCGATTATATGAAGGTGGT 59.020 45.455 0.00 0.00 0.00 4.16
7640 7922 3.074412 GGCCGATTATATGAAGGTGGTG 58.926 50.000 0.00 0.00 0.00 4.17
7641 7923 3.496160 GGCCGATTATATGAAGGTGGTGT 60.496 47.826 0.00 0.00 0.00 4.16
7642 7924 4.262721 GGCCGATTATATGAAGGTGGTGTA 60.263 45.833 0.00 0.00 0.00 2.90
7643 7925 5.302360 GCCGATTATATGAAGGTGGTGTAA 58.698 41.667 0.00 0.00 0.00 2.41
7644 7926 5.761234 GCCGATTATATGAAGGTGGTGTAAA 59.239 40.000 0.00 0.00 0.00 2.01
7645 7927 6.293244 GCCGATTATATGAAGGTGGTGTAAAC 60.293 42.308 0.00 0.00 0.00 2.01
7646 7928 6.073980 CCGATTATATGAAGGTGGTGTAAACG 60.074 42.308 0.00 0.00 0.00 3.60
7647 7929 6.477688 CGATTATATGAAGGTGGTGTAAACGT 59.522 38.462 0.00 0.00 0.00 3.99
7648 7930 6.971527 TTATATGAAGGTGGTGTAAACGTG 57.028 37.500 0.00 0.00 0.00 4.49
7649 7931 1.301423 TGAAGGTGGTGTAAACGTGC 58.699 50.000 0.00 0.00 0.00 5.34
7650 7932 1.301423 GAAGGTGGTGTAAACGTGCA 58.699 50.000 0.00 0.00 0.00 4.57
7651 7933 1.003223 GAAGGTGGTGTAAACGTGCAC 60.003 52.381 6.82 6.82 39.45 4.57
7652 7934 0.179468 AGGTGGTGTAAACGTGCACT 59.821 50.000 16.19 0.00 40.01 4.40
7653 7935 0.306533 GGTGGTGTAAACGTGCACTG 59.693 55.000 16.19 11.05 40.01 3.66
7654 7936 1.292061 GTGGTGTAAACGTGCACTGA 58.708 50.000 16.19 0.00 40.01 3.41
7655 7937 1.666700 GTGGTGTAAACGTGCACTGAA 59.333 47.619 16.19 0.00 40.01 3.02
7656 7938 2.096174 GTGGTGTAAACGTGCACTGAAA 59.904 45.455 16.19 0.00 40.01 2.69
7657 7939 2.353269 TGGTGTAAACGTGCACTGAAAG 59.647 45.455 16.19 0.68 40.01 2.62
7668 7950 2.960170 CTGAAAGTGCAGCAGGCC 59.040 61.111 0.00 0.00 43.89 5.19
7669 7951 1.900016 CTGAAAGTGCAGCAGGCCA 60.900 57.895 5.01 0.00 43.89 5.36
7670 7952 2.138656 CTGAAAGTGCAGCAGGCCAC 62.139 60.000 5.01 0.00 43.89 5.01
7671 7953 2.914097 AAAGTGCAGCAGGCCACC 60.914 61.111 5.01 0.00 43.89 4.61
7672 7954 3.736996 AAAGTGCAGCAGGCCACCA 62.737 57.895 5.01 0.00 43.89 4.17
7673 7955 4.962836 AGTGCAGCAGGCCACCAC 62.963 66.667 5.01 4.28 43.89 4.16
7677 7959 2.987547 CAGCAGGCCACCACCAAG 60.988 66.667 5.01 0.00 0.00 3.61
7678 7960 4.982701 AGCAGGCCACCACCAAGC 62.983 66.667 5.01 0.00 34.33 4.01
7682 7964 4.603535 GGCCACCACCAAGCCAGT 62.604 66.667 0.00 0.00 46.34 4.00
7683 7965 2.521708 GCCACCACCAAGCCAGTT 60.522 61.111 0.00 0.00 0.00 3.16
7684 7966 1.228429 GCCACCACCAAGCCAGTTA 60.228 57.895 0.00 0.00 0.00 2.24
7685 7967 1.244019 GCCACCACCAAGCCAGTTAG 61.244 60.000 0.00 0.00 0.00 2.34
7686 7968 0.400213 CCACCACCAAGCCAGTTAGA 59.600 55.000 0.00 0.00 0.00 2.10
7687 7969 1.202879 CCACCACCAAGCCAGTTAGAA 60.203 52.381 0.00 0.00 0.00 2.10
7688 7970 2.582052 CACCACCAAGCCAGTTAGAAA 58.418 47.619 0.00 0.00 0.00 2.52
7689 7971 2.554032 CACCACCAAGCCAGTTAGAAAG 59.446 50.000 0.00 0.00 0.00 2.62
7690 7972 2.441750 ACCACCAAGCCAGTTAGAAAGA 59.558 45.455 0.00 0.00 0.00 2.52
7691 7973 3.077359 CCACCAAGCCAGTTAGAAAGAG 58.923 50.000 0.00 0.00 0.00 2.85
7692 7974 3.077359 CACCAAGCCAGTTAGAAAGAGG 58.923 50.000 0.00 0.00 0.00 3.69
7693 7975 2.711547 ACCAAGCCAGTTAGAAAGAGGT 59.288 45.455 0.00 0.00 0.00 3.85
7694 7976 3.138468 ACCAAGCCAGTTAGAAAGAGGTT 59.862 43.478 0.00 0.00 0.00 3.50
7695 7977 4.349930 ACCAAGCCAGTTAGAAAGAGGTTA 59.650 41.667 0.00 0.00 0.00 2.85
7696 7978 4.695928 CCAAGCCAGTTAGAAAGAGGTTAC 59.304 45.833 0.00 0.00 0.00 2.50
7697 7979 5.305585 CAAGCCAGTTAGAAAGAGGTTACA 58.694 41.667 0.00 0.00 0.00 2.41
7698 7980 5.763876 AGCCAGTTAGAAAGAGGTTACAT 57.236 39.130 0.00 0.00 0.00 2.29
7699 7981 6.869206 AGCCAGTTAGAAAGAGGTTACATA 57.131 37.500 0.00 0.00 0.00 2.29
7700 7982 7.253905 AGCCAGTTAGAAAGAGGTTACATAA 57.746 36.000 0.00 0.00 0.00 1.90
7701 7983 7.331791 AGCCAGTTAGAAAGAGGTTACATAAG 58.668 38.462 0.00 0.00 0.00 1.73
7702 7984 6.539103 GCCAGTTAGAAAGAGGTTACATAAGG 59.461 42.308 0.00 0.00 0.00 2.69
7703 7985 6.539103 CCAGTTAGAAAGAGGTTACATAAGGC 59.461 42.308 0.00 0.00 0.00 4.35
7704 7986 6.255887 CAGTTAGAAAGAGGTTACATAAGGCG 59.744 42.308 0.00 0.00 0.00 5.52
7705 7987 4.138487 AGAAAGAGGTTACATAAGGCGG 57.862 45.455 0.00 0.00 0.00 6.13
7706 7988 3.773119 AGAAAGAGGTTACATAAGGCGGA 59.227 43.478 0.00 0.00 0.00 5.54
7707 7989 3.821421 AAGAGGTTACATAAGGCGGAG 57.179 47.619 0.00 0.00 0.00 4.63
7708 7990 2.040178 AGAGGTTACATAAGGCGGAGG 58.960 52.381 0.00 0.00 0.00 4.30
7709 7991 2.037144 GAGGTTACATAAGGCGGAGGA 58.963 52.381 0.00 0.00 0.00 3.71
7710 7992 2.036089 GAGGTTACATAAGGCGGAGGAG 59.964 54.545 0.00 0.00 0.00 3.69
7711 7993 1.070289 GGTTACATAAGGCGGAGGAGG 59.930 57.143 0.00 0.00 0.00 4.30
7712 7994 1.070289 GTTACATAAGGCGGAGGAGGG 59.930 57.143 0.00 0.00 0.00 4.30
7713 7995 0.471211 TACATAAGGCGGAGGAGGGG 60.471 60.000 0.00 0.00 0.00 4.79
7714 7996 1.766461 CATAAGGCGGAGGAGGGGT 60.766 63.158 0.00 0.00 0.00 4.95
7715 7997 1.004361 ATAAGGCGGAGGAGGGGTT 59.996 57.895 0.00 0.00 0.00 4.11
7716 7998 1.345715 ATAAGGCGGAGGAGGGGTTG 61.346 60.000 0.00 0.00 0.00 3.77
7721 8003 4.364686 GGAGGAGGGGTTGGGGGA 62.365 72.222 0.00 0.00 0.00 4.81
7722 8004 2.204244 GAGGAGGGGTTGGGGGAA 60.204 66.667 0.00 0.00 0.00 3.97
7723 8005 2.204306 AGGAGGGGTTGGGGGAAG 60.204 66.667 0.00 0.00 0.00 3.46
7724 8006 4.062032 GGAGGGGTTGGGGGAAGC 62.062 72.222 0.00 0.00 0.00 3.86
7725 8007 3.264845 GAGGGGTTGGGGGAAGCA 61.265 66.667 0.00 0.00 33.38 3.91
7726 8008 3.585525 GAGGGGTTGGGGGAAGCAC 62.586 68.421 0.00 0.00 35.53 4.40
7727 8009 3.590574 GGGGTTGGGGGAAGCACT 61.591 66.667 0.00 0.00 32.29 4.40
7728 8010 2.283173 GGGTTGGGGGAAGCACTG 60.283 66.667 0.00 0.00 33.38 3.66
7729 8011 2.991540 GGTTGGGGGAAGCACTGC 60.992 66.667 0.00 0.00 31.92 4.40
7730 8012 2.116125 GTTGGGGGAAGCACTGCT 59.884 61.111 0.00 0.00 42.56 4.24
7731 8013 1.378762 GTTGGGGGAAGCACTGCTA 59.621 57.895 3.33 0.00 38.25 3.49
7732 8014 0.678048 GTTGGGGGAAGCACTGCTAG 60.678 60.000 3.33 0.00 38.25 3.42
7733 8015 1.852157 TTGGGGGAAGCACTGCTAGG 61.852 60.000 3.33 0.00 38.25 3.02
7734 8016 2.592308 GGGGAAGCACTGCTAGGG 59.408 66.667 3.33 0.00 38.25 3.53
7735 8017 1.995626 GGGGAAGCACTGCTAGGGA 60.996 63.158 3.33 0.00 38.25 4.20
7736 8018 1.524482 GGGAAGCACTGCTAGGGAG 59.476 63.158 3.33 0.00 38.25 4.30
7737 8019 1.268283 GGGAAGCACTGCTAGGGAGT 61.268 60.000 3.33 0.00 38.25 3.85
7738 8020 0.615850 GGAAGCACTGCTAGGGAGTT 59.384 55.000 3.33 0.00 38.25 3.01
7739 8021 1.831736 GGAAGCACTGCTAGGGAGTTA 59.168 52.381 3.33 0.00 38.25 2.24
7740 8022 2.418884 GGAAGCACTGCTAGGGAGTTAC 60.419 54.545 3.33 0.00 38.25 2.50
7741 8023 1.938585 AGCACTGCTAGGGAGTTACA 58.061 50.000 0.21 0.00 36.99 2.41
7742 8024 2.257207 AGCACTGCTAGGGAGTTACAA 58.743 47.619 0.21 0.00 36.99 2.41
7743 8025 2.234908 AGCACTGCTAGGGAGTTACAAG 59.765 50.000 0.21 0.00 36.99 3.16
7744 8026 2.233922 GCACTGCTAGGGAGTTACAAGA 59.766 50.000 0.00 0.00 0.00 3.02
7745 8027 3.306780 GCACTGCTAGGGAGTTACAAGAA 60.307 47.826 0.00 0.00 0.00 2.52
7746 8028 4.802918 GCACTGCTAGGGAGTTACAAGAAA 60.803 45.833 0.00 0.00 0.00 2.52
7747 8029 4.932200 CACTGCTAGGGAGTTACAAGAAAG 59.068 45.833 0.00 0.00 0.00 2.62
7748 8030 4.593634 ACTGCTAGGGAGTTACAAGAAAGT 59.406 41.667 0.00 0.00 0.00 2.66
7749 8031 5.148651 TGCTAGGGAGTTACAAGAAAGTC 57.851 43.478 0.00 0.00 0.00 3.01
7750 8032 4.174762 GCTAGGGAGTTACAAGAAAGTCG 58.825 47.826 0.00 0.00 30.82 4.18
7751 8033 3.679824 AGGGAGTTACAAGAAAGTCGG 57.320 47.619 0.00 0.00 30.82 4.79
7752 8034 2.074576 GGGAGTTACAAGAAAGTCGGC 58.925 52.381 0.00 0.00 30.82 5.54
7753 8035 2.074576 GGAGTTACAAGAAAGTCGGCC 58.925 52.381 0.00 0.00 30.82 6.13
7754 8036 2.074576 GAGTTACAAGAAAGTCGGCCC 58.925 52.381 0.00 0.00 0.00 5.80
7755 8037 1.418637 AGTTACAAGAAAGTCGGCCCA 59.581 47.619 0.00 0.00 0.00 5.36
7756 8038 2.158726 AGTTACAAGAAAGTCGGCCCAA 60.159 45.455 0.00 0.00 0.00 4.12
7757 8039 1.886886 TACAAGAAAGTCGGCCCAAC 58.113 50.000 0.00 0.00 0.00 3.77
7758 8040 0.822121 ACAAGAAAGTCGGCCCAACC 60.822 55.000 0.00 0.00 0.00 3.77
7759 8041 0.537371 CAAGAAAGTCGGCCCAACCT 60.537 55.000 0.00 0.00 35.61 3.50
7760 8042 1.061546 AAGAAAGTCGGCCCAACCTA 58.938 50.000 0.00 0.00 35.61 3.08
7761 8043 1.061546 AGAAAGTCGGCCCAACCTAA 58.938 50.000 0.00 0.00 35.61 2.69
7762 8044 1.422402 AGAAAGTCGGCCCAACCTAAA 59.578 47.619 0.00 0.00 35.61 1.85
7763 8045 2.158579 AGAAAGTCGGCCCAACCTAAAA 60.159 45.455 0.00 0.00 35.61 1.52
7764 8046 2.597578 AAGTCGGCCCAACCTAAAAT 57.402 45.000 0.00 0.00 35.61 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.073964 CATTCTCATCTATGGCGGCG 58.926 55.000 0.51 0.51 0.00 6.46
12 13 3.055602 TCCATCATTCTCATCTATGGCGG 60.056 47.826 0.00 0.00 37.58 6.13
14 15 3.940221 GCTCCATCATTCTCATCTATGGC 59.060 47.826 0.00 0.00 37.58 4.40
28 29 0.461548 GTCGTCCTCATGCTCCATCA 59.538 55.000 0.00 0.00 0.00 3.07
29 30 0.596083 CGTCGTCCTCATGCTCCATC 60.596 60.000 0.00 0.00 0.00 3.51
58 59 1.428448 TCACAATTCAAGTCGCTCCG 58.572 50.000 0.00 0.00 0.00 4.63
204 205 2.846193 TGTCAGGCAAGTAAAGACCAC 58.154 47.619 0.00 0.00 0.00 4.16
219 220 4.818642 ACAGTCTTGATGTGAGATGTCAG 58.181 43.478 0.00 0.00 31.53 3.51
220 221 4.879197 ACAGTCTTGATGTGAGATGTCA 57.121 40.909 0.00 0.00 0.00 3.58
280 281 4.644234 ACAACCACATCAAAGTCATTGTCA 59.356 37.500 0.00 0.00 40.11 3.58
284 285 3.638160 AGCACAACCACATCAAAGTCATT 59.362 39.130 0.00 0.00 0.00 2.57
301 302 3.362706 AGACCGATACCTAAGAAGCACA 58.637 45.455 0.00 0.00 0.00 4.57
312 313 2.562876 GGAGCCCGAGACCGATACC 61.563 68.421 0.00 0.00 38.22 2.73
325 326 2.579738 GGTCTTCACCTCGGAGCC 59.420 66.667 0.00 0.00 40.00 4.70
344 345 4.222810 GCCAGGTTATTGATTTTCACCCTT 59.777 41.667 0.00 0.00 0.00 3.95
360 361 0.541863 CTATCCACCGAAGCCAGGTT 59.458 55.000 0.00 0.00 40.59 3.50
376 378 6.561519 AAGCACCACTATTGTTAGACCTAT 57.438 37.500 0.00 0.00 0.00 2.57
401 403 2.936498 ACTTAAGGAATGGAACGATGCG 59.064 45.455 7.53 0.00 0.00 4.73
418 420 9.396022 GAAATATTCTCCAACAGGAATGACTTA 57.604 33.333 0.00 0.00 34.52 2.24
600 604 4.750098 ACAGACACACAAAGAATAAGACCG 59.250 41.667 0.00 0.00 0.00 4.79
610 614 2.352651 CCACTGACACAGACACACAAAG 59.647 50.000 5.76 0.00 35.18 2.77
644 648 6.437162 ACCCATTGTTTGCATAACTAAGATGT 59.563 34.615 11.34 2.81 0.00 3.06
665 669 0.329931 AAACATGACGGCCATACCCA 59.670 50.000 2.24 0.00 33.31 4.51
670 674 2.092429 AGGATACAAACATGACGGCCAT 60.092 45.455 2.24 0.00 41.41 4.40
672 676 2.038387 AGGATACAAACATGACGGCC 57.962 50.000 0.00 0.00 41.41 6.13
673 677 4.270325 GTCTTAGGATACAAACATGACGGC 59.730 45.833 0.00 0.00 41.41 5.68
674 678 4.503007 CGTCTTAGGATACAAACATGACGG 59.497 45.833 0.00 0.00 40.33 4.79
797 804 2.463876 CGAGATGACGCACATGTGTAT 58.536 47.619 26.01 14.97 39.56 2.29
848 855 1.518774 GCGGACATTTCGGGACCTA 59.481 57.895 0.00 0.00 0.00 3.08
849 856 2.267961 GCGGACATTTCGGGACCT 59.732 61.111 0.00 0.00 0.00 3.85
850 857 3.192922 CGCGGACATTTCGGGACC 61.193 66.667 0.00 0.00 42.00 4.46
915 922 2.335011 GCTTTGGTCCCGTGTTGC 59.665 61.111 0.00 0.00 0.00 4.17
1047 1054 1.299648 CCATGAAGGAAGCGTGGGA 59.700 57.895 0.00 0.00 41.22 4.37
1237 1247 2.738521 GCAAGAACTCCGCGAGCA 60.739 61.111 8.23 0.00 32.04 4.26
1298 1308 2.831366 GCCGCTCTCCGACACGATA 61.831 63.158 0.00 0.00 40.02 2.92
1325 1335 1.614241 CCCTGTAGACGAGGTTGGGG 61.614 65.000 0.00 0.00 0.00 4.96
1452 1462 2.027625 CCACGAGTTCTTCACGGCC 61.028 63.158 0.00 0.00 34.65 6.13
1457 1467 2.285083 CACCAAACCACGAGTTCTTCA 58.715 47.619 0.00 0.00 37.88 3.02
1549 1559 4.305956 AGCTTGCCCACCCCCTTG 62.306 66.667 0.00 0.00 0.00 3.61
1777 1791 4.898829 TCCCATAATTCAGCGACATTTG 57.101 40.909 0.00 0.00 0.00 2.32
1778 1792 4.261741 GCATCCCATAATTCAGCGACATTT 60.262 41.667 0.00 0.00 0.00 2.32
1779 1793 3.254166 GCATCCCATAATTCAGCGACATT 59.746 43.478 0.00 0.00 0.00 2.71
2087 2109 2.111041 GCAAACAACTGCACTGAGTC 57.889 50.000 0.00 0.00 42.17 3.36
2288 2310 5.301045 CCCATTGAGCACAGATGATAAATGT 59.699 40.000 2.77 0.00 0.00 2.71
2291 2313 4.858850 ACCCATTGAGCACAGATGATAAA 58.141 39.130 7.50 0.00 0.00 1.40
2573 2595 1.702182 TGGCCATCAGCACAAGAAAA 58.298 45.000 0.00 0.00 46.50 2.29
2575 2597 1.179152 CATGGCCATCAGCACAAGAA 58.821 50.000 17.61 0.00 46.50 2.52
2659 2685 5.488645 ACATTTCCGTTTCTTGTTAACGT 57.511 34.783 0.26 0.00 45.01 3.99
2660 2686 6.085849 GCTAACATTTCCGTTTCTTGTTAACG 59.914 38.462 0.26 0.00 45.79 3.18
3087 3114 5.940470 GGAGTGGAGGATTGCGATAATAAAT 59.060 40.000 0.00 0.00 0.00 1.40
3096 3123 0.321564 TTGTGGAGTGGAGGATTGCG 60.322 55.000 0.00 0.00 0.00 4.85
3243 3270 7.692460 ACATCAATAATGCAGAAAAGACTCA 57.308 32.000 0.00 0.00 39.12 3.41
3300 3327 6.015603 CCTGCCTGAAAGAAAGAAAAGAAGAT 60.016 38.462 0.00 0.00 34.07 2.40
3370 3397 1.737029 CGCTTTCCGCTGAGAAGATCA 60.737 52.381 0.00 0.00 36.13 2.92
3432 3462 4.626042 AGCTGAATATGACGGAAGCTAAG 58.374 43.478 0.00 0.00 39.14 2.18
3433 3463 4.672587 AGCTGAATATGACGGAAGCTAA 57.327 40.909 0.00 0.00 39.14 3.09
3434 3464 5.784578 TTAGCTGAATATGACGGAAGCTA 57.215 39.130 0.00 0.00 41.11 3.32
3463 3493 6.261826 ACAAGTATCTCTGGCATAATTTCTGC 59.738 38.462 4.54 4.54 38.93 4.26
3523 3555 1.404035 AGTTCGGACTTTTGGTTGTGC 59.596 47.619 0.00 0.00 29.87 4.57
3607 3639 0.179056 ACACAGAGGGGACAACAACG 60.179 55.000 0.00 0.00 0.00 4.10
3844 3892 4.454504 GTGGATCCGTGAAAACTTGTACAT 59.545 41.667 7.39 0.00 0.00 2.29
3856 3904 0.762418 AAACCTGTGTGGATCCGTGA 59.238 50.000 7.39 0.00 39.71 4.35
3858 3906 1.420138 AGAAAACCTGTGTGGATCCGT 59.580 47.619 7.39 0.00 39.71 4.69
4195 4258 0.391528 CACCGATCATGTCTGCCACA 60.392 55.000 0.00 0.00 40.18 4.17
4225 4288 5.105064 ACCACTAAACACTGTACTGACACTT 60.105 40.000 6.77 0.00 0.00 3.16
4449 4547 0.535328 TCCGATTTGGCCAACGAACA 60.535 50.000 25.34 9.54 37.80 3.18
4468 4566 2.483876 CGTCGCACAGGGATTATTCAT 58.516 47.619 0.00 0.00 0.00 2.57
4488 4586 0.586802 GGTGCAGACGTTTTGAGACC 59.413 55.000 5.32 6.17 0.00 3.85
4679 4777 4.519540 AATGGGTTGATCAAGGTTTTCG 57.480 40.909 8.80 0.00 0.00 3.46
4715 4813 3.340814 AGTTGAGTAGGTTGCATGGAG 57.659 47.619 0.00 0.00 0.00 3.86
4793 4891 9.830975 TGTGCATACTAATGTATATTGTCTTGT 57.169 29.630 0.00 0.00 37.28 3.16
5089 5187 9.905713 TGCTAAAACATCTTAATTCATAGGAGT 57.094 29.630 0.00 0.00 0.00 3.85
5269 5367 2.649531 ACCCACATTTCGACCAAAGA 57.350 45.000 0.00 0.00 0.00 2.52
5376 5474 7.360113 AGTAATTGTTGGTCAAATCCTTGTT 57.640 32.000 0.00 0.00 39.62 2.83
5757 6022 5.021458 TCCCTCCGTCCCATAATATAAGAC 58.979 45.833 0.00 0.00 0.00 3.01
5916 6185 3.055458 TCGGAACTCCAAGCATCACATAA 60.055 43.478 0.00 0.00 35.14 1.90
6159 6428 3.126858 TCTTGGAACGATAACTGCAATGC 59.873 43.478 0.00 0.00 0.00 3.56
6227 6496 2.613026 TGTCTCGGAAAGCAAAGTCA 57.387 45.000 0.00 0.00 0.00 3.41
6641 6910 1.839994 GGGATGGATGTGACTTCTCCA 59.160 52.381 8.39 6.78 42.95 3.86
6775 7044 2.897271 TCACAGGTATGCCAAACCAT 57.103 45.000 1.54 0.00 39.64 3.55
6976 7245 0.803740 GCAGGAACGTACTCTCGAGT 59.196 55.000 13.13 4.81 45.02 4.18
6978 7247 1.085091 GAGCAGGAACGTACTCTCGA 58.915 55.000 0.00 0.00 34.70 4.04
6979 7248 0.803117 TGAGCAGGAACGTACTCTCG 59.197 55.000 0.00 0.00 0.00 4.04
6980 7249 2.685897 AGATGAGCAGGAACGTACTCTC 59.314 50.000 0.00 1.16 0.00 3.20
6981 7250 2.729194 AGATGAGCAGGAACGTACTCT 58.271 47.619 0.00 0.00 0.00 3.24
6988 7257 2.158696 AGCCCATAAGATGAGCAGGAAC 60.159 50.000 0.00 0.00 36.35 3.62
7016 7285 2.890808 TATGCAAGGACTCCACGATC 57.109 50.000 0.00 0.00 0.00 3.69
7087 7356 1.031235 TGTCATGTGCCAAACCTGTG 58.969 50.000 0.00 0.00 0.00 3.66
7117 7386 0.906775 TCACGAGGGGAAATGGTACC 59.093 55.000 4.43 4.43 0.00 3.34
7119 7388 1.829222 GAGTCACGAGGGGAAATGGTA 59.171 52.381 0.00 0.00 0.00 3.25
7120 7389 0.613777 GAGTCACGAGGGGAAATGGT 59.386 55.000 0.00 0.00 0.00 3.55
7121 7390 0.107654 GGAGTCACGAGGGGAAATGG 60.108 60.000 0.00 0.00 0.00 3.16
7133 7403 0.827368 GAGGGAGGTCATGGAGTCAC 59.173 60.000 0.00 0.00 0.00 3.67
7365 7646 1.236616 CGATGTTGCTGCCACCTCAA 61.237 55.000 9.20 0.00 0.00 3.02
7366 7647 1.672030 CGATGTTGCTGCCACCTCA 60.672 57.895 9.20 0.00 0.00 3.86
7411 7692 1.086696 CCATACTGCACCCGAAACAG 58.913 55.000 0.00 0.00 37.45 3.16
7477 7759 1.752694 GTATGGTGCCGCCCACAAT 60.753 57.895 3.03 3.77 46.50 2.71
7503 7785 2.982488 TCTTTTTCTCTTCCTCCTGCCT 59.018 45.455 0.00 0.00 0.00 4.75
7518 7800 4.504097 GCTTCATTTTGTCGCTGTCTTTTT 59.496 37.500 0.00 0.00 0.00 1.94
7567 7849 9.588096 TTGAATGCATAAGGTAGACTATCTCTA 57.412 33.333 0.00 0.00 0.00 2.43
7568 7850 8.484214 TTGAATGCATAAGGTAGACTATCTCT 57.516 34.615 0.00 0.00 0.00 3.10
7569 7851 9.547753 TTTTGAATGCATAAGGTAGACTATCTC 57.452 33.333 0.00 0.00 0.00 2.75
7570 7852 9.331282 GTTTTGAATGCATAAGGTAGACTATCT 57.669 33.333 0.00 0.00 0.00 1.98
7571 7853 9.109393 TGTTTTGAATGCATAAGGTAGACTATC 57.891 33.333 0.00 0.00 0.00 2.08
7572 7854 9.113838 CTGTTTTGAATGCATAAGGTAGACTAT 57.886 33.333 0.00 0.00 0.00 2.12
7573 7855 7.552687 CCTGTTTTGAATGCATAAGGTAGACTA 59.447 37.037 0.00 0.00 0.00 2.59
7574 7856 6.375455 CCTGTTTTGAATGCATAAGGTAGACT 59.625 38.462 0.00 0.00 0.00 3.24
7575 7857 6.404734 CCCTGTTTTGAATGCATAAGGTAGAC 60.405 42.308 0.00 0.00 0.00 2.59
7576 7858 5.652014 CCCTGTTTTGAATGCATAAGGTAGA 59.348 40.000 0.00 0.00 0.00 2.59
7577 7859 5.418840 ACCCTGTTTTGAATGCATAAGGTAG 59.581 40.000 0.00 0.00 0.00 3.18
7578 7860 5.329399 ACCCTGTTTTGAATGCATAAGGTA 58.671 37.500 0.00 0.00 0.00 3.08
7579 7861 4.159557 ACCCTGTTTTGAATGCATAAGGT 58.840 39.130 0.00 0.00 0.00 3.50
7580 7862 4.806640 ACCCTGTTTTGAATGCATAAGG 57.193 40.909 0.00 0.00 0.00 2.69
7581 7863 6.589907 GGTTTACCCTGTTTTGAATGCATAAG 59.410 38.462 0.00 0.00 0.00 1.73
7582 7864 6.459923 GGTTTACCCTGTTTTGAATGCATAA 58.540 36.000 0.00 0.00 0.00 1.90
7583 7865 6.031751 GGTTTACCCTGTTTTGAATGCATA 57.968 37.500 0.00 0.00 0.00 3.14
7584 7866 4.893608 GGTTTACCCTGTTTTGAATGCAT 58.106 39.130 0.00 0.00 0.00 3.96
7585 7867 4.329462 GGTTTACCCTGTTTTGAATGCA 57.671 40.909 0.00 0.00 0.00 3.96
7599 7881 2.555325 CCTTTGGTCTTTCGGGTTTACC 59.445 50.000 0.00 0.00 0.00 2.85
7600 7882 2.030540 GCCTTTGGTCTTTCGGGTTTAC 60.031 50.000 0.00 0.00 0.00 2.01
7601 7883 2.232399 GCCTTTGGTCTTTCGGGTTTA 58.768 47.619 0.00 0.00 0.00 2.01
7602 7884 1.037493 GCCTTTGGTCTTTCGGGTTT 58.963 50.000 0.00 0.00 0.00 3.27
7603 7885 0.826256 GGCCTTTGGTCTTTCGGGTT 60.826 55.000 0.00 0.00 0.00 4.11
7604 7886 1.228459 GGCCTTTGGTCTTTCGGGT 60.228 57.895 0.00 0.00 0.00 5.28
7605 7887 2.332654 CGGCCTTTGGTCTTTCGGG 61.333 63.158 0.00 0.00 0.00 5.14
7606 7888 0.676782 ATCGGCCTTTGGTCTTTCGG 60.677 55.000 0.00 0.00 0.00 4.30
7607 7889 1.165270 AATCGGCCTTTGGTCTTTCG 58.835 50.000 0.00 0.00 0.00 3.46
7608 7890 5.763204 TCATATAATCGGCCTTTGGTCTTTC 59.237 40.000 0.00 0.00 0.00 2.62
7609 7891 5.690865 TCATATAATCGGCCTTTGGTCTTT 58.309 37.500 0.00 0.00 0.00 2.52
7610 7892 5.304686 TCATATAATCGGCCTTTGGTCTT 57.695 39.130 0.00 0.00 0.00 3.01
7611 7893 4.974645 TCATATAATCGGCCTTTGGTCT 57.025 40.909 0.00 0.00 0.00 3.85
7612 7894 4.455877 CCTTCATATAATCGGCCTTTGGTC 59.544 45.833 0.00 0.00 0.00 4.02
7613 7895 4.141251 ACCTTCATATAATCGGCCTTTGGT 60.141 41.667 0.00 0.00 0.00 3.67
7614 7896 4.216257 CACCTTCATATAATCGGCCTTTGG 59.784 45.833 0.00 0.00 0.00 3.28
7615 7897 4.216257 CCACCTTCATATAATCGGCCTTTG 59.784 45.833 0.00 0.00 0.00 2.77
7616 7898 4.141251 ACCACCTTCATATAATCGGCCTTT 60.141 41.667 0.00 0.00 0.00 3.11
7617 7899 3.394606 ACCACCTTCATATAATCGGCCTT 59.605 43.478 0.00 0.00 0.00 4.35
7618 7900 2.979678 ACCACCTTCATATAATCGGCCT 59.020 45.455 0.00 0.00 0.00 5.19
7619 7901 3.074412 CACCACCTTCATATAATCGGCC 58.926 50.000 0.00 0.00 0.00 6.13
7620 7902 3.740115 ACACCACCTTCATATAATCGGC 58.260 45.455 0.00 0.00 0.00 5.54
7621 7903 6.073980 CGTTTACACCACCTTCATATAATCGG 60.074 42.308 0.00 0.00 0.00 4.18
7622 7904 6.477688 ACGTTTACACCACCTTCATATAATCG 59.522 38.462 0.00 0.00 0.00 3.34
7623 7905 7.627340 CACGTTTACACCACCTTCATATAATC 58.373 38.462 0.00 0.00 0.00 1.75
7624 7906 6.037830 GCACGTTTACACCACCTTCATATAAT 59.962 38.462 0.00 0.00 0.00 1.28
7625 7907 5.352016 GCACGTTTACACCACCTTCATATAA 59.648 40.000 0.00 0.00 0.00 0.98
7626 7908 4.871557 GCACGTTTACACCACCTTCATATA 59.128 41.667 0.00 0.00 0.00 0.86
7627 7909 3.687698 GCACGTTTACACCACCTTCATAT 59.312 43.478 0.00 0.00 0.00 1.78
7628 7910 3.068560 GCACGTTTACACCACCTTCATA 58.931 45.455 0.00 0.00 0.00 2.15
7629 7911 1.877443 GCACGTTTACACCACCTTCAT 59.123 47.619 0.00 0.00 0.00 2.57
7630 7912 1.301423 GCACGTTTACACCACCTTCA 58.699 50.000 0.00 0.00 0.00 3.02
7631 7913 1.003223 GTGCACGTTTACACCACCTTC 60.003 52.381 0.00 0.00 0.00 3.46
7632 7914 1.018910 GTGCACGTTTACACCACCTT 58.981 50.000 0.00 0.00 0.00 3.50
7633 7915 0.179468 AGTGCACGTTTACACCACCT 59.821 50.000 12.01 0.00 37.51 4.00
7634 7916 0.306533 CAGTGCACGTTTACACCACC 59.693 55.000 12.01 0.00 37.51 4.61
7635 7917 1.292061 TCAGTGCACGTTTACACCAC 58.708 50.000 12.01 0.28 37.51 4.16
7636 7918 2.025589 TTCAGTGCACGTTTACACCA 57.974 45.000 12.01 0.00 37.51 4.17
7637 7919 2.353579 ACTTTCAGTGCACGTTTACACC 59.646 45.455 12.01 0.00 37.51 4.16
7638 7920 3.350912 CACTTTCAGTGCACGTTTACAC 58.649 45.455 12.01 5.23 39.62 2.90
7639 7921 3.666883 CACTTTCAGTGCACGTTTACA 57.333 42.857 12.01 0.00 39.62 2.41
7650 7932 1.900498 GGCCTGCTGCACTTTCAGT 60.900 57.895 0.00 0.00 43.89 3.41
7651 7933 1.900016 TGGCCTGCTGCACTTTCAG 60.900 57.895 3.32 0.00 43.89 3.02
7652 7934 2.195411 TGGCCTGCTGCACTTTCA 59.805 55.556 3.32 0.00 43.89 2.69
7653 7935 2.647297 GTGGCCTGCTGCACTTTC 59.353 61.111 3.32 0.00 43.89 2.62
7654 7936 2.914097 GGTGGCCTGCTGCACTTT 60.914 61.111 3.32 0.00 43.89 2.66
7655 7937 4.208403 TGGTGGCCTGCTGCACTT 62.208 61.111 3.32 0.00 43.89 3.16
7656 7938 4.962836 GTGGTGGCCTGCTGCACT 62.963 66.667 3.32 0.00 43.89 4.40
7660 7942 2.987547 CTTGGTGGTGGCCTGCTG 60.988 66.667 3.32 0.00 0.00 4.41
7661 7943 4.982701 GCTTGGTGGTGGCCTGCT 62.983 66.667 3.32 0.00 0.00 4.24
7663 7945 4.601794 TGGCTTGGTGGTGGCCTG 62.602 66.667 3.32 0.00 45.45 4.85
7664 7946 4.290622 CTGGCTTGGTGGTGGCCT 62.291 66.667 3.32 0.00 45.45 5.19
7665 7947 2.706952 TAACTGGCTTGGTGGTGGCC 62.707 60.000 0.00 0.00 45.45 5.36
7666 7948 1.228429 TAACTGGCTTGGTGGTGGC 60.228 57.895 0.00 0.00 0.00 5.01
7667 7949 0.400213 TCTAACTGGCTTGGTGGTGG 59.600 55.000 0.00 0.00 0.00 4.61
7668 7950 2.270352 TTCTAACTGGCTTGGTGGTG 57.730 50.000 0.00 0.00 0.00 4.17
7669 7951 2.441750 TCTTTCTAACTGGCTTGGTGGT 59.558 45.455 0.00 0.00 0.00 4.16
7670 7952 3.077359 CTCTTTCTAACTGGCTTGGTGG 58.923 50.000 0.00 0.00 0.00 4.61
7671 7953 3.077359 CCTCTTTCTAACTGGCTTGGTG 58.923 50.000 0.00 0.00 0.00 4.17
7672 7954 2.711547 ACCTCTTTCTAACTGGCTTGGT 59.288 45.455 0.00 0.00 0.00 3.67
7673 7955 3.425162 ACCTCTTTCTAACTGGCTTGG 57.575 47.619 0.00 0.00 0.00 3.61
7674 7956 5.305585 TGTAACCTCTTTCTAACTGGCTTG 58.694 41.667 0.00 0.00 0.00 4.01
7675 7957 5.562298 TGTAACCTCTTTCTAACTGGCTT 57.438 39.130 0.00 0.00 0.00 4.35
7676 7958 5.763876 ATGTAACCTCTTTCTAACTGGCT 57.236 39.130 0.00 0.00 0.00 4.75
7677 7959 6.539103 CCTTATGTAACCTCTTTCTAACTGGC 59.461 42.308 0.00 0.00 0.00 4.85
7678 7960 6.539103 GCCTTATGTAACCTCTTTCTAACTGG 59.461 42.308 0.00 0.00 0.00 4.00
7679 7961 6.255887 CGCCTTATGTAACCTCTTTCTAACTG 59.744 42.308 0.00 0.00 0.00 3.16
7680 7962 6.338937 CGCCTTATGTAACCTCTTTCTAACT 58.661 40.000 0.00 0.00 0.00 2.24
7681 7963 5.522824 CCGCCTTATGTAACCTCTTTCTAAC 59.477 44.000 0.00 0.00 0.00 2.34
7682 7964 5.422970 TCCGCCTTATGTAACCTCTTTCTAA 59.577 40.000 0.00 0.00 0.00 2.10
7683 7965 4.957954 TCCGCCTTATGTAACCTCTTTCTA 59.042 41.667 0.00 0.00 0.00 2.10
7684 7966 3.773119 TCCGCCTTATGTAACCTCTTTCT 59.227 43.478 0.00 0.00 0.00 2.52
7685 7967 4.120589 CTCCGCCTTATGTAACCTCTTTC 58.879 47.826 0.00 0.00 0.00 2.62
7686 7968 3.118371 CCTCCGCCTTATGTAACCTCTTT 60.118 47.826 0.00 0.00 0.00 2.52
7687 7969 2.434702 CCTCCGCCTTATGTAACCTCTT 59.565 50.000 0.00 0.00 0.00 2.85
7688 7970 2.040178 CCTCCGCCTTATGTAACCTCT 58.960 52.381 0.00 0.00 0.00 3.69
7689 7971 2.036089 CTCCTCCGCCTTATGTAACCTC 59.964 54.545 0.00 0.00 0.00 3.85
7690 7972 2.040178 CTCCTCCGCCTTATGTAACCT 58.960 52.381 0.00 0.00 0.00 3.50
7691 7973 1.070289 CCTCCTCCGCCTTATGTAACC 59.930 57.143 0.00 0.00 0.00 2.85
7692 7974 1.070289 CCCTCCTCCGCCTTATGTAAC 59.930 57.143 0.00 0.00 0.00 2.50
7693 7975 1.420430 CCCTCCTCCGCCTTATGTAA 58.580 55.000 0.00 0.00 0.00 2.41
7694 7976 0.471211 CCCCTCCTCCGCCTTATGTA 60.471 60.000 0.00 0.00 0.00 2.29
7695 7977 1.766461 CCCCTCCTCCGCCTTATGT 60.766 63.158 0.00 0.00 0.00 2.29
7696 7978 1.345715 AACCCCTCCTCCGCCTTATG 61.346 60.000 0.00 0.00 0.00 1.90
7697 7979 1.004361 AACCCCTCCTCCGCCTTAT 59.996 57.895 0.00 0.00 0.00 1.73
7698 7980 1.993391 CAACCCCTCCTCCGCCTTA 60.993 63.158 0.00 0.00 0.00 2.69
7699 7981 3.330720 CAACCCCTCCTCCGCCTT 61.331 66.667 0.00 0.00 0.00 4.35
7704 7986 3.902927 TTCCCCCAACCCCTCCTCC 62.903 68.421 0.00 0.00 0.00 4.30
7705 7987 2.204244 TTCCCCCAACCCCTCCTC 60.204 66.667 0.00 0.00 0.00 3.71
7706 7988 2.204306 CTTCCCCCAACCCCTCCT 60.204 66.667 0.00 0.00 0.00 3.69
7707 7989 4.062032 GCTTCCCCCAACCCCTCC 62.062 72.222 0.00 0.00 0.00 4.30
7708 7990 3.264845 TGCTTCCCCCAACCCCTC 61.265 66.667 0.00 0.00 0.00 4.30
7709 7991 3.590574 GTGCTTCCCCCAACCCCT 61.591 66.667 0.00 0.00 0.00 4.79
7710 7992 3.590574 AGTGCTTCCCCCAACCCC 61.591 66.667 0.00 0.00 0.00 4.95
7711 7993 2.283173 CAGTGCTTCCCCCAACCC 60.283 66.667 0.00 0.00 0.00 4.11
7712 7994 2.137177 TAGCAGTGCTTCCCCCAACC 62.137 60.000 25.23 0.00 40.44 3.77
7713 7995 0.678048 CTAGCAGTGCTTCCCCCAAC 60.678 60.000 25.23 0.00 40.44 3.77
7714 7996 1.685224 CTAGCAGTGCTTCCCCCAA 59.315 57.895 25.23 1.57 40.44 4.12
7715 7997 2.300967 CCTAGCAGTGCTTCCCCCA 61.301 63.158 25.23 2.41 40.44 4.96
7716 7998 2.592308 CCTAGCAGTGCTTCCCCC 59.408 66.667 25.23 0.00 40.44 5.40
7717 7999 1.977293 CTCCCTAGCAGTGCTTCCCC 61.977 65.000 25.23 0.00 40.44 4.81
7718 8000 1.268283 ACTCCCTAGCAGTGCTTCCC 61.268 60.000 25.23 0.00 40.44 3.97
7719 8001 0.615850 AACTCCCTAGCAGTGCTTCC 59.384 55.000 25.23 0.00 40.44 3.46
7720 8002 2.233922 TGTAACTCCCTAGCAGTGCTTC 59.766 50.000 25.23 3.90 40.44 3.86
7721 8003 2.257207 TGTAACTCCCTAGCAGTGCTT 58.743 47.619 25.23 5.62 40.44 3.91
7722 8004 1.938585 TGTAACTCCCTAGCAGTGCT 58.061 50.000 23.44 23.44 43.41 4.40
7723 8005 2.233922 TCTTGTAACTCCCTAGCAGTGC 59.766 50.000 7.13 7.13 0.00 4.40
7724 8006 4.537135 TTCTTGTAACTCCCTAGCAGTG 57.463 45.455 0.00 0.00 0.00 3.66
7725 8007 4.593634 ACTTTCTTGTAACTCCCTAGCAGT 59.406 41.667 0.00 0.00 0.00 4.40
7726 8008 5.153950 ACTTTCTTGTAACTCCCTAGCAG 57.846 43.478 0.00 0.00 0.00 4.24
7727 8009 4.321750 CGACTTTCTTGTAACTCCCTAGCA 60.322 45.833 0.00 0.00 0.00 3.49
7728 8010 4.174762 CGACTTTCTTGTAACTCCCTAGC 58.825 47.826 0.00 0.00 0.00 3.42
7729 8011 4.745649 CCGACTTTCTTGTAACTCCCTAG 58.254 47.826 0.00 0.00 0.00 3.02
7730 8012 3.056322 GCCGACTTTCTTGTAACTCCCTA 60.056 47.826 0.00 0.00 0.00 3.53
7731 8013 2.289506 GCCGACTTTCTTGTAACTCCCT 60.290 50.000 0.00 0.00 0.00 4.20
7732 8014 2.074576 GCCGACTTTCTTGTAACTCCC 58.925 52.381 0.00 0.00 0.00 4.30
7733 8015 2.074576 GGCCGACTTTCTTGTAACTCC 58.925 52.381 0.00 0.00 0.00 3.85
7734 8016 2.074576 GGGCCGACTTTCTTGTAACTC 58.925 52.381 0.00 0.00 0.00 3.01
7735 8017 1.418637 TGGGCCGACTTTCTTGTAACT 59.581 47.619 0.00 0.00 0.00 2.24
7736 8018 1.886886 TGGGCCGACTTTCTTGTAAC 58.113 50.000 0.00 0.00 0.00 2.50
7737 8019 2.223745 GTTGGGCCGACTTTCTTGTAA 58.776 47.619 17.07 0.00 0.00 2.41
7738 8020 1.543871 GGTTGGGCCGACTTTCTTGTA 60.544 52.381 23.00 0.00 0.00 2.41
7739 8021 0.822121 GGTTGGGCCGACTTTCTTGT 60.822 55.000 23.00 0.00 0.00 3.16
7740 8022 0.537371 AGGTTGGGCCGACTTTCTTG 60.537 55.000 23.00 0.00 43.70 3.02
7741 8023 1.061546 TAGGTTGGGCCGACTTTCTT 58.938 50.000 23.00 7.15 43.70 2.52
7742 8024 1.061546 TTAGGTTGGGCCGACTTTCT 58.938 50.000 23.00 14.12 43.70 2.52
7743 8025 1.900245 TTTAGGTTGGGCCGACTTTC 58.100 50.000 23.00 7.19 43.70 2.62
7744 8026 2.368311 TTTTAGGTTGGGCCGACTTT 57.632 45.000 23.00 14.06 43.70 2.66
7745 8027 2.597578 ATTTTAGGTTGGGCCGACTT 57.402 45.000 23.00 18.45 43.70 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.