Multiple sequence alignment - TraesCS1D01G205500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G205500 chr1D 100.000 6285 0 0 1 6285 290804513 290798229 0.000000e+00 11607
1 TraesCS1D01G205500 chr1D 90.448 513 43 4 5778 6285 24040150 24040661 0.000000e+00 671
2 TraesCS1D01G205500 chr1B 93.364 2818 122 23 2882 5644 392109846 392107039 0.000000e+00 4108
3 TraesCS1D01G205500 chr1B 92.733 1844 73 20 766 2585 392111650 392109844 0.000000e+00 2606
4 TraesCS1D01G205500 chr1B 90.538 465 44 0 1 465 437542325 437541861 3.220000e-172 616
5 TraesCS1D01G205500 chr1A 92.406 1791 92 14 766 2541 363052369 363050608 0.000000e+00 2514
6 TraesCS1D01G205500 chr1A 94.055 1228 55 9 4172 5389 363049162 363047943 0.000000e+00 1847
7 TraesCS1D01G205500 chr1A 88.699 1345 103 14 2876 4185 363050509 363049179 0.000000e+00 1596
8 TraesCS1D01G205500 chr1A 80.500 200 13 11 5421 5594 363047951 363047752 5.110000e-26 130
9 TraesCS1D01G205500 chr6D 97.868 469 10 0 1 469 155709200 155708732 0.000000e+00 811
10 TraesCS1D01G205500 chr6D 82.497 777 117 11 3 770 37522837 37522071 0.000000e+00 664
11 TraesCS1D01G205500 chr6D 94.030 268 14 2 501 767 418462351 418462617 7.590000e-109 405
12 TraesCS1D01G205500 chr6D 89.384 292 29 2 2586 2876 56887665 56887375 3.580000e-97 366
13 TraesCS1D01G205500 chr6D 88.889 144 16 0 5633 5776 454578429 454578572 1.800000e-40 178
14 TraesCS1D01G205500 chr5D 97.447 470 12 0 1 470 234833330 234833799 0.000000e+00 802
15 TraesCS1D01G205500 chr5D 90.643 513 46 2 5773 6285 446262224 446261714 0.000000e+00 680
16 TraesCS1D01G205500 chr5D 94.361 266 13 2 503 767 70886835 70887099 2.110000e-109 407
17 TraesCS1D01G205500 chr5D 88.732 142 16 0 5635 5776 13981456 13981315 2.330000e-39 174
18 TraesCS1D01G205500 chr7D 97.441 469 12 0 1 469 634001767 634001299 0.000000e+00 800
19 TraesCS1D01G205500 chr7D 97.797 454 10 0 1 454 593167272 593166819 0.000000e+00 784
20 TraesCS1D01G205500 chr7D 92.385 499 31 3 5773 6270 271744964 271744472 0.000000e+00 704
21 TraesCS1D01G205500 chr7D 92.638 489 35 1 5773 6261 136532803 136532316 0.000000e+00 702
22 TraesCS1D01G205500 chr7D 94.757 267 12 2 505 770 208558116 208557851 1.260000e-111 414
23 TraesCS1D01G205500 chr7D 90.508 295 22 4 2582 2876 448867024 448866736 9.880000e-103 385
24 TraesCS1D01G205500 chr7D 85.522 297 37 5 2583 2876 117461708 117461415 7.920000e-79 305
25 TraesCS1D01G205500 chr7D 91.549 142 10 2 5635 5776 136534486 136534347 1.790000e-45 195
26 TraesCS1D01G205500 chr3D 97.240 471 13 0 1 471 609876965 609877435 0.000000e+00 798
27 TraesCS1D01G205500 chr3D 97.021 470 13 1 1 470 19210555 19210087 0.000000e+00 789
28 TraesCS1D01G205500 chr7B 91.068 515 40 3 5776 6285 624002618 624002105 0.000000e+00 691
29 TraesCS1D01G205500 chr7B 94.382 267 11 4 503 767 693311095 693311359 2.110000e-109 407
30 TraesCS1D01G205500 chr7B 90.635 299 26 2 2578 2876 648908045 648907749 4.570000e-106 396
31 TraesCS1D01G205500 chr7B 84.314 306 37 5 2883 3181 317765284 317765585 7.970000e-74 289
32 TraesCS1D01G205500 chr7B 86.806 144 19 0 5633 5776 726919735 726919592 1.810000e-35 161
33 TraesCS1D01G205500 chr4D 92.137 496 29 5 5773 6258 390280652 390280157 0.000000e+00 691
34 TraesCS1D01G205500 chr4D 87.770 139 16 1 5631 5769 129412252 129412389 1.810000e-35 161
35 TraesCS1D01G205500 chr4B 91.566 498 41 1 5774 6270 380155777 380156274 0.000000e+00 686
36 TraesCS1D01G205500 chr4B 89.161 286 29 1 2583 2868 131704332 131704615 7.750000e-94 355
37 TraesCS1D01G205500 chr2A 92.569 471 33 1 1 469 117356700 117356230 0.000000e+00 675
38 TraesCS1D01G205500 chr2A 86.301 292 37 3 2587 2876 88276468 88276758 1.320000e-81 315
39 TraesCS1D01G205500 chr4A 93.933 445 27 0 25 469 614667075 614667519 0.000000e+00 673
40 TraesCS1D01G205500 chr4A 94.052 269 13 3 501 767 185383518 185383785 7.590000e-109 405
41 TraesCS1D01G205500 chr5A 90.291 515 43 4 5773 6285 459764575 459765084 0.000000e+00 667
42 TraesCS1D01G205500 chr5A 94.030 268 10 6 503 767 696885829 696886093 9.810000e-108 401
43 TraesCS1D01G205500 chr5A 86.149 296 34 6 2583 2876 643045617 643045327 4.730000e-81 313
44 TraesCS1D01G205500 chr2B 90.078 514 50 1 5773 6285 51954827 51955340 0.000000e+00 665
45 TraesCS1D01G205500 chr2B 86.301 146 16 4 5631 5776 405268935 405268794 8.440000e-34 156
46 TraesCS1D01G205500 chr2D 94.340 265 14 1 501 765 591105586 591105849 7.590000e-109 405
47 TraesCS1D01G205500 chr2D 93.309 269 17 1 502 770 630836258 630835991 4.570000e-106 396
48 TraesCS1D01G205500 chr2D 87.586 290 36 0 2587 2876 29517753 29518042 2.810000e-88 337
49 TraesCS1D01G205500 chr2D 86.379 301 35 4 2883 3181 95199075 95198779 2.190000e-84 324
50 TraesCS1D01G205500 chr7A 89.145 304 27 6 2576 2876 16690802 16691102 2.140000e-99 374
51 TraesCS1D01G205500 chr7A 86.620 142 17 2 5635 5776 607612940 607613079 8.440000e-34 156
52 TraesCS1D01G205500 chr5B 85.050 301 38 5 2884 3182 289570643 289570938 3.680000e-77 300
53 TraesCS1D01G205500 chr5B 84.385 301 40 5 2884 3182 118648618 118648323 7.970000e-74 289
54 TraesCS1D01G205500 chr5B 89.655 145 14 1 5632 5776 38184401 38184258 3.870000e-42 183
55 TraesCS1D01G205500 chr3B 86.111 144 20 0 5633 5776 603538373 603538516 8.440000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G205500 chr1D 290798229 290804513 6284 True 11607.00 11607 100.0000 1 6285 1 chr1D.!!$R1 6284
1 TraesCS1D01G205500 chr1D 24040150 24040661 511 False 671.00 671 90.4480 5778 6285 1 chr1D.!!$F1 507
2 TraesCS1D01G205500 chr1B 392107039 392111650 4611 True 3357.00 4108 93.0485 766 5644 2 chr1B.!!$R2 4878
3 TraesCS1D01G205500 chr1A 363047752 363052369 4617 True 1521.75 2514 88.9150 766 5594 4 chr1A.!!$R1 4828
4 TraesCS1D01G205500 chr6D 37522071 37522837 766 True 664.00 664 82.4970 3 770 1 chr6D.!!$R1 767
5 TraesCS1D01G205500 chr5D 446261714 446262224 510 True 680.00 680 90.6430 5773 6285 1 chr5D.!!$R2 512
6 TraesCS1D01G205500 chr7D 136532316 136534486 2170 True 448.50 702 92.0935 5635 6261 2 chr7D.!!$R7 626
7 TraesCS1D01G205500 chr7B 624002105 624002618 513 True 691.00 691 91.0680 5776 6285 1 chr7B.!!$R1 509
8 TraesCS1D01G205500 chr5A 459764575 459765084 509 False 667.00 667 90.2910 5773 6285 1 chr5A.!!$F1 512
9 TraesCS1D01G205500 chr2B 51954827 51955340 513 False 665.00 665 90.0780 5773 6285 1 chr2B.!!$F1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.033504 TCGCGTGCTTCCTCTTCTTT 59.966 50.0 5.77 0.0 0.00 2.52 F
167 168 0.317938 CCGTCGGATCATCTCGTTCC 60.318 60.0 4.91 0.0 0.00 3.62 F
651 655 0.324614 TGAGTGATTCCGCCACACAT 59.675 50.0 0.00 0.0 37.01 3.21 F
1635 1655 0.391228 TTGACTACTGCCAACTGCGA 59.609 50.0 0.00 0.0 45.60 5.10 F
2641 2680 0.321210 CACGGTGACCAAGGCACATA 60.321 55.0 0.74 0.0 37.99 2.29 F
2747 2786 0.041238 ACACTCAATCGGGGGAGAGA 59.959 55.0 0.00 0.0 35.17 3.10 F
3065 3105 0.178831 AGGGGGACTCCAGTTCCAAT 60.179 55.0 6.37 0.0 45.84 3.16 F
4227 4335 1.204146 ACTCACATAGTTGCCGGGAT 58.796 50.0 2.18 0.0 33.35 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1317 1330 0.684535 CAAGGCGAAAATTTGGGGGT 59.315 50.000 0.00 0.00 0.00 4.95 R
1387 1401 1.181786 TCAACGCCCATCAAATTCCC 58.818 50.000 0.00 0.00 0.00 3.97 R
2622 2661 0.321210 TATGTGCCTTGGTCACCGTG 60.321 55.000 10.19 0.00 33.71 4.94 R
2728 2767 0.041238 TCTCTCCCCCGATTGAGTGT 59.959 55.000 0.00 0.00 0.00 3.55 R
4313 4433 0.877071 CAGCGCTGTCCATGAAACTT 59.123 50.000 29.24 0.00 0.00 2.66 R
4665 4786 1.012086 CATGGAGTGGAAGCGTGATG 58.988 55.000 0.00 0.00 0.00 3.07 R
4793 4929 3.061161 CCGTTAGTCGTCAAATTTACGGG 59.939 47.826 14.31 6.71 42.48 5.28 R
5729 5907 1.164041 CGTTTTGCGGGGTCTGACTT 61.164 55.000 7.85 0.00 36.85 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.033504 TCGCGTGCTTCCTCTTCTTT 59.966 50.000 5.77 0.00 0.00 2.52
34 35 4.806330 CGTGCTTCCTCTTCTTTACAGTA 58.194 43.478 0.00 0.00 0.00 2.74
40 41 6.314152 GCTTCCTCTTCTTTACAGTAATCCAC 59.686 42.308 0.00 0.00 0.00 4.02
43 44 5.805994 CCTCTTCTTTACAGTAATCCACGAC 59.194 44.000 0.00 0.00 0.00 4.34
49 50 0.815734 CAGTAATCCACGACTCCGGT 59.184 55.000 0.00 0.00 40.78 5.28
57 58 1.475280 CCACGACTCCGGTCTAATCAA 59.525 52.381 0.00 0.00 40.10 2.57
58 59 2.094390 CCACGACTCCGGTCTAATCAAA 60.094 50.000 0.00 0.00 40.10 2.69
89 90 3.128938 CGTAAGATTCGGAAGACTCACCT 59.871 47.826 0.00 0.00 41.72 4.00
94 95 2.599408 TCGGAAGACTCACCTTAGGT 57.401 50.000 0.00 0.00 32.14 3.08
96 97 4.038271 TCGGAAGACTCACCTTAGGTAA 57.962 45.455 2.52 0.00 30.99 2.85
120 121 1.743252 CCTTCCAAGGTCTGAGCGC 60.743 63.158 0.00 0.00 41.41 5.92
121 122 1.294780 CTTCCAAGGTCTGAGCGCT 59.705 57.895 11.27 11.27 0.00 5.92
123 124 1.471829 TTCCAAGGTCTGAGCGCTGA 61.472 55.000 18.48 5.01 0.00 4.26
125 126 1.291588 CAAGGTCTGAGCGCTGACT 59.708 57.895 18.48 0.00 41.24 3.41
128 129 2.202544 GTCTGAGCGCTGACTCCG 60.203 66.667 18.48 0.00 39.20 4.63
145 146 2.577059 GCCGTCCTCCGATGAACA 59.423 61.111 0.00 0.00 39.56 3.18
148 149 0.739813 CCGTCCTCCGATGAACAACC 60.740 60.000 0.00 0.00 39.56 3.77
163 164 0.595053 CAACCCGTCGGATCATCTCG 60.595 60.000 14.39 0.00 0.00 4.04
167 168 0.317938 CCGTCGGATCATCTCGTTCC 60.318 60.000 4.91 0.00 0.00 3.62
169 170 1.334239 CGTCGGATCATCTCGTTCCTC 60.334 57.143 0.00 0.00 32.03 3.71
172 173 1.069568 CGGATCATCTCGTTCCTCTCG 60.070 57.143 0.00 0.00 32.03 4.04
184 185 4.116328 CTCTCGCCCGCGTGAAGA 62.116 66.667 13.94 6.98 40.57 2.87
190 191 2.885644 CCCGCGTGAAGACCGATG 60.886 66.667 4.92 0.00 0.00 3.84
193 194 4.210304 GCGTGAAGACCGATGCGC 62.210 66.667 0.00 0.00 38.15 6.09
214 215 3.857764 GGATCGTCCGATGGGAGT 58.142 61.111 6.95 0.00 44.97 3.85
217 218 1.606903 GATCGTCCGATGGGAGTACT 58.393 55.000 6.95 0.00 44.97 2.73
219 220 0.812811 TCGTCCGATGGGAGTACTCG 60.813 60.000 16.56 5.67 44.97 4.18
223 224 1.142262 TCCGATGGGAGTACTCGATCA 59.858 52.381 23.30 18.36 37.43 2.92
225 226 2.361119 CCGATGGGAGTACTCGATCAAA 59.639 50.000 23.30 7.09 34.41 2.69
226 227 3.372954 CGATGGGAGTACTCGATCAAAC 58.627 50.000 23.30 15.50 34.41 2.93
235 236 1.060713 CTCGATCAAACGTCGTTGCT 58.939 50.000 12.12 0.00 39.91 3.91
244 245 1.992170 ACGTCGTTGCTACTTCATCC 58.008 50.000 0.00 0.00 0.00 3.51
250 251 3.441222 TCGTTGCTACTTCATCCTCGTTA 59.559 43.478 0.00 0.00 0.00 3.18
259 260 6.150396 ACTTCATCCTCGTTATAACCTGAG 57.850 41.667 10.01 10.89 0.00 3.35
261 262 5.515797 TCATCCTCGTTATAACCTGAGTG 57.484 43.478 10.01 7.22 0.00 3.51
301 302 2.047179 GAAGGTGTCGGTGAGGGC 60.047 66.667 0.00 0.00 0.00 5.19
339 340 2.441532 ATCCCCATCGTCGTCCGT 60.442 61.111 0.00 0.00 37.94 4.69
340 341 2.782222 ATCCCCATCGTCGTCCGTG 61.782 63.158 0.00 0.00 37.94 4.94
342 343 2.202570 CCCATCGTCGTCCGTGTC 60.203 66.667 0.00 0.00 37.94 3.67
346 347 3.358667 ATCGTCGTCCGTGTCGTCG 62.359 63.158 0.00 0.00 39.95 5.12
355 356 2.249309 GTGTCGTCGTCGTCGGAA 59.751 61.111 11.74 0.00 38.33 4.30
361 362 3.129502 TCGTCGTCGGAATCGGCT 61.130 61.111 1.55 0.00 39.11 5.52
364 365 1.657794 GTCGTCGGAATCGGCTAGC 60.658 63.158 6.04 6.04 39.11 3.42
470 474 4.593864 GCCTCGTCGCCCTCATCC 62.594 72.222 0.00 0.00 0.00 3.51
471 475 3.147595 CCTCGTCGCCCTCATCCA 61.148 66.667 0.00 0.00 0.00 3.41
473 477 3.144120 CTCGTCGCCCTCATCCAGG 62.144 68.421 0.00 0.00 43.01 4.45
486 490 5.165961 CTCATCCAGGAACTCTTTTGGTA 57.834 43.478 0.00 0.00 34.60 3.25
487 491 5.165961 TCATCCAGGAACTCTTTTGGTAG 57.834 43.478 0.00 0.00 34.60 3.18
488 492 4.019321 TCATCCAGGAACTCTTTTGGTAGG 60.019 45.833 0.00 0.00 34.60 3.18
489 493 3.593942 TCCAGGAACTCTTTTGGTAGGA 58.406 45.455 0.00 0.00 34.60 2.94
490 494 4.175962 TCCAGGAACTCTTTTGGTAGGAT 58.824 43.478 0.00 0.00 34.60 3.24
491 495 4.019321 TCCAGGAACTCTTTTGGTAGGATG 60.019 45.833 0.00 0.00 34.60 3.51
492 496 4.019321 CCAGGAACTCTTTTGGTAGGATGA 60.019 45.833 0.00 0.00 34.60 2.92
493 497 5.514834 CCAGGAACTCTTTTGGTAGGATGAA 60.515 44.000 0.00 0.00 34.60 2.57
495 499 5.548056 AGGAACTCTTTTGGTAGGATGAAGA 59.452 40.000 0.00 0.00 0.00 2.87
496 500 6.044404 AGGAACTCTTTTGGTAGGATGAAGAA 59.956 38.462 0.00 0.00 0.00 2.52
497 501 6.715264 GGAACTCTTTTGGTAGGATGAAGAAA 59.285 38.462 0.00 0.00 0.00 2.52
500 504 8.341892 ACTCTTTTGGTAGGATGAAGAAATTC 57.658 34.615 0.00 0.00 0.00 2.17
501 505 7.394641 ACTCTTTTGGTAGGATGAAGAAATTCC 59.605 37.037 0.00 0.00 0.00 3.01
502 506 7.470192 TCTTTTGGTAGGATGAAGAAATTCCT 58.530 34.615 0.00 0.00 42.49 3.36
503 507 7.950124 TCTTTTGGTAGGATGAAGAAATTCCTT 59.050 33.333 0.00 0.00 40.37 3.36
505 509 9.594936 TTTTGGTAGGATGAAGAAATTCCTTAA 57.405 29.630 0.00 0.00 40.37 1.85
506 510 9.594936 TTTGGTAGGATGAAGAAATTCCTTAAA 57.405 29.630 0.00 0.00 40.37 1.52
508 512 9.594936 TGGTAGGATGAAGAAATTCCTTAAAAA 57.405 29.630 0.00 0.00 40.37 1.94
547 551 1.448540 CGGCCTCTGCACCAACTAG 60.449 63.158 0.00 0.00 40.13 2.57
558 562 2.483876 CACCAACTAGGGATGCATACG 58.516 52.381 1.96 0.00 43.89 3.06
651 655 0.324614 TGAGTGATTCCGCCACACAT 59.675 50.000 0.00 0.00 37.01 3.21
654 658 0.447801 GTGATTCCGCCACACATCAC 59.552 55.000 0.00 0.00 38.97 3.06
656 660 1.339920 TGATTCCGCCACACATCACAT 60.340 47.619 0.00 0.00 0.00 3.21
744 748 1.303236 TTAGGCTGCACAACCGCAT 60.303 52.632 0.50 0.00 42.06 4.73
767 771 2.116125 AACCACTGAGCCAAGGCC 59.884 61.111 7.62 0.00 43.17 5.19
770 774 2.360852 CACTGAGCCAAGGCCCTG 60.361 66.667 7.62 0.00 43.17 4.45
782 786 2.361737 GCCCTGGCTTTCTGACCC 60.362 66.667 0.00 0.00 38.26 4.46
810 814 3.375922 GTCGTTTGAACTTTGTCCCTTCA 59.624 43.478 0.00 0.00 0.00 3.02
852 860 2.157863 GCTTGTCTTCTGGCGAAGTTAC 59.842 50.000 15.24 9.85 45.47 2.50
853 861 3.654414 CTTGTCTTCTGGCGAAGTTACT 58.346 45.455 15.24 0.00 45.47 2.24
854 862 4.806330 CTTGTCTTCTGGCGAAGTTACTA 58.194 43.478 15.24 6.82 45.47 1.82
855 863 4.170292 TGTCTTCTGGCGAAGTTACTAC 57.830 45.455 15.24 8.83 45.47 2.73
856 864 3.825014 TGTCTTCTGGCGAAGTTACTACT 59.175 43.478 15.24 0.00 45.47 2.57
857 865 5.005740 TGTCTTCTGGCGAAGTTACTACTA 58.994 41.667 15.24 0.00 45.47 1.82
858 866 5.106396 TGTCTTCTGGCGAAGTTACTACTAC 60.106 44.000 15.24 7.30 45.47 2.73
859 867 5.123661 GTCTTCTGGCGAAGTTACTACTACT 59.876 44.000 15.24 0.00 45.47 2.57
860 868 6.314896 GTCTTCTGGCGAAGTTACTACTACTA 59.685 42.308 15.24 0.00 45.47 1.82
933 941 3.016736 CACACTTCACTGTGAGGGTTTT 58.983 45.455 21.74 7.61 43.77 2.43
1107 1120 0.752009 CCGTCTCCATCCTCCTCGAA 60.752 60.000 0.00 0.00 0.00 3.71
1172 1185 0.466124 CCTCCGTTTCCCATCTCTCC 59.534 60.000 0.00 0.00 0.00 3.71
1181 1194 2.427245 CCATCTCTCCGAACCCGCT 61.427 63.158 0.00 0.00 0.00 5.52
1339 1352 2.412870 CCCCAAATTTTCGCCTTGTTC 58.587 47.619 0.00 0.00 0.00 3.18
1381 1395 2.579787 CTGCACCGATCGTCCGTC 60.580 66.667 15.09 0.00 0.00 4.79
1387 1401 1.064296 CCGATCGTCCGTCTGAAGG 59.936 63.158 15.09 2.97 0.00 3.46
1439 1459 2.913463 AGAGCTCATGACTCTGGGG 58.087 57.895 17.77 0.28 42.88 4.96
1626 1646 2.808543 CCCAAAGTGAGTTGACTACTGC 59.191 50.000 0.00 0.00 37.17 4.40
1635 1655 0.391228 TTGACTACTGCCAACTGCGA 59.609 50.000 0.00 0.00 45.60 5.10
1720 1741 6.334202 GGTCAGGGTATCGAGATTGATATTC 58.666 44.000 0.00 0.00 33.65 1.75
1721 1742 6.153680 GGTCAGGGTATCGAGATTGATATTCT 59.846 42.308 0.00 0.00 33.65 2.40
1722 1743 7.254852 GTCAGGGTATCGAGATTGATATTCTC 58.745 42.308 0.00 0.00 36.97 2.87
1723 1744 7.122055 GTCAGGGTATCGAGATTGATATTCTCT 59.878 40.741 0.00 0.00 37.96 3.10
1724 1745 7.671819 TCAGGGTATCGAGATTGATATTCTCTT 59.328 37.037 0.00 0.00 37.96 2.85
1725 1746 8.310382 CAGGGTATCGAGATTGATATTCTCTTT 58.690 37.037 0.00 0.00 37.96 2.52
1726 1747 9.535170 AGGGTATCGAGATTGATATTCTCTTTA 57.465 33.333 0.00 0.00 37.96 1.85
1769 1795 9.840427 CTGTTCGTATTATCTTCAAAAATGGTT 57.160 29.630 0.00 0.00 0.00 3.67
1912 1938 1.803334 TCCATGTAACGTTCAGTGCC 58.197 50.000 2.82 0.00 0.00 5.01
1996 2022 5.596361 TGCCTGTTCTGAATTTCCAAAAGTA 59.404 36.000 0.00 0.00 0.00 2.24
2011 2040 9.709495 TTTCCAAAAGTATTCAAGGATTTCATG 57.291 29.630 0.00 0.00 0.00 3.07
2072 2104 8.115490 AGCAATACAAGCTTGAAATAACTCTT 57.885 30.769 32.50 8.71 39.87 2.85
2147 2179 5.759059 TCCATCACCTATGAATTTTCAGCT 58.241 37.500 0.00 0.00 41.08 4.24
2158 2190 6.109156 TGAATTTTCAGCTGGTAGTGTCTA 57.891 37.500 15.13 0.00 32.50 2.59
2198 2230 8.464770 TGTTTCATATGCTTTAACTGAAATGC 57.535 30.769 0.00 0.00 37.92 3.56
2220 2252 0.452987 AAGCAGCGTACCATGCAATG 59.547 50.000 16.71 0.00 45.01 2.82
2239 2277 6.206438 TGCAATGTTCAGTTTGTCTATGCTAA 59.794 34.615 0.00 0.00 0.00 3.09
2242 2280 9.462174 CAATGTTCAGTTTGTCTATGCTAAAAA 57.538 29.630 0.00 0.00 0.00 1.94
2444 2483 5.163744 TGCTCTATGTCGTAAGTTCTCTCAC 60.164 44.000 0.00 0.00 39.48 3.51
2482 2521 7.171508 ACGATGGTTATGAAGTAGCATAATGTG 59.828 37.037 0.00 0.00 41.31 3.21
2520 2559 9.267084 GAGTAAATTGCAAATTTAAGTTCCCAA 57.733 29.630 1.71 0.68 0.00 4.12
2597 2636 8.242325 TCCTTAATATCTACTCCCTTCATTCCT 58.758 37.037 0.00 0.00 0.00 3.36
2598 2637 8.885346 CCTTAATATCTACTCCCTTCATTCCTT 58.115 37.037 0.00 0.00 0.00 3.36
2602 2641 8.986929 ATATCTACTCCCTTCATTCCTTTTTG 57.013 34.615 0.00 0.00 0.00 2.44
2603 2642 6.200878 TCTACTCCCTTCATTCCTTTTTGT 57.799 37.500 0.00 0.00 0.00 2.83
2604 2643 7.324388 TCTACTCCCTTCATTCCTTTTTGTA 57.676 36.000 0.00 0.00 0.00 2.41
2605 2644 7.751646 TCTACTCCCTTCATTCCTTTTTGTAA 58.248 34.615 0.00 0.00 0.00 2.41
2607 2646 5.775195 ACTCCCTTCATTCCTTTTTGTAAGG 59.225 40.000 0.00 0.00 38.78 2.69
2608 2647 5.711698 TCCCTTCATTCCTTTTTGTAAGGT 58.288 37.500 3.68 0.00 38.55 3.50
2610 2649 5.304357 CCCTTCATTCCTTTTTGTAAGGTGT 59.696 40.000 3.68 0.00 38.55 4.16
2611 2650 6.492087 CCCTTCATTCCTTTTTGTAAGGTGTA 59.508 38.462 3.68 0.00 38.55 2.90
2612 2651 7.014808 CCCTTCATTCCTTTTTGTAAGGTGTAA 59.985 37.037 3.68 0.00 38.55 2.41
2632 2671 4.338815 TTTTTGGCACGGTGACCA 57.661 50.000 12.26 14.98 0.00 4.02
2633 2672 2.579878 TTTTTGGCACGGTGACCAA 58.420 47.368 23.78 23.78 44.11 3.67
2634 2673 0.457851 TTTTTGGCACGGTGACCAAG 59.542 50.000 25.13 0.00 46.20 3.61
2635 2674 1.388065 TTTTGGCACGGTGACCAAGG 61.388 55.000 25.13 0.00 46.20 3.61
2636 2675 4.947147 TGGCACGGTGACCAAGGC 62.947 66.667 12.26 6.15 31.46 4.35
2637 2676 4.947147 GGCACGGTGACCAAGGCA 62.947 66.667 13.29 0.00 0.00 4.75
2640 2679 1.600636 CACGGTGACCAAGGCACAT 60.601 57.895 0.74 0.00 37.99 3.21
2641 2680 0.321210 CACGGTGACCAAGGCACATA 60.321 55.000 0.74 0.00 37.99 2.29
2642 2681 0.398696 ACGGTGACCAAGGCACATAA 59.601 50.000 1.11 0.00 37.99 1.90
2643 2682 1.004277 ACGGTGACCAAGGCACATAAT 59.996 47.619 1.11 0.00 37.99 1.28
2644 2683 2.091541 CGGTGACCAAGGCACATAATT 58.908 47.619 1.11 0.00 37.99 1.40
2645 2684 2.491693 CGGTGACCAAGGCACATAATTT 59.508 45.455 1.11 0.00 37.99 1.82
2646 2685 3.056891 CGGTGACCAAGGCACATAATTTT 60.057 43.478 1.11 0.00 37.99 1.82
2647 2686 4.156922 CGGTGACCAAGGCACATAATTTTA 59.843 41.667 1.11 0.00 37.99 1.52
2648 2687 5.407502 GGTGACCAAGGCACATAATTTTAC 58.592 41.667 2.52 0.00 37.99 2.01
2650 2689 5.861787 GTGACCAAGGCACATAATTTTACAC 59.138 40.000 0.00 0.00 36.31 2.90
2651 2690 5.536538 TGACCAAGGCACATAATTTTACACA 59.463 36.000 0.00 0.00 0.00 3.72
2652 2691 6.040955 TGACCAAGGCACATAATTTTACACAA 59.959 34.615 0.00 0.00 0.00 3.33
2653 2692 6.454795 ACCAAGGCACATAATTTTACACAAG 58.545 36.000 0.00 0.00 0.00 3.16
2654 2693 6.041523 ACCAAGGCACATAATTTTACACAAGT 59.958 34.615 0.00 0.00 0.00 3.16
2655 2694 6.928492 CCAAGGCACATAATTTTACACAAGTT 59.072 34.615 0.00 0.00 0.00 2.66
2656 2695 7.440856 CCAAGGCACATAATTTTACACAAGTTT 59.559 33.333 0.00 0.00 0.00 2.66
2657 2696 7.945033 AGGCACATAATTTTACACAAGTTTG 57.055 32.000 0.00 0.00 0.00 2.93
2658 2697 6.928492 AGGCACATAATTTTACACAAGTTTGG 59.072 34.615 0.00 0.00 0.00 3.28
2659 2698 6.926272 GGCACATAATTTTACACAAGTTTGGA 59.074 34.615 0.00 0.00 0.00 3.53
2660 2699 7.095816 GGCACATAATTTTACACAAGTTTGGAC 60.096 37.037 0.00 0.00 0.00 4.02
2661 2700 7.436673 GCACATAATTTTACACAAGTTTGGACA 59.563 33.333 0.00 0.00 0.00 4.02
2662 2701 9.307121 CACATAATTTTACACAAGTTTGGACAA 57.693 29.630 0.00 0.00 0.00 3.18
2663 2702 9.877178 ACATAATTTTACACAAGTTTGGACAAA 57.123 25.926 0.00 0.00 0.00 2.83
2670 2709 8.705048 TTACACAAGTTTGGACAAAATTAACC 57.295 30.769 9.72 0.00 36.60 2.85
2671 2710 6.941857 ACACAAGTTTGGACAAAATTAACCT 58.058 32.000 9.72 0.00 36.60 3.50
2672 2711 7.390823 ACACAAGTTTGGACAAAATTAACCTT 58.609 30.769 9.72 1.30 36.60 3.50
2673 2712 7.333174 ACACAAGTTTGGACAAAATTAACCTTG 59.667 33.333 9.72 13.34 36.60 3.61
2674 2713 7.547370 CACAAGTTTGGACAAAATTAACCTTGA 59.453 33.333 20.64 0.00 36.60 3.02
2675 2714 7.547722 ACAAGTTTGGACAAAATTAACCTTGAC 59.452 33.333 20.64 0.36 36.60 3.18
2676 2715 7.418337 AGTTTGGACAAAATTAACCTTGACT 57.582 32.000 0.00 0.00 31.33 3.41
2677 2716 8.528044 AGTTTGGACAAAATTAACCTTGACTA 57.472 30.769 0.00 0.00 31.33 2.59
2678 2717 8.973182 AGTTTGGACAAAATTAACCTTGACTAA 58.027 29.630 0.00 1.91 31.33 2.24
2679 2718 9.589111 GTTTGGACAAAATTAACCTTGACTAAA 57.411 29.630 0.00 6.75 30.11 1.85
2681 2720 9.974980 TTGGACAAAATTAACCTTGACTAAATC 57.025 29.630 5.57 0.00 0.00 2.17
2682 2721 9.137459 TGGACAAAATTAACCTTGACTAAATCA 57.863 29.630 5.57 0.00 34.65 2.57
2693 2732 7.985476 ACCTTGACTAAATCATTGATTAACGG 58.015 34.615 12.15 8.58 37.11 4.44
2694 2733 6.912591 CCTTGACTAAATCATTGATTAACGGC 59.087 38.462 12.15 6.81 37.11 5.68
2695 2734 6.993786 TGACTAAATCATTGATTAACGGCA 57.006 33.333 12.15 9.06 31.46 5.69
2696 2735 7.384439 TGACTAAATCATTGATTAACGGCAA 57.616 32.000 12.15 0.00 31.46 4.52
2697 2736 7.471721 TGACTAAATCATTGATTAACGGCAAG 58.528 34.615 12.15 4.94 31.46 4.01
2698 2737 7.120579 TGACTAAATCATTGATTAACGGCAAGT 59.879 33.333 12.15 7.51 31.46 3.16
2699 2738 8.500753 ACTAAATCATTGATTAACGGCAAGTA 57.499 30.769 12.15 0.00 31.46 2.24
2700 2739 8.952278 ACTAAATCATTGATTAACGGCAAGTAA 58.048 29.630 12.15 0.00 31.46 2.24
2701 2740 9.781834 CTAAATCATTGATTAACGGCAAGTAAA 57.218 29.630 12.15 0.00 31.46 2.01
2703 2742 8.856490 AATCATTGATTAACGGCAAGTAAATC 57.144 30.769 10.16 0.00 29.72 2.17
2704 2743 7.384439 TCATTGATTAACGGCAAGTAAATCA 57.616 32.000 0.00 0.00 35.39 2.57
2705 2744 7.995289 TCATTGATTAACGGCAAGTAAATCAT 58.005 30.769 0.00 0.00 36.68 2.45
2706 2745 8.465999 TCATTGATTAACGGCAAGTAAATCATT 58.534 29.630 0.00 0.00 36.68 2.57
2707 2746 9.086336 CATTGATTAACGGCAAGTAAATCATTT 57.914 29.630 0.00 0.00 36.68 2.32
2709 2748 9.781834 TTGATTAACGGCAAGTAAATCATTTAG 57.218 29.630 0.00 0.00 36.68 1.85
2710 2749 8.402472 TGATTAACGGCAAGTAAATCATTTAGG 58.598 33.333 0.00 0.00 32.99 2.69
2711 2750 4.632538 ACGGCAAGTAAATCATTTAGGC 57.367 40.909 0.00 0.00 0.00 3.93
2712 2751 4.270008 ACGGCAAGTAAATCATTTAGGCT 58.730 39.130 0.00 0.00 0.00 4.58
2713 2752 4.705023 ACGGCAAGTAAATCATTTAGGCTT 59.295 37.500 0.00 0.00 0.00 4.35
2714 2753 5.036737 CGGCAAGTAAATCATTTAGGCTTG 58.963 41.667 12.90 12.90 34.71 4.01
2715 2754 5.351458 GGCAAGTAAATCATTTAGGCTTGG 58.649 41.667 16.57 5.06 33.38 3.61
2716 2755 5.127031 GGCAAGTAAATCATTTAGGCTTGGA 59.873 40.000 16.57 0.00 33.38 3.53
2717 2756 6.350949 GGCAAGTAAATCATTTAGGCTTGGAA 60.351 38.462 16.57 0.00 33.38 3.53
2718 2757 7.096551 GCAAGTAAATCATTTAGGCTTGGAAA 58.903 34.615 16.57 0.00 33.38 3.13
2720 2759 7.410120 AGTAAATCATTTAGGCTTGGAAAGG 57.590 36.000 0.00 0.00 46.35 3.11
2721 2760 7.182060 AGTAAATCATTTAGGCTTGGAAAGGA 58.818 34.615 0.00 0.00 46.35 3.36
2722 2761 6.933514 AAATCATTTAGGCTTGGAAAGGAA 57.066 33.333 0.00 0.00 46.35 3.36
2723 2762 6.933514 AATCATTTAGGCTTGGAAAGGAAA 57.066 33.333 0.00 0.00 46.35 3.13
2724 2763 6.933514 ATCATTTAGGCTTGGAAAGGAAAA 57.066 33.333 0.00 0.00 46.35 2.29
2725 2764 6.345096 TCATTTAGGCTTGGAAAGGAAAAG 57.655 37.500 0.00 0.00 46.35 2.27
2726 2765 6.074648 TCATTTAGGCTTGGAAAGGAAAAGA 58.925 36.000 0.00 0.00 46.35 2.52
2727 2766 6.725834 TCATTTAGGCTTGGAAAGGAAAAGAT 59.274 34.615 0.00 0.00 46.35 2.40
2728 2767 7.893302 TCATTTAGGCTTGGAAAGGAAAAGATA 59.107 33.333 0.00 0.00 46.35 1.98
2729 2768 7.462571 TTTAGGCTTGGAAAGGAAAAGATAC 57.537 36.000 0.00 0.00 46.35 2.24
2730 2769 4.998051 AGGCTTGGAAAGGAAAAGATACA 58.002 39.130 0.00 0.00 46.35 2.29
2731 2770 4.767409 AGGCTTGGAAAGGAAAAGATACAC 59.233 41.667 0.00 0.00 46.35 2.90
2732 2771 4.767409 GGCTTGGAAAGGAAAAGATACACT 59.233 41.667 0.00 0.00 46.35 3.55
2733 2772 5.106118 GGCTTGGAAAGGAAAAGATACACTC 60.106 44.000 0.00 0.00 46.35 3.51
2734 2773 5.473504 GCTTGGAAAGGAAAAGATACACTCA 59.526 40.000 0.00 0.00 46.35 3.41
2735 2774 6.016276 GCTTGGAAAGGAAAAGATACACTCAA 60.016 38.462 0.00 0.00 46.35 3.02
2736 2775 7.309438 GCTTGGAAAGGAAAAGATACACTCAAT 60.309 37.037 0.00 0.00 46.35 2.57
2737 2776 7.687941 TGGAAAGGAAAAGATACACTCAATC 57.312 36.000 0.00 0.00 0.00 2.67
2738 2777 6.371548 TGGAAAGGAAAAGATACACTCAATCG 59.628 38.462 0.00 0.00 0.00 3.34
2739 2778 6.183360 GGAAAGGAAAAGATACACTCAATCGG 60.183 42.308 0.00 0.00 0.00 4.18
2740 2779 4.770795 AGGAAAAGATACACTCAATCGGG 58.229 43.478 0.00 0.00 0.00 5.14
2741 2780 3.877508 GGAAAAGATACACTCAATCGGGG 59.122 47.826 0.00 0.00 0.00 5.73
2742 2781 3.560636 AAAGATACACTCAATCGGGGG 57.439 47.619 0.00 0.00 0.00 5.40
2743 2782 2.471815 AGATACACTCAATCGGGGGA 57.528 50.000 0.00 0.00 0.00 4.81
2744 2783 2.320781 AGATACACTCAATCGGGGGAG 58.679 52.381 0.00 0.00 37.18 4.30
2745 2784 2.091278 AGATACACTCAATCGGGGGAGA 60.091 50.000 0.00 0.00 35.17 3.71
2746 2785 1.776662 TACACTCAATCGGGGGAGAG 58.223 55.000 0.00 0.00 35.17 3.20
2747 2786 0.041238 ACACTCAATCGGGGGAGAGA 59.959 55.000 0.00 0.00 35.17 3.10
2748 2787 1.343478 ACACTCAATCGGGGGAGAGAT 60.343 52.381 0.00 0.00 35.17 2.75
2749 2788 2.091278 ACACTCAATCGGGGGAGAGATA 60.091 50.000 0.00 0.00 35.17 1.98
2750 2789 2.297597 CACTCAATCGGGGGAGAGATAC 59.702 54.545 0.00 0.00 35.17 2.24
2751 2790 2.178106 ACTCAATCGGGGGAGAGATACT 59.822 50.000 0.00 0.00 35.17 2.12
2752 2791 3.235200 CTCAATCGGGGGAGAGATACTT 58.765 50.000 0.00 0.00 32.87 2.24
2753 2792 3.643792 CTCAATCGGGGGAGAGATACTTT 59.356 47.826 0.00 0.00 32.87 2.66
2754 2793 3.641906 TCAATCGGGGGAGAGATACTTTC 59.358 47.826 0.00 0.00 0.00 2.62
2755 2794 2.083628 TCGGGGGAGAGATACTTTCC 57.916 55.000 0.00 0.00 34.45 3.13
2756 2795 1.574339 TCGGGGGAGAGATACTTTCCT 59.426 52.381 7.96 0.00 35.41 3.36
2757 2796 2.023307 TCGGGGGAGAGATACTTTCCTT 60.023 50.000 7.96 0.00 35.41 3.36
2758 2797 2.772515 CGGGGGAGAGATACTTTCCTTT 59.227 50.000 7.96 0.00 35.41 3.11
2759 2798 3.200165 CGGGGGAGAGATACTTTCCTTTT 59.800 47.826 7.96 0.00 35.41 2.27
2760 2799 4.683671 CGGGGGAGAGATACTTTCCTTTTC 60.684 50.000 7.96 0.00 35.41 2.29
2761 2800 4.475381 GGGGGAGAGATACTTTCCTTTTCT 59.525 45.833 7.96 0.00 35.41 2.52
2762 2801 5.044772 GGGGGAGAGATACTTTCCTTTTCTT 60.045 44.000 7.96 0.00 35.41 2.52
2763 2802 6.116806 GGGGAGAGATACTTTCCTTTTCTTC 58.883 44.000 7.96 0.00 35.41 2.87
2764 2803 6.069905 GGGGAGAGATACTTTCCTTTTCTTCT 60.070 42.308 7.96 0.00 35.41 2.85
2765 2804 7.045416 GGGAGAGATACTTTCCTTTTCTTCTC 58.955 42.308 7.96 0.00 35.41 2.87
2766 2805 7.093068 GGGAGAGATACTTTCCTTTTCTTCTCT 60.093 40.741 7.96 0.00 40.89 3.10
2767 2806 8.973182 GGAGAGATACTTTCCTTTTCTTCTCTA 58.027 37.037 0.00 0.00 38.93 2.43
2789 2828 9.235537 CTCTATAATGAGAGATACATGCAATCG 57.764 37.037 0.00 0.00 45.03 3.34
2790 2829 8.193438 TCTATAATGAGAGATACATGCAATCGG 58.807 37.037 0.00 0.00 0.00 4.18
2791 2830 4.879197 ATGAGAGATACATGCAATCGGA 57.121 40.909 0.00 0.00 0.00 4.55
2792 2831 4.248691 TGAGAGATACATGCAATCGGAG 57.751 45.455 0.00 0.00 0.00 4.63
2793 2832 3.006217 TGAGAGATACATGCAATCGGAGG 59.994 47.826 0.00 0.00 0.00 4.30
2794 2833 3.234353 AGAGATACATGCAATCGGAGGA 58.766 45.455 0.00 0.00 0.00 3.71
2795 2834 3.257873 AGAGATACATGCAATCGGAGGAG 59.742 47.826 0.00 0.00 0.00 3.69
2796 2835 3.234353 AGATACATGCAATCGGAGGAGA 58.766 45.455 0.00 0.00 0.00 3.71
2797 2836 3.257873 AGATACATGCAATCGGAGGAGAG 59.742 47.826 0.00 0.00 0.00 3.20
2798 2837 1.489481 ACATGCAATCGGAGGAGAGA 58.511 50.000 0.00 0.00 0.00 3.10
2799 2838 2.045524 ACATGCAATCGGAGGAGAGAT 58.954 47.619 0.00 0.00 0.00 2.75
2800 2839 2.036992 ACATGCAATCGGAGGAGAGATC 59.963 50.000 0.00 0.00 0.00 2.75
2801 2840 1.043816 TGCAATCGGAGGAGAGATCC 58.956 55.000 0.00 0.00 0.00 3.36
2802 2841 1.337118 GCAATCGGAGGAGAGATCCT 58.663 55.000 0.00 0.00 44.06 3.24
2803 2842 1.691434 GCAATCGGAGGAGAGATCCTT 59.309 52.381 0.00 0.00 40.86 3.36
2804 2843 2.103941 GCAATCGGAGGAGAGATCCTTT 59.896 50.000 0.00 0.00 40.86 3.11
2805 2844 3.801983 GCAATCGGAGGAGAGATCCTTTC 60.802 52.174 0.00 0.00 40.86 2.62
2806 2845 2.074729 TCGGAGGAGAGATCCTTTCC 57.925 55.000 0.00 0.00 40.86 3.13
2807 2846 1.571457 TCGGAGGAGAGATCCTTTCCT 59.429 52.381 9.38 9.38 45.97 3.36
2808 2847 2.023888 TCGGAGGAGAGATCCTTTCCTT 60.024 50.000 10.59 0.00 43.80 3.36
2809 2848 2.769095 CGGAGGAGAGATCCTTTCCTTT 59.231 50.000 10.59 0.00 43.80 3.11
2810 2849 3.198853 CGGAGGAGAGATCCTTTCCTTTT 59.801 47.826 10.59 0.00 43.80 2.27
2811 2850 4.323868 CGGAGGAGAGATCCTTTCCTTTTT 60.324 45.833 10.59 0.00 43.80 1.94
2829 2868 2.194201 TTTTGGAGGGCTAAAGACGG 57.806 50.000 0.00 0.00 0.00 4.79
2830 2869 1.354101 TTTGGAGGGCTAAAGACGGA 58.646 50.000 0.00 0.00 0.00 4.69
2831 2870 1.354101 TTGGAGGGCTAAAGACGGAA 58.646 50.000 0.00 0.00 0.00 4.30
2832 2871 1.580059 TGGAGGGCTAAAGACGGAAT 58.420 50.000 0.00 0.00 0.00 3.01
2833 2872 1.913419 TGGAGGGCTAAAGACGGAATT 59.087 47.619 0.00 0.00 0.00 2.17
2834 2873 3.109151 TGGAGGGCTAAAGACGGAATTA 58.891 45.455 0.00 0.00 0.00 1.40
2835 2874 3.118519 TGGAGGGCTAAAGACGGAATTAC 60.119 47.826 0.00 0.00 0.00 1.89
2836 2875 3.121544 GAGGGCTAAAGACGGAATTACG 58.878 50.000 8.96 8.96 40.31 3.18
2837 2876 2.762327 AGGGCTAAAGACGGAATTACGA 59.238 45.455 18.96 0.00 37.61 3.43
2838 2877 3.121544 GGGCTAAAGACGGAATTACGAG 58.878 50.000 18.96 4.03 37.61 4.18
2839 2878 3.121544 GGCTAAAGACGGAATTACGAGG 58.878 50.000 18.96 1.12 37.61 4.63
2840 2879 3.181483 GGCTAAAGACGGAATTACGAGGA 60.181 47.826 18.96 0.00 37.61 3.71
2841 2880 4.427312 GCTAAAGACGGAATTACGAGGAA 58.573 43.478 18.96 0.00 37.61 3.36
2842 2881 5.048507 GCTAAAGACGGAATTACGAGGAAT 58.951 41.667 18.96 0.00 37.61 3.01
2843 2882 5.522824 GCTAAAGACGGAATTACGAGGAATT 59.477 40.000 18.96 6.80 37.61 2.17
2844 2883 6.698766 GCTAAAGACGGAATTACGAGGAATTA 59.301 38.462 18.96 7.56 37.61 1.40
2845 2884 7.223387 GCTAAAGACGGAATTACGAGGAATTAA 59.777 37.037 18.96 0.00 37.61 1.40
2846 2885 7.910441 AAAGACGGAATTACGAGGAATTAAA 57.090 32.000 18.96 0.00 37.61 1.52
2847 2886 7.910441 AAGACGGAATTACGAGGAATTAAAA 57.090 32.000 18.96 0.00 37.61 1.52
2848 2887 7.535489 AGACGGAATTACGAGGAATTAAAAG 57.465 36.000 18.96 0.00 37.61 2.27
2849 2888 7.325694 AGACGGAATTACGAGGAATTAAAAGA 58.674 34.615 18.96 0.00 37.61 2.52
2850 2889 7.820872 AGACGGAATTACGAGGAATTAAAAGAA 59.179 33.333 18.96 0.00 37.61 2.52
2851 2890 8.326680 ACGGAATTACGAGGAATTAAAAGAAA 57.673 30.769 18.96 0.00 37.61 2.52
2852 2891 8.953313 ACGGAATTACGAGGAATTAAAAGAAAT 58.047 29.630 18.96 0.00 37.61 2.17
2853 2892 9.221775 CGGAATTACGAGGAATTAAAAGAAATG 57.778 33.333 3.22 0.00 35.47 2.32
2854 2893 9.020813 GGAATTACGAGGAATTAAAAGAAATGC 57.979 33.333 0.00 0.00 0.00 3.56
2855 2894 9.567848 GAATTACGAGGAATTAAAAGAAATGCA 57.432 29.630 0.00 0.00 0.00 3.96
2856 2895 8.911247 ATTACGAGGAATTAAAAGAAATGCAC 57.089 30.769 0.00 0.00 0.00 4.57
2857 2896 5.709966 ACGAGGAATTAAAAGAAATGCACC 58.290 37.500 0.00 0.00 0.00 5.01
2858 2897 5.476945 ACGAGGAATTAAAAGAAATGCACCT 59.523 36.000 0.00 0.00 0.00 4.00
2859 2898 6.015434 ACGAGGAATTAAAAGAAATGCACCTT 60.015 34.615 0.00 0.00 0.00 3.50
2860 2899 7.175990 ACGAGGAATTAAAAGAAATGCACCTTA 59.824 33.333 0.00 0.00 0.00 2.69
2861 2900 7.484959 CGAGGAATTAAAAGAAATGCACCTTAC 59.515 37.037 0.00 0.00 0.00 2.34
2862 2901 8.189119 AGGAATTAAAAGAAATGCACCTTACA 57.811 30.769 0.00 0.00 0.00 2.41
2863 2902 8.815912 AGGAATTAAAAGAAATGCACCTTACAT 58.184 29.630 0.00 0.00 0.00 2.29
2864 2903 8.872845 GGAATTAAAAGAAATGCACCTTACATG 58.127 33.333 0.00 0.00 0.00 3.21
2865 2904 8.776376 AATTAAAAGAAATGCACCTTACATGG 57.224 30.769 0.00 0.00 0.00 3.66
2866 2905 5.806654 AAAAGAAATGCACCTTACATGGT 57.193 34.783 0.00 0.00 41.77 3.55
2883 2922 5.506708 ACATGGTGGAATTTTAGGGAGTAC 58.493 41.667 0.00 0.00 0.00 2.73
3065 3105 0.178831 AGGGGGACTCCAGTTCCAAT 60.179 55.000 6.37 0.00 45.84 3.16
3099 3139 4.286032 TCATTGGTTAGCTATTCCCGCTAT 59.714 41.667 11.39 0.00 39.50 2.97
3465 3509 3.689649 CCAGGGACTAGGTTCAATTTTCG 59.310 47.826 0.00 0.00 36.02 3.46
3537 3581 4.996788 TTAGGTAAGGAAGCCTACGAAG 57.003 45.455 0.00 0.00 37.11 3.79
3591 3637 7.140705 TGACTCATTTGTCACATCATTGTTTC 58.859 34.615 0.00 0.00 41.43 2.78
3729 3781 2.244510 ACACAGGGATATTTGGGATGCA 59.755 45.455 0.00 0.00 0.00 3.96
3882 3937 7.902920 ATATTCATGTTGCCAAGTTCCTAAT 57.097 32.000 0.00 0.00 0.00 1.73
3896 3951 7.255035 CCAAGTTCCTAATCATGCTTCTGTATG 60.255 40.741 0.00 0.00 37.58 2.39
4083 4138 6.418057 TTTTGCATTATTCCAGGTCAGTTT 57.582 33.333 0.00 0.00 0.00 2.66
4167 4244 8.019656 CATTAGTACTGTAGTAATGGTTCCCT 57.980 38.462 30.47 9.84 43.47 4.20
4168 4245 5.934402 AGTACTGTAGTAATGGTTCCCTG 57.066 43.478 0.00 0.00 31.52 4.45
4169 4246 3.629142 ACTGTAGTAATGGTTCCCTGC 57.371 47.619 0.00 0.00 0.00 4.85
4170 4247 2.910319 ACTGTAGTAATGGTTCCCTGCA 59.090 45.455 0.00 0.00 0.00 4.41
4171 4248 3.055094 ACTGTAGTAATGGTTCCCTGCAG 60.055 47.826 6.78 6.78 41.56 4.41
4172 4249 3.178046 TGTAGTAATGGTTCCCTGCAGA 58.822 45.455 17.39 0.00 0.00 4.26
4174 4251 4.227300 TGTAGTAATGGTTCCCTGCAGAAT 59.773 41.667 17.39 0.00 0.00 2.40
4198 4306 8.920509 ATTGTTTCTTGTTAACTGTGGTAAAC 57.079 30.769 7.22 9.11 0.00 2.01
4216 4324 7.225931 GTGGTAAACTGAACTTGAACTCACATA 59.774 37.037 0.00 0.00 0.00 2.29
4227 4335 1.204146 ACTCACATAGTTGCCGGGAT 58.796 50.000 2.18 0.00 33.35 3.85
4313 4433 2.516906 TCTGCATGCACTTTGGAATCA 58.483 42.857 18.46 0.00 0.00 2.57
4665 4786 2.665519 CGTCCAATTTGTGTGCAGCTAC 60.666 50.000 0.00 0.00 0.00 3.58
4778 4914 5.344933 TGACACTAACTTCGATCATCAAACG 59.655 40.000 0.00 0.00 0.00 3.60
4781 4917 4.863131 ACTAACTTCGATCATCAAACGGTC 59.137 41.667 0.00 0.00 0.00 4.79
4788 4924 3.181507 CGATCATCAAACGGTCAAAGCAT 60.182 43.478 0.00 0.00 0.00 3.79
4793 4929 5.918011 TCATCAAACGGTCAAAGCATTTTAC 59.082 36.000 0.00 0.00 35.03 2.01
4985 5126 4.953868 CGCCAACCACGGACACGA 62.954 66.667 0.00 0.00 44.60 4.35
5288 5429 2.028420 TGCGATGGAGAAATGACCAG 57.972 50.000 0.00 0.00 39.62 4.00
5326 5467 8.771766 TCGTGCTTAGTATACTAATCAGTACTG 58.228 37.037 23.13 17.17 40.06 2.74
5357 5498 3.574396 TGTTAGATTAGAGGATCGGCAGG 59.426 47.826 0.00 0.00 42.67 4.85
5410 5551 7.336975 GTGCATGTTTTCATTGTTTTGACTAC 58.663 34.615 0.00 0.00 38.64 2.73
5454 5595 0.037326 GGGTGCATGAGAAGTCACGA 60.037 55.000 0.00 0.00 34.75 4.35
5489 5630 6.321945 TGGAGTTTTAGGGGAAACAGTTTAAC 59.678 38.462 0.00 0.00 40.98 2.01
5491 5632 7.720957 GGAGTTTTAGGGGAAACAGTTTAACTA 59.279 37.037 0.00 0.00 40.98 2.24
5494 5635 8.347771 GTTTTAGGGGAAACAGTTTAACTACAG 58.652 37.037 0.00 0.00 38.92 2.74
5495 5636 5.899631 AGGGGAAACAGTTTAACTACAGA 57.100 39.130 0.00 0.00 0.00 3.41
5496 5637 6.256643 AGGGGAAACAGTTTAACTACAGAA 57.743 37.500 0.00 0.00 0.00 3.02
5507 5649 9.088512 CAGTTTAACTACAGAAGCGAATAGAAT 57.911 33.333 0.00 0.00 0.00 2.40
5515 5662 5.111989 CAGAAGCGAATAGAATCCTTGTGA 58.888 41.667 0.00 0.00 30.92 3.58
5545 5712 8.877864 TTCCTAAGGTTAATGATGAATTGTGT 57.122 30.769 0.00 0.00 0.00 3.72
5552 5719 7.884877 AGGTTAATGATGAATTGTGTTGAGAGA 59.115 33.333 0.00 0.00 0.00 3.10
5572 5739 1.933115 GCCGTGATGTTTCGCCCAAT 61.933 55.000 0.00 0.00 0.00 3.16
5589 5756 1.531149 CAATCACCCTCACAACGTGTC 59.469 52.381 0.00 0.00 34.79 3.67
5654 5832 2.957491 GAGCATCTCTAGCACACACT 57.043 50.000 0.00 0.00 0.00 3.55
5669 5847 2.035066 ACACACTATATAACGCCGACCC 59.965 50.000 0.00 0.00 0.00 4.46
5671 5849 1.267806 CACTATATAACGCCGACCCGT 59.732 52.381 0.00 0.00 44.41 5.28
5678 5856 2.734346 CGCCGACCCGTAAAACGT 60.734 61.111 0.00 0.00 40.58 3.99
5692 5870 3.743567 AAAACGTGTTTACAGTTCGCA 57.256 38.095 0.00 0.00 31.63 5.10
5743 5921 2.281484 GCAAAGTCAGACCCCGCA 60.281 61.111 0.00 0.00 0.00 5.69
5898 7625 1.609794 GGAGGGAGTGGACGAAGGT 60.610 63.158 0.00 0.00 0.00 3.50
5947 7674 1.153127 TTCACGCCCGAAACCTTGT 60.153 52.632 0.00 0.00 0.00 3.16
6061 7788 3.276091 CGACAACGTTGCCCTGCA 61.276 61.111 27.61 0.00 36.47 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.807573 GAAGAGGAAGCACGCGAGG 60.808 63.158 15.93 5.48 0.00 4.63
8 9 0.389166 AAGAAGAGGAAGCACGCGAG 60.389 55.000 15.93 5.97 0.00 5.03
13 14 6.314152 GGATTACTGTAAAGAAGAGGAAGCAC 59.686 42.308 4.11 0.00 29.27 4.40
15 16 6.314152 GTGGATTACTGTAAAGAAGAGGAAGC 59.686 42.308 4.11 0.00 26.84 3.86
19 20 5.805994 GTCGTGGATTACTGTAAAGAAGAGG 59.194 44.000 4.11 0.00 0.00 3.69
22 23 5.805994 GGAGTCGTGGATTACTGTAAAGAAG 59.194 44.000 4.11 0.00 0.00 2.85
28 29 2.019249 CCGGAGTCGTGGATTACTGTA 58.981 52.381 0.00 0.00 33.95 2.74
43 44 5.502544 GCTTTTCGATTTGATTAGACCGGAG 60.503 44.000 9.46 0.00 0.00 4.63
49 50 7.821595 TCTTACGCTTTTCGATTTGATTAGA 57.178 32.000 0.00 0.00 41.67 2.10
57 58 4.178540 TCCGAATCTTACGCTTTTCGATT 58.821 39.130 5.56 0.00 42.55 3.34
58 59 3.777478 TCCGAATCTTACGCTTTTCGAT 58.223 40.909 5.56 0.00 42.55 3.59
76 77 3.130693 CCTTACCTAAGGTGAGTCTTCCG 59.869 52.174 3.02 0.00 46.11 4.30
89 90 3.187112 CTTGGAAGGGTCCCTTACCTAA 58.813 50.000 27.69 16.26 43.58 2.69
109 110 2.347322 GGAGTCAGCGCTCAGACCT 61.347 63.158 20.69 10.67 37.24 3.85
120 121 3.827898 GGAGGACGGCGGAGTCAG 61.828 72.222 13.24 0.00 42.62 3.51
123 124 4.816984 ATCGGAGGACGGCGGAGT 62.817 66.667 13.24 0.00 44.45 3.85
125 126 4.807631 TCATCGGAGGACGGCGGA 62.808 66.667 13.24 0.00 44.45 5.54
128 129 1.079405 TTGTTCATCGGAGGACGGC 60.079 57.895 0.00 0.00 44.45 5.68
133 134 0.739813 GACGGGTTGTTCATCGGAGG 60.740 60.000 0.00 0.00 0.00 4.30
145 146 1.035932 ACGAGATGATCCGACGGGTT 61.036 55.000 15.25 1.44 33.83 4.11
148 149 0.317938 GGAACGAGATGATCCGACGG 60.318 60.000 7.84 7.84 28.92 4.79
167 168 4.116328 TCTTCACGCGGGCGAGAG 62.116 66.667 20.98 13.20 39.81 3.20
172 173 4.814294 ATCGGTCTTCACGCGGGC 62.814 66.667 12.47 0.00 0.00 6.13
211 212 3.114693 ACGACGTTTGATCGAGTACTC 57.885 47.619 13.18 13.18 42.25 2.59
213 214 2.222223 GCAACGACGTTTGATCGAGTAC 60.222 50.000 11.24 0.00 42.25 2.73
214 215 1.980844 GCAACGACGTTTGATCGAGTA 59.019 47.619 11.24 0.00 42.25 2.59
217 218 1.980844 GTAGCAACGACGTTTGATCGA 59.019 47.619 11.24 0.00 42.25 3.59
219 220 3.427528 TGAAGTAGCAACGACGTTTGATC 59.572 43.478 11.24 4.87 0.00 2.92
223 224 2.735134 GGATGAAGTAGCAACGACGTTT 59.265 45.455 11.24 0.00 0.00 3.60
225 226 1.544691 AGGATGAAGTAGCAACGACGT 59.455 47.619 0.00 0.00 0.00 4.34
226 227 2.186076 GAGGATGAAGTAGCAACGACG 58.814 52.381 0.00 0.00 0.00 5.12
235 236 6.832384 ACTCAGGTTATAACGAGGATGAAGTA 59.168 38.462 18.82 0.00 0.00 2.24
268 269 5.556915 ACACCTTCGGATCTTATTTGTGAA 58.443 37.500 0.00 0.00 0.00 3.18
318 319 3.426117 GACGACGATGGGGATGCGT 62.426 63.158 0.00 0.00 41.45 5.24
320 321 2.280186 GGACGACGATGGGGATGC 60.280 66.667 0.00 0.00 0.00 3.91
332 333 4.063230 CGACGACGACACGGACGA 62.063 66.667 0.00 0.00 42.66 4.20
339 340 1.133253 GATTCCGACGACGACGACA 59.867 57.895 20.63 7.22 42.66 4.35
340 341 1.926886 CGATTCCGACGACGACGAC 60.927 63.158 20.63 7.02 42.66 4.34
342 343 2.646862 CCGATTCCGACGACGACG 60.647 66.667 12.66 12.66 42.66 5.12
346 347 1.657794 GCTAGCCGATTCCGACGAC 60.658 63.158 2.29 0.00 38.22 4.34
368 369 4.992294 CGTTGGCGGGCGGTTTTG 62.992 66.667 0.00 0.00 0.00 2.44
443 447 4.430765 GACGAGGCGGGCGAAAGA 62.431 66.667 4.61 0.00 0.00 2.52
455 459 2.415010 CTGGATGAGGGCGACGAG 59.585 66.667 0.00 0.00 0.00 4.18
456 460 3.147595 CCTGGATGAGGGCGACGA 61.148 66.667 0.00 0.00 38.36 4.20
457 461 2.721167 TTCCTGGATGAGGGCGACG 61.721 63.158 0.00 0.00 43.06 5.12
464 468 4.026356 ACCAAAAGAGTTCCTGGATGAG 57.974 45.455 0.00 0.00 32.97 2.90
467 471 4.175962 TCCTACCAAAAGAGTTCCTGGAT 58.824 43.478 0.00 0.00 32.97 3.41
468 472 3.593942 TCCTACCAAAAGAGTTCCTGGA 58.406 45.455 0.00 0.00 32.97 3.86
470 474 5.165961 TCATCCTACCAAAAGAGTTCCTG 57.834 43.478 0.00 0.00 0.00 3.86
471 475 5.548056 TCTTCATCCTACCAAAAGAGTTCCT 59.452 40.000 0.00 0.00 0.00 3.36
473 477 7.745620 TTTCTTCATCCTACCAAAAGAGTTC 57.254 36.000 0.00 0.00 0.00 3.01
475 479 7.394641 GGAATTTCTTCATCCTACCAAAAGAGT 59.605 37.037 0.00 0.00 32.70 3.24
476 480 7.613411 AGGAATTTCTTCATCCTACCAAAAGAG 59.387 37.037 0.00 0.00 41.74 2.85
480 484 9.594936 TTTAAGGAATTTCTTCATCCTACCAAA 57.405 29.630 1.07 0.00 42.72 3.28
481 485 9.594936 TTTTAAGGAATTTCTTCATCCTACCAA 57.405 29.630 1.07 0.00 42.72 3.67
482 486 9.594936 TTTTTAAGGAATTTCTTCATCCTACCA 57.405 29.630 1.07 0.00 42.72 3.25
501 505 6.918067 AGTGAAATTCTCCCCCTTTTTAAG 57.082 37.500 0.00 0.00 0.00 1.85
502 506 6.269077 GGAAGTGAAATTCTCCCCCTTTTTAA 59.731 38.462 0.00 0.00 0.00 1.52
503 507 5.778241 GGAAGTGAAATTCTCCCCCTTTTTA 59.222 40.000 0.00 0.00 0.00 1.52
505 509 4.160329 GGAAGTGAAATTCTCCCCCTTTT 58.840 43.478 0.00 0.00 0.00 2.27
506 510 3.502303 GGGAAGTGAAATTCTCCCCCTTT 60.502 47.826 7.38 0.00 0.00 3.11
508 512 1.641192 GGGAAGTGAAATTCTCCCCCT 59.359 52.381 7.38 0.00 0.00 4.79
509 513 2.145397 GGGAAGTGAAATTCTCCCCC 57.855 55.000 7.38 7.26 0.00 5.40
510 514 1.682087 CGGGGAAGTGAAATTCTCCCC 60.682 57.143 21.69 21.69 45.66 4.81
547 551 1.039856 AAAATGGCCGTATGCATCCC 58.960 50.000 0.19 0.18 43.89 3.85
558 562 6.354130 TCTTGGTACTCATACTAAAATGGCC 58.646 40.000 0.00 0.00 32.02 5.36
638 642 1.838112 AATGTGATGTGTGGCGGAAT 58.162 45.000 0.00 0.00 0.00 3.01
643 647 2.756760 AGGATCAAATGTGATGTGTGGC 59.243 45.455 2.15 0.00 44.83 5.01
673 677 4.702131 GGTGATGCATAGGTGTTTTTCTCT 59.298 41.667 0.00 0.00 0.00 3.10
675 679 4.460382 CAGGTGATGCATAGGTGTTTTTCT 59.540 41.667 0.00 0.00 0.00 2.52
683 687 3.939740 ATTGACAGGTGATGCATAGGT 57.060 42.857 0.00 0.00 0.00 3.08
687 691 4.164796 TCCTAGAATTGACAGGTGATGCAT 59.835 41.667 0.00 0.00 0.00 3.96
770 774 1.376037 CGACCTGGGTCAGAAAGCC 60.376 63.158 18.33 0.00 44.77 4.35
782 786 2.350498 ACAAAGTTCAAACGACGACCTG 59.650 45.455 0.00 0.00 0.00 4.00
852 860 4.201871 GCCGCTGCTCTGATATAGTAGTAG 60.202 50.000 0.00 0.00 33.53 2.57
853 861 3.690139 GCCGCTGCTCTGATATAGTAGTA 59.310 47.826 0.00 0.00 33.53 1.82
854 862 2.490115 GCCGCTGCTCTGATATAGTAGT 59.510 50.000 0.00 0.00 33.53 2.73
855 863 2.159310 GGCCGCTGCTCTGATATAGTAG 60.159 54.545 0.00 0.00 37.74 2.57
856 864 1.819288 GGCCGCTGCTCTGATATAGTA 59.181 52.381 0.00 0.00 37.74 1.82
857 865 0.605589 GGCCGCTGCTCTGATATAGT 59.394 55.000 0.00 0.00 37.74 2.12
858 866 0.457509 CGGCCGCTGCTCTGATATAG 60.458 60.000 14.67 0.00 37.74 1.31
859 867 1.586541 CGGCCGCTGCTCTGATATA 59.413 57.895 14.67 0.00 37.74 0.86
860 868 2.341543 CGGCCGCTGCTCTGATAT 59.658 61.111 14.67 0.00 37.74 1.63
1107 1120 1.997874 GAGGTGGTGGAGGATGCCT 60.998 63.158 0.00 0.00 36.03 4.75
1139 1152 4.448976 GAGGGAAGGGGGCTTGGC 62.449 72.222 0.00 0.00 0.00 4.52
1172 1185 1.217882 GGATGTATTGAGCGGGTTCG 58.782 55.000 0.00 0.00 39.81 3.95
1181 1194 2.556766 TGGTGAGTGGGGATGTATTGA 58.443 47.619 0.00 0.00 0.00 2.57
1317 1330 0.684535 CAAGGCGAAAATTTGGGGGT 59.315 50.000 0.00 0.00 0.00 4.95
1322 1335 3.385193 AGGGAACAAGGCGAAAATTTG 57.615 42.857 0.00 0.00 0.00 2.32
1381 1395 1.758862 GCCCATCAAATTCCCCTTCAG 59.241 52.381 0.00 0.00 0.00 3.02
1387 1401 1.181786 TCAACGCCCATCAAATTCCC 58.818 50.000 0.00 0.00 0.00 3.97
1626 1646 2.552315 ACAATGTAAACCTCGCAGTTGG 59.448 45.455 0.00 0.00 0.00 3.77
1635 1655 5.009610 CCTTGCTACAACACAATGTAAACCT 59.990 40.000 0.00 0.00 35.48 3.50
1673 1693 4.386761 CCCCAATCACTGGTATCCAAATCT 60.387 45.833 0.00 0.00 44.76 2.40
1674 1694 3.891366 CCCCAATCACTGGTATCCAAATC 59.109 47.826 0.00 0.00 44.76 2.17
1675 1695 3.374098 CCCCCAATCACTGGTATCCAAAT 60.374 47.826 0.00 0.00 44.76 2.32
1912 1938 2.026641 CTGCCCAGGGACATTGTAATG 58.973 52.381 10.89 3.17 42.10 1.90
1996 2022 6.422100 CGTCTCGATACATGAAATCCTTGAAT 59.578 38.462 0.00 0.00 0.00 2.57
2011 2040 2.142319 GTACTCCCTCCGTCTCGATAC 58.858 57.143 0.00 0.00 0.00 2.24
2198 2230 1.081556 TGCATGGTACGCTGCTTACG 61.082 55.000 16.35 0.00 39.79 3.18
2211 2243 4.247267 AGACAAACTGAACATTGCATGG 57.753 40.909 0.00 0.00 33.60 3.66
2444 2483 2.202932 CATCGTTGGGAGGAGCCG 60.203 66.667 0.00 0.00 37.63 5.52
2482 2521 7.851822 TTGCAATTTACTCTGAAAATTCGAC 57.148 32.000 0.00 0.00 35.00 4.20
2520 2559 8.958119 TCAAAGCTTCAGGTCGTATATTAATT 57.042 30.769 0.00 0.00 0.00 1.40
2617 2656 1.826054 CCTTGGTCACCGTGCCAAA 60.826 57.895 20.67 0.00 43.29 3.28
2618 2657 2.203280 CCTTGGTCACCGTGCCAA 60.203 61.111 19.72 19.72 41.90 4.52
2620 2659 4.947147 TGCCTTGGTCACCGTGCC 62.947 66.667 0.00 0.00 0.00 5.01
2621 2660 3.660111 GTGCCTTGGTCACCGTGC 61.660 66.667 0.00 0.00 0.00 5.34
2622 2661 0.321210 TATGTGCCTTGGTCACCGTG 60.321 55.000 10.19 0.00 33.71 4.94
2624 2663 1.750193 ATTATGTGCCTTGGTCACCG 58.250 50.000 10.19 0.00 33.71 4.94
2626 2665 5.861787 GTGTAAAATTATGTGCCTTGGTCAC 59.138 40.000 7.09 7.09 35.14 3.67
2628 2667 6.019779 TGTGTAAAATTATGTGCCTTGGTC 57.980 37.500 0.00 0.00 0.00 4.02
2629 2668 6.041523 ACTTGTGTAAAATTATGTGCCTTGGT 59.958 34.615 0.00 0.00 0.00 3.67
2630 2669 6.454795 ACTTGTGTAAAATTATGTGCCTTGG 58.545 36.000 0.00 0.00 0.00 3.61
2631 2670 7.945033 AACTTGTGTAAAATTATGTGCCTTG 57.055 32.000 0.00 0.00 0.00 3.61
2632 2671 7.440856 CCAAACTTGTGTAAAATTATGTGCCTT 59.559 33.333 0.00 0.00 0.00 4.35
2633 2672 6.928492 CCAAACTTGTGTAAAATTATGTGCCT 59.072 34.615 0.00 0.00 0.00 4.75
2634 2673 6.926272 TCCAAACTTGTGTAAAATTATGTGCC 59.074 34.615 0.00 0.00 0.00 5.01
2635 2674 7.436673 TGTCCAAACTTGTGTAAAATTATGTGC 59.563 33.333 0.00 0.00 0.00 4.57
2636 2675 8.864069 TGTCCAAACTTGTGTAAAATTATGTG 57.136 30.769 0.00 0.00 0.00 3.21
2637 2676 9.877178 TTTGTCCAAACTTGTGTAAAATTATGT 57.123 25.926 0.00 0.00 0.00 2.29
2644 2683 9.152595 GGTTAATTTTGTCCAAACTTGTGTAAA 57.847 29.630 5.83 0.00 0.00 2.01
2645 2684 8.532819 AGGTTAATTTTGTCCAAACTTGTGTAA 58.467 29.630 5.83 0.00 0.00 2.41
2646 2685 8.068892 AGGTTAATTTTGTCCAAACTTGTGTA 57.931 30.769 5.83 0.00 0.00 2.90
2647 2686 6.941857 AGGTTAATTTTGTCCAAACTTGTGT 58.058 32.000 5.83 0.00 0.00 3.72
2648 2687 7.547370 TCAAGGTTAATTTTGTCCAAACTTGTG 59.453 33.333 11.87 0.00 32.97 3.33
2650 2689 7.763985 AGTCAAGGTTAATTTTGTCCAAACTTG 59.236 33.333 7.55 7.55 32.70 3.16
2651 2690 7.847096 AGTCAAGGTTAATTTTGTCCAAACTT 58.153 30.769 0.00 0.00 0.00 2.66
2652 2691 7.418337 AGTCAAGGTTAATTTTGTCCAAACT 57.582 32.000 0.00 0.00 0.00 2.66
2653 2692 9.589111 TTTAGTCAAGGTTAATTTTGTCCAAAC 57.411 29.630 0.00 0.00 0.00 2.93
2655 2694 9.974980 GATTTAGTCAAGGTTAATTTTGTCCAA 57.025 29.630 0.00 0.00 0.00 3.53
2656 2695 9.137459 TGATTTAGTCAAGGTTAATTTTGTCCA 57.863 29.630 0.00 0.00 32.78 4.02
2667 2706 8.458843 CCGTTAATCAATGATTTAGTCAAGGTT 58.541 33.333 14.15 0.00 40.97 3.50
2668 2707 7.415206 GCCGTTAATCAATGATTTAGTCAAGGT 60.415 37.037 14.15 0.00 40.97 3.50
2669 2708 6.912591 GCCGTTAATCAATGATTTAGTCAAGG 59.087 38.462 14.15 7.33 40.97 3.61
2670 2709 7.471721 TGCCGTTAATCAATGATTTAGTCAAG 58.528 34.615 14.15 0.00 40.97 3.02
2671 2710 7.384439 TGCCGTTAATCAATGATTTAGTCAA 57.616 32.000 14.15 0.00 40.97 3.18
2672 2711 6.993786 TGCCGTTAATCAATGATTTAGTCA 57.006 33.333 14.15 4.11 42.06 3.41
2673 2712 7.472543 ACTTGCCGTTAATCAATGATTTAGTC 58.527 34.615 14.15 2.36 33.95 2.59
2674 2713 7.391148 ACTTGCCGTTAATCAATGATTTAGT 57.609 32.000 14.15 4.44 33.95 2.24
2675 2714 9.781834 TTTACTTGCCGTTAATCAATGATTTAG 57.218 29.630 14.15 6.01 33.95 1.85
2677 2716 9.301153 GATTTACTTGCCGTTAATCAATGATTT 57.699 29.630 14.15 0.00 39.95 2.17
2678 2717 8.465999 TGATTTACTTGCCGTTAATCAATGATT 58.534 29.630 13.43 13.43 44.23 2.57
2679 2718 7.995289 TGATTTACTTGCCGTTAATCAATGAT 58.005 30.769 12.40 0.00 44.23 2.45
2680 2719 7.384439 TGATTTACTTGCCGTTAATCAATGA 57.616 32.000 12.40 0.00 44.23 2.57
2685 2724 7.378728 GCCTAAATGATTTACTTGCCGTTAATC 59.621 37.037 0.00 7.59 40.37 1.75
2686 2725 7.068226 AGCCTAAATGATTTACTTGCCGTTAAT 59.932 33.333 0.00 0.00 0.00 1.40
2687 2726 6.376018 AGCCTAAATGATTTACTTGCCGTTAA 59.624 34.615 0.00 0.00 0.00 2.01
2688 2727 5.883673 AGCCTAAATGATTTACTTGCCGTTA 59.116 36.000 0.00 0.00 0.00 3.18
2689 2728 4.705023 AGCCTAAATGATTTACTTGCCGTT 59.295 37.500 0.00 0.00 0.00 4.44
2690 2729 4.270008 AGCCTAAATGATTTACTTGCCGT 58.730 39.130 0.00 0.00 0.00 5.68
2691 2730 4.900635 AGCCTAAATGATTTACTTGCCG 57.099 40.909 0.00 0.00 0.00 5.69
2692 2731 5.127031 TCCAAGCCTAAATGATTTACTTGCC 59.873 40.000 16.64 0.00 32.33 4.52
2693 2732 6.207691 TCCAAGCCTAAATGATTTACTTGC 57.792 37.500 16.64 10.20 32.33 4.01
2694 2733 7.761249 CCTTTCCAAGCCTAAATGATTTACTTG 59.239 37.037 15.74 15.74 32.94 3.16
2695 2734 7.673926 TCCTTTCCAAGCCTAAATGATTTACTT 59.326 33.333 0.00 0.00 0.00 2.24
2696 2735 7.182060 TCCTTTCCAAGCCTAAATGATTTACT 58.818 34.615 0.00 0.00 0.00 2.24
2697 2736 7.404671 TCCTTTCCAAGCCTAAATGATTTAC 57.595 36.000 0.00 0.00 0.00 2.01
2698 2737 8.429237 TTTCCTTTCCAAGCCTAAATGATTTA 57.571 30.769 0.00 0.00 0.00 1.40
2699 2738 6.933514 TTCCTTTCCAAGCCTAAATGATTT 57.066 33.333 0.00 0.00 0.00 2.17
2700 2739 6.933514 TTTCCTTTCCAAGCCTAAATGATT 57.066 33.333 0.00 0.00 0.00 2.57
2701 2740 6.725834 TCTTTTCCTTTCCAAGCCTAAATGAT 59.274 34.615 0.00 0.00 0.00 2.45
2702 2741 6.074648 TCTTTTCCTTTCCAAGCCTAAATGA 58.925 36.000 0.00 0.00 0.00 2.57
2703 2742 6.345096 TCTTTTCCTTTCCAAGCCTAAATG 57.655 37.500 0.00 0.00 0.00 2.32
2704 2743 7.673926 TGTATCTTTTCCTTTCCAAGCCTAAAT 59.326 33.333 0.00 0.00 0.00 1.40
2705 2744 7.007723 TGTATCTTTTCCTTTCCAAGCCTAAA 58.992 34.615 0.00 0.00 0.00 1.85
2706 2745 6.433093 GTGTATCTTTTCCTTTCCAAGCCTAA 59.567 38.462 0.00 0.00 0.00 2.69
2707 2746 5.944007 GTGTATCTTTTCCTTTCCAAGCCTA 59.056 40.000 0.00 0.00 0.00 3.93
2708 2747 4.767409 GTGTATCTTTTCCTTTCCAAGCCT 59.233 41.667 0.00 0.00 0.00 4.58
2709 2748 4.767409 AGTGTATCTTTTCCTTTCCAAGCC 59.233 41.667 0.00 0.00 0.00 4.35
2710 2749 5.473504 TGAGTGTATCTTTTCCTTTCCAAGC 59.526 40.000 0.00 0.00 0.00 4.01
2711 2750 7.510549 TTGAGTGTATCTTTTCCTTTCCAAG 57.489 36.000 0.00 0.00 0.00 3.61
2712 2751 7.094805 CGATTGAGTGTATCTTTTCCTTTCCAA 60.095 37.037 0.00 0.00 0.00 3.53
2713 2752 6.371548 CGATTGAGTGTATCTTTTCCTTTCCA 59.628 38.462 0.00 0.00 0.00 3.53
2714 2753 6.183360 CCGATTGAGTGTATCTTTTCCTTTCC 60.183 42.308 0.00 0.00 0.00 3.13
2715 2754 6.183360 CCCGATTGAGTGTATCTTTTCCTTTC 60.183 42.308 0.00 0.00 0.00 2.62
2716 2755 5.648092 CCCGATTGAGTGTATCTTTTCCTTT 59.352 40.000 0.00 0.00 0.00 3.11
2717 2756 5.186198 CCCGATTGAGTGTATCTTTTCCTT 58.814 41.667 0.00 0.00 0.00 3.36
2718 2757 4.384208 CCCCGATTGAGTGTATCTTTTCCT 60.384 45.833 0.00 0.00 0.00 3.36
2719 2758 3.877508 CCCCGATTGAGTGTATCTTTTCC 59.122 47.826 0.00 0.00 0.00 3.13
2720 2759 3.877508 CCCCCGATTGAGTGTATCTTTTC 59.122 47.826 0.00 0.00 0.00 2.29
2721 2760 3.521937 TCCCCCGATTGAGTGTATCTTTT 59.478 43.478 0.00 0.00 0.00 2.27
2722 2761 3.112263 TCCCCCGATTGAGTGTATCTTT 58.888 45.455 0.00 0.00 0.00 2.52
2723 2762 2.700897 CTCCCCCGATTGAGTGTATCTT 59.299 50.000 0.00 0.00 0.00 2.40
2724 2763 2.091278 TCTCCCCCGATTGAGTGTATCT 60.091 50.000 0.00 0.00 0.00 1.98
2725 2764 2.297597 CTCTCCCCCGATTGAGTGTATC 59.702 54.545 0.00 0.00 0.00 2.24
2726 2765 2.091278 TCTCTCCCCCGATTGAGTGTAT 60.091 50.000 0.00 0.00 0.00 2.29
2727 2766 1.286849 TCTCTCCCCCGATTGAGTGTA 59.713 52.381 0.00 0.00 0.00 2.90
2728 2767 0.041238 TCTCTCCCCCGATTGAGTGT 59.959 55.000 0.00 0.00 0.00 3.55
2729 2768 1.418334 ATCTCTCCCCCGATTGAGTG 58.582 55.000 0.00 0.00 0.00 3.51
2730 2769 2.178106 AGTATCTCTCCCCCGATTGAGT 59.822 50.000 0.00 0.00 0.00 3.41
2731 2770 2.883026 AGTATCTCTCCCCCGATTGAG 58.117 52.381 0.00 0.00 0.00 3.02
2732 2771 3.330126 AAGTATCTCTCCCCCGATTGA 57.670 47.619 0.00 0.00 0.00 2.57
2733 2772 3.244249 GGAAAGTATCTCTCCCCCGATTG 60.244 52.174 0.00 0.00 0.00 2.67
2734 2773 2.973406 GGAAAGTATCTCTCCCCCGATT 59.027 50.000 0.00 0.00 0.00 3.34
2735 2774 2.180308 AGGAAAGTATCTCTCCCCCGAT 59.820 50.000 0.00 0.00 0.00 4.18
2736 2775 1.574339 AGGAAAGTATCTCTCCCCCGA 59.426 52.381 0.00 0.00 0.00 5.14
2737 2776 2.089600 AGGAAAGTATCTCTCCCCCG 57.910 55.000 0.00 0.00 0.00 5.73
2738 2777 4.475381 AGAAAAGGAAAGTATCTCTCCCCC 59.525 45.833 0.00 0.00 0.00 5.40
2739 2778 5.702065 AGAAAAGGAAAGTATCTCTCCCC 57.298 43.478 0.00 0.00 0.00 4.81
2740 2779 6.953101 AGAAGAAAAGGAAAGTATCTCTCCC 58.047 40.000 0.00 0.00 0.00 4.30
2741 2780 7.847096 AGAGAAGAAAAGGAAAGTATCTCTCC 58.153 38.462 0.00 0.00 38.32 3.71
2763 2802 9.235537 CGATTGCATGTATCTCTCATTATAGAG 57.764 37.037 0.00 0.00 43.72 2.43
2764 2803 8.193438 CCGATTGCATGTATCTCTCATTATAGA 58.807 37.037 0.00 0.00 0.00 1.98
2765 2804 8.193438 TCCGATTGCATGTATCTCTCATTATAG 58.807 37.037 0.00 0.00 0.00 1.31
2766 2805 8.066612 TCCGATTGCATGTATCTCTCATTATA 57.933 34.615 0.00 0.00 0.00 0.98
2767 2806 6.939622 TCCGATTGCATGTATCTCTCATTAT 58.060 36.000 0.00 0.00 0.00 1.28
2768 2807 6.345096 TCCGATTGCATGTATCTCTCATTA 57.655 37.500 0.00 0.00 0.00 1.90
2769 2808 5.219343 TCCGATTGCATGTATCTCTCATT 57.781 39.130 0.00 0.00 0.00 2.57
2770 2809 4.322574 CCTCCGATTGCATGTATCTCTCAT 60.323 45.833 0.00 0.00 0.00 2.90
2771 2810 3.006217 CCTCCGATTGCATGTATCTCTCA 59.994 47.826 0.00 0.00 0.00 3.27
2772 2811 3.256879 TCCTCCGATTGCATGTATCTCTC 59.743 47.826 0.00 0.00 0.00 3.20
2773 2812 3.234353 TCCTCCGATTGCATGTATCTCT 58.766 45.455 0.00 0.00 0.00 3.10
2774 2813 3.256879 TCTCCTCCGATTGCATGTATCTC 59.743 47.826 0.00 0.00 0.00 2.75
2775 2814 3.234353 TCTCCTCCGATTGCATGTATCT 58.766 45.455 0.00 0.00 0.00 1.98
2776 2815 3.256879 TCTCTCCTCCGATTGCATGTATC 59.743 47.826 0.00 0.00 0.00 2.24
2777 2816 3.234353 TCTCTCCTCCGATTGCATGTAT 58.766 45.455 0.00 0.00 0.00 2.29
2778 2817 2.666317 TCTCTCCTCCGATTGCATGTA 58.334 47.619 0.00 0.00 0.00 2.29
2779 2818 1.489481 TCTCTCCTCCGATTGCATGT 58.511 50.000 0.00 0.00 0.00 3.21
2780 2819 2.612471 GGATCTCTCCTCCGATTGCATG 60.612 54.545 0.00 0.00 38.65 4.06
2781 2820 1.622811 GGATCTCTCCTCCGATTGCAT 59.377 52.381 0.00 0.00 38.65 3.96
2782 2821 1.043816 GGATCTCTCCTCCGATTGCA 58.956 55.000 0.00 0.00 38.65 4.08
2783 2822 3.904586 GGATCTCTCCTCCGATTGC 57.095 57.895 0.00 0.00 38.65 3.56
2809 2848 2.106857 TCCGTCTTTAGCCCTCCAAAAA 59.893 45.455 0.00 0.00 0.00 1.94
2810 2849 1.700739 TCCGTCTTTAGCCCTCCAAAA 59.299 47.619 0.00 0.00 0.00 2.44
2811 2850 1.354101 TCCGTCTTTAGCCCTCCAAA 58.646 50.000 0.00 0.00 0.00 3.28
2812 2851 1.354101 TTCCGTCTTTAGCCCTCCAA 58.646 50.000 0.00 0.00 0.00 3.53
2813 2852 1.580059 ATTCCGTCTTTAGCCCTCCA 58.420 50.000 0.00 0.00 0.00 3.86
2814 2853 2.711978 AATTCCGTCTTTAGCCCTCC 57.288 50.000 0.00 0.00 0.00 4.30
2815 2854 3.121544 CGTAATTCCGTCTTTAGCCCTC 58.878 50.000 0.00 0.00 0.00 4.30
2816 2855 2.762327 TCGTAATTCCGTCTTTAGCCCT 59.238 45.455 0.00 0.00 0.00 5.19
2817 2856 3.121544 CTCGTAATTCCGTCTTTAGCCC 58.878 50.000 0.00 0.00 0.00 5.19
2818 2857 3.121544 CCTCGTAATTCCGTCTTTAGCC 58.878 50.000 0.00 0.00 0.00 3.93
2819 2858 4.037858 TCCTCGTAATTCCGTCTTTAGC 57.962 45.455 0.00 0.00 0.00 3.09
2820 2859 8.638685 TTAATTCCTCGTAATTCCGTCTTTAG 57.361 34.615 0.00 0.00 31.63 1.85
2821 2860 9.434420 TTTTAATTCCTCGTAATTCCGTCTTTA 57.566 29.630 0.00 0.00 31.63 1.85
2822 2861 7.910441 TTTAATTCCTCGTAATTCCGTCTTT 57.090 32.000 0.00 0.00 31.63 2.52
2823 2862 7.820872 TCTTTTAATTCCTCGTAATTCCGTCTT 59.179 33.333 0.00 0.00 31.63 3.01
2824 2863 7.325694 TCTTTTAATTCCTCGTAATTCCGTCT 58.674 34.615 0.00 0.00 31.63 4.18
2825 2864 7.529880 TCTTTTAATTCCTCGTAATTCCGTC 57.470 36.000 0.00 0.00 31.63 4.79
2826 2865 7.910441 TTCTTTTAATTCCTCGTAATTCCGT 57.090 32.000 0.00 0.00 31.63 4.69
2827 2866 9.221775 CATTTCTTTTAATTCCTCGTAATTCCG 57.778 33.333 0.00 0.00 31.63 4.30
2828 2867 9.020813 GCATTTCTTTTAATTCCTCGTAATTCC 57.979 33.333 0.00 0.00 31.63 3.01
2829 2868 9.567848 TGCATTTCTTTTAATTCCTCGTAATTC 57.432 29.630 0.00 0.00 31.63 2.17
2830 2869 9.353999 GTGCATTTCTTTTAATTCCTCGTAATT 57.646 29.630 0.00 0.00 33.69 1.40
2831 2870 7.973944 GGTGCATTTCTTTTAATTCCTCGTAAT 59.026 33.333 0.00 0.00 0.00 1.89
2832 2871 7.175990 AGGTGCATTTCTTTTAATTCCTCGTAA 59.824 33.333 0.00 0.00 0.00 3.18
2833 2872 6.657541 AGGTGCATTTCTTTTAATTCCTCGTA 59.342 34.615 0.00 0.00 0.00 3.43
2834 2873 5.476945 AGGTGCATTTCTTTTAATTCCTCGT 59.523 36.000 0.00 0.00 0.00 4.18
2835 2874 5.954335 AGGTGCATTTCTTTTAATTCCTCG 58.046 37.500 0.00 0.00 0.00 4.63
2836 2875 8.303876 TGTAAGGTGCATTTCTTTTAATTCCTC 58.696 33.333 0.00 0.00 0.00 3.71
2837 2876 8.189119 TGTAAGGTGCATTTCTTTTAATTCCT 57.811 30.769 0.00 0.00 0.00 3.36
2838 2877 8.872845 CATGTAAGGTGCATTTCTTTTAATTCC 58.127 33.333 0.00 0.00 0.00 3.01
2839 2878 8.872845 CCATGTAAGGTGCATTTCTTTTAATTC 58.127 33.333 0.00 0.00 0.00 2.17
2840 2879 8.374743 ACCATGTAAGGTGCATTTCTTTTAATT 58.625 29.630 0.00 0.00 41.30 1.40
2841 2880 7.906327 ACCATGTAAGGTGCATTTCTTTTAAT 58.094 30.769 0.00 0.00 41.30 1.40
2842 2881 7.296628 ACCATGTAAGGTGCATTTCTTTTAA 57.703 32.000 0.00 0.00 41.30 1.52
2843 2882 6.909550 ACCATGTAAGGTGCATTTCTTTTA 57.090 33.333 0.00 0.00 41.30 1.52
2844 2883 5.806654 ACCATGTAAGGTGCATTTCTTTT 57.193 34.783 0.00 0.00 41.30 2.27
2855 2894 5.015817 TCCCTAAAATTCCACCATGTAAGGT 59.984 40.000 0.00 0.00 44.48 3.50
2856 2895 5.515106 TCCCTAAAATTCCACCATGTAAGG 58.485 41.667 0.00 0.00 0.00 2.69
2857 2896 6.187682 ACTCCCTAAAATTCCACCATGTAAG 58.812 40.000 0.00 0.00 0.00 2.34
2858 2897 6.147437 ACTCCCTAAAATTCCACCATGTAA 57.853 37.500 0.00 0.00 0.00 2.41
2859 2898 5.789574 ACTCCCTAAAATTCCACCATGTA 57.210 39.130 0.00 0.00 0.00 2.29
2860 2899 4.675063 ACTCCCTAAAATTCCACCATGT 57.325 40.909 0.00 0.00 0.00 3.21
2861 2900 5.505780 TGTACTCCCTAAAATTCCACCATG 58.494 41.667 0.00 0.00 0.00 3.66
2862 2901 5.789574 TGTACTCCCTAAAATTCCACCAT 57.210 39.130 0.00 0.00 0.00 3.55
2863 2902 5.789574 ATGTACTCCCTAAAATTCCACCA 57.210 39.130 0.00 0.00 0.00 4.17
2864 2903 6.890268 AGAAATGTACTCCCTAAAATTCCACC 59.110 38.462 0.00 0.00 0.00 4.61
2865 2904 7.939784 AGAAATGTACTCCCTAAAATTCCAC 57.060 36.000 0.00 0.00 0.00 4.02
2866 2905 8.832735 AGTAGAAATGTACTCCCTAAAATTCCA 58.167 33.333 0.00 0.00 0.00 3.53
2867 2906 9.110502 CAGTAGAAATGTACTCCCTAAAATTCC 57.889 37.037 0.00 0.00 30.40 3.01
2868 2907 9.886132 TCAGTAGAAATGTACTCCCTAAAATTC 57.114 33.333 0.00 0.00 30.40 2.17
2874 2913 9.877222 TGATATTCAGTAGAAATGTACTCCCTA 57.123 33.333 0.00 0.00 37.29 3.53
2915 2954 5.875224 TCAGTAGAAATGTGGAATGGTCAA 58.125 37.500 0.00 0.00 0.00 3.18
2917 2956 8.682936 ATATTCAGTAGAAATGTGGAATGGTC 57.317 34.615 0.00 0.00 37.29 4.02
3040 3080 1.538876 CTGGAGTCCCCCTGTTGGA 60.539 63.158 6.74 0.00 35.39 3.53
3051 3091 9.262358 GAGTATAAACATATTGGAACTGGAGTC 57.738 37.037 0.00 0.00 0.00 3.36
3099 3139 8.494433 ACCATTGAGCTCCTATTCAGTAATTTA 58.506 33.333 12.15 0.00 0.00 1.40
3465 3509 7.369803 TGCAAAGATCTCTTGATGTACTTTC 57.630 36.000 16.82 0.00 36.12 2.62
3591 3637 3.117512 AGGCCCATAAAGGTGGACTAATG 60.118 47.826 0.00 0.00 42.02 1.90
3667 3719 3.181467 CCAAATTGCACAGGAACTCCAAA 60.181 43.478 0.00 0.00 34.60 3.28
3882 3937 4.956075 TCACCTAGACATACAGAAGCATGA 59.044 41.667 0.00 0.00 0.00 3.07
3896 3951 7.769044 TGTTCCAATAGCTAAAATCACCTAGAC 59.231 37.037 0.00 0.00 0.00 2.59
4083 4138 3.880047 AATAATTCAGTCCGGTCGACA 57.120 42.857 18.91 0.00 44.66 4.35
4167 4244 6.751425 CACAGTTAACAAGAAACAATTCTGCA 59.249 34.615 8.61 0.00 45.19 4.41
4168 4245 6.198966 CCACAGTTAACAAGAAACAATTCTGC 59.801 38.462 8.61 0.00 45.19 4.26
4169 4246 7.257722 ACCACAGTTAACAAGAAACAATTCTG 58.742 34.615 8.61 0.00 45.19 3.02
4171 4248 9.575783 TTTACCACAGTTAACAAGAAACAATTC 57.424 29.630 8.61 0.00 35.70 2.17
4172 4249 9.361315 GTTTACCACAGTTAACAAGAAACAATT 57.639 29.630 8.61 0.00 35.94 2.32
4174 4251 8.024285 CAGTTTACCACAGTTAACAAGAAACAA 58.976 33.333 8.61 0.00 37.85 2.83
4198 4306 5.334414 GGCAACTATGTGAGTTCAAGTTCAG 60.334 44.000 0.00 0.00 45.81 3.02
4216 4324 1.886542 GTTCTTTTCATCCCGGCAACT 59.113 47.619 0.00 0.00 0.00 3.16
4223 4331 6.635030 AGTTACAACTGTTCTTTTCATCCC 57.365 37.500 0.00 0.00 37.98 3.85
4227 4335 7.045416 TGCTCTAGTTACAACTGTTCTTTTCA 58.955 34.615 4.86 0.00 40.07 2.69
4313 4433 0.877071 CAGCGCTGTCCATGAAACTT 59.123 50.000 29.24 0.00 0.00 2.66
4665 4786 1.012086 CATGGAGTGGAAGCGTGATG 58.988 55.000 0.00 0.00 0.00 3.07
4761 4889 3.659786 TGACCGTTTGATGATCGAAGTT 58.340 40.909 0.00 0.00 0.00 2.66
4778 4914 4.769859 TTACGGGTAAAATGCTTTGACC 57.230 40.909 6.62 6.62 0.00 4.02
4781 4917 7.506474 GTCAAATTTACGGGTAAAATGCTTTG 58.494 34.615 15.36 15.36 38.38 2.77
4788 4924 7.568497 CGTTAGTCGTCAAATTTACGGGTAAAA 60.568 37.037 7.97 0.00 40.68 1.52
4793 4929 3.061161 CCGTTAGTCGTCAAATTTACGGG 59.939 47.826 14.31 6.71 42.48 5.28
4826 4967 9.363028 CTTCATCGAAGATCCCATCTGGAGAAT 62.363 44.444 0.00 0.00 45.12 2.40
5224 5365 4.039973 TGAAAGGAGAAACTATCACGGTGT 59.960 41.667 8.17 0.00 0.00 4.16
5288 5429 2.192608 AAGCACGACCTACGACCGTC 62.193 60.000 0.00 0.00 45.77 4.79
5293 5434 4.697514 AGTATACTAAGCACGACCTACGA 58.302 43.478 2.75 0.00 45.77 3.43
5357 5498 3.834799 CCTACCCACCTCGACGGC 61.835 72.222 0.00 0.00 35.61 5.68
5454 5595 4.010349 CCCTAAAACTCCAGCGAAATTCT 58.990 43.478 0.00 0.00 0.00 2.40
5489 5630 6.199908 CACAAGGATTCTATTCGCTTCTGTAG 59.800 42.308 0.00 0.00 0.00 2.74
5491 5632 4.872691 CACAAGGATTCTATTCGCTTCTGT 59.127 41.667 0.00 0.00 0.00 3.41
5494 5635 5.582665 AGTTCACAAGGATTCTATTCGCTTC 59.417 40.000 0.00 0.00 0.00 3.86
5495 5636 5.491982 AGTTCACAAGGATTCTATTCGCTT 58.508 37.500 0.00 0.00 0.00 4.68
5496 5637 5.091261 AGTTCACAAGGATTCTATTCGCT 57.909 39.130 0.00 0.00 0.00 4.93
5507 5649 5.382664 ACCTTAGGAAAAGTTCACAAGGA 57.617 39.130 19.03 0.00 41.24 3.36
5545 5712 2.688507 GAAACATCACGGCTCTCTCAA 58.311 47.619 0.00 0.00 0.00 3.02
5572 5739 1.331399 TGGACACGTTGTGAGGGTGA 61.331 55.000 3.61 0.00 36.96 4.02
5589 5756 2.401766 GCAACAGACGGAGGCATGG 61.402 63.158 0.00 0.00 0.00 3.66
5629 5807 4.142293 TGTGTGCTAGAGATGCTCTAACAG 60.142 45.833 7.58 0.00 41.74 3.16
5649 5827 2.669364 GGGTCGGCGTTATATAGTGTG 58.331 52.381 6.85 0.00 0.00 3.82
5652 5830 1.609208 ACGGGTCGGCGTTATATAGT 58.391 50.000 6.85 0.00 0.00 2.12
5654 5832 4.295051 GTTTTACGGGTCGGCGTTATATA 58.705 43.478 6.85 0.00 0.00 0.86
5655 5833 3.123050 GTTTTACGGGTCGGCGTTATAT 58.877 45.455 6.85 0.00 0.00 0.86
5671 5849 4.565962 TCTGCGAACTGTAAACACGTTTTA 59.434 37.500 0.00 0.00 34.23 1.52
5678 5856 4.336101 CGTTTTTCTGCGAACTGTAAACA 58.664 39.130 12.40 0.00 0.00 2.83
5692 5870 1.362355 CCCGCAAAGCCGTTTTTCT 59.638 52.632 0.00 0.00 0.00 2.52
5729 5907 1.164041 CGTTTTGCGGGGTCTGACTT 61.164 55.000 7.85 0.00 36.85 3.01
5770 5948 3.866651 CATCTTCGATCCCTTGTTCTGT 58.133 45.455 0.00 0.00 0.00 3.41
5898 7625 2.046700 CCTACGAAAAGGCCGGCA 60.047 61.111 30.85 3.21 0.00 5.69
5947 7674 4.388499 GCCGGCGGAGAAGGTGAA 62.388 66.667 33.44 0.00 0.00 3.18
6173 7904 2.988839 GCCATGGAAGCCTCCCAGT 61.989 63.158 18.40 0.00 41.64 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.