Multiple sequence alignment - TraesCS1D01G206200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G206200 chr1D 100.000 3997 0 0 1 3997 291798560 291802556 0.000000e+00 7382.0
1 TraesCS1D01G206200 chr1D 94.883 1759 79 7 1148 2902 291841758 291840007 0.000000e+00 2739.0
2 TraesCS1D01G206200 chr1D 88.667 1050 69 28 143 1148 291842317 291841274 0.000000e+00 1234.0
3 TraesCS1D01G206200 chr1D 85.595 479 36 27 1162 1632 291799254 291799707 4.680000e-129 472.0
4 TraesCS1D01G206200 chr1D 85.595 479 36 27 695 1148 291799721 291800191 4.680000e-129 472.0
5 TraesCS1D01G206200 chr1D 92.857 140 9 1 3513 3651 379728531 379728392 6.770000e-48 202.0
6 TraesCS1D01G206200 chr1D 93.182 132 8 1 1 131 80004099 80004230 4.080000e-45 193.0
7 TraesCS1D01G206200 chr4D 97.670 1116 10 2 2898 3997 18474291 18473176 0.000000e+00 1903.0
8 TraesCS1D01G206200 chr1B 91.164 928 69 7 1982 2902 392834038 392833117 0.000000e+00 1247.0
9 TraesCS1D01G206200 chr1B 87.353 767 59 20 1229 1980 392746910 392747653 0.000000e+00 845.0
10 TraesCS1D01G206200 chr1B 92.267 569 23 8 143 690 392738040 392738608 0.000000e+00 787.0
11 TraesCS1D01G206200 chr1B 90.404 594 42 5 293 874 392837951 392837361 0.000000e+00 767.0
12 TraesCS1D01G206200 chr1B 94.092 457 16 2 1449 1897 392834408 392833955 0.000000e+00 684.0
13 TraesCS1D01G206200 chr1B 86.683 413 20 18 762 1148 392746910 392747313 3.690000e-115 425.0
14 TraesCS1D01G206200 chr1B 85.195 385 38 7 1898 2273 392747496 392747870 1.050000e-100 377.0
15 TraesCS1D01G206200 chr1B 89.823 226 20 2 2269 2494 392754449 392754671 1.820000e-73 287.0
16 TraesCS1D01G206200 chr1B 93.443 183 9 2 966 1148 392834407 392834228 6.580000e-68 268.0
17 TraesCS1D01G206200 chr1B 96.063 127 4 1 8 134 328130923 328130798 5.240000e-49 206.0
18 TraesCS1D01G206200 chr1B 85.393 178 25 1 3337 3513 675965497 675965674 2.450000e-42 183.0
19 TraesCS1D01G206200 chr1B 88.235 85 3 1 695 772 392741657 392741741 1.180000e-15 95.3
20 TraesCS1D01G206200 chr1B 94.872 39 0 2 1384 1422 392834521 392834485 4.310000e-05 60.2
21 TraesCS1D01G206200 chr1A 88.783 1052 64 29 143 1148 364039620 364040663 0.000000e+00 1240.0
22 TraesCS1D01G206200 chr1A 87.617 1066 67 23 1148 2201 364040182 364041194 0.000000e+00 1177.0
23 TraesCS1D01G206200 chr1A 91.142 429 23 5 2486 2900 364041236 364041663 5.800000e-158 568.0
24 TraesCS1D01G206200 chr1A 87.283 173 14 4 3346 3511 532740997 532740826 1.470000e-44 191.0
25 TraesCS1D01G206200 chr1A 89.041 146 16 0 1835 1980 364040911 364041056 8.820000e-42 182.0
26 TraesCS1D01G206200 chr7B 92.641 462 34 0 233 694 43948647 43949108 0.000000e+00 665.0
27 TraesCS1D01G206200 chr7B 91.395 430 36 1 233 662 43896512 43896940 4.450000e-164 588.0
28 TraesCS1D01G206200 chr7B 85.714 476 59 9 225 696 592357910 592357440 9.980000e-136 494.0
29 TraesCS1D01G206200 chr7B 88.701 177 10 4 3510 3684 479504940 479505108 1.460000e-49 207.0
30 TraesCS1D01G206200 chr7B 84.615 169 21 4 3346 3511 245205559 245205725 3.200000e-36 163.0
31 TraesCS1D01G206200 chr7A 92.593 459 34 0 236 694 93065332 93064874 0.000000e+00 660.0
32 TraesCS1D01G206200 chr7A 84.100 478 64 9 225 696 632967195 632966724 6.090000e-123 451.0
33 TraesCS1D01G206200 chr7D 91.939 459 37 0 236 694 91055250 91054792 0.000000e+00 643.0
34 TraesCS1D01G206200 chr7D 88.636 176 17 2 3346 3519 45146384 45146210 1.130000e-50 211.0
35 TraesCS1D01G206200 chr7D 94.815 135 5 2 1 134 388652720 388652853 4.050000e-50 209.0
36 TraesCS1D01G206200 chr7D 88.268 179 13 4 3336 3512 316668826 316668998 1.460000e-49 207.0
37 TraesCS1D01G206200 chr7D 88.439 173 18 2 3340 3511 604913514 604913343 1.460000e-49 207.0
38 TraesCS1D01G206200 chr5B 90.278 504 31 4 3511 3997 548692963 548693465 0.000000e+00 643.0
39 TraesCS1D01G206200 chr5B 92.273 440 23 4 2902 3340 548692536 548692965 7.340000e-172 614.0
40 TraesCS1D01G206200 chr5B 90.751 173 13 3 3340 3510 685252519 685252348 1.120000e-55 228.0
41 TraesCS1D01G206200 chr5B 93.284 134 7 2 1 133 528272096 528271964 3.150000e-46 196.0
42 TraesCS1D01G206200 chr5B 84.091 176 21 6 3120 3294 44653081 44653250 3.200000e-36 163.0
43 TraesCS1D01G206200 chr5B 82.609 184 31 1 2902 3084 328214549 328214732 1.150000e-35 161.0
44 TraesCS1D01G206200 chr3D 89.262 447 33 7 2902 3338 567699299 567698858 2.720000e-151 545.0
45 TraesCS1D01G206200 chr3D 93.194 191 11 2 3513 3702 567698856 567698667 3.040000e-71 279.0
46 TraesCS1D01G206200 chr3D 89.071 183 17 3 3332 3513 603533776 603533956 1.450000e-54 224.0
47 TraesCS1D01G206200 chr2D 91.038 212 18 1 3787 3997 12379279 12379068 6.540000e-73 285.0
48 TraesCS1D01G206200 chr2D 89.831 177 15 3 3338 3513 5442013 5442187 1.450000e-54 224.0
49 TraesCS1D01G206200 chr2D 95.556 135 4 2 1 134 181248592 181248459 8.700000e-52 215.0
50 TraesCS1D01G206200 chr2D 78.142 183 37 3 2904 3084 578642095 578642276 3.260000e-21 113.0
51 TraesCS1D01G206200 chr2B 90.526 190 16 2 2902 3089 758927301 758927112 2.380000e-62 250.0
52 TraesCS1D01G206200 chr2B 89.697 165 15 2 3346 3509 554452649 554452812 4.050000e-50 209.0
53 TraesCS1D01G206200 chr6B 88.764 178 16 3 3338 3514 347599854 347599680 8.700000e-52 215.0
54 TraesCS1D01G206200 chr6B 93.750 128 6 2 8 134 23635295 23635169 1.470000e-44 191.0
55 TraesCS1D01G206200 chr6D 93.333 135 7 2 1 134 47098751 47098884 8.760000e-47 198.0
56 TraesCS1D01G206200 chr6D 93.233 133 8 1 1 132 27464069 27464201 1.130000e-45 195.0
57 TraesCS1D01G206200 chr6D 91.489 94 6 2 3516 3607 418272866 418272773 1.170000e-25 128.0
58 TraesCS1D01G206200 chr3B 92.593 135 7 3 1 134 406911982 406912114 1.470000e-44 191.0
59 TraesCS1D01G206200 chr4B 84.746 177 16 6 3338 3513 4181522 4181356 2.470000e-37 167.0
60 TraesCS1D01G206200 chr4B 83.636 165 19 8 3352 3513 565314127 565313968 8.950000e-32 148.0
61 TraesCS1D01G206200 chr5A 93.056 72 5 0 3513 3584 328948997 328948926 5.460000e-19 106.0
62 TraesCS1D01G206200 chr4A 83.333 108 14 3 3514 3619 96540305 96540410 3.290000e-16 97.1
63 TraesCS1D01G206200 chr5D 81.818 110 13 3 3514 3619 72366627 72366521 7.120000e-13 86.1
64 TraesCS1D01G206200 chrUn 92.982 57 4 0 1149 1205 183180842 183180786 2.560000e-12 84.2
65 TraesCS1D01G206200 chrUn 92.982 57 4 0 1149 1205 254878603 254878547 2.560000e-12 84.2
66 TraesCS1D01G206200 chrUn 94.444 54 3 0 1149 1202 339676612 339676665 2.560000e-12 84.2
67 TraesCS1D01G206200 chrUn 94.444 54 3 0 1149 1202 391943778 391943831 2.560000e-12 84.2
68 TraesCS1D01G206200 chrUn 92.982 57 4 0 1149 1205 391959429 391959373 2.560000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G206200 chr1D 291798560 291802556 3996 False 2775.333333 7382 90.396667 1 3997 3 chr1D.!!$F2 3996
1 TraesCS1D01G206200 chr1D 291840007 291842317 2310 True 1986.500000 2739 91.775000 143 2902 2 chr1D.!!$R2 2759
2 TraesCS1D01G206200 chr4D 18473176 18474291 1115 True 1903.000000 1903 97.670000 2898 3997 1 chr4D.!!$R1 1099
3 TraesCS1D01G206200 chr1B 392833117 392837951 4834 True 605.240000 1247 92.795000 293 2902 5 chr1B.!!$R2 2609
4 TraesCS1D01G206200 chr1B 392746910 392747870 960 False 549.000000 845 86.410333 762 2273 3 chr1B.!!$F4 1511
5 TraesCS1D01G206200 chr1B 392738040 392741741 3701 False 441.150000 787 90.251000 143 772 2 chr1B.!!$F3 629
6 TraesCS1D01G206200 chr1A 364039620 364041663 2043 False 791.750000 1240 89.145750 143 2900 4 chr1A.!!$F1 2757
7 TraesCS1D01G206200 chr5B 548692536 548693465 929 False 628.500000 643 91.275500 2902 3997 2 chr5B.!!$F3 1095
8 TraesCS1D01G206200 chr3D 567698667 567699299 632 True 412.000000 545 91.228000 2902 3702 2 chr3D.!!$R1 800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.036875 TGTGTGGTGTGTTGGTGTGA 59.963 50.0 0.00 0.00 0.00 3.58 F
915 1232 0.102481 CAGGTAGTGTTCCGATCGGG 59.898 60.0 32.79 15.22 35.59 5.14 F
2208 7694 0.322906 TCACATTTGCCGCCCATGTA 60.323 50.0 4.60 0.00 29.78 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1008 2836 1.335182 CGTCGTGATGCTATGAGAGGT 59.665 52.381 0.00 0.0 0.0 3.85 R
2487 7973 0.179094 CGCCGGAATGCTTGTACCTA 60.179 55.000 5.05 0.0 0.0 3.08 R
3493 9008 0.470268 TTAGGGGGTGTTTGGTTGCC 60.470 55.000 0.00 0.0 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.643763 GTGTGTTTGTGTTTGTGTTGGA 58.356 40.909 0.00 0.00 0.00 3.53
22 23 3.427193 GTGTGTTTGTGTTTGTGTTGGAC 59.573 43.478 0.00 0.00 0.00 4.02
23 24 2.990514 GTGTTTGTGTTTGTGTTGGACC 59.009 45.455 0.00 0.00 0.00 4.46
24 25 2.255316 GTTTGTGTTTGTGTTGGACCG 58.745 47.619 0.00 0.00 0.00 4.79
25 26 1.535833 TTGTGTTTGTGTTGGACCGT 58.464 45.000 0.00 0.00 0.00 4.83
26 27 0.805614 TGTGTTTGTGTTGGACCGTG 59.194 50.000 0.00 0.00 0.00 4.94
27 28 0.524604 GTGTTTGTGTTGGACCGTGC 60.525 55.000 0.00 0.00 0.00 5.34
28 29 0.678366 TGTTTGTGTTGGACCGTGCT 60.678 50.000 0.00 0.00 0.00 4.40
29 30 0.454196 GTTTGTGTTGGACCGTGCTT 59.546 50.000 0.00 0.00 0.00 3.91
30 31 0.453793 TTTGTGTTGGACCGTGCTTG 59.546 50.000 0.00 0.00 0.00 4.01
31 32 1.999071 TTGTGTTGGACCGTGCTTGC 61.999 55.000 0.00 0.00 0.00 4.01
32 33 3.276091 TGTTGGACCGTGCTTGCG 61.276 61.111 0.00 0.00 0.00 4.85
40 41 3.964875 CGTGCTTGCGGTGGCTTT 61.965 61.111 0.00 0.00 40.82 3.51
41 42 2.355009 GTGCTTGCGGTGGCTTTG 60.355 61.111 0.00 0.00 40.82 2.77
42 43 2.518112 TGCTTGCGGTGGCTTTGA 60.518 55.556 0.00 0.00 40.82 2.69
43 44 2.256461 GCTTGCGGTGGCTTTGAG 59.744 61.111 0.00 0.00 40.82 3.02
44 45 2.555547 GCTTGCGGTGGCTTTGAGT 61.556 57.895 0.00 0.00 40.82 3.41
45 46 1.283793 CTTGCGGTGGCTTTGAGTG 59.716 57.895 0.00 0.00 40.82 3.51
46 47 1.153066 TTGCGGTGGCTTTGAGTGA 60.153 52.632 0.00 0.00 40.82 3.41
47 48 1.165907 TTGCGGTGGCTTTGAGTGAG 61.166 55.000 0.00 0.00 40.82 3.51
48 49 1.598130 GCGGTGGCTTTGAGTGAGT 60.598 57.895 0.00 0.00 35.83 3.41
49 50 1.845809 GCGGTGGCTTTGAGTGAGTG 61.846 60.000 0.00 0.00 35.83 3.51
50 51 0.532862 CGGTGGCTTTGAGTGAGTGT 60.533 55.000 0.00 0.00 0.00 3.55
51 52 0.947244 GGTGGCTTTGAGTGAGTGTG 59.053 55.000 0.00 0.00 0.00 3.82
52 53 1.668419 GTGGCTTTGAGTGAGTGTGT 58.332 50.000 0.00 0.00 0.00 3.72
53 54 1.331756 GTGGCTTTGAGTGAGTGTGTG 59.668 52.381 0.00 0.00 0.00 3.82
54 55 1.065491 TGGCTTTGAGTGAGTGTGTGT 60.065 47.619 0.00 0.00 0.00 3.72
55 56 1.331756 GGCTTTGAGTGAGTGTGTGTG 59.668 52.381 0.00 0.00 0.00 3.82
56 57 1.331756 GCTTTGAGTGAGTGTGTGTGG 59.668 52.381 0.00 0.00 0.00 4.17
57 58 2.632377 CTTTGAGTGAGTGTGTGTGGT 58.368 47.619 0.00 0.00 0.00 4.16
58 59 2.022764 TTGAGTGAGTGTGTGTGGTG 57.977 50.000 0.00 0.00 0.00 4.17
59 60 0.901827 TGAGTGAGTGTGTGTGGTGT 59.098 50.000 0.00 0.00 0.00 4.16
60 61 1.290203 GAGTGAGTGTGTGTGGTGTG 58.710 55.000 0.00 0.00 0.00 3.82
61 62 0.613260 AGTGAGTGTGTGTGGTGTGT 59.387 50.000 0.00 0.00 0.00 3.72
62 63 1.003118 AGTGAGTGTGTGTGGTGTGTT 59.997 47.619 0.00 0.00 0.00 3.32
63 64 1.130373 GTGAGTGTGTGTGGTGTGTTG 59.870 52.381 0.00 0.00 0.00 3.33
64 65 0.732571 GAGTGTGTGTGGTGTGTTGG 59.267 55.000 0.00 0.00 0.00 3.77
65 66 0.037590 AGTGTGTGTGGTGTGTTGGT 59.962 50.000 0.00 0.00 0.00 3.67
66 67 0.170116 GTGTGTGTGGTGTGTTGGTG 59.830 55.000 0.00 0.00 0.00 4.17
67 68 0.250945 TGTGTGTGGTGTGTTGGTGT 60.251 50.000 0.00 0.00 0.00 4.16
68 69 0.170116 GTGTGTGGTGTGTTGGTGTG 59.830 55.000 0.00 0.00 0.00 3.82
69 70 0.036875 TGTGTGGTGTGTTGGTGTGA 59.963 50.000 0.00 0.00 0.00 3.58
70 71 0.450184 GTGTGGTGTGTTGGTGTGAC 59.550 55.000 0.00 0.00 0.00 3.67
71 72 0.036875 TGTGGTGTGTTGGTGTGACA 59.963 50.000 0.00 0.00 0.00 3.58
72 73 1.340502 TGTGGTGTGTTGGTGTGACAT 60.341 47.619 0.00 0.00 0.00 3.06
73 74 1.748493 GTGGTGTGTTGGTGTGACATT 59.252 47.619 0.00 0.00 0.00 2.71
74 75 1.747924 TGGTGTGTTGGTGTGACATTG 59.252 47.619 0.00 0.00 0.00 2.82
75 76 2.020720 GGTGTGTTGGTGTGACATTGA 58.979 47.619 0.00 0.00 0.00 2.57
76 77 2.622942 GGTGTGTTGGTGTGACATTGAT 59.377 45.455 0.00 0.00 0.00 2.57
77 78 3.818210 GGTGTGTTGGTGTGACATTGATA 59.182 43.478 0.00 0.00 0.00 2.15
78 79 4.277174 GGTGTGTTGGTGTGACATTGATAA 59.723 41.667 0.00 0.00 0.00 1.75
79 80 5.212194 GTGTGTTGGTGTGACATTGATAAC 58.788 41.667 0.00 0.00 0.00 1.89
80 81 5.008613 GTGTGTTGGTGTGACATTGATAACT 59.991 40.000 0.00 0.00 0.00 2.24
81 82 5.592282 TGTGTTGGTGTGACATTGATAACTT 59.408 36.000 0.00 0.00 0.00 2.66
82 83 6.096141 TGTGTTGGTGTGACATTGATAACTTT 59.904 34.615 0.00 0.00 0.00 2.66
83 84 6.417635 GTGTTGGTGTGACATTGATAACTTTG 59.582 38.462 0.00 0.00 0.00 2.77
84 85 6.096141 TGTTGGTGTGACATTGATAACTTTGT 59.904 34.615 0.00 0.00 0.00 2.83
85 86 6.070897 TGGTGTGACATTGATAACTTTGTG 57.929 37.500 0.00 0.00 0.00 3.33
86 87 4.917415 GGTGTGACATTGATAACTTTGTGC 59.083 41.667 0.00 0.00 0.00 4.57
87 88 5.278463 GGTGTGACATTGATAACTTTGTGCT 60.278 40.000 0.00 0.00 0.00 4.40
88 89 6.208644 GTGTGACATTGATAACTTTGTGCTT 58.791 36.000 0.00 0.00 0.00 3.91
89 90 6.142798 GTGTGACATTGATAACTTTGTGCTTG 59.857 38.462 0.00 0.00 0.00 4.01
90 91 5.630680 GTGACATTGATAACTTTGTGCTTGG 59.369 40.000 0.00 0.00 0.00 3.61
91 92 5.301551 TGACATTGATAACTTTGTGCTTGGT 59.698 36.000 0.00 0.00 0.00 3.67
92 93 5.531634 ACATTGATAACTTTGTGCTTGGTG 58.468 37.500 0.00 0.00 0.00 4.17
93 94 4.582701 TTGATAACTTTGTGCTTGGTGG 57.417 40.909 0.00 0.00 0.00 4.61
94 95 3.561143 TGATAACTTTGTGCTTGGTGGT 58.439 40.909 0.00 0.00 0.00 4.16
95 96 3.957497 TGATAACTTTGTGCTTGGTGGTT 59.043 39.130 0.00 0.00 0.00 3.67
96 97 2.671130 AACTTTGTGCTTGGTGGTTG 57.329 45.000 0.00 0.00 0.00 3.77
97 98 0.175531 ACTTTGTGCTTGGTGGTTGC 59.824 50.000 0.00 0.00 0.00 4.17
98 99 0.461135 CTTTGTGCTTGGTGGTTGCT 59.539 50.000 0.00 0.00 0.00 3.91
99 100 0.901124 TTTGTGCTTGGTGGTTGCTT 59.099 45.000 0.00 0.00 0.00 3.91
100 101 0.901124 TTGTGCTTGGTGGTTGCTTT 59.099 45.000 0.00 0.00 0.00 3.51
101 102 1.769026 TGTGCTTGGTGGTTGCTTTA 58.231 45.000 0.00 0.00 0.00 1.85
102 103 2.315176 TGTGCTTGGTGGTTGCTTTAT 58.685 42.857 0.00 0.00 0.00 1.40
103 104 2.697751 TGTGCTTGGTGGTTGCTTTATT 59.302 40.909 0.00 0.00 0.00 1.40
104 105 3.133721 TGTGCTTGGTGGTTGCTTTATTT 59.866 39.130 0.00 0.00 0.00 1.40
105 106 4.342378 TGTGCTTGGTGGTTGCTTTATTTA 59.658 37.500 0.00 0.00 0.00 1.40
106 107 5.011533 TGTGCTTGGTGGTTGCTTTATTTAT 59.988 36.000 0.00 0.00 0.00 1.40
107 108 6.209589 TGTGCTTGGTGGTTGCTTTATTTATA 59.790 34.615 0.00 0.00 0.00 0.98
108 109 7.093992 GTGCTTGGTGGTTGCTTTATTTATAA 58.906 34.615 0.00 0.00 0.00 0.98
109 110 7.600752 GTGCTTGGTGGTTGCTTTATTTATAAA 59.399 33.333 0.00 0.00 0.00 1.40
119 120 5.427036 CTTTATTTATAAAGCGGGGCGAA 57.573 39.130 8.78 0.00 41.69 4.70
120 121 5.823353 CTTTATTTATAAAGCGGGGCGAAA 58.177 37.500 8.78 0.00 41.69 3.46
121 122 3.982576 ATTTATAAAGCGGGGCGAAAG 57.017 42.857 3.94 0.00 0.00 2.62
139 140 4.534168 GAAAGCTTTTTCGGTAAGTGTCC 58.466 43.478 14.05 0.00 0.00 4.02
140 141 3.487120 AGCTTTTTCGGTAAGTGTCCT 57.513 42.857 0.00 0.00 0.00 3.85
141 142 3.139077 AGCTTTTTCGGTAAGTGTCCTG 58.861 45.455 0.00 0.00 0.00 3.86
272 289 3.911698 ACGAGGTGCAGCACGTCA 61.912 61.111 35.44 0.00 45.76 4.35
311 328 0.249868 CCTTGGCAGTCTTGTCGTCA 60.250 55.000 0.00 0.00 0.00 4.35
521 547 1.684450 TCCTTCTGCACGTTGTAGTCA 59.316 47.619 0.00 0.00 31.74 3.41
524 550 0.387565 TCTGCACGTTGTAGTCAGCA 59.612 50.000 0.00 0.00 31.74 4.41
623 649 0.179234 TCTTGGCCTTGACGTTGTCA 59.821 50.000 3.32 0.00 41.09 3.58
650 676 3.028921 GCTGCTCTCCACCTCCAGG 62.029 68.421 0.00 0.00 42.17 4.45
651 677 1.305633 CTGCTCTCCACCTCCAGGA 60.306 63.158 0.00 0.00 38.94 3.86
662 688 3.041211 CACCTCCAGGATGATGGTCTTA 58.959 50.000 0.00 0.00 38.92 2.10
663 689 3.649981 CACCTCCAGGATGATGGTCTTAT 59.350 47.826 0.00 0.00 38.92 1.73
728 1045 1.352404 CGAGTCCTCACGATCGTCC 59.648 63.158 19.84 4.11 0.00 4.79
776 1093 4.363990 CTGTGCTGCTCGGGTCGT 62.364 66.667 0.00 0.00 0.00 4.34
777 1094 4.662961 TGTGCTGCTCGGGTCGTG 62.663 66.667 0.00 0.00 0.00 4.35
780 1097 4.148825 GCTGCTCGGGTCGTGGAT 62.149 66.667 0.00 0.00 0.00 3.41
781 1098 2.782222 GCTGCTCGGGTCGTGGATA 61.782 63.158 0.00 0.00 0.00 2.59
782 1099 2.041976 CTGCTCGGGTCGTGGATAT 58.958 57.895 0.00 0.00 0.00 1.63
783 1100 0.389391 CTGCTCGGGTCGTGGATATT 59.611 55.000 0.00 0.00 0.00 1.28
784 1101 0.828022 TGCTCGGGTCGTGGATATTT 59.172 50.000 0.00 0.00 0.00 1.40
785 1102 2.033372 TGCTCGGGTCGTGGATATTTA 58.967 47.619 0.00 0.00 0.00 1.40
786 1103 2.631062 TGCTCGGGTCGTGGATATTTAT 59.369 45.455 0.00 0.00 0.00 1.40
787 1104 3.827876 TGCTCGGGTCGTGGATATTTATA 59.172 43.478 0.00 0.00 0.00 0.98
789 1106 5.041940 GCTCGGGTCGTGGATATTTATATC 58.958 45.833 1.83 1.83 38.70 1.63
792 1109 5.591472 TCGGGTCGTGGATATTTATATCGAT 59.409 40.000 2.16 2.16 39.98 3.59
793 1110 5.913514 CGGGTCGTGGATATTTATATCGATC 59.086 44.000 0.00 0.00 39.98 3.69
794 1111 5.913514 GGGTCGTGGATATTTATATCGATCG 59.086 44.000 9.36 9.36 39.98 3.69
795 1112 6.238566 GGGTCGTGGATATTTATATCGATCGA 60.239 42.308 21.86 21.86 39.98 3.59
796 1113 7.361127 GGTCGTGGATATTTATATCGATCGAT 58.639 38.462 31.39 31.39 39.98 3.59
797 1114 7.534578 GGTCGTGGATATTTATATCGATCGATC 59.465 40.741 32.50 17.04 39.98 3.69
817 1134 0.458716 GAAGAGGCTTTCGAGTCGGG 60.459 60.000 13.54 4.80 0.00 5.14
819 1136 1.153804 GAGGCTTTCGAGTCGGGTC 60.154 63.158 13.54 5.20 0.00 4.46
820 1137 2.506438 GGCTTTCGAGTCGGGTCG 60.506 66.667 13.54 1.38 41.51 4.79
821 1138 2.506438 GCTTTCGAGTCGGGTCGG 60.506 66.667 13.54 0.52 40.49 4.79
822 1139 2.181021 CTTTCGAGTCGGGTCGGG 59.819 66.667 13.54 0.00 40.49 5.14
823 1140 2.282391 TTTCGAGTCGGGTCGGGA 60.282 61.111 13.54 0.00 40.49 5.14
824 1141 2.267681 CTTTCGAGTCGGGTCGGGAG 62.268 65.000 13.54 0.00 40.49 4.30
826 1143 3.507009 CGAGTCGGGTCGGGAGTC 61.507 72.222 4.10 0.00 36.26 3.36
855 1172 2.819595 GACACGCCGTGGCATGAT 60.820 61.111 20.08 0.00 41.94 2.45
856 1173 2.813179 GACACGCCGTGGCATGATC 61.813 63.158 20.08 2.52 41.94 2.92
860 1177 3.272334 GCCGTGGCATGATCCGTC 61.272 66.667 8.63 0.00 41.49 4.79
861 1178 2.186644 CCGTGGCATGATCCGTCA 59.813 61.111 8.63 0.00 39.04 4.35
863 1180 2.516589 CGTGGCATGATCCGTCACG 61.517 63.158 20.41 20.41 43.58 4.35
880 1197 3.771160 GGACTCCGCCGTGGTCAT 61.771 66.667 8.48 0.00 39.52 3.06
881 1198 2.509336 GACTCCGCCGTGGTCATG 60.509 66.667 0.00 0.00 39.52 3.07
882 1199 4.760047 ACTCCGCCGTGGTCATGC 62.760 66.667 0.00 0.00 39.52 4.06
886 1203 4.805231 CGCCGTGGTCATGCCGTA 62.805 66.667 0.00 0.00 41.21 4.02
888 1205 1.817941 GCCGTGGTCATGCCGTATT 60.818 57.895 0.00 0.00 41.21 1.89
889 1206 1.772063 GCCGTGGTCATGCCGTATTC 61.772 60.000 0.00 0.00 41.21 1.75
890 1207 0.179084 CCGTGGTCATGCCGTATTCT 60.179 55.000 0.00 0.00 41.21 2.40
891 1208 1.209128 CGTGGTCATGCCGTATTCTC 58.791 55.000 0.00 0.00 41.21 2.87
892 1209 1.470805 CGTGGTCATGCCGTATTCTCA 60.471 52.381 0.00 0.00 41.21 3.27
893 1210 2.627945 GTGGTCATGCCGTATTCTCAA 58.372 47.619 0.00 0.00 41.21 3.02
894 1211 3.006940 GTGGTCATGCCGTATTCTCAAA 58.993 45.455 0.00 0.00 41.21 2.69
896 1213 3.876914 TGGTCATGCCGTATTCTCAAATC 59.123 43.478 0.00 0.00 41.21 2.17
897 1214 3.876914 GGTCATGCCGTATTCTCAAATCA 59.123 43.478 0.00 0.00 0.00 2.57
898 1215 4.024556 GGTCATGCCGTATTCTCAAATCAG 60.025 45.833 0.00 0.00 0.00 2.90
902 1219 4.693283 TGCCGTATTCTCAAATCAGGTAG 58.307 43.478 0.00 0.00 0.00 3.18
904 1221 4.508124 GCCGTATTCTCAAATCAGGTAGTG 59.492 45.833 0.00 0.00 0.00 2.74
905 1222 5.661458 CCGTATTCTCAAATCAGGTAGTGT 58.339 41.667 0.00 0.00 0.00 3.55
907 1224 6.255887 CCGTATTCTCAAATCAGGTAGTGTTC 59.744 42.308 0.00 0.00 0.00 3.18
908 1225 6.255887 CGTATTCTCAAATCAGGTAGTGTTCC 59.744 42.308 0.00 0.00 0.00 3.62
909 1226 4.188247 TCTCAAATCAGGTAGTGTTCCG 57.812 45.455 0.00 0.00 0.00 4.30
912 1229 4.755411 TCAAATCAGGTAGTGTTCCGATC 58.245 43.478 0.00 0.00 0.00 3.69
913 1230 3.438297 AATCAGGTAGTGTTCCGATCG 57.562 47.619 8.51 8.51 0.00 3.69
914 1231 1.100510 TCAGGTAGTGTTCCGATCGG 58.899 55.000 28.62 28.62 0.00 4.18
915 1232 0.102481 CAGGTAGTGTTCCGATCGGG 59.898 60.000 32.79 15.22 35.59 5.14
916 1233 0.324091 AGGTAGTGTTCCGATCGGGT 60.324 55.000 32.79 15.20 37.00 5.28
917 1234 0.533951 GGTAGTGTTCCGATCGGGTT 59.466 55.000 32.79 16.22 37.00 4.11
918 1235 1.470458 GGTAGTGTTCCGATCGGGTTC 60.470 57.143 32.79 22.03 37.00 3.62
919 1236 0.819582 TAGTGTTCCGATCGGGTTCC 59.180 55.000 32.79 18.43 37.00 3.62
920 1237 1.449070 GTGTTCCGATCGGGTTCCC 60.449 63.158 32.79 16.42 37.00 3.97
921 1238 1.914263 TGTTCCGATCGGGTTCCCA 60.914 57.895 32.79 18.62 37.00 4.37
922 1239 1.268992 TGTTCCGATCGGGTTCCCAT 61.269 55.000 32.79 1.14 37.00 4.00
925 1242 1.498264 TCCGATCGGGTTCCCATAAA 58.502 50.000 32.79 7.56 37.00 1.40
926 1243 1.139455 TCCGATCGGGTTCCCATAAAC 59.861 52.381 32.79 0.00 37.00 2.01
927 1244 1.134340 CCGATCGGGTTCCCATAAACA 60.134 52.381 26.95 0.00 0.00 2.83
928 1245 2.634600 CGATCGGGTTCCCATAAACAA 58.365 47.619 7.38 0.00 0.00 2.83
935 1252 4.627058 GGGTTCCCATAAACAAAGTTGTG 58.373 43.478 2.59 0.00 41.31 3.33
936 1253 4.100344 GGGTTCCCATAAACAAAGTTGTGT 59.900 41.667 2.59 0.00 41.31 3.72
937 1254 5.302313 GGGTTCCCATAAACAAAGTTGTGTA 59.698 40.000 2.59 0.00 41.31 2.90
938 1255 6.014925 GGGTTCCCATAAACAAAGTTGTGTAT 60.015 38.462 2.59 1.65 41.17 2.29
940 1257 7.383843 GGTTCCCATAAACAAAGTTGTGTATTG 59.616 37.037 4.42 2.29 39.07 1.90
942 1259 5.637387 CCCATAAACAAAGTTGTGTATTGGC 59.363 40.000 10.15 0.00 39.07 4.52
944 1261 2.415697 ACAAAGTTGTGTATTGGCGC 57.584 45.000 0.00 0.00 40.49 6.53
946 1263 3.142951 ACAAAGTTGTGTATTGGCGCTA 58.857 40.909 7.64 0.00 40.49 4.26
947 1264 3.058501 ACAAAGTTGTGTATTGGCGCTAC 60.059 43.478 7.64 2.35 40.49 3.58
949 2777 2.773487 AGTTGTGTATTGGCGCTACAA 58.227 42.857 7.64 4.10 31.27 2.41
957 2785 5.521010 GTGTATTGGCGCTACAACTACAATA 59.479 40.000 7.64 7.35 32.06 1.90
958 2786 6.202188 GTGTATTGGCGCTACAACTACAATAT 59.798 38.462 7.64 0.00 34.52 1.28
959 2787 7.383029 GTGTATTGGCGCTACAACTACAATATA 59.617 37.037 7.64 5.79 34.52 0.86
963 2791 4.922103 GGCGCTACAACTACAATATACTCC 59.078 45.833 7.64 0.00 0.00 3.85
964 2792 4.922103 GCGCTACAACTACAATATACTCCC 59.078 45.833 0.00 0.00 0.00 4.30
971 2799 8.207350 ACAACTACAATATACTCCCTGCATAT 57.793 34.615 0.00 0.00 0.00 1.78
977 2805 8.263854 ACAATATACTCCCTGCATATATACCC 57.736 38.462 0.00 0.00 0.00 3.69
978 2806 8.074363 ACAATATACTCCCTGCATATATACCCT 58.926 37.037 0.00 0.00 0.00 4.34
979 2807 8.938883 CAATATACTCCCTGCATATATACCCTT 58.061 37.037 0.00 0.00 0.00 3.95
980 2808 6.814954 ATACTCCCTGCATATATACCCTTG 57.185 41.667 0.00 0.00 0.00 3.61
981 2809 3.264450 ACTCCCTGCATATATACCCTTGC 59.736 47.826 0.00 0.01 35.67 4.01
982 2810 2.576191 TCCCTGCATATATACCCTTGCC 59.424 50.000 4.09 0.00 34.20 4.52
983 2811 2.578021 CCCTGCATATATACCCTTGCCT 59.422 50.000 4.09 0.00 34.20 4.75
985 2813 3.370953 CCTGCATATATACCCTTGCCTCC 60.371 52.174 4.09 0.00 34.20 4.30
986 2814 2.236146 TGCATATATACCCTTGCCTCCG 59.764 50.000 4.09 0.00 34.20 4.63
987 2815 2.906354 CATATATACCCTTGCCTCCGC 58.094 52.381 0.00 0.00 0.00 5.54
988 2816 1.272807 TATATACCCTTGCCTCCGCC 58.727 55.000 0.00 0.00 0.00 6.13
989 2817 1.827399 ATATACCCTTGCCTCCGCCG 61.827 60.000 0.00 0.00 0.00 6.46
1003 2831 4.919987 GCCGCGCTCCTACCGTAC 62.920 72.222 5.56 0.00 0.00 3.67
1004 2832 3.207669 CCGCGCTCCTACCGTACT 61.208 66.667 5.56 0.00 0.00 2.73
1006 2834 1.278038 CGCGCTCCTACCGTACTAC 59.722 63.158 5.56 0.00 0.00 2.73
1008 2836 1.869754 CGCGCTCCTACCGTACTACTA 60.870 57.143 5.56 0.00 0.00 1.82
1009 2837 1.529012 GCGCTCCTACCGTACTACTAC 59.471 57.143 0.00 0.00 0.00 2.73
1014 2842 4.799255 GCTCCTACCGTACTACTACCTCTC 60.799 54.167 0.00 0.00 0.00 3.20
1015 2843 4.290093 TCCTACCGTACTACTACCTCTCA 58.710 47.826 0.00 0.00 0.00 3.27
1016 2844 4.904251 TCCTACCGTACTACTACCTCTCAT 59.096 45.833 0.00 0.00 0.00 2.90
1017 2845 6.077993 TCCTACCGTACTACTACCTCTCATA 58.922 44.000 0.00 0.00 0.00 2.15
1019 2847 4.640364 ACCGTACTACTACCTCTCATAGC 58.360 47.826 0.00 0.00 0.00 2.97
1022 2850 5.352016 CCGTACTACTACCTCTCATAGCATC 59.648 48.000 0.00 0.00 0.00 3.91
1023 2851 5.932883 CGTACTACTACCTCTCATAGCATCA 59.067 44.000 0.00 0.00 0.00 3.07
1024 2852 6.128499 CGTACTACTACCTCTCATAGCATCAC 60.128 46.154 0.00 0.00 0.00 3.06
1025 2853 4.757657 ACTACTACCTCTCATAGCATCACG 59.242 45.833 0.00 0.00 0.00 4.35
1026 2854 3.821748 ACTACCTCTCATAGCATCACGA 58.178 45.455 0.00 0.00 0.00 4.35
1027 2855 3.566322 ACTACCTCTCATAGCATCACGAC 59.434 47.826 0.00 0.00 0.00 4.34
1028 2856 1.335182 ACCTCTCATAGCATCACGACG 59.665 52.381 0.00 0.00 0.00 5.12
1029 2857 1.604278 CCTCTCATAGCATCACGACGA 59.396 52.381 0.00 0.00 0.00 4.20
1030 2858 2.227626 CCTCTCATAGCATCACGACGAT 59.772 50.000 0.00 0.00 33.27 3.73
1037 2865 1.518352 CATCACGACGATGGCCGAA 60.518 57.895 0.00 0.00 46.73 4.30
1038 2866 1.518572 ATCACGACGATGGCCGAAC 60.519 57.895 0.00 0.00 41.76 3.95
1041 2869 2.025418 ACGACGATGGCCGAACAAC 61.025 57.895 0.00 0.00 41.76 3.32
1042 2870 2.736682 CGACGATGGCCGAACAACC 61.737 63.158 0.00 0.00 41.76 3.77
1044 2872 3.496131 CGATGGCCGAACAACCCG 61.496 66.667 0.00 0.00 41.76 5.28
1045 2873 2.046700 GATGGCCGAACAACCCGA 60.047 61.111 0.00 0.00 0.00 5.14
1046 2874 2.359478 ATGGCCGAACAACCCGAC 60.359 61.111 0.00 0.00 0.00 4.79
1047 2875 2.798148 GATGGCCGAACAACCCGACT 62.798 60.000 0.00 0.00 0.00 4.18
1048 2876 3.047877 GGCCGAACAACCCGACTG 61.048 66.667 0.00 0.00 0.00 3.51
1049 2877 3.047877 GCCGAACAACCCGACTGG 61.048 66.667 0.00 0.00 41.37 4.00
1052 2880 2.317609 CGAACAACCCGACTGGCTG 61.318 63.158 0.00 0.00 37.83 4.85
1053 2881 1.070786 GAACAACCCGACTGGCTGA 59.929 57.895 0.00 0.00 37.83 4.26
1054 2882 0.534203 GAACAACCCGACTGGCTGAA 60.534 55.000 0.00 0.00 37.83 3.02
1055 2883 0.535102 AACAACCCGACTGGCTGAAG 60.535 55.000 0.00 0.00 37.83 3.02
1056 2884 2.032681 AACCCGACTGGCTGAAGC 59.967 61.111 0.00 0.00 37.83 3.86
1057 2885 2.520536 AACCCGACTGGCTGAAGCT 61.521 57.895 1.74 0.00 41.70 3.74
1058 2886 2.125350 CCCGACTGGCTGAAGCTC 60.125 66.667 1.74 0.00 41.70 4.09
1060 2888 2.125350 CGACTGGCTGAAGCTCCC 60.125 66.667 1.74 0.00 41.70 4.30
1061 2889 2.125350 GACTGGCTGAAGCTCCCG 60.125 66.667 1.74 0.00 41.70 5.14
1063 2891 2.125350 CTGGCTGAAGCTCCCGTC 60.125 66.667 1.74 0.00 41.70 4.79
1064 2892 3.997064 CTGGCTGAAGCTCCCGTCG 62.997 68.421 1.74 0.00 41.70 5.12
1065 2893 4.821589 GGCTGAAGCTCCCGTCGG 62.822 72.222 3.60 3.60 41.70 4.79
1066 2894 3.760035 GCTGAAGCTCCCGTCGGA 61.760 66.667 14.39 0.00 38.21 4.55
1068 2896 3.358076 CTGAAGCTCCCGTCGGACC 62.358 68.421 14.39 0.00 33.32 4.46
1069 2897 3.069318 GAAGCTCCCGTCGGACCT 61.069 66.667 14.39 2.49 33.32 3.85
1081 3480 1.995626 CGGACCTCCTGGAACCCAT 60.996 63.158 0.00 0.00 37.04 4.00
1082 3481 1.915983 GGACCTCCTGGAACCCATC 59.084 63.158 0.00 0.00 37.04 3.51
1083 3482 1.522569 GACCTCCTGGAACCCATCG 59.477 63.158 0.00 0.00 37.04 3.84
1085 3484 2.190578 CTCCTGGAACCCATCGGC 59.809 66.667 0.00 0.00 30.82 5.54
1112 3511 4.889856 CGCGATGCCGTCATGGGA 62.890 66.667 0.00 0.00 45.08 4.37
1114 3513 2.501128 CGATGCCGTCATGGGAGT 59.499 61.111 0.00 0.00 43.72 3.85
1115 3514 1.592669 CGATGCCGTCATGGGAGTC 60.593 63.158 0.00 0.00 43.72 3.36
1116 3515 1.592669 GATGCCGTCATGGGAGTCG 60.593 63.158 0.00 0.00 43.72 4.18
1117 3516 3.740128 ATGCCGTCATGGGAGTCGC 62.740 63.158 0.00 0.00 43.72 5.19
1119 3518 3.770040 CCGTCATGGGAGTCGCCA 61.770 66.667 4.54 3.80 38.95 5.69
1120 3519 2.509336 CGTCATGGGAGTCGCCAC 60.509 66.667 4.54 0.00 38.95 5.01
1121 3520 2.125106 GTCATGGGAGTCGCCACC 60.125 66.667 4.54 0.00 38.95 4.61
1122 3521 2.284625 TCATGGGAGTCGCCACCT 60.285 61.111 4.54 0.00 38.95 4.00
1123 3522 1.918293 TCATGGGAGTCGCCACCTT 60.918 57.895 4.54 0.00 38.95 3.50
1134 3533 3.382832 CCACCTTCCGCTCCGTCT 61.383 66.667 0.00 0.00 0.00 4.18
1135 3534 2.125912 CACCTTCCGCTCCGTCTG 60.126 66.667 0.00 0.00 0.00 3.51
1136 3535 4.070552 ACCTTCCGCTCCGTCTGC 62.071 66.667 0.00 0.00 0.00 4.26
1137 3536 4.821589 CCTTCCGCTCCGTCTGCC 62.822 72.222 0.00 0.00 0.00 4.85
1381 3998 5.282510 GTGGTCATCTCGTATTCTCGAAAT 58.717 41.667 0.00 0.00 39.34 2.17
1447 6868 6.437793 ACTGGAGCTACAAACATACTACTTCT 59.562 38.462 0.00 0.00 0.00 2.85
2064 7538 0.387202 ACGCTCCCGATCATGAAGAG 59.613 55.000 0.00 5.33 38.29 2.85
2084 7566 1.897423 CGCCTACAGACATGGGTGA 59.103 57.895 0.00 0.00 0.00 4.02
2090 7572 1.067295 ACAGACATGGGTGATGGTGT 58.933 50.000 0.00 0.00 36.23 4.16
2187 7673 5.814783 ACGTACCTCGAATTATCACACTAC 58.185 41.667 0.00 0.00 42.86 2.73
2208 7694 0.322906 TCACATTTGCCGCCCATGTA 60.323 50.000 4.60 0.00 29.78 2.29
2216 7702 2.279918 CGCCCATGTACCGCCTAC 60.280 66.667 0.00 0.00 0.00 3.18
2220 7706 0.677842 CCCATGTACCGCCTACTACC 59.322 60.000 0.00 0.00 0.00 3.18
2487 7973 2.048503 CCGGCGACCTCGAACTTT 60.049 61.111 9.30 0.00 43.02 2.66
2515 8001 3.923864 ATTCCGGCGGCGATGCTA 61.924 61.111 34.49 12.81 34.52 3.49
2523 8009 1.299850 CGGCGATGCTACGGATGAA 60.300 57.895 0.00 0.00 0.00 2.57
2709 8195 0.179108 GCGACCACGAGCTATTCCTT 60.179 55.000 0.00 0.00 42.66 3.36
2793 8279 4.654091 TCATGATGATTACTCGTCTGCA 57.346 40.909 0.00 0.00 38.12 4.41
2808 8294 1.272490 TCTGCAGTAACTAGTTGCGCT 59.728 47.619 26.66 17.06 40.62 5.92
2835 8334 4.149046 GCGTACTGCTACATTATGAAGAGC 59.851 45.833 0.00 5.49 41.73 4.09
3115 8621 3.051327 CGCTTGTTGATTGCATGTGAAA 58.949 40.909 0.00 0.00 0.00 2.69
3382 8897 7.006865 GGACTAGACTAGAAAAAGTCCCTTT 57.993 40.000 16.55 0.00 46.95 3.11
3709 9226 9.001542 CAGAAGTTCATCTCTCTCTTGAAAAAT 57.998 33.333 5.50 0.00 31.66 1.82
3818 9350 0.250234 ATGAGTGCATGCTACACCGT 59.750 50.000 20.33 9.62 38.87 4.83
3857 9389 4.632538 AGAAGCTTACGCAAAACAAACT 57.367 36.364 0.00 0.00 39.10 2.66
3972 9505 6.818644 CACCATCCCATTTAAGATACCTATCG 59.181 42.308 0.00 0.00 37.76 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.427193 GTCCAACACAAACACAAACACAC 59.573 43.478 0.00 0.00 0.00 3.82
1 2 3.553096 GGTCCAACACAAACACAAACACA 60.553 43.478 0.00 0.00 0.00 3.72
2 3 2.990514 GGTCCAACACAAACACAAACAC 59.009 45.455 0.00 0.00 0.00 3.32
3 4 2.351835 CGGTCCAACACAAACACAAACA 60.352 45.455 0.00 0.00 0.00 2.83
4 5 2.255316 CGGTCCAACACAAACACAAAC 58.745 47.619 0.00 0.00 0.00 2.93
5 6 1.887198 ACGGTCCAACACAAACACAAA 59.113 42.857 0.00 0.00 0.00 2.83
6 7 1.200252 CACGGTCCAACACAAACACAA 59.800 47.619 0.00 0.00 0.00 3.33
7 8 0.805614 CACGGTCCAACACAAACACA 59.194 50.000 0.00 0.00 0.00 3.72
8 9 0.524604 GCACGGTCCAACACAAACAC 60.525 55.000 0.00 0.00 0.00 3.32
9 10 0.678366 AGCACGGTCCAACACAAACA 60.678 50.000 0.00 0.00 0.00 2.83
10 11 0.454196 AAGCACGGTCCAACACAAAC 59.546 50.000 0.00 0.00 0.00 2.93
11 12 0.453793 CAAGCACGGTCCAACACAAA 59.546 50.000 0.00 0.00 0.00 2.83
12 13 1.999071 GCAAGCACGGTCCAACACAA 61.999 55.000 0.00 0.00 0.00 3.33
13 14 2.477176 GCAAGCACGGTCCAACACA 61.477 57.895 0.00 0.00 0.00 3.72
14 15 2.331451 GCAAGCACGGTCCAACAC 59.669 61.111 0.00 0.00 0.00 3.32
15 16 3.276091 CGCAAGCACGGTCCAACA 61.276 61.111 0.00 0.00 0.00 3.33
23 24 3.964875 AAAGCCACCGCAAGCACG 61.965 61.111 0.00 0.00 37.52 5.34
24 25 2.355009 CAAAGCCACCGCAAGCAC 60.355 61.111 0.00 0.00 37.52 4.40
25 26 2.518112 TCAAAGCCACCGCAAGCA 60.518 55.556 0.00 0.00 37.52 3.91
26 27 2.256461 CTCAAAGCCACCGCAAGC 59.744 61.111 0.00 0.00 37.52 4.01
27 28 1.165907 TCACTCAAAGCCACCGCAAG 61.166 55.000 0.00 0.00 37.52 4.01
28 29 1.153066 TCACTCAAAGCCACCGCAA 60.153 52.632 0.00 0.00 37.52 4.85
29 30 1.597854 CTCACTCAAAGCCACCGCA 60.598 57.895 0.00 0.00 37.52 5.69
30 31 1.598130 ACTCACTCAAAGCCACCGC 60.598 57.895 0.00 0.00 0.00 5.68
31 32 0.532862 ACACTCACTCAAAGCCACCG 60.533 55.000 0.00 0.00 0.00 4.94
32 33 0.947244 CACACTCACTCAAAGCCACC 59.053 55.000 0.00 0.00 0.00 4.61
33 34 1.331756 CACACACTCACTCAAAGCCAC 59.668 52.381 0.00 0.00 0.00 5.01
34 35 1.065491 ACACACACTCACTCAAAGCCA 60.065 47.619 0.00 0.00 0.00 4.75
35 36 1.331756 CACACACACTCACTCAAAGCC 59.668 52.381 0.00 0.00 0.00 4.35
36 37 1.331756 CCACACACACTCACTCAAAGC 59.668 52.381 0.00 0.00 0.00 3.51
37 38 2.352651 CACCACACACACTCACTCAAAG 59.647 50.000 0.00 0.00 0.00 2.77
38 39 2.290008 ACACCACACACACTCACTCAAA 60.290 45.455 0.00 0.00 0.00 2.69
39 40 1.277842 ACACCACACACACTCACTCAA 59.722 47.619 0.00 0.00 0.00 3.02
40 41 0.901827 ACACCACACACACTCACTCA 59.098 50.000 0.00 0.00 0.00 3.41
41 42 1.290203 CACACCACACACACTCACTC 58.710 55.000 0.00 0.00 0.00 3.51
42 43 0.613260 ACACACCACACACACTCACT 59.387 50.000 0.00 0.00 0.00 3.41
43 44 1.130373 CAACACACCACACACACTCAC 59.870 52.381 0.00 0.00 0.00 3.51
44 45 1.447945 CAACACACCACACACACTCA 58.552 50.000 0.00 0.00 0.00 3.41
45 46 0.732571 CCAACACACCACACACACTC 59.267 55.000 0.00 0.00 0.00 3.51
46 47 0.037590 ACCAACACACCACACACACT 59.962 50.000 0.00 0.00 0.00 3.55
47 48 0.170116 CACCAACACACCACACACAC 59.830 55.000 0.00 0.00 0.00 3.82
48 49 0.250945 ACACCAACACACCACACACA 60.251 50.000 0.00 0.00 0.00 3.72
49 50 0.170116 CACACCAACACACCACACAC 59.830 55.000 0.00 0.00 0.00 3.82
50 51 0.036875 TCACACCAACACACCACACA 59.963 50.000 0.00 0.00 0.00 3.72
51 52 0.450184 GTCACACCAACACACCACAC 59.550 55.000 0.00 0.00 0.00 3.82
52 53 0.036875 TGTCACACCAACACACCACA 59.963 50.000 0.00 0.00 0.00 4.17
53 54 1.388547 ATGTCACACCAACACACCAC 58.611 50.000 0.00 0.00 0.00 4.16
54 55 1.747924 CAATGTCACACCAACACACCA 59.252 47.619 0.00 0.00 0.00 4.17
55 56 2.020720 TCAATGTCACACCAACACACC 58.979 47.619 0.00 0.00 0.00 4.16
56 57 3.988379 ATCAATGTCACACCAACACAC 57.012 42.857 0.00 0.00 0.00 3.82
57 58 5.129634 AGTTATCAATGTCACACCAACACA 58.870 37.500 0.00 0.00 0.00 3.72
58 59 5.689383 AGTTATCAATGTCACACCAACAC 57.311 39.130 0.00 0.00 0.00 3.32
59 60 6.096141 ACAAAGTTATCAATGTCACACCAACA 59.904 34.615 0.00 0.00 0.00 3.33
60 61 6.417635 CACAAAGTTATCAATGTCACACCAAC 59.582 38.462 0.00 0.00 0.00 3.77
61 62 6.502652 CACAAAGTTATCAATGTCACACCAA 58.497 36.000 0.00 0.00 0.00 3.67
62 63 5.507149 GCACAAAGTTATCAATGTCACACCA 60.507 40.000 0.00 0.00 0.00 4.17
63 64 4.917415 GCACAAAGTTATCAATGTCACACC 59.083 41.667 0.00 0.00 0.00 4.16
64 65 5.762045 AGCACAAAGTTATCAATGTCACAC 58.238 37.500 0.00 0.00 0.00 3.82
65 66 6.207928 CAAGCACAAAGTTATCAATGTCACA 58.792 36.000 0.00 0.00 0.00 3.58
66 67 5.630680 CCAAGCACAAAGTTATCAATGTCAC 59.369 40.000 0.00 0.00 0.00 3.67
67 68 5.301551 ACCAAGCACAAAGTTATCAATGTCA 59.698 36.000 0.00 0.00 0.00 3.58
68 69 5.630680 CACCAAGCACAAAGTTATCAATGTC 59.369 40.000 0.00 0.00 0.00 3.06
69 70 5.509501 CCACCAAGCACAAAGTTATCAATGT 60.510 40.000 0.00 0.00 0.00 2.71
70 71 4.925054 CCACCAAGCACAAAGTTATCAATG 59.075 41.667 0.00 0.00 0.00 2.82
71 72 4.588528 ACCACCAAGCACAAAGTTATCAAT 59.411 37.500 0.00 0.00 0.00 2.57
72 73 3.957497 ACCACCAAGCACAAAGTTATCAA 59.043 39.130 0.00 0.00 0.00 2.57
73 74 3.561143 ACCACCAAGCACAAAGTTATCA 58.439 40.909 0.00 0.00 0.00 2.15
74 75 4.298332 CAACCACCAAGCACAAAGTTATC 58.702 43.478 0.00 0.00 0.00 1.75
75 76 3.492482 GCAACCACCAAGCACAAAGTTAT 60.492 43.478 0.00 0.00 0.00 1.89
76 77 2.159170 GCAACCACCAAGCACAAAGTTA 60.159 45.455 0.00 0.00 0.00 2.24
77 78 1.405391 GCAACCACCAAGCACAAAGTT 60.405 47.619 0.00 0.00 0.00 2.66
78 79 0.175531 GCAACCACCAAGCACAAAGT 59.824 50.000 0.00 0.00 0.00 2.66
79 80 0.461135 AGCAACCACCAAGCACAAAG 59.539 50.000 0.00 0.00 0.00 2.77
80 81 0.901124 AAGCAACCACCAAGCACAAA 59.099 45.000 0.00 0.00 0.00 2.83
81 82 0.901124 AAAGCAACCACCAAGCACAA 59.099 45.000 0.00 0.00 0.00 3.33
82 83 1.769026 TAAAGCAACCACCAAGCACA 58.231 45.000 0.00 0.00 0.00 4.57
83 84 3.385193 AATAAAGCAACCACCAAGCAC 57.615 42.857 0.00 0.00 0.00 4.40
84 85 5.736951 ATAAATAAAGCAACCACCAAGCA 57.263 34.783 0.00 0.00 0.00 3.91
85 86 8.185003 CTTTATAAATAAAGCAACCACCAAGC 57.815 34.615 9.01 0.00 41.69 4.01
97 98 9.537173 AGCTTTCGCCCCGCTTTATAAATAAAG 62.537 40.741 15.20 15.20 43.10 1.85
98 99 5.733937 GCTTTCGCCCCGCTTTATAAATAAA 60.734 40.000 0.00 0.00 0.00 1.40
99 100 4.261280 GCTTTCGCCCCGCTTTATAAATAA 60.261 41.667 0.00 0.00 0.00 1.40
100 101 3.251487 GCTTTCGCCCCGCTTTATAAATA 59.749 43.478 0.00 0.00 0.00 1.40
101 102 2.034179 GCTTTCGCCCCGCTTTATAAAT 59.966 45.455 0.00 0.00 0.00 1.40
102 103 1.402613 GCTTTCGCCCCGCTTTATAAA 59.597 47.619 0.00 0.00 0.00 1.40
103 104 1.018910 GCTTTCGCCCCGCTTTATAA 58.981 50.000 0.00 0.00 0.00 0.98
104 105 0.179468 AGCTTTCGCCCCGCTTTATA 59.821 50.000 0.00 0.00 36.60 0.98
105 106 0.679960 AAGCTTTCGCCCCGCTTTAT 60.680 50.000 0.00 0.00 40.82 1.40
106 107 1.302993 AAGCTTTCGCCCCGCTTTA 60.303 52.632 0.00 0.00 40.82 1.85
107 108 2.200337 AAAGCTTTCGCCCCGCTTT 61.200 52.632 5.69 2.93 45.95 3.51
108 109 1.744320 AAAAAGCTTTCGCCCCGCTT 61.744 50.000 13.10 0.00 45.13 4.68
109 110 2.142357 GAAAAAGCTTTCGCCCCGCT 62.142 55.000 13.10 0.00 36.60 5.52
110 111 1.733041 GAAAAAGCTTTCGCCCCGC 60.733 57.895 13.10 0.00 36.60 6.13
111 112 4.552278 GAAAAAGCTTTCGCCCCG 57.448 55.556 13.10 0.00 36.60 5.73
117 118 4.275196 AGGACACTTACCGAAAAAGCTTTC 59.725 41.667 13.10 0.00 38.06 2.62
118 119 4.036380 CAGGACACTTACCGAAAAAGCTTT 59.964 41.667 5.69 5.69 0.00 3.51
119 120 3.564225 CAGGACACTTACCGAAAAAGCTT 59.436 43.478 0.00 0.00 0.00 3.74
120 121 3.139077 CAGGACACTTACCGAAAAAGCT 58.861 45.455 0.00 0.00 0.00 3.74
121 122 3.059120 GTCAGGACACTTACCGAAAAAGC 60.059 47.826 0.00 0.00 0.00 3.51
122 123 3.497262 GGTCAGGACACTTACCGAAAAAG 59.503 47.826 1.41 0.00 31.75 2.27
123 124 3.118334 TGGTCAGGACACTTACCGAAAAA 60.118 43.478 1.41 0.00 42.72 1.94
124 125 2.435069 TGGTCAGGACACTTACCGAAAA 59.565 45.455 1.41 0.00 42.72 2.29
125 126 2.040939 TGGTCAGGACACTTACCGAAA 58.959 47.619 1.41 0.00 42.72 3.46
126 127 1.707106 TGGTCAGGACACTTACCGAA 58.293 50.000 1.41 0.00 42.72 4.30
127 128 1.342174 GTTGGTCAGGACACTTACCGA 59.658 52.381 1.41 0.00 42.72 4.69
128 129 1.069513 TGTTGGTCAGGACACTTACCG 59.930 52.381 1.41 0.00 42.72 4.02
129 130 2.767505 CTGTTGGTCAGGACACTTACC 58.232 52.381 1.41 0.00 40.67 2.85
139 140 6.633500 TCAGTTATTTTTCCTGTTGGTCAG 57.367 37.500 0.00 0.00 43.27 3.51
140 141 7.004086 AGATCAGTTATTTTTCCTGTTGGTCA 58.996 34.615 0.00 0.00 34.23 4.02
141 142 7.454260 AGATCAGTTATTTTTCCTGTTGGTC 57.546 36.000 0.00 0.00 34.23 4.02
200 206 5.628666 GCCGACTAGTCATAGGGTATAGCTA 60.629 48.000 22.37 0.00 32.90 3.32
250 267 2.917227 TGCTGCACCTCGTCCTCA 60.917 61.111 0.00 0.00 0.00 3.86
272 289 0.690762 ACTACAACATCAAGGGCGGT 59.309 50.000 0.00 0.00 0.00 5.68
275 292 2.749621 CAAGGACTACAACATCAAGGGC 59.250 50.000 0.00 0.00 0.00 5.19
487 504 2.441822 GAAGGAGTCCACGCTGCACT 62.442 60.000 12.86 0.00 0.00 4.40
497 514 0.249911 ACAACGTGCAGAAGGAGTCC 60.250 55.000 0.00 0.00 0.00 3.85
623 649 1.078848 GGAGAGCAGCGACACCATT 60.079 57.895 0.00 0.00 0.00 3.16
650 676 4.202264 ACCTTGACGGATAAGACCATCATC 60.202 45.833 0.00 0.00 32.25 2.92
651 677 3.711704 ACCTTGACGGATAAGACCATCAT 59.288 43.478 0.00 0.00 32.25 2.45
662 688 3.814577 CGTGAAGACCTTGACGGAT 57.185 52.632 12.68 0.00 44.30 4.18
728 1045 0.991770 CAAAGCAACCGAGCGAAACG 60.992 55.000 0.00 0.00 40.15 3.60
771 1088 6.722301 TCGATCGATATAAATATCCACGACC 58.278 40.000 15.15 0.00 36.62 4.79
772 1089 8.424628 GATCGATCGATATAAATATCCACGAC 57.575 38.462 29.45 8.39 37.60 4.34
798 1115 0.458716 CCCGACTCGAAAGCCTCTTC 60.459 60.000 0.00 0.00 0.00 2.87
799 1116 1.186267 ACCCGACTCGAAAGCCTCTT 61.186 55.000 0.00 0.00 0.00 2.85
800 1117 1.596895 GACCCGACTCGAAAGCCTCT 61.597 60.000 0.00 0.00 0.00 3.69
801 1118 1.153804 GACCCGACTCGAAAGCCTC 60.154 63.158 0.00 0.00 0.00 4.70
802 1119 2.971452 GACCCGACTCGAAAGCCT 59.029 61.111 0.00 0.00 0.00 4.58
803 1120 2.506438 CGACCCGACTCGAAAGCC 60.506 66.667 0.00 0.00 35.58 4.35
804 1121 2.506438 CCGACCCGACTCGAAAGC 60.506 66.667 0.00 0.00 35.58 3.51
805 1122 2.181021 CCCGACCCGACTCGAAAG 59.819 66.667 0.00 0.00 35.58 2.62
806 1123 2.282391 TCCCGACCCGACTCGAAA 60.282 61.111 0.00 0.00 35.58 3.46
807 1124 2.749044 CTCCCGACCCGACTCGAA 60.749 66.667 0.00 0.00 35.58 3.71
808 1125 3.965539 GACTCCCGACCCGACTCGA 62.966 68.421 0.00 0.00 35.58 4.04
810 1127 3.139469 GGACTCCCGACCCGACTC 61.139 72.222 0.00 0.00 0.00 3.36
835 1152 2.819595 ATGCCACGGCGTGTCATC 60.820 61.111 34.74 21.54 45.51 2.92
845 1162 2.516589 CGTGACGGATCATGCCACG 61.517 63.158 10.59 10.59 43.24 4.94
846 1163 3.398920 CGTGACGGATCATGCCAC 58.601 61.111 0.00 0.00 37.14 5.01
863 1180 3.771160 ATGACCACGGCGGAGTCC 61.771 66.667 23.03 0.00 38.63 3.85
864 1181 2.509336 CATGACCACGGCGGAGTC 60.509 66.667 20.38 20.38 38.63 3.36
865 1182 4.760047 GCATGACCACGGCGGAGT 62.760 66.667 13.24 7.99 38.63 3.85
871 1188 0.179084 AGAATACGGCATGACCACGG 60.179 55.000 0.00 0.00 39.03 4.94
872 1189 1.209128 GAGAATACGGCATGACCACG 58.791 55.000 0.00 0.00 39.03 4.94
873 1190 2.309528 TGAGAATACGGCATGACCAC 57.690 50.000 0.00 0.00 39.03 4.16
878 1195 3.879295 ACCTGATTTGAGAATACGGCATG 59.121 43.478 0.00 0.00 0.00 4.06
879 1196 4.156455 ACCTGATTTGAGAATACGGCAT 57.844 40.909 0.00 0.00 0.00 4.40
880 1197 3.627395 ACCTGATTTGAGAATACGGCA 57.373 42.857 0.00 0.00 0.00 5.69
881 1198 4.508124 CACTACCTGATTTGAGAATACGGC 59.492 45.833 0.00 0.00 0.00 5.68
882 1199 5.661458 ACACTACCTGATTTGAGAATACGG 58.339 41.667 0.00 0.00 0.00 4.02
883 1200 6.255887 GGAACACTACCTGATTTGAGAATACG 59.744 42.308 0.00 0.00 0.00 3.06
884 1201 6.255887 CGGAACACTACCTGATTTGAGAATAC 59.744 42.308 0.00 0.00 0.00 1.89
886 1203 5.046591 TCGGAACACTACCTGATTTGAGAAT 60.047 40.000 0.00 0.00 0.00 2.40
888 1205 3.830178 TCGGAACACTACCTGATTTGAGA 59.170 43.478 0.00 0.00 0.00 3.27
889 1206 4.188247 TCGGAACACTACCTGATTTGAG 57.812 45.455 0.00 0.00 0.00 3.02
890 1207 4.676986 CGATCGGAACACTACCTGATTTGA 60.677 45.833 7.38 0.00 0.00 2.69
891 1208 3.551890 CGATCGGAACACTACCTGATTTG 59.448 47.826 7.38 0.00 0.00 2.32
892 1209 3.430374 CCGATCGGAACACTACCTGATTT 60.430 47.826 30.62 0.00 37.50 2.17
893 1210 2.100916 CCGATCGGAACACTACCTGATT 59.899 50.000 30.62 0.00 37.50 2.57
894 1211 1.681793 CCGATCGGAACACTACCTGAT 59.318 52.381 30.62 0.00 37.50 2.90
896 1213 0.102481 CCCGATCGGAACACTACCTG 59.898 60.000 35.42 10.51 37.50 4.00
897 1214 0.324091 ACCCGATCGGAACACTACCT 60.324 55.000 35.42 2.86 37.50 3.08
898 1215 0.533951 AACCCGATCGGAACACTACC 59.466 55.000 35.42 0.00 37.50 3.18
902 1219 4.196965 GGAACCCGATCGGAACAC 57.803 61.111 35.42 20.88 37.50 3.32
909 1226 7.964403 ACAACTTTGTTTATGGGAACCCGATC 61.964 42.308 5.36 0.00 44.57 3.69
912 1229 3.319689 ACAACTTTGTTTATGGGAACCCG 59.680 43.478 5.36 0.00 44.57 5.28
913 1230 4.100344 ACACAACTTTGTTTATGGGAACCC 59.900 41.667 2.46 2.46 45.01 4.11
914 1231 5.270893 ACACAACTTTGTTTATGGGAACC 57.729 39.130 0.00 0.00 45.63 3.62
915 1232 7.383843 CCAATACACAACTTTGTTTATGGGAAC 59.616 37.037 13.38 0.00 43.17 3.62
916 1233 7.437748 CCAATACACAACTTTGTTTATGGGAA 58.562 34.615 13.38 0.00 43.17 3.97
917 1234 6.517529 GCCAATACACAACTTTGTTTATGGGA 60.518 38.462 19.61 0.00 43.17 4.37
918 1235 5.637387 GCCAATACACAACTTTGTTTATGGG 59.363 40.000 14.00 14.00 43.28 4.00
919 1236 5.344665 CGCCAATACACAACTTTGTTTATGG 59.655 40.000 2.33 5.48 39.91 2.74
920 1237 5.164100 GCGCCAATACACAACTTTGTTTATG 60.164 40.000 0.00 0.00 39.91 1.90
921 1238 4.920927 GCGCCAATACACAACTTTGTTTAT 59.079 37.500 0.00 0.00 39.91 1.40
922 1239 4.036971 AGCGCCAATACACAACTTTGTTTA 59.963 37.500 2.29 0.00 39.91 2.01
925 1242 1.953686 AGCGCCAATACACAACTTTGT 59.046 42.857 2.29 0.00 43.36 2.83
926 1243 2.704725 AGCGCCAATACACAACTTTG 57.295 45.000 2.29 0.00 0.00 2.77
927 1244 3.142951 TGTAGCGCCAATACACAACTTT 58.857 40.909 2.29 0.00 0.00 2.66
928 1245 2.773487 TGTAGCGCCAATACACAACTT 58.227 42.857 2.29 0.00 0.00 2.66
935 1252 6.780706 ATATTGTAGTTGTAGCGCCAATAC 57.219 37.500 2.29 0.06 30.26 1.89
936 1253 7.663827 AGTATATTGTAGTTGTAGCGCCAATA 58.336 34.615 2.29 8.81 31.57 1.90
937 1254 6.522054 AGTATATTGTAGTTGTAGCGCCAAT 58.478 36.000 2.29 6.63 0.00 3.16
938 1255 5.909477 AGTATATTGTAGTTGTAGCGCCAA 58.091 37.500 2.29 0.00 0.00 4.52
940 1257 4.922103 GGAGTATATTGTAGTTGTAGCGCC 59.078 45.833 2.29 0.00 0.00 6.53
942 1259 6.150318 CAGGGAGTATATTGTAGTTGTAGCG 58.850 44.000 0.00 0.00 0.00 4.26
944 1261 7.050970 TGCAGGGAGTATATTGTAGTTGTAG 57.949 40.000 0.00 0.00 0.00 2.74
946 1263 5.950544 TGCAGGGAGTATATTGTAGTTGT 57.049 39.130 0.00 0.00 0.00 3.32
957 2785 5.131142 GCAAGGGTATATATGCAGGGAGTAT 59.869 44.000 3.10 0.00 38.63 2.12
958 2786 4.469945 GCAAGGGTATATATGCAGGGAGTA 59.530 45.833 3.10 0.00 38.63 2.59
959 2787 3.264450 GCAAGGGTATATATGCAGGGAGT 59.736 47.826 3.10 0.00 38.63 3.85
963 2791 3.370953 GGAGGCAAGGGTATATATGCAGG 60.371 52.174 8.02 0.00 40.51 4.85
964 2792 3.679917 CGGAGGCAAGGGTATATATGCAG 60.680 52.174 8.02 0.00 40.51 4.41
986 2814 4.919987 GTACGGTAGGAGCGCGGC 62.920 72.222 8.83 0.00 43.79 6.53
987 2815 1.889105 TAGTACGGTAGGAGCGCGG 60.889 63.158 8.83 0.00 43.79 6.46
988 2816 1.156645 AGTAGTACGGTAGGAGCGCG 61.157 60.000 0.00 0.00 43.79 6.86
989 2817 1.529012 GTAGTAGTACGGTAGGAGCGC 59.471 57.143 0.00 0.00 43.79 5.92
990 2818 2.139118 GGTAGTAGTACGGTAGGAGCG 58.861 57.143 1.63 0.00 45.69 5.03
991 2819 3.070878 AGAGGTAGTAGTACGGTAGGAGC 59.929 52.174 1.63 0.00 0.00 4.70
994 2822 4.679373 TGAGAGGTAGTAGTACGGTAGG 57.321 50.000 1.63 0.00 0.00 3.18
995 2823 5.868801 GCTATGAGAGGTAGTAGTACGGTAG 59.131 48.000 1.63 0.43 0.00 3.18
997 2825 4.102210 TGCTATGAGAGGTAGTAGTACGGT 59.898 45.833 1.63 0.00 0.00 4.83
998 2826 4.639334 TGCTATGAGAGGTAGTAGTACGG 58.361 47.826 1.63 0.00 0.00 4.02
999 2827 5.932883 TGATGCTATGAGAGGTAGTAGTACG 59.067 44.000 1.63 0.00 0.00 3.67
1000 2828 6.128499 CGTGATGCTATGAGAGGTAGTAGTAC 60.128 46.154 0.00 0.00 0.00 2.73
1001 2829 5.932883 CGTGATGCTATGAGAGGTAGTAGTA 59.067 44.000 0.00 0.00 0.00 1.82
1003 2831 4.998033 TCGTGATGCTATGAGAGGTAGTAG 59.002 45.833 0.00 0.00 0.00 2.57
1004 2832 4.755629 GTCGTGATGCTATGAGAGGTAGTA 59.244 45.833 0.00 0.00 0.00 1.82
1006 2834 3.364465 CGTCGTGATGCTATGAGAGGTAG 60.364 52.174 0.00 0.00 0.00 3.18
1008 2836 1.335182 CGTCGTGATGCTATGAGAGGT 59.665 52.381 0.00 0.00 0.00 3.85
1009 2837 1.604278 TCGTCGTGATGCTATGAGAGG 59.396 52.381 0.00 0.00 0.00 3.69
1022 2850 2.024868 TTGTTCGGCCATCGTCGTG 61.025 57.895 2.24 0.00 40.32 4.35
1023 2851 2.025418 GTTGTTCGGCCATCGTCGT 61.025 57.895 2.24 0.00 40.32 4.34
1024 2852 2.736682 GGTTGTTCGGCCATCGTCG 61.737 63.158 2.24 0.00 40.32 5.12
1025 2853 2.396157 GGGTTGTTCGGCCATCGTC 61.396 63.158 2.24 0.00 40.32 4.20
1026 2854 2.359478 GGGTTGTTCGGCCATCGT 60.359 61.111 2.24 0.00 40.32 3.73
1027 2855 3.496131 CGGGTTGTTCGGCCATCG 61.496 66.667 2.24 0.00 40.90 3.84
1028 2856 2.046700 TCGGGTTGTTCGGCCATC 60.047 61.111 2.24 0.00 0.00 3.51
1029 2857 2.359478 GTCGGGTTGTTCGGCCAT 60.359 61.111 2.24 0.00 0.00 4.40
1030 2858 3.552384 AGTCGGGTTGTTCGGCCA 61.552 61.111 2.24 0.00 31.99 5.36
1031 2859 3.047877 CAGTCGGGTTGTTCGGCC 61.048 66.667 0.00 0.00 31.99 6.13
1032 2860 3.047877 CCAGTCGGGTTGTTCGGC 61.048 66.667 0.00 0.00 0.00 5.54
1033 2861 3.047877 GCCAGTCGGGTTGTTCGG 61.048 66.667 0.00 0.00 39.65 4.30
1034 2862 2.030562 AGCCAGTCGGGTTGTTCG 59.969 61.111 0.00 0.00 41.43 3.95
1035 2863 3.655481 CAGCCAGTCGGGTTGTTC 58.345 61.111 0.00 0.00 42.67 3.18
1041 2869 2.125350 GAGCTTCAGCCAGTCGGG 60.125 66.667 0.00 0.00 43.38 5.14
1042 2870 2.125350 GGAGCTTCAGCCAGTCGG 60.125 66.667 0.00 0.00 43.38 4.79
1044 2872 2.125350 CGGGAGCTTCAGCCAGTC 60.125 66.667 0.00 0.00 43.38 3.51
1045 2873 2.925170 ACGGGAGCTTCAGCCAGT 60.925 61.111 0.00 0.00 43.38 4.00
1046 2874 2.125350 GACGGGAGCTTCAGCCAG 60.125 66.667 0.00 0.00 43.38 4.85
1047 2875 4.069232 CGACGGGAGCTTCAGCCA 62.069 66.667 0.00 0.00 43.38 4.75
1048 2876 4.821589 CCGACGGGAGCTTCAGCC 62.822 72.222 5.81 0.00 43.38 4.85
1049 2877 3.760035 TCCGACGGGAGCTTCAGC 61.760 66.667 15.25 0.00 37.43 4.26
1056 2884 3.141488 CAGGAGGTCCGACGGGAG 61.141 72.222 15.25 0.00 44.97 4.30
1057 2885 4.753662 CCAGGAGGTCCGACGGGA 62.754 72.222 15.25 0.00 42.08 5.14
1058 2886 4.753662 TCCAGGAGGTCCGACGGG 62.754 72.222 15.25 0.00 42.08 5.28
1060 2888 2.572284 GTTCCAGGAGGTCCGACG 59.428 66.667 0.00 0.00 42.08 5.12
1061 2889 2.657066 GGGTTCCAGGAGGTCCGAC 61.657 68.421 0.00 0.00 42.08 4.79
1063 2891 1.972660 GATGGGTTCCAGGAGGTCCG 61.973 65.000 0.00 0.00 42.08 4.79
1064 2892 1.915983 GATGGGTTCCAGGAGGTCC 59.084 63.158 0.00 0.00 36.75 4.46
1065 2893 1.522569 CGATGGGTTCCAGGAGGTC 59.477 63.158 0.00 0.00 36.75 3.85
1066 2894 1.995626 CCGATGGGTTCCAGGAGGT 60.996 63.158 0.00 0.00 36.75 3.85
1068 2896 2.190578 GCCGATGGGTTCCAGGAG 59.809 66.667 0.00 0.00 36.75 3.69
1069 2897 3.407967 GGCCGATGGGTTCCAGGA 61.408 66.667 0.00 0.00 36.75 3.86
1071 2899 4.856801 CCGGCCGATGGGTTCCAG 62.857 72.222 30.73 0.44 36.75 3.86
1097 3496 1.592669 GACTCCCATGACGGCATCG 60.593 63.158 0.00 0.00 43.02 3.84
1098 3497 1.592669 CGACTCCCATGACGGCATC 60.593 63.158 0.00 0.00 30.68 3.91
1099 3498 2.501128 CGACTCCCATGACGGCAT 59.499 61.111 0.00 0.00 34.29 4.40
1100 3499 4.451150 GCGACTCCCATGACGGCA 62.451 66.667 0.00 0.00 0.00 5.69
1102 3501 3.770040 TGGCGACTCCCATGACGG 61.770 66.667 0.00 0.00 0.00 4.79
1104 3503 2.125106 GGTGGCGACTCCCATGAC 60.125 66.667 0.00 0.00 38.06 3.06
1105 3504 1.899437 GAAGGTGGCGACTCCCATGA 61.899 60.000 5.55 0.00 45.29 3.07
1107 3506 2.670148 GGAAGGTGGCGACTCCCAT 61.670 63.158 5.55 0.00 45.29 4.00
1108 3507 3.319198 GGAAGGTGGCGACTCCCA 61.319 66.667 5.55 0.00 45.29 4.37
1109 3508 4.452733 CGGAAGGTGGCGACTCCC 62.453 72.222 5.55 0.00 45.29 4.30
1112 3511 4.070552 GAGCGGAAGGTGGCGACT 62.071 66.667 0.00 0.00 45.11 4.18
1117 3516 3.382832 AGACGGAGCGGAAGGTGG 61.383 66.667 0.00 0.00 45.11 4.61
1120 3519 4.821589 GGCAGACGGAGCGGAAGG 62.822 72.222 0.00 0.00 0.00 3.46
1381 3998 2.726821 ACCCGATCGGAACACTACTTA 58.273 47.619 35.42 0.00 37.50 2.24
1447 6868 4.651778 GGAGGCAAAGGTATATATGCACA 58.348 43.478 8.02 0.00 40.51 4.57
2064 7538 2.203070 CCCATGTCTGTAGGCGCC 60.203 66.667 21.89 21.89 0.00 6.53
2084 7566 1.002430 AGTCATCTTCGTGCACACCAT 59.998 47.619 18.64 0.00 0.00 3.55
2090 7572 2.479560 CGATACCAGTCATCTTCGTGCA 60.480 50.000 0.00 0.00 0.00 4.57
2187 7673 0.458889 CATGGGCGGCAAATGTGAAG 60.459 55.000 12.47 0.00 0.00 3.02
2364 7850 1.451567 CTCGGACTCGGAGTAGGCA 60.452 63.158 11.27 0.00 36.95 4.75
2487 7973 0.179094 CGCCGGAATGCTTGTACCTA 60.179 55.000 5.05 0.00 0.00 3.08
2701 8187 3.755378 GCATGGTAGCCATCAAGGAATAG 59.245 47.826 0.00 0.00 43.15 1.73
2793 8279 0.736325 CCGCAGCGCAACTAGTTACT 60.736 55.000 11.47 3.53 0.00 2.24
2808 8294 0.456628 TAATGTAGCAGTACGCCGCA 59.543 50.000 7.55 6.89 44.04 5.69
2825 8311 2.640346 TGTACACGCGCTCTTCATAA 57.360 45.000 5.73 0.00 0.00 1.90
2835 8334 1.811217 CGAGATGGCATGTACACGCG 61.811 60.000 3.81 3.53 0.00 6.01
3115 8621 5.121380 AGAGGTATTCAATGCTGTTGGAT 57.879 39.130 2.47 2.47 0.00 3.41
3382 8897 7.319052 TCCTGTTTGGTTACATAGGAACTAA 57.681 36.000 0.00 0.00 40.09 2.24
3493 9008 0.470268 TTAGGGGGTGTTTGGTTGCC 60.470 55.000 0.00 0.00 0.00 4.52
3549 9064 5.105392 GGATGAGTTCTAGCTAGCTATGCAT 60.105 44.000 24.36 20.06 0.00 3.96
3818 9350 6.694447 AGCTTCTTTTGTGTCCGTATAACTA 58.306 36.000 0.00 0.00 0.00 2.24
3857 9389 1.657556 GCCTGCCGTTTTTGCTGTA 59.342 52.632 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.