Multiple sequence alignment - TraesCS1D01G206600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G206600 chr1D 100.000 4662 0 0 1 4662 292525874 292530535 0.000000e+00 8610.0
1 TraesCS1D01G206600 chr1A 94.762 4372 199 19 11 4372 364631074 364635425 0.000000e+00 6778.0
2 TraesCS1D01G206600 chr1A 97.619 42 1 0 4382 4423 364635416 364635457 6.470000e-09 73.1
3 TraesCS1D01G206600 chr1B 96.327 3839 122 15 576 4403 393508496 393512326 0.000000e+00 6290.0
4 TraesCS1D01G206600 chr1B 88.057 561 61 4 11 569 393447209 393447765 0.000000e+00 660.0
5 TraesCS1D01G206600 chr5B 78.439 487 100 5 14 497 149581468 149580984 3.500000e-81 313.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G206600 chr1D 292525874 292530535 4661 False 8610.00 8610 100.0000 1 4662 1 chr1D.!!$F1 4661
1 TraesCS1D01G206600 chr1A 364631074 364635457 4383 False 3425.55 6778 96.1905 11 4423 2 chr1A.!!$F1 4412
2 TraesCS1D01G206600 chr1B 393508496 393512326 3830 False 6290.00 6290 96.3270 576 4403 1 chr1B.!!$F2 3827
3 TraesCS1D01G206600 chr1B 393447209 393447765 556 False 660.00 660 88.0570 11 569 1 chr1B.!!$F1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
625 638 0.179097 CCTCAGTCTAAAGCGCCTCC 60.179 60.0 2.29 0.0 0.00 4.30 F
1059 1076 0.320771 CCACGTTCTCCCACCTCTTG 60.321 60.0 0.00 0.0 0.00 3.02 F
2609 2626 0.177604 CAGAGTGAGGATGCCCAGAC 59.822 60.0 0.00 0.0 33.88 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1689 1706 1.227853 GAACAGCTCCAACCCACGT 60.228 57.895 0.00 0.0 0.00 4.49 R
2787 2804 1.283321 TGCATATACCCACACTTGGCA 59.717 47.619 0.00 0.0 42.35 4.92 R
4319 4342 0.040958 GTTGCGGCAAGAGTTCACTG 60.041 55.000 16.97 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.916989 AGAAGGGACCAGGTACAGAAAAT 59.083 43.478 3.49 0.00 0.00 1.82
71 72 1.202915 TGCATCTGGTGTGGTGAATGT 60.203 47.619 0.00 0.00 0.00 2.71
119 120 0.740149 TGCATCATGACCCAATTCGC 59.260 50.000 0.00 0.00 0.00 4.70
137 138 1.693083 GCGTGGAGCGTTGTATGGTC 61.693 60.000 0.00 0.00 43.66 4.02
156 157 1.596934 GGTGACGGGCTTCTCATGA 59.403 57.895 0.00 0.00 0.00 3.07
171 172 3.772572 TCTCATGAAATCCGAGTGGGTTA 59.227 43.478 0.00 0.00 37.72 2.85
278 279 8.182227 GTCACTATGGACCACTAAAAATAAAGC 58.818 37.037 0.00 0.00 0.00 3.51
287 290 9.343539 GACCACTAAAAATAAAGCCTGATAGAT 57.656 33.333 0.00 0.00 0.00 1.98
333 336 8.808529 CGGCTGATATACTATACAAATTAGTGC 58.191 37.037 0.00 0.00 0.00 4.40
350 353 2.086869 GTGCCTTTCTTGCAGCTATGA 58.913 47.619 0.00 0.00 39.87 2.15
353 356 3.573538 TGCCTTTCTTGCAGCTATGAAAA 59.426 39.130 0.00 0.00 34.05 2.29
372 375 0.183492 ACTTCTGGCAAAGGCACAGA 59.817 50.000 12.03 0.00 42.04 3.41
374 377 1.000938 CTTCTGGCAAAGGCACAGAAC 60.001 52.381 13.06 0.00 44.74 3.01
412 416 1.621301 CTGTCTCAAAGGTGCGAGCG 61.621 60.000 0.00 0.00 0.00 5.03
439 443 3.032609 GAGATGCGATGGCCGACG 61.033 66.667 15.41 15.41 41.76 5.12
459 463 4.028490 GGGGACATCACCGGCACA 62.028 66.667 0.00 0.00 0.00 4.57
461 465 2.746277 GGACATCACCGGCACACC 60.746 66.667 0.00 0.00 0.00 4.16
540 544 0.885879 CCGCTATGTATCCGCCTACA 59.114 55.000 0.00 0.00 36.14 2.74
550 554 4.461431 TGTATCCGCCTACAGGTATGTATG 59.539 45.833 0.00 0.00 41.05 2.39
569 573 2.200067 TGGCTTCGTTCGTTCGTTTTA 58.800 42.857 0.00 0.00 0.00 1.52
577 581 4.443725 TCGTTCGTTCGTTTTATGTTGCTA 59.556 37.500 0.00 0.00 0.00 3.49
625 638 0.179097 CCTCAGTCTAAAGCGCCTCC 60.179 60.000 2.29 0.00 0.00 4.30
632 645 3.514309 AGTCTAAAGCGCCTCCTTTCTTA 59.486 43.478 2.29 0.00 36.50 2.10
633 646 4.020485 AGTCTAAAGCGCCTCCTTTCTTAA 60.020 41.667 2.29 0.00 36.50 1.85
634 647 4.876679 GTCTAAAGCGCCTCCTTTCTTAAT 59.123 41.667 2.29 0.00 36.50 1.40
635 648 5.006844 GTCTAAAGCGCCTCCTTTCTTAATC 59.993 44.000 2.29 0.00 36.50 1.75
636 649 3.636153 AAGCGCCTCCTTTCTTAATCT 57.364 42.857 2.29 0.00 0.00 2.40
637 650 3.636153 AGCGCCTCCTTTCTTAATCTT 57.364 42.857 2.29 0.00 0.00 2.40
679 692 8.883731 CCCTGTGATGTACTTACTTTGATAAAG 58.116 37.037 0.00 0.05 44.10 1.85
722 737 5.636965 GCAGCATATACTCACATTCCACTAG 59.363 44.000 0.00 0.00 0.00 2.57
823 840 3.607370 AAAGAGCGTTCCGGGGAGC 62.607 63.158 0.00 4.54 0.00 4.70
847 864 2.110420 GGGAGCGGGTAAATCGGG 59.890 66.667 0.00 0.00 0.00 5.14
925 942 1.004918 CACGGTTCCACCACTCCTC 60.005 63.158 0.00 0.00 38.47 3.71
926 943 2.214920 ACGGTTCCACCACTCCTCC 61.215 63.158 0.00 0.00 38.47 4.30
927 944 2.214216 CGGTTCCACCACTCCTCCA 61.214 63.158 0.00 0.00 38.47 3.86
1059 1076 0.320771 CCACGTTCTCCCACCTCTTG 60.321 60.000 0.00 0.00 0.00 3.02
1328 1345 2.230750 TGTTTGATGCAATGCCGAATCA 59.769 40.909 1.53 2.44 0.00 2.57
1408 1425 2.144078 TCGGTGGCCCTGTTTCTGA 61.144 57.895 0.00 0.00 0.00 3.27
1414 1431 1.704628 TGGCCCTGTTTCTGAAGATGA 59.295 47.619 0.00 0.00 0.00 2.92
1644 1661 2.962882 CGAGAGGAACTGGGTCTCA 58.037 57.895 0.00 0.00 41.55 3.27
1689 1706 2.799978 CGTTCACAATGAGCAGTACACA 59.200 45.455 0.00 0.00 0.00 3.72
1731 1748 2.603021 GAGATGCAGAGGTCAGGGATA 58.397 52.381 0.00 0.00 0.00 2.59
2061 2078 1.599542 GATGCAGTCAGTTTATCGGGC 59.400 52.381 0.00 0.00 0.00 6.13
2097 2114 5.437060 TGTGCAGAGATTAAGGGGTATTTC 58.563 41.667 0.00 0.00 0.00 2.17
2144 2161 6.600882 AGCAATGAAATCAGGTTTTGAGAT 57.399 33.333 0.00 0.00 39.68 2.75
2301 2318 1.050988 ATGGGCGCTATGAGGACACT 61.051 55.000 7.64 0.00 0.00 3.55
2375 2392 5.962031 TCACATATGGTAGTGTCCTTAAGGT 59.038 40.000 21.04 4.49 37.07 3.50
2415 2432 4.714308 TCTTTGGAGTTTGGTTTGATGGTT 59.286 37.500 0.00 0.00 0.00 3.67
2532 2549 4.332268 GCTCAGAAACTCCATGACAGAATC 59.668 45.833 0.00 0.00 0.00 2.52
2609 2626 0.177604 CAGAGTGAGGATGCCCAGAC 59.822 60.000 0.00 0.00 33.88 3.51
2613 2630 1.064906 AGTGAGGATGCCCAGACAATG 60.065 52.381 0.00 0.00 33.88 2.82
2712 2729 2.771943 AGCTACCATTGAGATCGGGAAA 59.228 45.455 0.00 0.00 0.00 3.13
2736 2753 9.699410 AAACAGATCCATGGTCAGATAATTAAA 57.301 29.630 12.58 0.00 0.00 1.52
2787 2804 5.155161 TCCAGCACCCTTATAGACATGTAT 58.845 41.667 0.00 0.00 0.00 2.29
2802 2819 3.053693 ACATGTATGCCAAGTGTGGGTAT 60.054 43.478 0.00 0.00 46.09 2.73
2949 2966 1.075374 CAAAGGGAGGATGTGGTTCCA 59.925 52.381 0.00 0.00 38.32 3.53
2979 2996 2.770587 CTTTCGTTGCTGTGCTCCGC 62.771 60.000 0.00 0.00 0.00 5.54
2999 3016 1.808531 GCTTGCAGCCATGTTGGTCA 61.809 55.000 0.00 0.00 40.46 4.02
3041 3058 1.561076 CTTCCATCAGATGACCACCCA 59.439 52.381 12.41 0.00 0.00 4.51
3228 3245 1.900498 GGTGGCTGAACTTGCTGCT 60.900 57.895 0.00 0.00 33.78 4.24
3321 3338 2.178580 GGGAAATGGGCTGATGTTTCA 58.821 47.619 0.00 0.00 33.41 2.69
3324 3341 3.511146 GGAAATGGGCTGATGTTTCAAGA 59.489 43.478 0.00 0.00 33.41 3.02
3423 3440 6.044754 TGCATGGATTCCTTGTAGGAGATAAT 59.955 38.462 17.27 0.00 46.73 1.28
3433 3450 3.258372 TGTAGGAGATAATGTCCATCCGC 59.742 47.826 0.00 0.00 36.43 5.54
3694 3711 0.322975 GCTCAGGCAGGACTCTGAAA 59.677 55.000 0.00 0.00 43.49 2.69
3714 3731 0.523072 CTGTTTTCCCTGGCATGTCG 59.477 55.000 0.00 0.00 0.00 4.35
3715 3732 0.109532 TGTTTTCCCTGGCATGTCGA 59.890 50.000 0.00 0.00 0.00 4.20
3763 3780 8.042515 TGATCTCATGAGTGTATGAAATTCACA 58.957 33.333 21.92 0.00 45.72 3.58
3767 3784 8.164058 TCATGAGTGTATGAAATTCACAAACA 57.836 30.769 0.00 0.74 45.72 2.83
3804 3821 8.327941 ACTGGTGCACATATTTTGCTATATAG 57.672 34.615 20.43 5.30 40.86 1.31
3808 3825 9.166173 GGTGCACATATTTTGCTATATAGATGA 57.834 33.333 20.43 0.00 40.86 2.92
3809 3826 9.979270 GTGCACATATTTTGCTATATAGATGAC 57.021 33.333 13.17 6.02 40.86 3.06
3839 3856 2.610232 GGCAATTGTGATTGTTTCCGCT 60.610 45.455 7.40 0.00 43.67 5.52
3846 3863 9.086336 CAATTGTGATTGTTTCCGCTATTTATT 57.914 29.630 0.00 0.00 38.25 1.40
3875 3892 5.348627 ACAGGCTTGTATAAAGGCACTTGG 61.349 45.833 13.28 1.57 41.94 3.61
3953 3970 6.644248 ATTATAATTTGCTGCTGCTGATGA 57.356 33.333 17.00 4.45 40.48 2.92
3986 4003 2.586258 TCTGATTAGGTTGAGCGAGC 57.414 50.000 0.00 0.00 0.00 5.03
4045 4062 8.251026 CCGAGGATAGTATTTGATATGCTTGTA 58.749 37.037 0.00 0.00 32.25 2.41
4047 4064 8.988064 AGGATAGTATTTGATATGCTTGTACG 57.012 34.615 0.00 0.00 26.77 3.67
4116 4133 4.218312 ACTTTCCAGAAGATGCAAAGGTT 58.782 39.130 0.00 0.00 0.00 3.50
4147 4168 6.892691 GCATTATCCAGTGCTAAATGTACTC 58.107 40.000 0.00 0.00 39.61 2.59
4187 4209 4.260212 CCGGTTTAGTGCATCTGTATTTCG 60.260 45.833 0.00 0.00 0.00 3.46
4195 4217 9.974980 TTAGTGCATCTGTATTTCGTATCATTA 57.025 29.630 0.00 0.00 0.00 1.90
4271 4294 3.068165 TCTGGCTGTTCAGTATGGTATCG 59.932 47.826 1.78 0.00 36.16 2.92
4275 4298 4.430007 GCTGTTCAGTATGGTATCGTTGA 58.570 43.478 1.78 0.00 36.16 3.18
4285 4308 9.869757 CAGTATGGTATCGTTGATATTTCCATA 57.130 33.333 9.10 9.10 33.71 2.74
4351 4393 1.369625 CCGCAACCCTTCTGTCATAC 58.630 55.000 0.00 0.00 0.00 2.39
4362 4404 4.096382 CCTTCTGTCATACCCCAAATTTCG 59.904 45.833 0.00 0.00 0.00 3.46
4363 4405 4.295141 TCTGTCATACCCCAAATTTCGT 57.705 40.909 0.00 0.00 0.00 3.85
4364 4406 4.006989 TCTGTCATACCCCAAATTTCGTG 58.993 43.478 0.00 0.00 0.00 4.35
4365 4407 3.756434 CTGTCATACCCCAAATTTCGTGT 59.244 43.478 0.00 0.00 0.00 4.49
4366 4408 3.754323 TGTCATACCCCAAATTTCGTGTC 59.246 43.478 0.00 0.00 0.00 3.67
4367 4409 3.754323 GTCATACCCCAAATTTCGTGTCA 59.246 43.478 0.00 0.00 0.00 3.58
4368 4410 4.398044 GTCATACCCCAAATTTCGTGTCAT 59.602 41.667 0.00 0.00 0.00 3.06
4369 4411 5.587043 GTCATACCCCAAATTTCGTGTCATA 59.413 40.000 0.00 0.00 0.00 2.15
4370 4412 6.262273 GTCATACCCCAAATTTCGTGTCATAT 59.738 38.462 0.00 0.00 0.00 1.78
4371 4413 6.485313 TCATACCCCAAATTTCGTGTCATATC 59.515 38.462 0.00 0.00 0.00 1.63
4372 4414 3.951680 ACCCCAAATTTCGTGTCATATCC 59.048 43.478 0.00 0.00 0.00 2.59
4373 4415 3.317993 CCCCAAATTTCGTGTCATATCCC 59.682 47.826 0.00 0.00 0.00 3.85
4374 4416 3.951037 CCCAAATTTCGTGTCATATCCCA 59.049 43.478 0.00 0.00 0.00 4.37
4375 4417 4.400884 CCCAAATTTCGTGTCATATCCCAA 59.599 41.667 0.00 0.00 0.00 4.12
4376 4418 5.105554 CCCAAATTTCGTGTCATATCCCAAA 60.106 40.000 0.00 0.00 0.00 3.28
4377 4419 6.406849 CCCAAATTTCGTGTCATATCCCAAAT 60.407 38.462 0.00 0.00 0.00 2.32
4378 4420 7.041107 CCAAATTTCGTGTCATATCCCAAATT 58.959 34.615 0.00 0.00 0.00 1.82
4379 4421 7.222611 CCAAATTTCGTGTCATATCCCAAATTC 59.777 37.037 0.00 0.00 0.00 2.17
4380 4422 7.403312 AATTTCGTGTCATATCCCAAATTCA 57.597 32.000 0.00 0.00 0.00 2.57
4423 4465 8.670135 CATAGGTATTTCGATAGTAGTCTCCAG 58.330 40.741 0.00 0.00 37.40 3.86
4424 4466 6.839454 AGGTATTTCGATAGTAGTCTCCAGA 58.161 40.000 0.00 0.00 37.40 3.86
4425 4467 7.463431 AGGTATTTCGATAGTAGTCTCCAGAT 58.537 38.462 0.00 0.00 37.40 2.90
4426 4468 7.608761 AGGTATTTCGATAGTAGTCTCCAGATC 59.391 40.741 0.00 0.00 37.40 2.75
4427 4469 7.608761 GGTATTTCGATAGTAGTCTCCAGATCT 59.391 40.741 0.00 0.00 37.40 2.75
4428 4470 7.681939 ATTTCGATAGTAGTCTCCAGATCTC 57.318 40.000 0.00 0.00 37.40 2.75
4429 4471 5.155278 TCGATAGTAGTCTCCAGATCTCC 57.845 47.826 0.00 0.00 37.40 3.71
4430 4472 4.841813 TCGATAGTAGTCTCCAGATCTCCT 59.158 45.833 0.00 0.00 37.40 3.69
4431 4473 5.308497 TCGATAGTAGTCTCCAGATCTCCTT 59.692 44.000 0.00 0.00 37.40 3.36
4432 4474 5.642063 CGATAGTAGTCTCCAGATCTCCTTC 59.358 48.000 0.00 0.00 0.00 3.46
4433 4475 4.871871 AGTAGTCTCCAGATCTCCTTCA 57.128 45.455 0.00 0.00 0.00 3.02
4434 4476 5.199982 AGTAGTCTCCAGATCTCCTTCAA 57.800 43.478 0.00 0.00 0.00 2.69
4435 4477 5.200483 AGTAGTCTCCAGATCTCCTTCAAG 58.800 45.833 0.00 0.00 0.00 3.02
4436 4478 4.059773 AGTCTCCAGATCTCCTTCAAGT 57.940 45.455 0.00 0.00 0.00 3.16
4437 4479 4.424842 AGTCTCCAGATCTCCTTCAAGTT 58.575 43.478 0.00 0.00 0.00 2.66
4438 4480 4.843516 AGTCTCCAGATCTCCTTCAAGTTT 59.156 41.667 0.00 0.00 0.00 2.66
4439 4481 6.019748 AGTCTCCAGATCTCCTTCAAGTTTA 58.980 40.000 0.00 0.00 0.00 2.01
4440 4482 6.671779 AGTCTCCAGATCTCCTTCAAGTTTAT 59.328 38.462 0.00 0.00 0.00 1.40
4441 4483 6.760770 GTCTCCAGATCTCCTTCAAGTTTATG 59.239 42.308 0.00 0.00 0.00 1.90
4442 4484 5.431765 TCCAGATCTCCTTCAAGTTTATGC 58.568 41.667 0.00 0.00 0.00 3.14
4443 4485 4.272018 CCAGATCTCCTTCAAGTTTATGCG 59.728 45.833 0.00 0.00 0.00 4.73
4444 4486 4.872691 CAGATCTCCTTCAAGTTTATGCGT 59.127 41.667 0.00 0.00 0.00 5.24
4445 4487 4.872691 AGATCTCCTTCAAGTTTATGCGTG 59.127 41.667 0.00 0.00 0.00 5.34
4446 4488 3.334691 TCTCCTTCAAGTTTATGCGTGG 58.665 45.455 0.00 0.00 0.00 4.94
4447 4489 1.810151 TCCTTCAAGTTTATGCGTGGC 59.190 47.619 0.00 0.00 0.00 5.01
4448 4490 1.812571 CCTTCAAGTTTATGCGTGGCT 59.187 47.619 0.00 0.00 0.00 4.75
4449 4491 2.414559 CCTTCAAGTTTATGCGTGGCTG 60.415 50.000 0.00 0.00 0.00 4.85
4450 4492 0.521291 TCAAGTTTATGCGTGGCTGC 59.479 50.000 0.00 0.00 0.00 5.25
4451 4493 0.523072 CAAGTTTATGCGTGGCTGCT 59.477 50.000 0.00 0.00 35.36 4.24
4452 4494 1.068333 CAAGTTTATGCGTGGCTGCTT 60.068 47.619 0.00 0.72 35.36 3.91
4453 4495 1.247567 AGTTTATGCGTGGCTGCTTT 58.752 45.000 0.00 0.00 35.36 3.51
4454 4496 1.068333 AGTTTATGCGTGGCTGCTTTG 60.068 47.619 0.00 0.00 35.36 2.77
4455 4497 0.243365 TTTATGCGTGGCTGCTTTGG 59.757 50.000 0.00 0.00 35.36 3.28
4456 4498 2.211619 TTATGCGTGGCTGCTTTGGC 62.212 55.000 0.00 0.00 39.26 4.52
4463 4505 3.982241 GCTGCTTTGGCCAACGCT 61.982 61.111 37.38 0.00 36.64 5.07
4464 4506 2.256461 CTGCTTTGGCCAACGCTC 59.744 61.111 37.38 19.61 36.64 5.03
4465 4507 2.518112 TGCTTTGGCCAACGCTCA 60.518 55.556 37.38 22.21 36.64 4.26
4466 4508 2.256461 GCTTTGGCCAACGCTCAG 59.744 61.111 33.20 21.87 33.42 3.35
4467 4509 2.956987 CTTTGGCCAACGCTCAGG 59.043 61.111 20.35 0.00 34.44 3.86
4473 4515 4.711949 CCAACGCTCAGGCTGCCT 62.712 66.667 17.22 17.22 36.09 4.75
4485 4527 4.647654 CTGCCTGCAGCTTTGTTG 57.352 55.556 8.66 0.00 44.23 3.33
4486 4528 1.737816 CTGCCTGCAGCTTTGTTGT 59.262 52.632 8.66 0.00 44.23 3.32
4487 4529 0.596600 CTGCCTGCAGCTTTGTTGTG 60.597 55.000 8.66 0.00 44.23 3.33
4488 4530 1.300388 GCCTGCAGCTTTGTTGTGG 60.300 57.895 8.66 0.00 38.99 4.17
4489 4531 1.300388 CCTGCAGCTTTGTTGTGGC 60.300 57.895 8.66 0.00 0.00 5.01
4490 4532 1.737816 CTGCAGCTTTGTTGTGGCT 59.262 52.632 0.00 0.00 36.70 4.75
4493 4535 2.118132 CAGCTTTGTTGTGGCTGGT 58.882 52.632 6.31 0.00 46.51 4.00
4494 4536 1.317613 CAGCTTTGTTGTGGCTGGTA 58.682 50.000 6.31 0.00 46.51 3.25
4495 4537 1.267806 CAGCTTTGTTGTGGCTGGTAG 59.732 52.381 6.31 0.00 46.51 3.18
4496 4538 0.598065 GCTTTGTTGTGGCTGGTAGG 59.402 55.000 0.00 0.00 0.00 3.18
4497 4539 1.981256 CTTTGTTGTGGCTGGTAGGT 58.019 50.000 0.00 0.00 0.00 3.08
4498 4540 1.608590 CTTTGTTGTGGCTGGTAGGTG 59.391 52.381 0.00 0.00 0.00 4.00
4499 4541 0.179004 TTGTTGTGGCTGGTAGGTGG 60.179 55.000 0.00 0.00 0.00 4.61
4500 4542 1.303317 GTTGTGGCTGGTAGGTGGG 60.303 63.158 0.00 0.00 0.00 4.61
4501 4543 3.204467 TTGTGGCTGGTAGGTGGGC 62.204 63.158 0.00 0.00 0.00 5.36
4502 4544 4.426313 GTGGCTGGTAGGTGGGCC 62.426 72.222 0.00 0.00 44.31 5.80
4504 4546 4.115199 GGCTGGTAGGTGGGCCTG 62.115 72.222 4.53 0.00 46.47 4.85
4505 4547 4.803908 GCTGGTAGGTGGGCCTGC 62.804 72.222 4.53 0.00 46.47 4.85
4509 4551 4.803908 GTAGGTGGGCCTGCCAGC 62.804 72.222 17.55 9.75 46.47 4.85
4513 4555 3.766691 GTGGGCCTGCCAGCATTG 61.767 66.667 10.86 0.00 37.98 2.82
4514 4556 4.304413 TGGGCCTGCCAGCATTGT 62.304 61.111 10.86 0.00 37.98 2.71
4515 4557 2.999063 GGGCCTGCCAGCATTGTT 60.999 61.111 10.86 0.00 37.98 2.83
4516 4558 2.586293 GGGCCTGCCAGCATTGTTT 61.586 57.895 10.86 0.00 37.98 2.83
4517 4559 1.079612 GGCCTGCCAGCATTGTTTC 60.080 57.895 2.58 0.00 35.81 2.78
4518 4560 1.079612 GCCTGCCAGCATTGTTTCC 60.080 57.895 0.00 0.00 0.00 3.13
4519 4561 1.593265 CCTGCCAGCATTGTTTCCC 59.407 57.895 0.00 0.00 0.00 3.97
4520 4562 1.186917 CCTGCCAGCATTGTTTCCCA 61.187 55.000 0.00 0.00 0.00 4.37
4521 4563 0.899720 CTGCCAGCATTGTTTCCCAT 59.100 50.000 0.00 0.00 0.00 4.00
4522 4564 0.609151 TGCCAGCATTGTTTCCCATG 59.391 50.000 0.00 0.00 0.00 3.66
4523 4565 0.741927 GCCAGCATTGTTTCCCATGC 60.742 55.000 0.00 0.00 40.09 4.06
4527 4569 2.460757 GCATTGTTTCCCATGCTGTT 57.539 45.000 0.00 0.00 37.10 3.16
4528 4570 3.591196 GCATTGTTTCCCATGCTGTTA 57.409 42.857 0.00 0.00 37.10 2.41
4529 4571 3.253230 GCATTGTTTCCCATGCTGTTAC 58.747 45.455 0.00 0.00 37.10 2.50
4530 4572 3.056607 GCATTGTTTCCCATGCTGTTACT 60.057 43.478 0.00 0.00 37.10 2.24
4531 4573 4.487948 CATTGTTTCCCATGCTGTTACTG 58.512 43.478 0.00 0.00 0.00 2.74
4532 4574 2.513753 TGTTTCCCATGCTGTTACTGG 58.486 47.619 0.00 0.00 0.00 4.00
4533 4575 2.107378 TGTTTCCCATGCTGTTACTGGA 59.893 45.455 0.00 0.00 31.38 3.86
4534 4576 3.245229 TGTTTCCCATGCTGTTACTGGAT 60.245 43.478 0.00 0.00 31.38 3.41
4535 4577 2.715749 TCCCATGCTGTTACTGGATG 57.284 50.000 14.70 14.70 32.76 3.51
4536 4578 1.212688 TCCCATGCTGTTACTGGATGG 59.787 52.381 27.04 27.04 45.58 3.51
4537 4579 1.064463 CCCATGCTGTTACTGGATGGT 60.064 52.381 29.62 0.00 44.94 3.55
4538 4580 2.621407 CCCATGCTGTTACTGGATGGTT 60.621 50.000 29.62 0.00 44.94 3.67
4539 4581 2.424601 CCATGCTGTTACTGGATGGTTG 59.575 50.000 26.16 8.66 42.82 3.77
4540 4582 2.198827 TGCTGTTACTGGATGGTTGG 57.801 50.000 0.00 0.00 0.00 3.77
4541 4583 1.423541 TGCTGTTACTGGATGGTTGGT 59.576 47.619 0.00 0.00 0.00 3.67
4542 4584 1.812571 GCTGTTACTGGATGGTTGGTG 59.187 52.381 0.00 0.00 0.00 4.17
4543 4585 2.436417 CTGTTACTGGATGGTTGGTGG 58.564 52.381 0.00 0.00 0.00 4.61
4544 4586 1.074727 TGTTACTGGATGGTTGGTGGG 59.925 52.381 0.00 0.00 0.00 4.61
4545 4587 0.701731 TTACTGGATGGTTGGTGGGG 59.298 55.000 0.00 0.00 0.00 4.96
4546 4588 1.858739 TACTGGATGGTTGGTGGGGC 61.859 60.000 0.00 0.00 0.00 5.80
4547 4589 3.188903 TGGATGGTTGGTGGGGCA 61.189 61.111 0.00 0.00 0.00 5.36
4548 4590 2.364160 GGATGGTTGGTGGGGCAT 59.636 61.111 0.00 0.00 0.00 4.40
4549 4591 1.306056 GGATGGTTGGTGGGGCATT 60.306 57.895 0.00 0.00 0.00 3.56
4550 4592 0.909133 GGATGGTTGGTGGGGCATTT 60.909 55.000 0.00 0.00 0.00 2.32
4551 4593 0.249955 GATGGTTGGTGGGGCATTTG 59.750 55.000 0.00 0.00 0.00 2.32
4552 4594 1.840224 ATGGTTGGTGGGGCATTTGC 61.840 55.000 0.00 0.00 41.14 3.68
4553 4595 2.216331 GGTTGGTGGGGCATTTGCT 61.216 57.895 2.12 0.00 41.70 3.91
4554 4596 0.902516 GGTTGGTGGGGCATTTGCTA 60.903 55.000 2.12 0.00 41.70 3.49
4555 4597 0.532115 GTTGGTGGGGCATTTGCTAG 59.468 55.000 2.12 0.00 41.70 3.42
4556 4598 1.257055 TTGGTGGGGCATTTGCTAGC 61.257 55.000 8.10 8.10 41.70 3.42
4557 4599 1.380380 GGTGGGGCATTTGCTAGCT 60.380 57.895 17.23 0.00 41.70 3.32
4558 4600 1.669999 GGTGGGGCATTTGCTAGCTG 61.670 60.000 17.23 7.21 41.70 4.24
4559 4601 2.053865 TGGGGCATTTGCTAGCTGC 61.054 57.895 17.23 17.00 41.70 5.25
4560 4602 2.410469 GGGCATTTGCTAGCTGCG 59.590 61.111 17.23 3.01 46.63 5.18
4561 4603 2.409870 GGGCATTTGCTAGCTGCGT 61.410 57.895 17.23 0.00 46.63 5.24
4562 4604 1.226491 GGCATTTGCTAGCTGCGTG 60.226 57.895 17.23 10.45 46.63 5.34
4563 4605 1.503542 GCATTTGCTAGCTGCGTGT 59.496 52.632 17.23 0.00 46.63 4.49
4564 4606 0.795735 GCATTTGCTAGCTGCGTGTG 60.796 55.000 17.23 7.40 46.63 3.82
4565 4607 0.518636 CATTTGCTAGCTGCGTGTGT 59.481 50.000 17.23 0.00 46.63 3.72
4566 4608 0.518636 ATTTGCTAGCTGCGTGTGTG 59.481 50.000 17.23 0.00 46.63 3.82
4567 4609 0.531753 TTTGCTAGCTGCGTGTGTGA 60.532 50.000 17.23 0.00 46.63 3.58
4568 4610 0.945743 TTGCTAGCTGCGTGTGTGAG 60.946 55.000 17.23 0.00 46.63 3.51
4569 4611 1.373497 GCTAGCTGCGTGTGTGAGT 60.373 57.895 7.70 0.00 0.00 3.41
4570 4612 1.621301 GCTAGCTGCGTGTGTGAGTG 61.621 60.000 7.70 0.00 0.00 3.51
4571 4613 1.621301 CTAGCTGCGTGTGTGAGTGC 61.621 60.000 0.00 0.00 0.00 4.40
4572 4614 4.360027 GCTGCGTGTGTGAGTGCG 62.360 66.667 0.00 0.00 0.00 5.34
4573 4615 2.961721 CTGCGTGTGTGAGTGCGT 60.962 61.111 0.00 0.00 0.00 5.24
4574 4616 2.510464 TGCGTGTGTGAGTGCGTT 60.510 55.556 0.00 0.00 0.00 4.84
4575 4617 2.053116 GCGTGTGTGAGTGCGTTG 60.053 61.111 0.00 0.00 0.00 4.10
4576 4618 2.521771 GCGTGTGTGAGTGCGTTGA 61.522 57.895 0.00 0.00 0.00 3.18
4577 4619 1.831389 GCGTGTGTGAGTGCGTTGAT 61.831 55.000 0.00 0.00 0.00 2.57
4578 4620 0.581529 CGTGTGTGAGTGCGTTGATT 59.418 50.000 0.00 0.00 0.00 2.57
4579 4621 1.790043 CGTGTGTGAGTGCGTTGATTA 59.210 47.619 0.00 0.00 0.00 1.75
4580 4622 2.159973 CGTGTGTGAGTGCGTTGATTAG 60.160 50.000 0.00 0.00 0.00 1.73
4581 4623 1.798223 TGTGTGAGTGCGTTGATTAGC 59.202 47.619 0.00 0.00 0.00 3.09
4582 4624 2.069273 GTGTGAGTGCGTTGATTAGCT 58.931 47.619 0.00 0.00 0.00 3.32
4583 4625 2.068519 TGTGAGTGCGTTGATTAGCTG 58.931 47.619 0.00 0.00 0.00 4.24
4584 4626 1.394917 GTGAGTGCGTTGATTAGCTGG 59.605 52.381 0.00 0.00 0.00 4.85
4585 4627 1.001974 TGAGTGCGTTGATTAGCTGGT 59.998 47.619 0.00 0.00 0.00 4.00
4586 4628 2.076863 GAGTGCGTTGATTAGCTGGTT 58.923 47.619 0.00 0.00 0.00 3.67
4587 4629 1.806542 AGTGCGTTGATTAGCTGGTTG 59.193 47.619 0.00 0.00 0.00 3.77
4588 4630 1.135689 GTGCGTTGATTAGCTGGTTGG 60.136 52.381 0.00 0.00 0.00 3.77
4589 4631 0.451783 GCGTTGATTAGCTGGTTGGG 59.548 55.000 0.00 0.00 0.00 4.12
4590 4632 1.821216 CGTTGATTAGCTGGTTGGGT 58.179 50.000 0.00 0.00 0.00 4.51
4591 4633 1.468520 CGTTGATTAGCTGGTTGGGTG 59.531 52.381 0.00 0.00 0.00 4.61
4592 4634 1.202348 GTTGATTAGCTGGTTGGGTGC 59.798 52.381 0.00 0.00 0.00 5.01
4593 4635 0.676466 TGATTAGCTGGTTGGGTGCG 60.676 55.000 0.00 0.00 0.00 5.34
4594 4636 1.376609 GATTAGCTGGTTGGGTGCGG 61.377 60.000 0.00 0.00 0.00 5.69
4595 4637 2.137177 ATTAGCTGGTTGGGTGCGGT 62.137 55.000 0.00 0.00 0.00 5.68
4596 4638 2.346284 TTAGCTGGTTGGGTGCGGTT 62.346 55.000 0.00 0.00 0.00 4.44
4597 4639 1.481901 TAGCTGGTTGGGTGCGGTTA 61.482 55.000 0.00 0.00 0.00 2.85
4598 4640 2.622962 GCTGGTTGGGTGCGGTTAC 61.623 63.158 0.00 0.00 0.00 2.50
4599 4641 1.072505 CTGGTTGGGTGCGGTTACT 59.927 57.895 0.00 0.00 0.00 2.24
4600 4642 0.953960 CTGGTTGGGTGCGGTTACTC 60.954 60.000 0.00 0.00 0.00 2.59
4601 4643 1.071814 GGTTGGGTGCGGTTACTCA 59.928 57.895 0.00 0.00 0.00 3.41
4602 4644 0.535553 GGTTGGGTGCGGTTACTCAA 60.536 55.000 0.00 0.00 38.65 3.02
4603 4645 1.310904 GTTGGGTGCGGTTACTCAAA 58.689 50.000 0.00 0.00 42.27 2.69
4604 4646 1.677052 GTTGGGTGCGGTTACTCAAAA 59.323 47.619 0.00 0.00 42.27 2.44
4605 4647 2.054232 TGGGTGCGGTTACTCAAAAA 57.946 45.000 0.00 0.00 0.00 1.94
4625 4667 2.914908 AAAAAGCTGGTTGGGTGCT 58.085 47.368 0.00 0.00 38.87 4.40
4626 4668 0.465287 AAAAAGCTGGTTGGGTGCTG 59.535 50.000 0.00 0.00 37.11 4.41
4627 4669 1.402107 AAAAGCTGGTTGGGTGCTGG 61.402 55.000 0.00 0.00 37.11 4.85
4628 4670 4.982701 AGCTGGTTGGGTGCTGGC 62.983 66.667 0.00 0.00 35.54 4.85
4630 4672 2.987547 CTGGTTGGGTGCTGGCAG 60.988 66.667 10.94 10.94 0.00 4.85
4631 4673 3.496309 CTGGTTGGGTGCTGGCAGA 62.496 63.158 20.86 0.00 0.00 4.26
4632 4674 2.036256 GGTTGGGTGCTGGCAGAT 59.964 61.111 20.86 0.00 0.00 2.90
4633 4675 1.607467 GGTTGGGTGCTGGCAGATT 60.607 57.895 20.86 0.00 0.00 2.40
4634 4676 1.187567 GGTTGGGTGCTGGCAGATTT 61.188 55.000 20.86 0.00 0.00 2.17
4635 4677 0.681175 GTTGGGTGCTGGCAGATTTT 59.319 50.000 20.86 0.00 0.00 1.82
4636 4678 0.968405 TTGGGTGCTGGCAGATTTTC 59.032 50.000 20.86 0.00 0.00 2.29
4637 4679 0.112995 TGGGTGCTGGCAGATTTTCT 59.887 50.000 20.86 0.00 0.00 2.52
4638 4680 0.529378 GGGTGCTGGCAGATTTTCTG 59.471 55.000 20.86 0.08 46.90 3.02
4639 4681 0.529378 GGTGCTGGCAGATTTTCTGG 59.471 55.000 20.86 0.00 44.43 3.86
4640 4682 1.538047 GTGCTGGCAGATTTTCTGGA 58.462 50.000 20.86 0.00 44.43 3.86
4641 4683 1.471684 GTGCTGGCAGATTTTCTGGAG 59.528 52.381 20.86 0.00 44.43 3.86
4642 4684 0.455005 GCTGGCAGATTTTCTGGAGC 59.545 55.000 20.86 0.00 44.43 4.70
4643 4685 1.101331 CTGGCAGATTTTCTGGAGCC 58.899 55.000 9.42 0.00 44.43 4.70
4644 4686 0.700564 TGGCAGATTTTCTGGAGCCT 59.299 50.000 6.64 0.00 44.43 4.58
4645 4687 1.101331 GGCAGATTTTCTGGAGCCTG 58.899 55.000 6.64 0.00 44.43 4.85
4646 4688 1.615384 GGCAGATTTTCTGGAGCCTGT 60.615 52.381 6.64 0.00 44.43 4.00
4647 4689 1.471684 GCAGATTTTCTGGAGCCTGTG 59.528 52.381 6.64 0.00 44.43 3.66
4648 4690 2.089980 CAGATTTTCTGGAGCCTGTGG 58.910 52.381 0.00 0.00 40.71 4.17
4649 4691 1.707427 AGATTTTCTGGAGCCTGTGGT 59.293 47.619 0.00 0.00 0.00 4.16
4650 4692 1.815003 GATTTTCTGGAGCCTGTGGTG 59.185 52.381 0.00 0.00 0.00 4.17
4651 4693 0.843309 TTTTCTGGAGCCTGTGGTGA 59.157 50.000 0.00 0.00 0.00 4.02
4652 4694 0.397941 TTTCTGGAGCCTGTGGTGAG 59.602 55.000 0.00 0.00 0.00 3.51
4653 4695 1.483595 TTCTGGAGCCTGTGGTGAGG 61.484 60.000 0.00 0.00 36.03 3.86
4654 4696 2.122413 TGGAGCCTGTGGTGAGGT 60.122 61.111 0.00 0.00 35.29 3.85
4655 4697 2.177594 CTGGAGCCTGTGGTGAGGTC 62.178 65.000 0.00 0.00 35.29 3.85
4656 4698 2.665603 GAGCCTGTGGTGAGGTCC 59.334 66.667 0.00 0.00 35.29 4.46
4657 4699 1.915769 GAGCCTGTGGTGAGGTCCT 60.916 63.158 0.00 0.00 35.29 3.85
4658 4700 1.462238 AGCCTGTGGTGAGGTCCTT 60.462 57.895 0.00 0.00 35.29 3.36
4659 4701 1.062488 AGCCTGTGGTGAGGTCCTTT 61.062 55.000 0.00 0.00 35.29 3.11
4660 4702 0.890996 GCCTGTGGTGAGGTCCTTTG 60.891 60.000 0.00 0.00 35.29 2.77
4661 4703 0.890996 CCTGTGGTGAGGTCCTTTGC 60.891 60.000 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.974383 ACCTGGTCCCTTCTGTTACG 59.026 55.000 0.00 0.00 0.00 3.18
2 3 3.170717 CTGTACCTGGTCCCTTCTGTTA 58.829 50.000 0.63 0.00 0.00 2.41
6 7 2.715763 TTCTGTACCTGGTCCCTTCT 57.284 50.000 0.63 0.00 0.00 2.85
7 8 3.782656 TTTTCTGTACCTGGTCCCTTC 57.217 47.619 0.63 0.00 0.00 3.46
8 9 3.655777 TCATTTTCTGTACCTGGTCCCTT 59.344 43.478 0.63 0.00 0.00 3.95
9 10 3.256704 TCATTTTCTGTACCTGGTCCCT 58.743 45.455 0.63 0.00 0.00 4.20
46 47 3.760738 TCACCACACCAGATGCATTTAA 58.239 40.909 0.00 0.00 0.00 1.52
47 48 3.431673 TCACCACACCAGATGCATTTA 57.568 42.857 0.00 0.00 0.00 1.40
71 72 4.743057 AAGGATGTGATCACGATCTTCA 57.257 40.909 24.65 9.39 38.60 3.02
97 98 2.350102 CGAATTGGGTCATGATGCATCG 60.350 50.000 21.34 8.64 0.00 3.84
133 134 3.998672 GAAGCCCGTCACCGACCA 61.999 66.667 0.00 0.00 35.63 4.02
137 138 1.811266 CATGAGAAGCCCGTCACCG 60.811 63.158 0.00 0.00 0.00 4.94
149 150 2.187958 ACCCACTCGGATTTCATGAGA 58.812 47.619 0.00 0.00 33.93 3.27
171 172 3.622166 ACCAACCGATAAAACTCCGAT 57.378 42.857 0.00 0.00 0.00 4.18
217 218 4.227300 ACCAAAACCTAGCTATGTGATCCA 59.773 41.667 2.15 0.00 0.00 3.41
267 268 9.342308 CTGTCCATCTATCAGGCTTTATTTTTA 57.658 33.333 0.00 0.00 0.00 1.52
273 274 5.425217 TGAACTGTCCATCTATCAGGCTTTA 59.575 40.000 0.00 0.00 34.02 1.85
274 275 4.225942 TGAACTGTCCATCTATCAGGCTTT 59.774 41.667 0.00 0.00 34.02 3.51
277 278 3.827008 TGAACTGTCCATCTATCAGGC 57.173 47.619 0.00 0.00 34.02 4.85
278 279 5.541953 TGATGAACTGTCCATCTATCAGG 57.458 43.478 8.50 0.00 40.65 3.86
287 290 2.715046 GGATGCTTGATGAACTGTCCA 58.285 47.619 0.00 0.00 0.00 4.02
329 332 2.089980 CATAGCTGCAAGAAAGGCACT 58.910 47.619 1.02 0.00 36.02 4.40
333 336 5.382618 AGTTTTCATAGCTGCAAGAAAGG 57.617 39.130 1.02 0.00 34.07 3.11
350 353 1.830477 TGTGCCTTTGCCAGAAGTTTT 59.170 42.857 0.00 0.00 36.33 2.43
353 356 0.183492 TCTGTGCCTTTGCCAGAAGT 59.817 50.000 0.00 0.00 39.93 3.01
372 375 1.956170 CTTGCACGCGTCCTCTGTT 60.956 57.895 9.86 0.00 0.00 3.16
374 377 1.664649 TTCTTGCACGCGTCCTCTG 60.665 57.895 9.86 0.00 0.00 3.35
412 416 0.179089 ATCGCATCTCAGTGCACCTC 60.179 55.000 14.63 0.00 45.30 3.85
421 425 2.106938 GTCGGCCATCGCATCTCA 59.893 61.111 2.24 0.00 39.05 3.27
431 435 3.968837 ATGTCCCCTACGTCGGCCA 62.969 63.158 2.24 0.00 0.00 5.36
439 443 2.363975 TGCCGGTGATGTCCCCTAC 61.364 63.158 1.90 0.00 0.00 3.18
476 480 4.669318 CGAAACAGTAAAGGCTATCGAGA 58.331 43.478 0.00 0.00 0.00 4.04
540 544 2.429610 ACGAACGAAGCCATACATACCT 59.570 45.455 0.14 0.00 0.00 3.08
550 554 2.928295 TAAAACGAACGAACGAAGCC 57.072 45.000 11.97 0.00 37.03 4.35
577 581 1.321474 CACCAACATGTCCAGCAAGT 58.679 50.000 0.00 0.00 0.00 3.16
644 657 5.615925 AGTACATCACAGGGAAATACCTC 57.384 43.478 0.00 0.00 39.34 3.85
679 692 4.500477 GCTGCAACATGAAAATATTCGGAC 59.500 41.667 0.00 0.00 38.46 4.79
749 766 5.009610 GGTTCTACAGATTGCACAGGAAAAA 59.990 40.000 0.00 0.00 0.00 1.94
823 840 2.515996 TTTACCCGCTCCCGCTCAAG 62.516 60.000 0.00 0.00 0.00 3.02
847 864 1.004440 AGAAAGAGGCTGGTCGTGC 60.004 57.895 0.00 0.00 0.00 5.34
941 958 0.991146 TGTGCTAATGGCTGGAAGGA 59.009 50.000 0.00 0.00 42.39 3.36
1328 1345 1.623311 TGTTCCATGACACGACATCCT 59.377 47.619 0.00 0.00 0.00 3.24
1408 1425 1.261480 ACACCAGAGCGAGTCATCTT 58.739 50.000 0.00 0.00 0.00 2.40
1414 1431 2.031163 GGCAACACCAGAGCGAGT 59.969 61.111 0.00 0.00 38.86 4.18
1689 1706 1.227853 GAACAGCTCCAACCCACGT 60.228 57.895 0.00 0.00 0.00 4.49
1746 1763 4.826274 TCTAAAGACACTGGCATAAGCT 57.174 40.909 0.00 0.00 41.70 3.74
1779 1796 3.341823 ACCAGTGCTCAGACATGATTTC 58.658 45.455 0.00 0.00 34.12 2.17
2097 2114 2.154462 CAGTGGACTTGTAGCCCTTTG 58.846 52.381 0.00 0.00 0.00 2.77
2301 2318 7.475015 GCAGCATCTCATTAAAATGAACTACA 58.525 34.615 6.82 0.00 44.20 2.74
2375 2392 5.049167 CCAAAGATTGTAAAGCTGCACAAA 58.951 37.500 15.15 2.66 45.10 2.83
2415 2432 5.248248 TCCTGACTTGATAACCTTGTCATGA 59.752 40.000 0.00 0.00 37.10 3.07
2532 2549 2.357637 TGAAACAAGTTCTTGCTTCCCG 59.642 45.455 19.27 0.00 37.13 5.14
2613 2630 8.200792 AGTCCAATATCTAACATCTGTGAGAAC 58.799 37.037 1.51 0.00 38.92 3.01
2712 2729 8.274322 TGTTTAATTATCTGACCATGGATCTGT 58.726 33.333 21.47 3.81 0.00 3.41
2787 2804 1.283321 TGCATATACCCACACTTGGCA 59.717 47.619 0.00 0.00 42.35 4.92
2802 2819 5.089970 ACATTAGCAGTGAGTCTTGCATA 57.910 39.130 18.23 8.87 0.00 3.14
2999 3016 3.377253 AACAACATCCATCATCCAGCT 57.623 42.857 0.00 0.00 0.00 4.24
3041 3058 3.945285 CAGTTGTGGTTCCAGTTTGTAGT 59.055 43.478 0.00 0.00 0.00 2.73
3228 3245 4.141711 GGATCCAGTAGTAGAACATTGCCA 60.142 45.833 6.95 0.00 0.00 4.92
3321 3338 6.015940 CCTGCTTCATTAACCTTCTTGTTCTT 60.016 38.462 0.00 0.00 0.00 2.52
3324 3341 4.524328 CCCTGCTTCATTAACCTTCTTGTT 59.476 41.667 0.00 0.00 0.00 2.83
3423 3440 2.721859 CTCGATCGCGGATGGACA 59.278 61.111 11.09 0.00 38.28 4.02
3433 3450 1.068885 GTCATACAGCTCCCTCGATCG 60.069 57.143 9.36 9.36 0.00 3.69
3469 3486 5.485620 TCCAGACAGTTTCATCTCATCAAG 58.514 41.667 0.00 0.00 0.00 3.02
3685 3702 3.565902 CCAGGGAAAACAGTTTCAGAGTC 59.434 47.826 0.00 0.00 44.29 3.36
3694 3711 1.620822 GACATGCCAGGGAAAACAGT 58.379 50.000 0.00 0.00 0.00 3.55
3714 3731 7.140048 TCAACAAAACCATTTTACGGTACATC 58.860 34.615 0.00 0.00 34.99 3.06
3715 3732 7.040473 TCAACAAAACCATTTTACGGTACAT 57.960 32.000 0.00 0.00 34.99 2.29
3763 3780 4.680440 GCACCAGTTTGTCTTCCAATGTTT 60.680 41.667 0.00 0.00 31.81 2.83
3767 3784 2.362077 GTGCACCAGTTTGTCTTCCAAT 59.638 45.455 5.22 0.00 31.81 3.16
3804 3821 3.254166 ACAATTGCCAAGTCTGTGTCATC 59.746 43.478 5.05 0.00 0.00 2.92
3808 3825 2.653726 TCACAATTGCCAAGTCTGTGT 58.346 42.857 5.05 0.00 38.76 3.72
3809 3826 3.928727 ATCACAATTGCCAAGTCTGTG 57.071 42.857 5.05 9.60 38.97 3.66
3846 3863 4.383770 GCCTTTATACAAGCCTGTACCAGA 60.384 45.833 0.00 0.00 40.84 3.86
3875 3892 2.464157 ACTCTTCTGCTACAGTTGGC 57.536 50.000 0.00 0.00 32.61 4.52
3880 3897 4.179926 TGCACTTACTCTTCTGCTACAG 57.820 45.455 0.00 0.00 0.00 2.74
3883 3900 4.393062 GCATTTGCACTTACTCTTCTGCTA 59.607 41.667 0.00 0.00 41.59 3.49
3912 3929 3.904136 AATTGTGCAGAAAGGAAGACG 57.096 42.857 0.00 0.00 0.00 4.18
3915 3932 8.598075 GCAAATTATAATTGTGCAGAAAGGAAG 58.402 33.333 24.70 0.00 35.00 3.46
4047 4064 2.854805 GCTTCTTGTCAAAACGTCTGGC 60.855 50.000 0.00 0.00 0.00 4.85
4116 4133 3.235157 GCACTGGATAATGCTTGCAAA 57.765 42.857 0.00 0.00 38.84 3.68
4147 4168 7.985752 ACTAAACCGGATAAAATACCTCTCTTG 59.014 37.037 9.46 0.00 0.00 3.02
4195 4217 7.807977 ACTTCAATTTGTATGAACACTCAGT 57.192 32.000 0.00 0.00 34.61 3.41
4238 4260 0.598065 ACAGCCAGAACCAAATTCGC 59.402 50.000 0.00 0.00 42.69 4.70
4285 4308 2.111878 GTCCAGCACTGCCACACT 59.888 61.111 0.00 0.00 0.00 3.55
4319 4342 0.040958 GTTGCGGCAAGAGTTCACTG 60.041 55.000 16.97 0.00 0.00 3.66
4351 4393 3.317993 GGGATATGACACGAAATTTGGGG 59.682 47.826 0.28 0.28 0.00 4.96
4409 4451 6.539173 TGAAGGAGATCTGGAGACTACTATC 58.461 44.000 0.00 0.00 0.00 2.08
4423 4465 4.034510 CCACGCATAAACTTGAAGGAGATC 59.965 45.833 0.00 0.00 0.00 2.75
4424 4466 3.941483 CCACGCATAAACTTGAAGGAGAT 59.059 43.478 0.00 0.00 0.00 2.75
4425 4467 3.334691 CCACGCATAAACTTGAAGGAGA 58.665 45.455 0.00 0.00 0.00 3.71
4426 4468 2.159517 GCCACGCATAAACTTGAAGGAG 60.160 50.000 0.00 0.00 0.00 3.69
4427 4469 1.810151 GCCACGCATAAACTTGAAGGA 59.190 47.619 0.00 0.00 0.00 3.36
4428 4470 1.812571 AGCCACGCATAAACTTGAAGG 59.187 47.619 0.00 0.00 0.00 3.46
4429 4471 2.855180 CAGCCACGCATAAACTTGAAG 58.145 47.619 0.00 0.00 0.00 3.02
4430 4472 1.068610 GCAGCCACGCATAAACTTGAA 60.069 47.619 0.00 0.00 0.00 2.69
4431 4473 0.521291 GCAGCCACGCATAAACTTGA 59.479 50.000 0.00 0.00 0.00 3.02
4432 4474 0.523072 AGCAGCCACGCATAAACTTG 59.477 50.000 0.00 0.00 0.00 3.16
4433 4475 1.247567 AAGCAGCCACGCATAAACTT 58.752 45.000 0.00 0.00 0.00 2.66
4434 4476 1.068333 CAAAGCAGCCACGCATAAACT 60.068 47.619 0.00 0.00 0.00 2.66
4435 4477 1.339711 CAAAGCAGCCACGCATAAAC 58.660 50.000 0.00 0.00 0.00 2.01
4436 4478 0.243365 CCAAAGCAGCCACGCATAAA 59.757 50.000 0.00 0.00 0.00 1.40
4437 4479 1.882311 CCAAAGCAGCCACGCATAA 59.118 52.632 0.00 0.00 0.00 1.90
4438 4480 2.699768 GCCAAAGCAGCCACGCATA 61.700 57.895 0.00 0.00 39.53 3.14
4439 4481 4.060038 GCCAAAGCAGCCACGCAT 62.060 61.111 0.00 0.00 39.53 4.73
4446 4488 3.903932 GAGCGTTGGCCAAAGCAGC 62.904 63.158 43.53 33.94 45.90 5.25
4447 4489 2.256461 GAGCGTTGGCCAAAGCAG 59.744 61.111 43.53 26.28 45.90 4.24
4448 4490 2.518112 TGAGCGTTGGCCAAAGCA 60.518 55.556 43.53 29.11 45.90 3.91
4449 4491 2.256461 CTGAGCGTTGGCCAAAGC 59.744 61.111 39.08 39.08 44.27 3.51
4450 4492 2.956987 CCTGAGCGTTGGCCAAAG 59.043 61.111 25.10 25.10 41.24 2.77
4451 4493 3.294493 GCCTGAGCGTTGGCCAAA 61.294 61.111 22.47 2.61 43.11 3.28
4456 4498 4.711949 AGGCAGCCTGAGCGTTGG 62.712 66.667 15.24 0.00 46.67 3.77
4468 4510 0.596600 CACAACAAAGCTGCAGGCAG 60.597 55.000 17.12 16.68 46.15 4.85
4469 4511 1.438399 CACAACAAAGCTGCAGGCA 59.562 52.632 17.12 0.00 44.79 4.75
4470 4512 1.300388 CCACAACAAAGCTGCAGGC 60.300 57.895 17.12 7.98 42.19 4.85
4471 4513 1.300388 GCCACAACAAAGCTGCAGG 60.300 57.895 17.12 0.31 0.00 4.85
4472 4514 0.596600 CAGCCACAACAAAGCTGCAG 60.597 55.000 10.11 10.11 46.60 4.41
4473 4515 1.438399 CAGCCACAACAAAGCTGCA 59.562 52.632 1.02 0.00 46.60 4.41
4474 4516 4.331356 CAGCCACAACAAAGCTGC 57.669 55.556 0.00 0.00 46.60 5.25
4476 4518 1.609208 CTACCAGCCACAACAAAGCT 58.391 50.000 0.00 0.00 37.32 3.74
4477 4519 0.598065 CCTACCAGCCACAACAAAGC 59.402 55.000 0.00 0.00 0.00 3.51
4478 4520 1.608590 CACCTACCAGCCACAACAAAG 59.391 52.381 0.00 0.00 0.00 2.77
4479 4521 1.686355 CACCTACCAGCCACAACAAA 58.314 50.000 0.00 0.00 0.00 2.83
4480 4522 0.179004 CCACCTACCAGCCACAACAA 60.179 55.000 0.00 0.00 0.00 2.83
4481 4523 1.454104 CCACCTACCAGCCACAACA 59.546 57.895 0.00 0.00 0.00 3.33
4482 4524 1.303317 CCCACCTACCAGCCACAAC 60.303 63.158 0.00 0.00 0.00 3.32
4483 4525 3.166434 CCCACCTACCAGCCACAA 58.834 61.111 0.00 0.00 0.00 3.33
4484 4526 3.646715 GCCCACCTACCAGCCACA 61.647 66.667 0.00 0.00 0.00 4.17
4485 4527 4.426313 GGCCCACCTACCAGCCAC 62.426 72.222 0.00 0.00 45.07 5.01
4496 4538 3.766691 CAATGCTGGCAGGCCCAC 61.767 66.667 17.64 0.00 39.18 4.61
4497 4539 3.831727 AACAATGCTGGCAGGCCCA 62.832 57.895 17.64 6.17 42.79 5.36
4498 4540 2.511545 GAAACAATGCTGGCAGGCCC 62.512 60.000 17.64 0.00 34.56 5.80
4499 4541 1.079612 GAAACAATGCTGGCAGGCC 60.080 57.895 17.64 2.62 0.00 5.19
4500 4542 1.079612 GGAAACAATGCTGGCAGGC 60.080 57.895 17.64 9.25 0.00 4.85
4501 4543 1.186917 TGGGAAACAATGCTGGCAGG 61.187 55.000 17.64 1.38 0.00 4.85
4502 4544 0.899720 ATGGGAAACAATGCTGGCAG 59.100 50.000 10.94 10.94 0.00 4.85
4503 4545 0.609151 CATGGGAAACAATGCTGGCA 59.391 50.000 0.00 0.00 0.00 4.92
4504 4546 0.741927 GCATGGGAAACAATGCTGGC 60.742 55.000 0.00 0.00 37.10 4.85
4505 4547 3.446507 GCATGGGAAACAATGCTGG 57.553 52.632 0.00 0.00 37.10 4.85
4508 4550 2.460757 AACAGCATGGGAAACAATGC 57.539 45.000 0.00 0.00 43.62 3.56
4509 4551 4.487948 CAGTAACAGCATGGGAAACAATG 58.512 43.478 0.00 0.00 43.62 2.82
4510 4552 3.511146 CCAGTAACAGCATGGGAAACAAT 59.489 43.478 0.00 0.00 43.62 2.71
4511 4553 2.890311 CCAGTAACAGCATGGGAAACAA 59.110 45.455 0.00 0.00 43.62 2.83
4512 4554 2.107378 TCCAGTAACAGCATGGGAAACA 59.893 45.455 0.00 0.00 43.62 2.83
4513 4555 2.790433 TCCAGTAACAGCATGGGAAAC 58.210 47.619 0.00 0.00 43.62 2.78
4514 4556 3.355378 CATCCAGTAACAGCATGGGAAA 58.645 45.455 0.00 0.00 43.62 3.13
4515 4557 2.357050 CCATCCAGTAACAGCATGGGAA 60.357 50.000 0.00 0.00 43.62 3.97
4516 4558 1.212688 CCATCCAGTAACAGCATGGGA 59.787 52.381 0.00 0.00 43.62 4.37
4517 4559 1.064463 ACCATCCAGTAACAGCATGGG 60.064 52.381 0.00 0.00 43.62 4.00
4518 4560 2.424601 CAACCATCCAGTAACAGCATGG 59.575 50.000 0.00 0.00 43.62 3.66
4519 4561 2.424601 CCAACCATCCAGTAACAGCATG 59.575 50.000 0.00 0.00 46.00 4.06
4520 4562 2.041620 ACCAACCATCCAGTAACAGCAT 59.958 45.455 0.00 0.00 0.00 3.79
4521 4563 1.423541 ACCAACCATCCAGTAACAGCA 59.576 47.619 0.00 0.00 0.00 4.41
4522 4564 1.812571 CACCAACCATCCAGTAACAGC 59.187 52.381 0.00 0.00 0.00 4.40
4523 4565 2.436417 CCACCAACCATCCAGTAACAG 58.564 52.381 0.00 0.00 0.00 3.16
4524 4566 1.074727 CCCACCAACCATCCAGTAACA 59.925 52.381 0.00 0.00 0.00 2.41
4525 4567 1.615919 CCCCACCAACCATCCAGTAAC 60.616 57.143 0.00 0.00 0.00 2.50
4526 4568 0.701731 CCCCACCAACCATCCAGTAA 59.298 55.000 0.00 0.00 0.00 2.24
4527 4569 1.858739 GCCCCACCAACCATCCAGTA 61.859 60.000 0.00 0.00 0.00 2.74
4528 4570 3.180282 CCCCACCAACCATCCAGT 58.820 61.111 0.00 0.00 0.00 4.00
4529 4571 2.362889 GCCCCACCAACCATCCAG 60.363 66.667 0.00 0.00 0.00 3.86
4530 4572 2.104359 AATGCCCCACCAACCATCCA 62.104 55.000 0.00 0.00 0.00 3.41
4531 4573 0.909133 AAATGCCCCACCAACCATCC 60.909 55.000 0.00 0.00 0.00 3.51
4532 4574 0.249955 CAAATGCCCCACCAACCATC 59.750 55.000 0.00 0.00 0.00 3.51
4533 4575 1.840224 GCAAATGCCCCACCAACCAT 61.840 55.000 0.00 0.00 34.31 3.55
4534 4576 2.515071 GCAAATGCCCCACCAACCA 61.515 57.895 0.00 0.00 34.31 3.67
4535 4577 0.902516 TAGCAAATGCCCCACCAACC 60.903 55.000 0.94 0.00 43.38 3.77
4536 4578 0.532115 CTAGCAAATGCCCCACCAAC 59.468 55.000 0.94 0.00 43.38 3.77
4537 4579 1.257055 GCTAGCAAATGCCCCACCAA 61.257 55.000 10.63 0.00 43.38 3.67
4538 4580 1.682005 GCTAGCAAATGCCCCACCA 60.682 57.895 10.63 0.00 43.38 4.17
4539 4581 1.380380 AGCTAGCAAATGCCCCACC 60.380 57.895 18.83 0.00 43.38 4.61
4540 4582 1.811860 CAGCTAGCAAATGCCCCAC 59.188 57.895 18.83 0.00 43.38 4.61
4541 4583 2.053865 GCAGCTAGCAAATGCCCCA 61.054 57.895 18.83 0.00 44.79 4.96
4542 4584 2.810403 GCAGCTAGCAAATGCCCC 59.190 61.111 18.83 0.00 44.79 5.80
4543 4585 2.409870 ACGCAGCTAGCAAATGCCC 61.410 57.895 18.83 0.00 46.13 5.36
4544 4586 1.226491 CACGCAGCTAGCAAATGCC 60.226 57.895 18.83 2.57 46.13 4.40
4545 4587 0.795735 CACACGCAGCTAGCAAATGC 60.796 55.000 18.83 16.91 46.13 3.56
4546 4588 0.518636 ACACACGCAGCTAGCAAATG 59.481 50.000 18.83 11.70 46.13 2.32
4547 4589 0.518636 CACACACGCAGCTAGCAAAT 59.481 50.000 18.83 0.00 46.13 2.32
4548 4590 0.531753 TCACACACGCAGCTAGCAAA 60.532 50.000 18.83 0.00 46.13 3.68
4549 4591 0.945743 CTCACACACGCAGCTAGCAA 60.946 55.000 18.83 0.00 46.13 3.91
4550 4592 1.373371 CTCACACACGCAGCTAGCA 60.373 57.895 18.83 0.00 46.13 3.49
4551 4593 1.373497 ACTCACACACGCAGCTAGC 60.373 57.895 6.62 6.62 40.87 3.42
4552 4594 1.621301 GCACTCACACACGCAGCTAG 61.621 60.000 0.00 0.00 0.00 3.42
4553 4595 1.664649 GCACTCACACACGCAGCTA 60.665 57.895 0.00 0.00 0.00 3.32
4554 4596 2.969238 GCACTCACACACGCAGCT 60.969 61.111 0.00 0.00 0.00 4.24
4555 4597 4.360027 CGCACTCACACACGCAGC 62.360 66.667 0.00 0.00 0.00 5.25
4556 4598 2.525248 AACGCACTCACACACGCAG 61.525 57.895 0.00 0.00 0.00 5.18
4557 4599 2.510464 AACGCACTCACACACGCA 60.510 55.556 0.00 0.00 0.00 5.24
4558 4600 1.831389 ATCAACGCACTCACACACGC 61.831 55.000 0.00 0.00 0.00 5.34
4559 4601 0.581529 AATCAACGCACTCACACACG 59.418 50.000 0.00 0.00 0.00 4.49
4560 4602 2.411547 GCTAATCAACGCACTCACACAC 60.412 50.000 0.00 0.00 0.00 3.82
4561 4603 1.798223 GCTAATCAACGCACTCACACA 59.202 47.619 0.00 0.00 0.00 3.72
4562 4604 2.069273 AGCTAATCAACGCACTCACAC 58.931 47.619 0.00 0.00 0.00 3.82
4563 4605 2.068519 CAGCTAATCAACGCACTCACA 58.931 47.619 0.00 0.00 0.00 3.58
4564 4606 1.394917 CCAGCTAATCAACGCACTCAC 59.605 52.381 0.00 0.00 0.00 3.51
4565 4607 1.001974 ACCAGCTAATCAACGCACTCA 59.998 47.619 0.00 0.00 0.00 3.41
4566 4608 1.726853 ACCAGCTAATCAACGCACTC 58.273 50.000 0.00 0.00 0.00 3.51
4567 4609 1.806542 CAACCAGCTAATCAACGCACT 59.193 47.619 0.00 0.00 0.00 4.40
4568 4610 1.135689 CCAACCAGCTAATCAACGCAC 60.136 52.381 0.00 0.00 0.00 5.34
4569 4611 1.164411 CCAACCAGCTAATCAACGCA 58.836 50.000 0.00 0.00 0.00 5.24
4570 4612 0.451783 CCCAACCAGCTAATCAACGC 59.548 55.000 0.00 0.00 0.00 4.84
4571 4613 1.468520 CACCCAACCAGCTAATCAACG 59.531 52.381 0.00 0.00 0.00 4.10
4572 4614 1.202348 GCACCCAACCAGCTAATCAAC 59.798 52.381 0.00 0.00 0.00 3.18
4573 4615 1.544724 GCACCCAACCAGCTAATCAA 58.455 50.000 0.00 0.00 0.00 2.57
4574 4616 0.676466 CGCACCCAACCAGCTAATCA 60.676 55.000 0.00 0.00 0.00 2.57
4575 4617 1.376609 CCGCACCCAACCAGCTAATC 61.377 60.000 0.00 0.00 0.00 1.75
4576 4618 1.378514 CCGCACCCAACCAGCTAAT 60.379 57.895 0.00 0.00 0.00 1.73
4577 4619 2.033448 CCGCACCCAACCAGCTAA 59.967 61.111 0.00 0.00 0.00 3.09
4578 4620 1.481901 TAACCGCACCCAACCAGCTA 61.482 55.000 0.00 0.00 0.00 3.32
4579 4621 2.824880 TAACCGCACCCAACCAGCT 61.825 57.895 0.00 0.00 0.00 4.24
4580 4622 2.281900 TAACCGCACCCAACCAGC 60.282 61.111 0.00 0.00 0.00 4.85
4581 4623 0.953960 GAGTAACCGCACCCAACCAG 60.954 60.000 0.00 0.00 0.00 4.00
4582 4624 1.071814 GAGTAACCGCACCCAACCA 59.928 57.895 0.00 0.00 0.00 3.67
4583 4625 0.535553 TTGAGTAACCGCACCCAACC 60.536 55.000 0.00 0.00 0.00 3.77
4584 4626 1.310904 TTTGAGTAACCGCACCCAAC 58.689 50.000 0.00 0.00 0.00 3.77
4585 4627 2.054232 TTTTGAGTAACCGCACCCAA 57.946 45.000 0.00 0.00 0.00 4.12
4586 4628 2.054232 TTTTTGAGTAACCGCACCCA 57.946 45.000 0.00 0.00 0.00 4.51
4607 4649 0.465287 CAGCACCCAACCAGCTTTTT 59.535 50.000 0.00 0.00 36.26 1.94
4608 4650 1.402107 CCAGCACCCAACCAGCTTTT 61.402 55.000 0.00 0.00 36.26 2.27
4609 4651 1.833934 CCAGCACCCAACCAGCTTT 60.834 57.895 0.00 0.00 36.26 3.51
4610 4652 2.203538 CCAGCACCCAACCAGCTT 60.204 61.111 0.00 0.00 36.26 3.74
4611 4653 4.982701 GCCAGCACCCAACCAGCT 62.983 66.667 0.00 0.00 39.63 4.24
4613 4655 2.776370 ATCTGCCAGCACCCAACCAG 62.776 60.000 0.00 0.00 0.00 4.00
4614 4656 2.370459 AATCTGCCAGCACCCAACCA 62.370 55.000 0.00 0.00 0.00 3.67
4615 4657 1.187567 AAATCTGCCAGCACCCAACC 61.188 55.000 0.00 0.00 0.00 3.77
4616 4658 0.681175 AAAATCTGCCAGCACCCAAC 59.319 50.000 0.00 0.00 0.00 3.77
4617 4659 0.968405 GAAAATCTGCCAGCACCCAA 59.032 50.000 0.00 0.00 0.00 4.12
4618 4660 0.112995 AGAAAATCTGCCAGCACCCA 59.887 50.000 0.00 0.00 0.00 4.51
4619 4661 0.529378 CAGAAAATCTGCCAGCACCC 59.471 55.000 0.00 0.00 37.72 4.61
4620 4662 0.529378 CCAGAAAATCTGCCAGCACC 59.471 55.000 1.79 0.00 42.98 5.01
4621 4663 1.471684 CTCCAGAAAATCTGCCAGCAC 59.528 52.381 1.79 0.00 42.98 4.40
4622 4664 1.830279 CTCCAGAAAATCTGCCAGCA 58.170 50.000 1.79 0.00 42.98 4.41
4623 4665 0.455005 GCTCCAGAAAATCTGCCAGC 59.545 55.000 11.46 11.46 42.98 4.85
4624 4666 1.101331 GGCTCCAGAAAATCTGCCAG 58.899 55.000 1.79 1.90 42.98 4.85
4625 4667 0.700564 AGGCTCCAGAAAATCTGCCA 59.299 50.000 9.15 0.00 42.98 4.92
4626 4668 1.101331 CAGGCTCCAGAAAATCTGCC 58.899 55.000 1.79 0.00 42.98 4.85
4627 4669 1.471684 CACAGGCTCCAGAAAATCTGC 59.528 52.381 1.79 0.00 42.98 4.26
4628 4670 2.089980 CCACAGGCTCCAGAAAATCTG 58.910 52.381 0.32 0.32 43.91 2.90
4629 4671 1.707427 ACCACAGGCTCCAGAAAATCT 59.293 47.619 0.00 0.00 0.00 2.40
4630 4672 1.815003 CACCACAGGCTCCAGAAAATC 59.185 52.381 0.00 0.00 0.00 2.17
4631 4673 1.425066 TCACCACAGGCTCCAGAAAAT 59.575 47.619 0.00 0.00 0.00 1.82
4632 4674 0.843309 TCACCACAGGCTCCAGAAAA 59.157 50.000 0.00 0.00 0.00 2.29
4633 4675 0.397941 CTCACCACAGGCTCCAGAAA 59.602 55.000 0.00 0.00 0.00 2.52
4634 4676 1.483595 CCTCACCACAGGCTCCAGAA 61.484 60.000 0.00 0.00 0.00 3.02
4635 4677 1.915266 CCTCACCACAGGCTCCAGA 60.915 63.158 0.00 0.00 0.00 3.86
4636 4678 2.177594 GACCTCACCACAGGCTCCAG 62.178 65.000 0.00 0.00 36.98 3.86
4637 4679 2.122413 ACCTCACCACAGGCTCCA 60.122 61.111 0.00 0.00 36.98 3.86
4638 4680 2.665603 GACCTCACCACAGGCTCC 59.334 66.667 0.00 0.00 36.98 4.70
4639 4681 1.484444 AAGGACCTCACCACAGGCTC 61.484 60.000 0.00 0.00 36.98 4.70
4640 4682 1.062488 AAAGGACCTCACCACAGGCT 61.062 55.000 0.00 0.00 36.98 4.58
4641 4683 0.890996 CAAAGGACCTCACCACAGGC 60.891 60.000 0.00 0.00 36.98 4.85
4642 4684 0.890996 GCAAAGGACCTCACCACAGG 60.891 60.000 0.00 0.00 39.80 4.00
4643 4685 2.633860 GCAAAGGACCTCACCACAG 58.366 57.895 0.00 0.00 0.00 3.66
4644 4686 4.898607 GCAAAGGACCTCACCACA 57.101 55.556 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.