Multiple sequence alignment - TraesCS1D01G205400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G205400 chr1D 100.000 3106 0 0 956 4061 290711792 290708687 0.000000e+00 5736.0
1 TraesCS1D01G205400 chr1D 100.000 373 0 0 1 373 290712747 290712375 0.000000e+00 689.0
2 TraesCS1D01G205400 chr1B 96.205 1897 72 0 1009 2905 391967033 391965137 0.000000e+00 3105.0
3 TraesCS1D01G205400 chr1B 90.401 573 34 6 3507 4061 391964591 391964022 0.000000e+00 734.0
4 TraesCS1D01G205400 chr1B 93.750 352 14 4 2954 3299 391965137 391964788 4.650000e-144 521.0
5 TraesCS1D01G205400 chr1B 77.534 365 57 15 1 347 277966406 277966049 3.200000e-46 196.0
6 TraesCS1D01G205400 chr1B 95.122 82 4 0 3344 3425 391964775 391964694 3.290000e-26 130.0
7 TraesCS1D01G205400 chr1B 92.308 39 1 2 2653 2689 391964919 391964881 2.000000e-03 54.7
8 TraesCS1D01G205400 chrUn 95.762 1864 79 0 1009 2872 319432375 319434238 0.000000e+00 3005.0
9 TraesCS1D01G205400 chr1A 95.762 1864 79 0 1009 2872 363015584 363013721 0.000000e+00 3005.0
10 TraesCS1D01G205400 chr1A 95.762 1864 79 0 1009 2872 363039707 363037844 0.000000e+00 3005.0
11 TraesCS1D01G205400 chr1A 91.084 729 28 9 3359 4060 363008619 363007901 0.000000e+00 952.0
12 TraesCS1D01G205400 chr1A 93.750 416 19 4 2870 3278 363009044 363008629 5.770000e-173 617.0
13 TraesCS1D01G205400 chr1A 92.308 39 1 2 2653 2689 363008740 363008702 2.000000e-03 54.7
14 TraesCS1D01G205400 chr3B 82.215 298 35 7 1 281 558079252 558079548 1.460000e-59 241.0
15 TraesCS1D01G205400 chr4D 90.164 61 4 1 3288 3348 368730458 368730400 1.210000e-10 78.7
16 TraesCS1D01G205400 chr3D 90.698 43 4 0 3307 3349 30395754 30395712 1.580000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G205400 chr1D 290708687 290712747 4060 True 3212.500000 5736 100.000000 1 4061 2 chr1D.!!$R1 4060
1 TraesCS1D01G205400 chr1B 391964022 391967033 3011 True 908.940000 3105 93.557200 1009 4061 5 chr1B.!!$R2 3052
2 TraesCS1D01G205400 chrUn 319432375 319434238 1863 False 3005.000000 3005 95.762000 1009 2872 1 chrUn.!!$F1 1863
3 TraesCS1D01G205400 chr1A 363013721 363015584 1863 True 3005.000000 3005 95.762000 1009 2872 1 chr1A.!!$R1 1863
4 TraesCS1D01G205400 chr1A 363037844 363039707 1863 True 3005.000000 3005 95.762000 1009 2872 1 chr1A.!!$R2 1863
5 TraesCS1D01G205400 chr1A 363007901 363009044 1143 True 541.233333 952 92.380667 2653 4060 3 chr1A.!!$R3 1407

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
163 164 0.036952 CGATCAGTGGTCTGCAAGGT 60.037 55.0 1.10 0.00 41.1 3.50 F
1565 1566 0.107214 AGCACCATGGTTACCGGATG 60.107 55.0 16.84 2.04 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2045 2046 0.822164 GACTGCCGTACCTACCATGT 59.178 55.0 0.00 0.0 0.0 3.21 R
3236 3244 0.321671 GCACAGGACAGCTGGAACTA 59.678 55.0 19.93 0.0 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.993535 GTGGAGCAGGAAGGCTTG 58.006 61.111 3.46 0.00 45.99 4.01
18 19 1.376466 GTGGAGCAGGAAGGCTTGA 59.624 57.895 3.46 0.00 45.99 3.02
19 20 0.676151 GTGGAGCAGGAAGGCTTGAG 60.676 60.000 3.46 0.00 45.99 3.02
20 21 0.837691 TGGAGCAGGAAGGCTTGAGA 60.838 55.000 3.46 0.00 45.99 3.27
21 22 0.326264 GGAGCAGGAAGGCTTGAGAA 59.674 55.000 3.46 0.00 45.99 2.87
22 23 1.064832 GGAGCAGGAAGGCTTGAGAAT 60.065 52.381 3.46 0.00 45.99 2.40
23 24 2.287769 GAGCAGGAAGGCTTGAGAATC 58.712 52.381 3.46 0.00 45.99 2.52
24 25 1.914798 AGCAGGAAGGCTTGAGAATCT 59.085 47.619 3.46 0.00 42.71 2.40
25 26 3.110705 AGCAGGAAGGCTTGAGAATCTA 58.889 45.455 3.46 0.00 42.71 1.98
26 27 3.521126 AGCAGGAAGGCTTGAGAATCTAA 59.479 43.478 3.46 0.00 42.71 2.10
27 28 4.165758 AGCAGGAAGGCTTGAGAATCTAAT 59.834 41.667 3.46 0.00 42.71 1.73
28 29 4.886489 GCAGGAAGGCTTGAGAATCTAATT 59.114 41.667 3.46 0.00 34.92 1.40
29 30 6.058183 GCAGGAAGGCTTGAGAATCTAATTA 58.942 40.000 3.46 0.00 34.92 1.40
30 31 6.543831 GCAGGAAGGCTTGAGAATCTAATTAA 59.456 38.462 3.46 0.00 34.92 1.40
31 32 7.230309 GCAGGAAGGCTTGAGAATCTAATTAAT 59.770 37.037 3.46 0.00 34.92 1.40
32 33 8.782144 CAGGAAGGCTTGAGAATCTAATTAATC 58.218 37.037 3.46 0.00 34.92 1.75
33 34 7.941790 AGGAAGGCTTGAGAATCTAATTAATCC 59.058 37.037 3.46 0.00 34.92 3.01
34 35 7.721399 GGAAGGCTTGAGAATCTAATTAATCCA 59.279 37.037 3.46 0.00 34.92 3.41
35 36 8.457238 AAGGCTTGAGAATCTAATTAATCCAC 57.543 34.615 0.00 0.00 34.92 4.02
36 37 7.810260 AGGCTTGAGAATCTAATTAATCCACT 58.190 34.615 0.00 0.00 34.92 4.00
37 38 8.277918 AGGCTTGAGAATCTAATTAATCCACTT 58.722 33.333 0.00 0.00 34.92 3.16
38 39 8.563732 GGCTTGAGAATCTAATTAATCCACTTC 58.436 37.037 0.00 0.00 34.92 3.01
39 40 9.113838 GCTTGAGAATCTAATTAATCCACTTCA 57.886 33.333 0.00 0.00 34.92 3.02
42 43 9.060347 TGAGAATCTAATTAATCCACTTCATGC 57.940 33.333 0.00 0.00 34.92 4.06
43 44 9.282569 GAGAATCTAATTAATCCACTTCATGCT 57.717 33.333 0.00 0.00 0.00 3.79
44 45 9.064706 AGAATCTAATTAATCCACTTCATGCTG 57.935 33.333 0.00 0.00 0.00 4.41
45 46 8.985315 AATCTAATTAATCCACTTCATGCTGA 57.015 30.769 0.00 0.00 0.00 4.26
46 47 8.985315 ATCTAATTAATCCACTTCATGCTGAA 57.015 30.769 0.00 0.00 34.79 3.02
47 48 8.806429 TCTAATTAATCCACTTCATGCTGAAA 57.194 30.769 0.00 0.00 35.73 2.69
48 49 9.412460 TCTAATTAATCCACTTCATGCTGAAAT 57.588 29.630 0.00 0.00 35.73 2.17
53 54 9.806203 TTAATCCACTTCATGCTGAAATATTTG 57.194 29.630 5.17 0.00 35.73 2.32
54 55 5.653507 TCCACTTCATGCTGAAATATTTGC 58.346 37.500 5.17 4.51 35.73 3.68
55 56 5.419788 TCCACTTCATGCTGAAATATTTGCT 59.580 36.000 5.17 0.00 35.73 3.91
56 57 6.071221 TCCACTTCATGCTGAAATATTTGCTT 60.071 34.615 5.17 0.00 35.73 3.91
57 58 6.255020 CCACTTCATGCTGAAATATTTGCTTC 59.745 38.462 5.17 0.00 35.73 3.86
58 59 6.809689 CACTTCATGCTGAAATATTTGCTTCA 59.190 34.615 5.17 0.00 35.73 3.02
59 60 7.491372 CACTTCATGCTGAAATATTTGCTTCAT 59.509 33.333 5.17 1.37 35.73 2.57
60 61 7.491372 ACTTCATGCTGAAATATTTGCTTCATG 59.509 33.333 5.17 12.44 35.73 3.07
61 62 6.277605 TCATGCTGAAATATTTGCTTCATGG 58.722 36.000 5.17 0.94 31.40 3.66
62 63 5.013568 TGCTGAAATATTTGCTTCATGGG 57.986 39.130 5.17 0.00 31.40 4.00
63 64 3.805971 GCTGAAATATTTGCTTCATGGGC 59.194 43.478 5.17 0.00 31.40 5.36
64 65 4.374399 CTGAAATATTTGCTTCATGGGCC 58.626 43.478 5.17 0.00 31.40 5.80
65 66 3.773667 TGAAATATTTGCTTCATGGGCCA 59.226 39.130 9.61 9.61 0.00 5.36
66 67 4.224594 TGAAATATTTGCTTCATGGGCCAA 59.775 37.500 11.89 0.00 0.00 4.52
67 68 4.411256 AATATTTGCTTCATGGGCCAAG 57.589 40.909 11.89 6.29 0.00 3.61
68 69 0.251073 ATTTGCTTCATGGGCCAAGC 59.749 50.000 19.52 19.52 44.55 4.01
69 70 0.832983 TTTGCTTCATGGGCCAAGCT 60.833 50.000 24.80 1.00 44.59 3.74
70 71 1.537814 TTGCTTCATGGGCCAAGCTG 61.538 55.000 24.80 13.86 44.59 4.24
71 72 2.718073 GCTTCATGGGCCAAGCTGG 61.718 63.158 19.15 6.92 41.61 4.85
84 85 3.490890 GCTGGCTGCGTCTAAAGG 58.509 61.111 0.00 0.00 0.00 3.11
85 86 1.079127 GCTGGCTGCGTCTAAAGGA 60.079 57.895 0.00 0.00 0.00 3.36
86 87 0.673644 GCTGGCTGCGTCTAAAGGAA 60.674 55.000 0.00 0.00 0.00 3.36
87 88 2.014068 GCTGGCTGCGTCTAAAGGAAT 61.014 52.381 0.00 0.00 0.00 3.01
88 89 1.936547 CTGGCTGCGTCTAAAGGAATC 59.063 52.381 0.00 0.00 0.00 2.52
89 90 1.277842 TGGCTGCGTCTAAAGGAATCA 59.722 47.619 0.00 0.00 0.00 2.57
90 91 1.666189 GGCTGCGTCTAAAGGAATCAC 59.334 52.381 0.00 0.00 0.00 3.06
91 92 2.622436 GCTGCGTCTAAAGGAATCACT 58.378 47.619 0.00 0.00 0.00 3.41
92 93 3.430374 GGCTGCGTCTAAAGGAATCACTA 60.430 47.826 0.00 0.00 0.00 2.74
93 94 4.372656 GCTGCGTCTAAAGGAATCACTAT 58.627 43.478 0.00 0.00 0.00 2.12
94 95 4.811557 GCTGCGTCTAAAGGAATCACTATT 59.188 41.667 0.00 0.00 0.00 1.73
95 96 5.983720 GCTGCGTCTAAAGGAATCACTATTA 59.016 40.000 0.00 0.00 0.00 0.98
96 97 6.647067 GCTGCGTCTAAAGGAATCACTATTAT 59.353 38.462 0.00 0.00 0.00 1.28
97 98 7.148722 GCTGCGTCTAAAGGAATCACTATTATC 60.149 40.741 0.00 0.00 0.00 1.75
98 99 7.952671 TGCGTCTAAAGGAATCACTATTATCT 58.047 34.615 0.00 0.00 0.00 1.98
99 100 7.867909 TGCGTCTAAAGGAATCACTATTATCTG 59.132 37.037 0.00 0.00 0.00 2.90
100 101 7.148722 GCGTCTAAAGGAATCACTATTATCTGC 60.149 40.741 0.00 0.00 0.00 4.26
101 102 8.085296 CGTCTAAAGGAATCACTATTATCTGCT 58.915 37.037 0.00 0.00 0.00 4.24
102 103 9.771534 GTCTAAAGGAATCACTATTATCTGCTT 57.228 33.333 0.00 0.00 0.00 3.91
103 104 9.988815 TCTAAAGGAATCACTATTATCTGCTTC 57.011 33.333 0.00 0.00 0.00 3.86
104 105 7.721286 AAAGGAATCACTATTATCTGCTTCG 57.279 36.000 0.00 0.00 0.00 3.79
105 106 6.656632 AGGAATCACTATTATCTGCTTCGA 57.343 37.500 0.00 0.00 0.00 3.71
106 107 7.055667 AGGAATCACTATTATCTGCTTCGAA 57.944 36.000 0.00 0.00 0.00 3.71
107 108 7.500992 AGGAATCACTATTATCTGCTTCGAAA 58.499 34.615 0.00 0.00 0.00 3.46
108 109 7.439655 AGGAATCACTATTATCTGCTTCGAAAC 59.560 37.037 0.00 0.00 0.00 2.78
109 110 7.439655 GGAATCACTATTATCTGCTTCGAAACT 59.560 37.037 0.00 0.00 0.00 2.66
110 111 7.706281 ATCACTATTATCTGCTTCGAAACTG 57.294 36.000 0.00 0.00 0.00 3.16
111 112 6.863275 TCACTATTATCTGCTTCGAAACTGA 58.137 36.000 10.07 10.07 0.00 3.41
112 113 6.752351 TCACTATTATCTGCTTCGAAACTGAC 59.248 38.462 9.89 0.00 0.00 3.51
113 114 6.754209 CACTATTATCTGCTTCGAAACTGACT 59.246 38.462 9.89 3.87 0.00 3.41
114 115 6.975772 ACTATTATCTGCTTCGAAACTGACTC 59.024 38.462 9.89 0.00 0.00 3.36
115 116 2.440539 TCTGCTTCGAAACTGACTCC 57.559 50.000 0.00 0.00 0.00 3.85
116 117 1.686587 TCTGCTTCGAAACTGACTCCA 59.313 47.619 0.00 0.00 0.00 3.86
117 118 2.300152 TCTGCTTCGAAACTGACTCCAT 59.700 45.455 0.00 0.00 0.00 3.41
118 119 2.414481 CTGCTTCGAAACTGACTCCATG 59.586 50.000 0.00 0.00 0.00 3.66
119 120 2.224281 TGCTTCGAAACTGACTCCATGT 60.224 45.455 0.00 0.00 0.00 3.21
120 121 2.808543 GCTTCGAAACTGACTCCATGTT 59.191 45.455 0.00 0.00 0.00 2.71
121 122 3.364366 GCTTCGAAACTGACTCCATGTTG 60.364 47.826 0.00 0.00 0.00 3.33
122 123 2.143122 TCGAAACTGACTCCATGTTGC 58.857 47.619 0.00 0.00 0.00 4.17
123 124 2.146342 CGAAACTGACTCCATGTTGCT 58.854 47.619 0.00 0.00 0.00 3.91
124 125 3.006430 TCGAAACTGACTCCATGTTGCTA 59.994 43.478 0.00 0.00 0.00 3.49
125 126 3.745975 CGAAACTGACTCCATGTTGCTAA 59.254 43.478 0.00 0.00 0.00 3.09
126 127 4.213270 CGAAACTGACTCCATGTTGCTAAA 59.787 41.667 0.00 0.00 0.00 1.85
127 128 5.277779 CGAAACTGACTCCATGTTGCTAAAA 60.278 40.000 0.00 0.00 0.00 1.52
128 129 5.438761 AACTGACTCCATGTTGCTAAAAC 57.561 39.130 0.00 0.00 0.00 2.43
129 130 4.460263 ACTGACTCCATGTTGCTAAAACA 58.540 39.130 0.00 0.00 34.31 2.83
130 131 4.887071 ACTGACTCCATGTTGCTAAAACAA 59.113 37.500 0.00 0.00 33.42 2.83
131 132 5.009010 ACTGACTCCATGTTGCTAAAACAAG 59.991 40.000 0.00 0.00 33.42 3.16
132 133 4.278170 TGACTCCATGTTGCTAAAACAAGG 59.722 41.667 6.21 6.21 39.59 3.61
133 134 4.469657 ACTCCATGTTGCTAAAACAAGGA 58.530 39.130 12.92 12.92 43.29 3.36
134 135 5.079643 ACTCCATGTTGCTAAAACAAGGAT 58.920 37.500 13.70 4.46 44.09 3.24
135 136 5.047802 ACTCCATGTTGCTAAAACAAGGATG 60.048 40.000 13.70 10.89 44.09 3.51
136 137 5.076182 TCCATGTTGCTAAAACAAGGATGA 58.924 37.500 10.28 0.00 41.43 2.92
137 138 5.183713 TCCATGTTGCTAAAACAAGGATGAG 59.816 40.000 10.28 0.00 41.43 2.90
138 139 4.503741 TGTTGCTAAAACAAGGATGAGC 57.496 40.909 0.00 0.00 0.00 4.26
139 140 3.888323 TGTTGCTAAAACAAGGATGAGCA 59.112 39.130 0.00 0.00 38.12 4.26
140 141 4.340666 TGTTGCTAAAACAAGGATGAGCAA 59.659 37.500 3.13 3.13 45.07 3.91
141 142 4.771590 TGCTAAAACAAGGATGAGCAAG 57.228 40.909 0.00 0.00 37.01 4.01
142 143 4.397420 TGCTAAAACAAGGATGAGCAAGA 58.603 39.130 0.00 0.00 37.01 3.02
143 144 5.012239 TGCTAAAACAAGGATGAGCAAGAT 58.988 37.500 0.00 0.00 37.01 2.40
144 145 5.124457 TGCTAAAACAAGGATGAGCAAGATC 59.876 40.000 0.00 0.00 37.01 2.75
145 146 4.691860 AAAACAAGGATGAGCAAGATCG 57.308 40.909 0.00 0.00 0.00 3.69
146 147 3.616956 AACAAGGATGAGCAAGATCGA 57.383 42.857 0.00 0.00 0.00 3.59
147 148 3.834489 ACAAGGATGAGCAAGATCGAT 57.166 42.857 0.00 0.00 0.00 3.59
148 149 3.726607 ACAAGGATGAGCAAGATCGATC 58.273 45.455 17.91 17.91 0.00 3.69
149 150 3.133542 ACAAGGATGAGCAAGATCGATCA 59.866 43.478 26.47 7.41 35.45 2.92
150 151 3.663995 AGGATGAGCAAGATCGATCAG 57.336 47.619 26.47 18.73 34.26 2.90
151 152 2.964464 AGGATGAGCAAGATCGATCAGT 59.036 45.455 26.47 11.69 34.26 3.41
152 153 3.058450 GGATGAGCAAGATCGATCAGTG 58.942 50.000 26.47 22.54 34.26 3.66
153 154 2.591571 TGAGCAAGATCGATCAGTGG 57.408 50.000 26.47 13.43 0.00 4.00
154 155 1.827344 TGAGCAAGATCGATCAGTGGT 59.173 47.619 26.47 25.62 0.00 4.16
155 156 2.159184 TGAGCAAGATCGATCAGTGGTC 60.159 50.000 32.86 32.86 39.74 4.02
156 157 2.100584 GAGCAAGATCGATCAGTGGTCT 59.899 50.000 32.55 21.51 37.99 3.85
157 158 2.159128 AGCAAGATCGATCAGTGGTCTG 60.159 50.000 26.47 12.21 42.54 3.51
158 159 2.200067 CAAGATCGATCAGTGGTCTGC 58.800 52.381 26.47 0.00 41.10 4.26
159 160 1.478631 AGATCGATCAGTGGTCTGCA 58.521 50.000 26.47 0.00 41.10 4.41
160 161 1.827344 AGATCGATCAGTGGTCTGCAA 59.173 47.619 26.47 0.00 41.10 4.08
161 162 2.159128 AGATCGATCAGTGGTCTGCAAG 60.159 50.000 26.47 0.00 41.10 4.01
162 163 0.247460 TCGATCAGTGGTCTGCAAGG 59.753 55.000 1.10 0.00 41.10 3.61
163 164 0.036952 CGATCAGTGGTCTGCAAGGT 60.037 55.000 1.10 0.00 41.10 3.50
164 165 1.204704 CGATCAGTGGTCTGCAAGGTA 59.795 52.381 1.10 0.00 41.10 3.08
165 166 2.622436 GATCAGTGGTCTGCAAGGTAC 58.378 52.381 0.00 0.00 41.10 3.34
166 167 1.717032 TCAGTGGTCTGCAAGGTACT 58.283 50.000 0.00 0.00 40.56 2.73
167 168 2.884320 TCAGTGGTCTGCAAGGTACTA 58.116 47.619 0.00 0.00 38.75 1.82
168 169 2.826128 TCAGTGGTCTGCAAGGTACTAG 59.174 50.000 0.00 0.00 38.75 2.57
169 170 1.550976 AGTGGTCTGCAAGGTACTAGC 59.449 52.381 0.00 0.00 38.49 3.42
170 171 0.530744 TGGTCTGCAAGGTACTAGCG 59.469 55.000 0.00 0.00 38.49 4.26
171 172 0.179108 GGTCTGCAAGGTACTAGCGG 60.179 60.000 7.07 7.07 38.49 5.52
172 173 0.815734 GTCTGCAAGGTACTAGCGGA 59.184 55.000 10.69 10.69 38.49 5.54
173 174 1.103803 TCTGCAAGGTACTAGCGGAG 58.896 55.000 10.69 1.23 38.49 4.63
174 175 0.818296 CTGCAAGGTACTAGCGGAGT 59.182 55.000 7.49 0.00 38.49 3.85
175 176 1.204941 CTGCAAGGTACTAGCGGAGTT 59.795 52.381 7.49 0.00 38.49 3.01
176 177 1.067142 TGCAAGGTACTAGCGGAGTTG 60.067 52.381 0.00 0.00 38.49 3.16
177 178 1.203994 GCAAGGTACTAGCGGAGTTGA 59.796 52.381 0.00 0.00 38.49 3.18
178 179 2.353406 GCAAGGTACTAGCGGAGTTGAA 60.353 50.000 0.00 0.00 38.49 2.69
179 180 3.863400 GCAAGGTACTAGCGGAGTTGAAA 60.863 47.826 0.00 0.00 38.49 2.69
180 181 3.870633 AGGTACTAGCGGAGTTGAAAG 57.129 47.619 0.00 0.00 39.81 2.62
181 182 3.163467 AGGTACTAGCGGAGTTGAAAGT 58.837 45.455 0.00 0.00 39.81 2.66
182 183 3.056749 AGGTACTAGCGGAGTTGAAAGTG 60.057 47.826 0.00 0.00 39.81 3.16
183 184 3.305881 GGTACTAGCGGAGTTGAAAGTGT 60.306 47.826 0.00 0.00 39.81 3.55
184 185 3.470645 ACTAGCGGAGTTGAAAGTGTT 57.529 42.857 0.00 0.00 33.13 3.32
185 186 3.391049 ACTAGCGGAGTTGAAAGTGTTC 58.609 45.455 0.00 0.00 33.13 3.18
186 187 1.594331 AGCGGAGTTGAAAGTGTTCC 58.406 50.000 0.00 0.00 32.28 3.62
187 188 1.141053 AGCGGAGTTGAAAGTGTTCCT 59.859 47.619 0.00 0.00 32.28 3.36
188 189 1.264288 GCGGAGTTGAAAGTGTTCCTG 59.736 52.381 0.00 0.00 32.28 3.86
189 190 2.833794 CGGAGTTGAAAGTGTTCCTGA 58.166 47.619 0.00 0.00 32.28 3.86
190 191 3.202906 CGGAGTTGAAAGTGTTCCTGAA 58.797 45.455 0.00 0.00 32.28 3.02
191 192 3.248602 CGGAGTTGAAAGTGTTCCTGAAG 59.751 47.826 0.00 0.00 32.28 3.02
192 193 3.003793 GGAGTTGAAAGTGTTCCTGAAGC 59.996 47.826 0.00 0.00 32.28 3.86
193 194 3.620488 AGTTGAAAGTGTTCCTGAAGCA 58.380 40.909 0.00 0.00 32.28 3.91
194 195 4.016444 AGTTGAAAGTGTTCCTGAAGCAA 58.984 39.130 0.00 0.00 32.28 3.91
195 196 4.462483 AGTTGAAAGTGTTCCTGAAGCAAA 59.538 37.500 0.00 0.00 32.28 3.68
196 197 5.047377 AGTTGAAAGTGTTCCTGAAGCAAAA 60.047 36.000 0.00 0.00 32.28 2.44
197 198 5.596836 TGAAAGTGTTCCTGAAGCAAAAT 57.403 34.783 0.00 0.00 32.28 1.82
198 199 5.976458 TGAAAGTGTTCCTGAAGCAAAATT 58.024 33.333 0.00 0.00 32.28 1.82
199 200 6.405538 TGAAAGTGTTCCTGAAGCAAAATTT 58.594 32.000 0.00 0.00 32.28 1.82
200 201 6.313411 TGAAAGTGTTCCTGAAGCAAAATTTG 59.687 34.615 0.57 0.57 32.28 2.32
201 202 4.696455 AGTGTTCCTGAAGCAAAATTTGG 58.304 39.130 7.89 0.00 0.00 3.28
202 203 4.405358 AGTGTTCCTGAAGCAAAATTTGGA 59.595 37.500 7.89 0.00 0.00 3.53
203 204 5.070847 AGTGTTCCTGAAGCAAAATTTGGAT 59.929 36.000 7.89 0.00 0.00 3.41
204 205 5.406477 GTGTTCCTGAAGCAAAATTTGGATC 59.594 40.000 7.89 0.00 0.00 3.36
205 206 5.070180 TGTTCCTGAAGCAAAATTTGGATCA 59.930 36.000 7.89 0.00 0.00 2.92
206 207 5.804944 TCCTGAAGCAAAATTTGGATCAA 57.195 34.783 7.89 0.00 0.00 2.57
207 208 6.363167 TCCTGAAGCAAAATTTGGATCAAT 57.637 33.333 7.89 0.00 0.00 2.57
208 209 6.771573 TCCTGAAGCAAAATTTGGATCAATT 58.228 32.000 7.89 0.00 0.00 2.32
209 210 7.225725 TCCTGAAGCAAAATTTGGATCAATTT 58.774 30.769 7.89 0.00 0.00 1.82
210 211 8.373981 TCCTGAAGCAAAATTTGGATCAATTTA 58.626 29.630 7.89 0.00 0.00 1.40
211 212 8.662141 CCTGAAGCAAAATTTGGATCAATTTAG 58.338 33.333 7.89 0.00 0.00 1.85
212 213 9.211485 CTGAAGCAAAATTTGGATCAATTTAGT 57.789 29.630 7.89 0.00 0.00 2.24
213 214 9.558396 TGAAGCAAAATTTGGATCAATTTAGTT 57.442 25.926 7.89 0.72 0.00 2.24
216 217 9.558396 AGCAAAATTTGGATCAATTTAGTTTCA 57.442 25.926 7.89 0.00 0.00 2.69
217 218 9.815936 GCAAAATTTGGATCAATTTAGTTTCAG 57.184 29.630 7.89 0.00 0.00 3.02
223 224 7.945033 TGGATCAATTTAGTTTCAGTTTTGC 57.055 32.000 0.00 0.00 0.00 3.68
224 225 7.725251 TGGATCAATTTAGTTTCAGTTTTGCT 58.275 30.769 0.00 0.00 0.00 3.91
225 226 8.855110 TGGATCAATTTAGTTTCAGTTTTGCTA 58.145 29.630 0.00 0.00 0.00 3.49
226 227 9.346725 GGATCAATTTAGTTTCAGTTTTGCTAG 57.653 33.333 0.00 0.00 0.00 3.42
227 228 9.899226 GATCAATTTAGTTTCAGTTTTGCTAGT 57.101 29.630 0.00 0.00 0.00 2.57
230 231 9.612620 CAATTTAGTTTCAGTTTTGCTAGTAGG 57.387 33.333 0.00 0.00 0.00 3.18
231 232 9.569122 AATTTAGTTTCAGTTTTGCTAGTAGGA 57.431 29.630 0.00 0.00 0.00 2.94
232 233 8.967664 TTTAGTTTCAGTTTTGCTAGTAGGAA 57.032 30.769 0.00 0.00 0.00 3.36
233 234 6.862711 AGTTTCAGTTTTGCTAGTAGGAAC 57.137 37.500 3.23 0.00 0.00 3.62
234 235 6.592870 AGTTTCAGTTTTGCTAGTAGGAACT 58.407 36.000 3.23 0.00 46.37 3.01
235 236 6.483640 AGTTTCAGTTTTGCTAGTAGGAACTG 59.516 38.462 22.04 22.04 45.17 3.16
236 237 5.546621 TCAGTTTTGCTAGTAGGAACTGT 57.453 39.130 24.53 0.00 44.51 3.55
237 238 6.659745 TCAGTTTTGCTAGTAGGAACTGTA 57.340 37.500 24.53 15.63 44.51 2.74
238 239 7.058023 TCAGTTTTGCTAGTAGGAACTGTAA 57.942 36.000 24.53 13.20 44.51 2.41
239 240 7.676947 TCAGTTTTGCTAGTAGGAACTGTAAT 58.323 34.615 24.53 0.00 44.51 1.89
240 241 8.809066 TCAGTTTTGCTAGTAGGAACTGTAATA 58.191 33.333 24.53 12.51 44.51 0.98
241 242 9.088512 CAGTTTTGCTAGTAGGAACTGTAATAG 57.911 37.037 20.81 5.13 41.21 1.73
242 243 9.032624 AGTTTTGCTAGTAGGAACTGTAATAGA 57.967 33.333 3.23 0.00 41.52 1.98
243 244 9.303537 GTTTTGCTAGTAGGAACTGTAATAGAG 57.696 37.037 3.23 0.00 41.52 2.43
244 245 8.591114 TTTGCTAGTAGGAACTGTAATAGAGT 57.409 34.615 3.23 0.00 41.52 3.24
245 246 8.591114 TTGCTAGTAGGAACTGTAATAGAGTT 57.409 34.615 2.23 2.23 41.52 3.01
246 247 9.690913 TTGCTAGTAGGAACTGTAATAGAGTTA 57.309 33.333 2.64 0.00 41.52 2.24
247 248 9.339850 TGCTAGTAGGAACTGTAATAGAGTTAG 57.660 37.037 2.64 0.00 41.52 2.34
248 249 8.291740 GCTAGTAGGAACTGTAATAGAGTTAGC 58.708 40.741 2.64 4.16 41.52 3.09
249 250 7.585579 AGTAGGAACTGTAATAGAGTTAGCC 57.414 40.000 2.64 1.90 41.52 3.93
250 251 5.873146 AGGAACTGTAATAGAGTTAGCCC 57.127 43.478 2.64 1.23 37.18 5.19
251 252 5.278061 AGGAACTGTAATAGAGTTAGCCCA 58.722 41.667 2.64 0.00 37.18 5.36
252 253 5.905913 AGGAACTGTAATAGAGTTAGCCCAT 59.094 40.000 2.64 0.00 37.18 4.00
253 254 6.387220 AGGAACTGTAATAGAGTTAGCCCATT 59.613 38.462 2.64 0.00 37.18 3.16
254 255 7.054751 GGAACTGTAATAGAGTTAGCCCATTT 58.945 38.462 2.64 0.00 33.71 2.32
255 256 8.208903 GGAACTGTAATAGAGTTAGCCCATTTA 58.791 37.037 2.64 0.00 33.71 1.40
256 257 9.780186 GAACTGTAATAGAGTTAGCCCATTTAT 57.220 33.333 2.64 0.00 33.71 1.40
260 261 9.720769 TGTAATAGAGTTAGCCCATTTATTAGC 57.279 33.333 0.00 0.00 0.00 3.09
261 262 9.720769 GTAATAGAGTTAGCCCATTTATTAGCA 57.279 33.333 0.00 0.00 0.00 3.49
263 264 8.854614 ATAGAGTTAGCCCATTTATTAGCAAG 57.145 34.615 0.00 0.00 0.00 4.01
264 265 6.663734 AGAGTTAGCCCATTTATTAGCAAGT 58.336 36.000 0.00 0.00 0.00 3.16
265 266 7.802117 AGAGTTAGCCCATTTATTAGCAAGTA 58.198 34.615 0.00 0.00 0.00 2.24
266 267 8.440771 AGAGTTAGCCCATTTATTAGCAAGTAT 58.559 33.333 0.00 0.00 0.00 2.12
267 268 8.396272 AGTTAGCCCATTTATTAGCAAGTATG 57.604 34.615 0.00 0.00 0.00 2.39
268 269 8.217799 AGTTAGCCCATTTATTAGCAAGTATGA 58.782 33.333 0.00 0.00 0.00 2.15
269 270 8.507249 GTTAGCCCATTTATTAGCAAGTATGAG 58.493 37.037 0.00 0.00 0.00 2.90
270 271 6.841601 AGCCCATTTATTAGCAAGTATGAGA 58.158 36.000 0.00 0.00 0.00 3.27
271 272 7.465116 AGCCCATTTATTAGCAAGTATGAGAT 58.535 34.615 0.00 0.00 0.00 2.75
272 273 7.392673 AGCCCATTTATTAGCAAGTATGAGATG 59.607 37.037 0.00 0.00 0.00 2.90
273 274 7.175641 GCCCATTTATTAGCAAGTATGAGATGT 59.824 37.037 0.00 0.00 0.00 3.06
274 275 9.725019 CCCATTTATTAGCAAGTATGAGATGTA 57.275 33.333 0.00 0.00 0.00 2.29
279 280 9.710900 TTATTAGCAAGTATGAGATGTACCATG 57.289 33.333 0.00 0.00 0.00 3.66
280 281 5.876651 AGCAAGTATGAGATGTACCATGA 57.123 39.130 0.00 0.00 0.00 3.07
281 282 6.239217 AGCAAGTATGAGATGTACCATGAA 57.761 37.500 0.00 0.00 0.00 2.57
282 283 6.835174 AGCAAGTATGAGATGTACCATGAAT 58.165 36.000 0.00 0.00 0.00 2.57
283 284 7.285566 AGCAAGTATGAGATGTACCATGAATT 58.714 34.615 0.00 0.00 0.00 2.17
284 285 7.776969 AGCAAGTATGAGATGTACCATGAATTT 59.223 33.333 0.00 0.00 0.00 1.82
285 286 7.859377 GCAAGTATGAGATGTACCATGAATTTG 59.141 37.037 0.00 0.00 0.00 2.32
286 287 8.896744 CAAGTATGAGATGTACCATGAATTTGT 58.103 33.333 0.00 0.00 0.00 2.83
287 288 9.466497 AAGTATGAGATGTACCATGAATTTGTT 57.534 29.630 0.00 0.00 0.00 2.83
288 289 9.466497 AGTATGAGATGTACCATGAATTTGTTT 57.534 29.630 0.00 0.00 0.00 2.83
289 290 9.507280 GTATGAGATGTACCATGAATTTGTTTG 57.493 33.333 0.00 0.00 0.00 2.93
290 291 7.757941 TGAGATGTACCATGAATTTGTTTGA 57.242 32.000 0.00 0.00 0.00 2.69
291 292 8.175925 TGAGATGTACCATGAATTTGTTTGAA 57.824 30.769 0.00 0.00 0.00 2.69
292 293 8.298854 TGAGATGTACCATGAATTTGTTTGAAG 58.701 33.333 0.00 0.00 0.00 3.02
293 294 8.181904 AGATGTACCATGAATTTGTTTGAAGT 57.818 30.769 0.00 0.00 0.00 3.01
294 295 8.084073 AGATGTACCATGAATTTGTTTGAAGTG 58.916 33.333 0.00 0.00 0.00 3.16
295 296 7.106439 TGTACCATGAATTTGTTTGAAGTGT 57.894 32.000 0.00 0.00 0.00 3.55
296 297 7.551585 TGTACCATGAATTTGTTTGAAGTGTT 58.448 30.769 0.00 0.00 0.00 3.32
297 298 8.687242 TGTACCATGAATTTGTTTGAAGTGTTA 58.313 29.630 0.00 0.00 0.00 2.41
298 299 9.522804 GTACCATGAATTTGTTTGAAGTGTTAA 57.477 29.630 0.00 0.00 0.00 2.01
300 301 8.878769 ACCATGAATTTGTTTGAAGTGTTAAAC 58.121 29.630 0.00 0.00 37.32 2.01
301 302 8.877779 CCATGAATTTGTTTGAAGTGTTAAACA 58.122 29.630 0.00 0.00 42.96 2.83
319 320 9.521841 TGTTAAACACAAACAATATATCCCTGA 57.478 29.630 0.00 0.00 34.04 3.86
322 323 8.593945 AAACACAAACAATATATCCCTGATGT 57.406 30.769 0.00 0.00 0.00 3.06
323 324 9.693739 AAACACAAACAATATATCCCTGATGTA 57.306 29.630 0.00 0.00 0.00 2.29
324 325 8.677148 ACACAAACAATATATCCCTGATGTAC 57.323 34.615 0.00 0.00 0.00 2.90
325 326 8.271458 ACACAAACAATATATCCCTGATGTACA 58.729 33.333 0.00 0.00 0.00 2.90
326 327 9.119418 CACAAACAATATATCCCTGATGTACAA 57.881 33.333 0.00 0.00 0.00 2.41
327 328 9.342308 ACAAACAATATATCCCTGATGTACAAG 57.658 33.333 0.00 0.00 0.00 3.16
328 329 9.559732 CAAACAATATATCCCTGATGTACAAGA 57.440 33.333 0.00 0.00 0.00 3.02
333 334 9.745018 AATATATCCCTGATGTACAAGATTTGG 57.255 33.333 0.00 0.00 34.12 3.28
334 335 4.927267 TCCCTGATGTACAAGATTTGGT 57.073 40.909 0.00 0.00 34.12 3.67
335 336 4.588899 TCCCTGATGTACAAGATTTGGTG 58.411 43.478 0.00 0.00 34.12 4.17
336 337 3.696051 CCCTGATGTACAAGATTTGGTGG 59.304 47.826 0.00 0.00 34.12 4.61
337 338 3.129287 CCTGATGTACAAGATTTGGTGGC 59.871 47.826 0.00 0.00 34.12 5.01
338 339 2.746904 TGATGTACAAGATTTGGTGGCG 59.253 45.455 0.00 0.00 34.12 5.69
339 340 2.552599 TGTACAAGATTTGGTGGCGA 57.447 45.000 0.00 0.00 34.12 5.54
340 341 2.422597 TGTACAAGATTTGGTGGCGAG 58.577 47.619 0.00 0.00 34.12 5.03
341 342 1.130561 GTACAAGATTTGGTGGCGAGC 59.869 52.381 0.00 0.00 34.12 5.03
342 343 1.135315 CAAGATTTGGTGGCGAGCG 59.865 57.895 0.00 0.00 0.00 5.03
343 344 1.003839 AAGATTTGGTGGCGAGCGA 60.004 52.632 0.00 0.00 0.00 4.93
344 345 1.021390 AAGATTTGGTGGCGAGCGAG 61.021 55.000 0.00 0.00 0.00 5.03
345 346 1.741770 GATTTGGTGGCGAGCGAGT 60.742 57.895 0.00 0.00 0.00 4.18
346 347 1.696832 GATTTGGTGGCGAGCGAGTC 61.697 60.000 0.00 0.00 0.00 3.36
347 348 2.449031 ATTTGGTGGCGAGCGAGTCA 62.449 55.000 0.00 0.00 0.00 3.41
348 349 3.573772 TTGGTGGCGAGCGAGTCAG 62.574 63.158 0.00 0.00 0.00 3.51
356 357 4.683432 AGCGAGTCAGCTTTGTCC 57.317 55.556 4.01 0.00 46.80 4.02
357 358 1.748403 AGCGAGTCAGCTTTGTCCA 59.252 52.632 4.01 0.00 46.80 4.02
358 359 0.601311 AGCGAGTCAGCTTTGTCCAC 60.601 55.000 4.01 0.00 46.80 4.02
359 360 0.880278 GCGAGTCAGCTTTGTCCACA 60.880 55.000 0.00 0.00 0.00 4.17
360 361 1.143305 CGAGTCAGCTTTGTCCACAG 58.857 55.000 0.00 0.00 0.00 3.66
361 362 1.269778 CGAGTCAGCTTTGTCCACAGA 60.270 52.381 0.00 0.00 0.00 3.41
362 363 2.411904 GAGTCAGCTTTGTCCACAGAG 58.588 52.381 0.00 0.00 0.00 3.35
363 364 1.765314 AGTCAGCTTTGTCCACAGAGT 59.235 47.619 0.00 0.00 31.41 3.24
364 365 2.965831 AGTCAGCTTTGTCCACAGAGTA 59.034 45.455 0.00 0.00 31.41 2.59
365 366 3.388024 AGTCAGCTTTGTCCACAGAGTAA 59.612 43.478 0.00 0.00 31.41 2.24
366 367 4.040952 AGTCAGCTTTGTCCACAGAGTAAT 59.959 41.667 0.00 0.00 31.41 1.89
367 368 4.153117 GTCAGCTTTGTCCACAGAGTAATG 59.847 45.833 0.00 0.00 31.41 1.90
368 369 3.077359 AGCTTTGTCCACAGAGTAATGC 58.923 45.455 0.00 0.00 31.41 3.56
369 370 2.813754 GCTTTGTCCACAGAGTAATGCA 59.186 45.455 0.00 0.00 31.41 3.96
370 371 3.253188 GCTTTGTCCACAGAGTAATGCAA 59.747 43.478 0.00 0.00 31.41 4.08
371 372 4.082571 GCTTTGTCCACAGAGTAATGCAAT 60.083 41.667 0.00 0.00 31.41 3.56
372 373 5.627499 TTTGTCCACAGAGTAATGCAATC 57.373 39.130 0.00 0.00 0.00 2.67
972 973 3.137459 AGAGAGGAGACCAGCGCG 61.137 66.667 0.00 0.00 0.00 6.86
973 974 4.200283 GAGAGGAGACCAGCGCGG 62.200 72.222 8.83 15.25 42.50 6.46
978 979 3.127533 GAGACCAGCGCGGCAAAT 61.128 61.111 16.48 0.00 39.03 2.32
979 980 2.672996 AGACCAGCGCGGCAAATT 60.673 55.556 16.48 0.00 39.03 1.82
980 981 2.200170 GAGACCAGCGCGGCAAATTT 62.200 55.000 16.48 0.00 39.03 1.82
981 982 1.372872 GACCAGCGCGGCAAATTTT 60.373 52.632 16.48 0.00 39.03 1.82
982 983 1.344226 GACCAGCGCGGCAAATTTTC 61.344 55.000 16.48 3.34 39.03 2.29
983 984 2.094066 CCAGCGCGGCAAATTTTCC 61.094 57.895 8.83 0.00 0.00 3.13
984 985 1.080569 CAGCGCGGCAAATTTTCCT 60.081 52.632 8.83 0.00 0.00 3.36
985 986 1.072666 CAGCGCGGCAAATTTTCCTC 61.073 55.000 8.83 0.00 0.00 3.71
986 987 1.805539 GCGCGGCAAATTTTCCTCC 60.806 57.895 8.83 0.00 0.00 4.30
987 988 1.514014 CGCGGCAAATTTTCCTCCG 60.514 57.895 5.31 8.91 42.68 4.63
988 989 1.153842 GCGGCAAATTTTCCTCCGG 60.154 57.895 15.34 0.00 40.37 5.14
989 990 1.873270 GCGGCAAATTTTCCTCCGGT 61.873 55.000 0.00 0.00 40.37 5.28
990 991 0.601057 CGGCAAATTTTCCTCCGGTT 59.399 50.000 0.00 0.00 36.73 4.44
991 992 1.668628 CGGCAAATTTTCCTCCGGTTG 60.669 52.381 0.00 0.00 36.73 3.77
992 993 1.428448 GCAAATTTTCCTCCGGTTGC 58.572 50.000 0.00 3.57 35.13 4.17
993 994 1.939381 GCAAATTTTCCTCCGGTTGCC 60.939 52.381 10.20 0.00 36.27 4.52
994 995 1.342819 CAAATTTTCCTCCGGTTGCCA 59.657 47.619 0.00 0.00 0.00 4.92
995 996 0.966179 AATTTTCCTCCGGTTGCCAC 59.034 50.000 0.00 0.00 0.00 5.01
996 997 0.112412 ATTTTCCTCCGGTTGCCACT 59.888 50.000 0.00 0.00 0.00 4.00
997 998 0.536460 TTTTCCTCCGGTTGCCACTC 60.536 55.000 0.00 0.00 0.00 3.51
998 999 1.415672 TTTCCTCCGGTTGCCACTCT 61.416 55.000 0.00 0.00 0.00 3.24
999 1000 1.415672 TTCCTCCGGTTGCCACTCTT 61.416 55.000 0.00 0.00 0.00 2.85
1000 1001 0.543410 TCCTCCGGTTGCCACTCTTA 60.543 55.000 0.00 0.00 0.00 2.10
1001 1002 0.541863 CCTCCGGTTGCCACTCTTAT 59.458 55.000 0.00 0.00 0.00 1.73
1002 1003 1.656652 CTCCGGTTGCCACTCTTATG 58.343 55.000 0.00 0.00 0.00 1.90
1003 1004 0.981183 TCCGGTTGCCACTCTTATGT 59.019 50.000 0.00 0.00 0.00 2.29
1004 1005 1.349688 TCCGGTTGCCACTCTTATGTT 59.650 47.619 0.00 0.00 0.00 2.71
1005 1006 1.737793 CCGGTTGCCACTCTTATGTTC 59.262 52.381 0.00 0.00 0.00 3.18
1006 1007 1.737793 CGGTTGCCACTCTTATGTTCC 59.262 52.381 0.00 0.00 0.00 3.62
1007 1008 2.790433 GGTTGCCACTCTTATGTTCCA 58.210 47.619 0.00 0.00 0.00 3.53
1017 1018 1.942657 CTTATGTTCCAGATGCACCCG 59.057 52.381 0.00 0.00 0.00 5.28
1018 1019 0.463654 TATGTTCCAGATGCACCCGC 60.464 55.000 0.00 0.00 39.24 6.13
1026 1027 4.115199 ATGCACCCGCTCCCCTTC 62.115 66.667 0.00 0.00 39.64 3.46
1071 1072 3.443925 CTCCTCTCGTCCTGCGCA 61.444 66.667 10.98 10.98 41.07 6.09
1542 1543 3.966026 GAAGAGGGACCGCGTCACG 62.966 68.421 4.92 0.00 41.43 4.35
1565 1566 0.107214 AGCACCATGGTTACCGGATG 60.107 55.000 16.84 2.04 0.00 3.51
1744 1745 3.310727 CATGCTATGCGGATGGACA 57.689 52.632 4.00 2.20 37.76 4.02
1767 1768 9.545071 GACATTGTCATCTCAACAAGCCTTGTT 62.545 40.741 16.89 16.89 42.24 2.83
1779 1780 1.739466 AGCCTTGTTGACATGTATGCG 59.261 47.619 0.00 0.00 0.00 4.73
1786 1787 6.037062 CCTTGTTGACATGTATGCGAAGAATA 59.963 38.462 0.00 0.00 0.00 1.75
1854 1855 3.545481 GATGTGTCGTGGAGCGCG 61.545 66.667 0.00 0.00 41.07 6.86
1902 1903 0.330604 ATGCAGATGAGGCACTTGGT 59.669 50.000 0.00 0.00 45.23 3.67
1938 1939 0.116143 AGGTCTCTGGTCTTCAGCCT 59.884 55.000 0.00 0.00 43.06 4.58
1977 1978 4.286297 TGGTGCACTATTAGCTTGTTCT 57.714 40.909 17.98 0.00 0.00 3.01
2045 2046 2.202797 GCGGCTTGAGCTCGATCA 60.203 61.111 9.64 0.00 41.70 2.92
2271 2272 1.674359 TTGCTTCTCTTTTGTCGGCA 58.326 45.000 0.00 0.00 0.00 5.69
2480 2481 1.634702 GCTCTACTTTCAGGCTGTCG 58.365 55.000 15.27 6.64 0.00 4.35
2584 2585 3.410631 TGGTCTCAAATCTTTACGCCA 57.589 42.857 0.00 0.00 0.00 5.69
3000 3001 3.461773 AGGGAGATCGTGGTGCGG 61.462 66.667 0.00 0.00 41.72 5.69
3003 3004 2.797278 GGAGATCGTGGTGCGGGAT 61.797 63.158 0.00 0.00 41.72 3.85
3132 3139 1.405105 TCAAATCTTTATGCCGCTGCC 59.595 47.619 0.00 0.00 36.33 4.85
3139 3146 1.383456 TTATGCCGCTGCCATGAACC 61.383 55.000 0.00 0.00 36.33 3.62
3142 3149 4.776322 CCGCTGCCATGAACCGGA 62.776 66.667 9.46 0.00 41.34 5.14
3149 3156 0.608035 GCCATGAACCGGAACAAGGA 60.608 55.000 22.87 0.00 0.00 3.36
3183 3190 0.545309 TGAAGCCTGGGTGTAGCTCT 60.545 55.000 0.00 0.00 35.30 4.09
3192 3199 4.704540 CCTGGGTGTAGCTCTATAGAGATG 59.295 50.000 30.06 12.10 44.74 2.90
3228 3236 2.168521 ACTGCGTGAACCAGCATATAGT 59.831 45.455 0.00 0.00 42.95 2.12
3299 3307 3.643237 TCAGATTTCATACTCCCTCCGT 58.357 45.455 0.00 0.00 0.00 4.69
3300 3308 3.637229 TCAGATTTCATACTCCCTCCGTC 59.363 47.826 0.00 0.00 0.00 4.79
3301 3309 2.966516 AGATTTCATACTCCCTCCGTCC 59.033 50.000 0.00 0.00 0.00 4.79
3302 3310 1.492764 TTTCATACTCCCTCCGTCCC 58.507 55.000 0.00 0.00 0.00 4.46
3303 3311 0.337082 TTCATACTCCCTCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
3305 3313 1.457831 ATACTCCCTCCGTCCCAGC 60.458 63.158 0.00 0.00 0.00 4.85
3308 3316 4.458829 TCCCTCCGTCCCAGCGAT 62.459 66.667 0.00 0.00 0.00 4.58
3310 3318 2.728817 CCTCCGTCCCAGCGATAC 59.271 66.667 0.00 0.00 0.00 2.24
3311 3319 2.125326 CCTCCGTCCCAGCGATACA 61.125 63.158 0.00 0.00 0.00 2.29
3312 3320 1.464376 CCTCCGTCCCAGCGATACAT 61.464 60.000 0.00 0.00 0.00 2.29
3313 3321 0.389391 CTCCGTCCCAGCGATACATT 59.611 55.000 0.00 0.00 0.00 2.71
3314 3322 0.387929 TCCGTCCCAGCGATACATTC 59.612 55.000 0.00 0.00 0.00 2.67
3325 3333 3.206271 CGATACATTCGTTTGAGCGAC 57.794 47.619 0.00 0.00 43.01 5.19
3326 3334 2.596862 CGATACATTCGTTTGAGCGACA 59.403 45.455 0.00 0.00 43.01 4.35
3327 3335 3.060230 CGATACATTCGTTTGAGCGACAA 59.940 43.478 0.00 0.00 43.01 3.18
3328 3336 4.259810 CGATACATTCGTTTGAGCGACAAT 60.260 41.667 0.00 0.00 43.01 2.71
3329 3337 3.896648 ACATTCGTTTGAGCGACAATT 57.103 38.095 0.00 0.00 40.85 2.32
3330 3338 6.507299 CGATACATTCGTTTGAGCGACAATTA 60.507 38.462 0.00 0.00 43.01 1.40
3331 3339 5.351233 ACATTCGTTTGAGCGACAATTAA 57.649 34.783 0.00 0.00 40.85 1.40
3332 3340 5.938322 ACATTCGTTTGAGCGACAATTAAT 58.062 33.333 0.00 0.00 40.85 1.40
3333 3341 7.067532 ACATTCGTTTGAGCGACAATTAATA 57.932 32.000 0.00 0.00 40.85 0.98
3334 3342 7.693952 ACATTCGTTTGAGCGACAATTAATAT 58.306 30.769 0.00 0.00 40.85 1.28
3335 3343 7.639850 ACATTCGTTTGAGCGACAATTAATATG 59.360 33.333 0.00 0.00 40.85 1.78
3336 3344 6.043327 TCGTTTGAGCGACAATTAATATGG 57.957 37.500 0.00 0.00 38.36 2.74
3337 3345 5.007234 TCGTTTGAGCGACAATTAATATGGG 59.993 40.000 0.00 0.00 38.36 4.00
3338 3346 5.519722 GTTTGAGCGACAATTAATATGGGG 58.480 41.667 0.00 0.00 38.36 4.96
3339 3347 3.146066 TGAGCGACAATTAATATGGGGC 58.854 45.455 0.00 0.00 0.00 5.80
3340 3348 3.146066 GAGCGACAATTAATATGGGGCA 58.854 45.455 0.00 0.00 0.00 5.36
3341 3349 3.149196 AGCGACAATTAATATGGGGCAG 58.851 45.455 0.00 0.00 0.00 4.85
3342 3350 3.146066 GCGACAATTAATATGGGGCAGA 58.854 45.455 0.00 0.00 0.00 4.26
3354 3362 3.344535 TGGGGCAGAGGAGTATATGAA 57.655 47.619 0.00 0.00 0.00 2.57
3412 3422 5.837979 AGGCTCTAGATCTTTCATGCTTCTA 59.162 40.000 0.00 0.00 0.00 2.10
3414 3424 6.423604 GGCTCTAGATCTTTCATGCTTCTAAC 59.576 42.308 0.00 0.00 0.00 2.34
3494 3504 4.391830 TCATTGTCCGCTGAAATAAGTGTC 59.608 41.667 0.00 0.00 0.00 3.67
3517 3527 1.299541 CGAGTGCAGTTCCACAAGTT 58.700 50.000 0.00 0.00 38.18 2.66
3557 3610 1.165270 CGTCACCCCTGTTGAAATCC 58.835 55.000 0.00 0.00 0.00 3.01
3646 3699 1.068333 GTTTACGGCACCACGACTCTA 60.068 52.381 0.00 0.00 37.61 2.43
3647 3700 0.523072 TTACGGCACCACGACTCTAC 59.477 55.000 0.00 0.00 37.61 2.59
3648 3701 1.308069 TACGGCACCACGACTCTACC 61.308 60.000 0.00 0.00 37.61 3.18
3655 3708 1.211969 CACGACTCTACCACCACCG 59.788 63.158 0.00 0.00 0.00 4.94
3661 3714 2.107041 CTCTACCACCACCGCCAACA 62.107 60.000 0.00 0.00 0.00 3.33
3666 3719 4.579384 ACCACCGCCAACACCAGG 62.579 66.667 0.00 0.00 0.00 4.45
3738 3791 2.502080 CGCACCGTCGTCAGTCTC 60.502 66.667 0.00 0.00 0.00 3.36
3873 3926 4.373116 GCGTCTCTTGCCGTGGGA 62.373 66.667 0.00 0.00 0.00 4.37
3913 3973 1.289276 AAGTTTTGCTTTGCCTTGCG 58.711 45.000 0.00 0.00 32.57 4.85
3947 4017 2.098680 GCTCGTCTCGTGGACTCG 59.901 66.667 8.91 0.00 42.44 4.18
3952 4022 1.573436 GTCTCGTGGACTCGTCGTT 59.427 57.895 0.00 0.00 41.46 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.676151 CTCAAGCCTTCCTGCTCCAC 60.676 60.000 0.00 0.00 41.80 4.02
2 3 0.326264 TTCTCAAGCCTTCCTGCTCC 59.674 55.000 0.00 0.00 41.80 4.70
4 5 1.914798 AGATTCTCAAGCCTTCCTGCT 59.085 47.619 0.00 0.00 45.43 4.24
5 6 2.416680 AGATTCTCAAGCCTTCCTGC 57.583 50.000 0.00 0.00 0.00 4.85
6 7 8.688747 ATTAATTAGATTCTCAAGCCTTCCTG 57.311 34.615 0.00 0.00 0.00 3.86
7 8 7.941790 GGATTAATTAGATTCTCAAGCCTTCCT 59.058 37.037 0.00 0.00 0.00 3.36
8 9 7.721399 TGGATTAATTAGATTCTCAAGCCTTCC 59.279 37.037 0.00 0.00 0.00 3.46
9 10 8.563732 GTGGATTAATTAGATTCTCAAGCCTTC 58.436 37.037 0.00 0.00 0.00 3.46
10 11 8.277918 AGTGGATTAATTAGATTCTCAAGCCTT 58.722 33.333 0.00 0.00 0.00 4.35
11 12 7.810260 AGTGGATTAATTAGATTCTCAAGCCT 58.190 34.615 0.00 0.00 0.00 4.58
12 13 8.457238 AAGTGGATTAATTAGATTCTCAAGCC 57.543 34.615 0.00 0.00 0.00 4.35
13 14 9.113838 TGAAGTGGATTAATTAGATTCTCAAGC 57.886 33.333 0.00 0.00 0.00 4.01
16 17 9.060347 GCATGAAGTGGATTAATTAGATTCTCA 57.940 33.333 0.00 0.00 0.00 3.27
17 18 9.282569 AGCATGAAGTGGATTAATTAGATTCTC 57.717 33.333 0.00 0.00 0.00 2.87
18 19 9.064706 CAGCATGAAGTGGATTAATTAGATTCT 57.935 33.333 0.00 0.00 39.69 2.40
19 20 9.060347 TCAGCATGAAGTGGATTAATTAGATTC 57.940 33.333 0.00 0.00 45.97 2.52
20 21 8.985315 TCAGCATGAAGTGGATTAATTAGATT 57.015 30.769 0.00 0.00 45.97 2.40
38 39 5.465390 CCCATGAAGCAAATATTTCAGCATG 59.535 40.000 11.74 14.10 36.81 4.06
39 40 5.607477 CCCATGAAGCAAATATTTCAGCAT 58.393 37.500 11.74 1.52 36.81 3.79
40 41 4.681244 GCCCATGAAGCAAATATTTCAGCA 60.681 41.667 11.74 3.54 36.81 4.41
41 42 3.805971 GCCCATGAAGCAAATATTTCAGC 59.194 43.478 0.00 0.00 36.81 4.26
42 43 4.141892 TGGCCCATGAAGCAAATATTTCAG 60.142 41.667 0.00 0.00 36.81 3.02
43 44 3.773667 TGGCCCATGAAGCAAATATTTCA 59.226 39.130 0.00 0.00 37.68 2.69
44 45 4.405116 TGGCCCATGAAGCAAATATTTC 57.595 40.909 0.00 0.00 0.00 2.17
45 46 4.773013 CTTGGCCCATGAAGCAAATATTT 58.227 39.130 0.00 0.00 0.00 1.40
46 47 3.432608 GCTTGGCCCATGAAGCAAATATT 60.433 43.478 18.11 0.00 43.44 1.28
47 48 2.103601 GCTTGGCCCATGAAGCAAATAT 59.896 45.455 18.11 0.00 43.44 1.28
48 49 1.481772 GCTTGGCCCATGAAGCAAATA 59.518 47.619 18.11 0.00 43.44 1.40
49 50 0.251073 GCTTGGCCCATGAAGCAAAT 59.749 50.000 18.11 0.00 43.44 2.32
50 51 0.832983 AGCTTGGCCCATGAAGCAAA 60.833 50.000 23.21 8.13 45.88 3.68
51 52 1.228956 AGCTTGGCCCATGAAGCAA 60.229 52.632 23.21 0.64 45.88 3.91
52 53 1.980232 CAGCTTGGCCCATGAAGCA 60.980 57.895 23.21 0.00 45.88 3.91
53 54 2.718073 CCAGCTTGGCCCATGAAGC 61.718 63.158 15.88 15.88 44.16 3.86
54 55 3.612251 CCAGCTTGGCCCATGAAG 58.388 61.111 0.00 0.00 0.00 3.02
63 64 0.955428 TTTAGACGCAGCCAGCTTGG 60.955 55.000 0.00 0.00 42.61 3.61
64 65 0.445436 CTTTAGACGCAGCCAGCTTG 59.555 55.000 0.00 0.00 42.61 4.01
65 66 0.674895 CCTTTAGACGCAGCCAGCTT 60.675 55.000 0.00 0.00 42.61 3.74
66 67 1.078848 CCTTTAGACGCAGCCAGCT 60.079 57.895 0.00 0.00 42.61 4.24
67 68 0.673644 TTCCTTTAGACGCAGCCAGC 60.674 55.000 0.00 0.00 40.87 4.85
68 69 1.936547 GATTCCTTTAGACGCAGCCAG 59.063 52.381 0.00 0.00 0.00 4.85
69 70 1.277842 TGATTCCTTTAGACGCAGCCA 59.722 47.619 0.00 0.00 0.00 4.75
70 71 1.666189 GTGATTCCTTTAGACGCAGCC 59.334 52.381 0.00 0.00 0.00 4.85
71 72 2.622436 AGTGATTCCTTTAGACGCAGC 58.378 47.619 0.00 0.00 0.00 5.25
72 73 8.085296 AGATAATAGTGATTCCTTTAGACGCAG 58.915 37.037 0.00 0.00 0.00 5.18
73 74 7.867909 CAGATAATAGTGATTCCTTTAGACGCA 59.132 37.037 0.00 0.00 0.00 5.24
74 75 7.148722 GCAGATAATAGTGATTCCTTTAGACGC 60.149 40.741 0.00 0.00 0.00 5.19
75 76 8.085296 AGCAGATAATAGTGATTCCTTTAGACG 58.915 37.037 0.00 0.00 0.00 4.18
76 77 9.771534 AAGCAGATAATAGTGATTCCTTTAGAC 57.228 33.333 0.00 0.00 0.00 2.59
77 78 9.988815 GAAGCAGATAATAGTGATTCCTTTAGA 57.011 33.333 0.00 0.00 33.83 2.10
78 79 8.920665 CGAAGCAGATAATAGTGATTCCTTTAG 58.079 37.037 0.00 0.00 36.02 1.85
79 80 8.638873 TCGAAGCAGATAATAGTGATTCCTTTA 58.361 33.333 0.00 0.00 36.02 1.85
80 81 7.500992 TCGAAGCAGATAATAGTGATTCCTTT 58.499 34.615 0.00 0.00 36.02 3.11
81 82 7.055667 TCGAAGCAGATAATAGTGATTCCTT 57.944 36.000 0.00 0.00 36.02 3.36
82 83 6.656632 TCGAAGCAGATAATAGTGATTCCT 57.343 37.500 0.00 0.00 36.02 3.36
83 84 7.439655 AGTTTCGAAGCAGATAATAGTGATTCC 59.560 37.037 14.70 0.00 36.02 3.01
84 85 8.272176 CAGTTTCGAAGCAGATAATAGTGATTC 58.728 37.037 14.70 0.00 36.06 2.52
85 86 7.981789 TCAGTTTCGAAGCAGATAATAGTGATT 59.018 33.333 14.70 0.00 0.00 2.57
86 87 7.436673 GTCAGTTTCGAAGCAGATAATAGTGAT 59.563 37.037 14.70 0.00 0.00 3.06
87 88 6.752351 GTCAGTTTCGAAGCAGATAATAGTGA 59.248 38.462 14.70 4.64 0.00 3.41
88 89 6.754209 AGTCAGTTTCGAAGCAGATAATAGTG 59.246 38.462 14.70 2.30 0.00 2.74
89 90 6.868622 AGTCAGTTTCGAAGCAGATAATAGT 58.131 36.000 14.70 0.00 0.00 2.12
90 91 6.419413 GGAGTCAGTTTCGAAGCAGATAATAG 59.581 42.308 14.70 0.00 0.00 1.73
91 92 6.127451 TGGAGTCAGTTTCGAAGCAGATAATA 60.127 38.462 14.70 0.00 0.00 0.98
92 93 5.112686 GGAGTCAGTTTCGAAGCAGATAAT 58.887 41.667 14.70 2.64 0.00 1.28
93 94 4.021456 TGGAGTCAGTTTCGAAGCAGATAA 60.021 41.667 14.70 0.00 0.00 1.75
94 95 3.509967 TGGAGTCAGTTTCGAAGCAGATA 59.490 43.478 14.70 0.00 0.00 1.98
95 96 2.300152 TGGAGTCAGTTTCGAAGCAGAT 59.700 45.455 14.70 2.54 0.00 2.90
96 97 1.686587 TGGAGTCAGTTTCGAAGCAGA 59.313 47.619 14.70 8.88 0.00 4.26
97 98 2.154854 TGGAGTCAGTTTCGAAGCAG 57.845 50.000 14.70 6.42 0.00 4.24
98 99 2.224281 ACATGGAGTCAGTTTCGAAGCA 60.224 45.455 14.70 0.00 0.00 3.91
99 100 2.417719 ACATGGAGTCAGTTTCGAAGC 58.582 47.619 3.49 3.49 0.00 3.86
100 101 3.364366 GCAACATGGAGTCAGTTTCGAAG 60.364 47.826 0.00 0.00 0.00 3.79
101 102 2.548057 GCAACATGGAGTCAGTTTCGAA 59.452 45.455 0.00 0.00 0.00 3.71
102 103 2.143122 GCAACATGGAGTCAGTTTCGA 58.857 47.619 0.00 0.00 0.00 3.71
103 104 2.146342 AGCAACATGGAGTCAGTTTCG 58.854 47.619 0.00 0.00 0.00 3.46
104 105 5.689383 TTTAGCAACATGGAGTCAGTTTC 57.311 39.130 0.00 0.00 0.00 2.78
105 106 5.359576 TGTTTTAGCAACATGGAGTCAGTTT 59.640 36.000 0.00 0.00 0.00 2.66
106 107 4.887071 TGTTTTAGCAACATGGAGTCAGTT 59.113 37.500 0.00 0.00 0.00 3.16
107 108 4.460263 TGTTTTAGCAACATGGAGTCAGT 58.540 39.130 0.00 0.00 0.00 3.41
108 109 5.437289 TTGTTTTAGCAACATGGAGTCAG 57.563 39.130 0.00 0.00 0.00 3.51
109 110 4.278170 CCTTGTTTTAGCAACATGGAGTCA 59.722 41.667 12.48 0.00 43.94 3.41
110 111 4.518970 TCCTTGTTTTAGCAACATGGAGTC 59.481 41.667 15.14 0.00 44.48 3.36
111 112 4.469657 TCCTTGTTTTAGCAACATGGAGT 58.530 39.130 15.14 0.00 44.48 3.85
114 115 5.389859 TCATCCTTGTTTTAGCAACATGG 57.610 39.130 11.88 11.88 43.11 3.66
115 116 4.860907 GCTCATCCTTGTTTTAGCAACATG 59.139 41.667 0.00 0.00 0.00 3.21
116 117 4.523943 TGCTCATCCTTGTTTTAGCAACAT 59.476 37.500 0.00 0.00 37.05 2.71
117 118 3.888323 TGCTCATCCTTGTTTTAGCAACA 59.112 39.130 0.00 0.00 37.05 3.33
118 119 4.503741 TGCTCATCCTTGTTTTAGCAAC 57.496 40.909 0.00 0.00 37.05 4.17
119 120 4.826733 TCTTGCTCATCCTTGTTTTAGCAA 59.173 37.500 7.28 7.28 44.98 3.91
120 121 4.397420 TCTTGCTCATCCTTGTTTTAGCA 58.603 39.130 0.00 0.00 38.14 3.49
121 122 5.573337 ATCTTGCTCATCCTTGTTTTAGC 57.427 39.130 0.00 0.00 0.00 3.09
122 123 5.582269 TCGATCTTGCTCATCCTTGTTTTAG 59.418 40.000 0.00 0.00 0.00 1.85
123 124 5.487433 TCGATCTTGCTCATCCTTGTTTTA 58.513 37.500 0.00 0.00 0.00 1.52
124 125 4.326826 TCGATCTTGCTCATCCTTGTTTT 58.673 39.130 0.00 0.00 0.00 2.43
125 126 3.942829 TCGATCTTGCTCATCCTTGTTT 58.057 40.909 0.00 0.00 0.00 2.83
126 127 3.616956 TCGATCTTGCTCATCCTTGTT 57.383 42.857 0.00 0.00 0.00 2.83
127 128 3.133542 TGATCGATCTTGCTCATCCTTGT 59.866 43.478 25.02 0.00 0.00 3.16
128 129 3.725490 TGATCGATCTTGCTCATCCTTG 58.275 45.455 25.02 0.00 0.00 3.61
129 130 3.387374 ACTGATCGATCTTGCTCATCCTT 59.613 43.478 25.02 0.00 0.00 3.36
130 131 2.964464 ACTGATCGATCTTGCTCATCCT 59.036 45.455 25.02 0.00 0.00 3.24
131 132 3.058450 CACTGATCGATCTTGCTCATCC 58.942 50.000 25.02 0.00 0.00 3.51
132 133 3.058450 CCACTGATCGATCTTGCTCATC 58.942 50.000 25.02 0.00 0.00 2.92
133 134 2.433604 ACCACTGATCGATCTTGCTCAT 59.566 45.455 25.02 3.54 0.00 2.90
134 135 1.827344 ACCACTGATCGATCTTGCTCA 59.173 47.619 25.02 5.48 0.00 4.26
135 136 2.100584 AGACCACTGATCGATCTTGCTC 59.899 50.000 25.02 17.30 0.00 4.26
136 137 2.106566 AGACCACTGATCGATCTTGCT 58.893 47.619 25.02 10.39 0.00 3.91
137 138 2.200067 CAGACCACTGATCGATCTTGC 58.800 52.381 25.02 10.79 46.03 4.01
138 139 2.200067 GCAGACCACTGATCGATCTTG 58.800 52.381 25.02 20.19 46.03 3.02
139 140 1.827344 TGCAGACCACTGATCGATCTT 59.173 47.619 25.02 10.31 46.03 2.40
140 141 1.478631 TGCAGACCACTGATCGATCT 58.521 50.000 25.02 5.36 46.03 2.75
141 142 2.200067 CTTGCAGACCACTGATCGATC 58.800 52.381 18.72 18.72 46.03 3.69
142 143 1.134580 CCTTGCAGACCACTGATCGAT 60.135 52.381 0.00 0.00 46.03 3.59
143 144 0.247460 CCTTGCAGACCACTGATCGA 59.753 55.000 0.00 0.00 46.03 3.59
144 145 0.036952 ACCTTGCAGACCACTGATCG 60.037 55.000 0.00 0.00 46.03 3.69
145 146 2.234908 AGTACCTTGCAGACCACTGATC 59.765 50.000 0.00 0.00 46.03 2.92
146 147 2.260822 AGTACCTTGCAGACCACTGAT 58.739 47.619 0.00 0.00 46.03 2.90
147 148 1.717032 AGTACCTTGCAGACCACTGA 58.283 50.000 0.00 0.00 46.03 3.41
148 149 2.675317 GCTAGTACCTTGCAGACCACTG 60.675 54.545 0.00 0.00 45.91 3.66
149 150 1.550976 GCTAGTACCTTGCAGACCACT 59.449 52.381 0.00 0.00 32.87 4.00
150 151 1.736032 CGCTAGTACCTTGCAGACCAC 60.736 57.143 0.00 0.00 32.19 4.16
151 152 0.530744 CGCTAGTACCTTGCAGACCA 59.469 55.000 0.00 0.00 32.19 4.02
152 153 0.179108 CCGCTAGTACCTTGCAGACC 60.179 60.000 0.00 0.00 32.19 3.85
153 154 0.815734 TCCGCTAGTACCTTGCAGAC 59.184 55.000 0.00 0.00 32.19 3.51
154 155 1.103803 CTCCGCTAGTACCTTGCAGA 58.896 55.000 0.00 0.00 32.19 4.26
155 156 0.818296 ACTCCGCTAGTACCTTGCAG 59.182 55.000 0.00 0.00 36.36 4.41
156 157 1.067142 CAACTCCGCTAGTACCTTGCA 60.067 52.381 0.00 0.00 37.50 4.08
157 158 1.203994 TCAACTCCGCTAGTACCTTGC 59.796 52.381 0.00 0.00 37.50 4.01
158 159 3.587797 TTCAACTCCGCTAGTACCTTG 57.412 47.619 0.00 0.00 37.50 3.61
159 160 3.577415 ACTTTCAACTCCGCTAGTACCTT 59.423 43.478 0.00 0.00 37.50 3.50
160 161 3.056749 CACTTTCAACTCCGCTAGTACCT 60.057 47.826 0.00 0.00 37.50 3.08
161 162 3.251571 CACTTTCAACTCCGCTAGTACC 58.748 50.000 0.00 0.00 37.50 3.34
162 163 3.910648 ACACTTTCAACTCCGCTAGTAC 58.089 45.455 0.00 0.00 37.50 2.73
163 164 4.553323 GAACACTTTCAACTCCGCTAGTA 58.447 43.478 0.00 0.00 37.50 1.82
164 165 3.391049 GAACACTTTCAACTCCGCTAGT 58.609 45.455 0.00 0.00 41.49 2.57
165 166 2.737252 GGAACACTTTCAACTCCGCTAG 59.263 50.000 0.00 0.00 32.80 3.42
166 167 2.367567 AGGAACACTTTCAACTCCGCTA 59.632 45.455 0.00 0.00 32.80 4.26
167 168 1.141053 AGGAACACTTTCAACTCCGCT 59.859 47.619 0.00 0.00 32.80 5.52
168 169 1.264288 CAGGAACACTTTCAACTCCGC 59.736 52.381 0.00 0.00 32.80 5.54
169 170 2.833794 TCAGGAACACTTTCAACTCCG 58.166 47.619 0.00 0.00 32.80 4.63
170 171 3.003793 GCTTCAGGAACACTTTCAACTCC 59.996 47.826 0.00 0.00 32.80 3.85
171 172 3.627577 TGCTTCAGGAACACTTTCAACTC 59.372 43.478 0.00 0.00 32.80 3.01
172 173 3.620488 TGCTTCAGGAACACTTTCAACT 58.380 40.909 0.00 0.00 32.80 3.16
173 174 4.370364 TTGCTTCAGGAACACTTTCAAC 57.630 40.909 0.00 0.00 32.80 3.18
174 175 5.398603 TTTTGCTTCAGGAACACTTTCAA 57.601 34.783 0.00 0.00 32.80 2.69
175 176 5.596836 ATTTTGCTTCAGGAACACTTTCA 57.403 34.783 0.00 0.00 32.80 2.69
176 177 6.238184 CCAAATTTTGCTTCAGGAACACTTTC 60.238 38.462 3.50 0.00 0.00 2.62
177 178 5.585844 CCAAATTTTGCTTCAGGAACACTTT 59.414 36.000 3.50 0.00 0.00 2.66
178 179 5.104982 TCCAAATTTTGCTTCAGGAACACTT 60.105 36.000 3.50 0.00 0.00 3.16
179 180 4.405358 TCCAAATTTTGCTTCAGGAACACT 59.595 37.500 3.50 0.00 0.00 3.55
180 181 4.692228 TCCAAATTTTGCTTCAGGAACAC 58.308 39.130 3.50 0.00 0.00 3.32
181 182 5.070180 TGATCCAAATTTTGCTTCAGGAACA 59.930 36.000 3.50 0.00 0.00 3.18
182 183 5.540911 TGATCCAAATTTTGCTTCAGGAAC 58.459 37.500 3.50 0.00 0.00 3.62
183 184 5.804944 TGATCCAAATTTTGCTTCAGGAA 57.195 34.783 3.50 0.00 0.00 3.36
184 185 5.804944 TTGATCCAAATTTTGCTTCAGGA 57.195 34.783 3.50 0.00 0.00 3.86
185 186 7.443259 AAATTGATCCAAATTTTGCTTCAGG 57.557 32.000 3.50 0.00 36.56 3.86
186 187 9.211485 ACTAAATTGATCCAAATTTTGCTTCAG 57.789 29.630 8.54 3.34 39.73 3.02
187 188 9.558396 AACTAAATTGATCCAAATTTTGCTTCA 57.442 25.926 8.54 6.00 39.73 3.02
190 191 9.558396 TGAAACTAAATTGATCCAAATTTTGCT 57.442 25.926 8.54 0.00 39.73 3.91
191 192 9.815936 CTGAAACTAAATTGATCCAAATTTTGC 57.184 29.630 8.54 0.00 39.73 3.68
197 198 8.825745 GCAAAACTGAAACTAAATTGATCCAAA 58.174 29.630 0.00 0.00 0.00 3.28
198 199 8.203485 AGCAAAACTGAAACTAAATTGATCCAA 58.797 29.630 0.00 0.00 0.00 3.53
199 200 7.725251 AGCAAAACTGAAACTAAATTGATCCA 58.275 30.769 0.00 0.00 0.00 3.41
200 201 9.346725 CTAGCAAAACTGAAACTAAATTGATCC 57.653 33.333 0.00 0.00 0.00 3.36
201 202 9.899226 ACTAGCAAAACTGAAACTAAATTGATC 57.101 29.630 0.00 0.00 0.00 2.92
204 205 9.612620 CCTACTAGCAAAACTGAAACTAAATTG 57.387 33.333 0.00 0.00 0.00 2.32
205 206 9.569122 TCCTACTAGCAAAACTGAAACTAAATT 57.431 29.630 0.00 0.00 0.00 1.82
206 207 9.569122 TTCCTACTAGCAAAACTGAAACTAAAT 57.431 29.630 0.00 0.00 0.00 1.40
207 208 8.833493 GTTCCTACTAGCAAAACTGAAACTAAA 58.167 33.333 0.00 0.00 0.00 1.85
208 209 8.208903 AGTTCCTACTAGCAAAACTGAAACTAA 58.791 33.333 0.00 0.00 31.21 2.24
209 210 7.656137 CAGTTCCTACTAGCAAAACTGAAACTA 59.344 37.037 16.79 0.00 46.09 2.24
210 211 6.483640 CAGTTCCTACTAGCAAAACTGAAACT 59.516 38.462 16.79 2.58 46.09 2.66
211 212 6.260271 ACAGTTCCTACTAGCAAAACTGAAAC 59.740 38.462 23.63 5.50 46.09 2.78
212 213 6.354130 ACAGTTCCTACTAGCAAAACTGAAA 58.646 36.000 23.63 0.00 46.09 2.69
213 214 5.925509 ACAGTTCCTACTAGCAAAACTGAA 58.074 37.500 23.63 4.06 46.09 3.02
214 215 5.546621 ACAGTTCCTACTAGCAAAACTGA 57.453 39.130 23.63 0.00 46.09 3.41
216 217 9.032624 TCTATTACAGTTCCTACTAGCAAAACT 57.967 33.333 0.00 0.00 31.96 2.66
217 218 9.303537 CTCTATTACAGTTCCTACTAGCAAAAC 57.696 37.037 0.00 0.00 31.96 2.43
218 219 9.032624 ACTCTATTACAGTTCCTACTAGCAAAA 57.967 33.333 0.00 0.00 31.96 2.44
219 220 8.591114 ACTCTATTACAGTTCCTACTAGCAAA 57.409 34.615 0.00 0.00 31.96 3.68
220 221 8.591114 AACTCTATTACAGTTCCTACTAGCAA 57.409 34.615 0.00 0.00 31.96 3.91
221 222 9.339850 CTAACTCTATTACAGTTCCTACTAGCA 57.660 37.037 0.00 0.00 35.63 3.49
222 223 8.291740 GCTAACTCTATTACAGTTCCTACTAGC 58.708 40.741 0.00 0.00 35.63 3.42
223 224 8.785946 GGCTAACTCTATTACAGTTCCTACTAG 58.214 40.741 0.00 0.00 35.63 2.57
224 225 7.723172 GGGCTAACTCTATTACAGTTCCTACTA 59.277 40.741 0.00 0.00 35.63 1.82
225 226 6.550481 GGGCTAACTCTATTACAGTTCCTACT 59.450 42.308 0.00 0.00 35.63 2.57
226 227 6.323225 TGGGCTAACTCTATTACAGTTCCTAC 59.677 42.308 0.00 0.00 35.63 3.18
227 228 6.437755 TGGGCTAACTCTATTACAGTTCCTA 58.562 40.000 0.00 0.00 35.63 2.94
228 229 5.278061 TGGGCTAACTCTATTACAGTTCCT 58.722 41.667 0.00 0.00 35.63 3.36
229 230 5.609533 TGGGCTAACTCTATTACAGTTCC 57.390 43.478 0.00 0.00 35.63 3.62
230 231 9.780186 ATAAATGGGCTAACTCTATTACAGTTC 57.220 33.333 0.00 0.00 35.63 3.01
234 235 9.720769 GCTAATAAATGGGCTAACTCTATTACA 57.279 33.333 0.00 0.00 0.00 2.41
235 236 9.720769 TGCTAATAAATGGGCTAACTCTATTAC 57.279 33.333 0.00 0.00 0.00 1.89
237 238 9.289782 CTTGCTAATAAATGGGCTAACTCTATT 57.710 33.333 0.00 0.00 0.00 1.73
238 239 8.440771 ACTTGCTAATAAATGGGCTAACTCTAT 58.559 33.333 0.00 0.00 0.00 1.98
239 240 7.802117 ACTTGCTAATAAATGGGCTAACTCTA 58.198 34.615 0.00 0.00 0.00 2.43
240 241 6.663734 ACTTGCTAATAAATGGGCTAACTCT 58.336 36.000 0.00 0.00 0.00 3.24
241 242 6.944234 ACTTGCTAATAAATGGGCTAACTC 57.056 37.500 0.00 0.00 0.00 3.01
242 243 8.217799 TCATACTTGCTAATAAATGGGCTAACT 58.782 33.333 0.00 0.00 0.00 2.24
243 244 8.391075 TCATACTTGCTAATAAATGGGCTAAC 57.609 34.615 0.00 0.00 0.00 2.34
244 245 8.436778 TCTCATACTTGCTAATAAATGGGCTAA 58.563 33.333 0.00 0.00 0.00 3.09
245 246 7.973402 TCTCATACTTGCTAATAAATGGGCTA 58.027 34.615 0.00 0.00 0.00 3.93
246 247 6.841601 TCTCATACTTGCTAATAAATGGGCT 58.158 36.000 0.00 0.00 0.00 5.19
247 248 7.175641 ACATCTCATACTTGCTAATAAATGGGC 59.824 37.037 0.00 0.00 0.00 5.36
248 249 8.627208 ACATCTCATACTTGCTAATAAATGGG 57.373 34.615 0.00 0.00 0.00 4.00
272 273 9.522804 TTAACACTTCAAACAAATTCATGGTAC 57.477 29.630 0.00 0.00 0.00 3.34
274 275 8.878769 GTTTAACACTTCAAACAAATTCATGGT 58.121 29.630 0.00 0.00 35.25 3.55
275 276 8.877779 TGTTTAACACTTCAAACAAATTCATGG 58.122 29.630 0.00 0.00 40.64 3.66
276 277 9.687717 GTGTTTAACACTTCAAACAAATTCATG 57.312 29.630 19.64 0.00 45.27 3.07
293 294 9.521841 TCAGGGATATATTGTTTGTGTTTAACA 57.478 29.630 0.00 0.00 36.85 2.41
296 297 9.693739 ACATCAGGGATATATTGTTTGTGTTTA 57.306 29.630 0.00 0.00 0.00 2.01
297 298 8.593945 ACATCAGGGATATATTGTTTGTGTTT 57.406 30.769 0.00 0.00 0.00 2.83
298 299 9.120538 GTACATCAGGGATATATTGTTTGTGTT 57.879 33.333 0.00 0.00 0.00 3.32
299 300 8.271458 TGTACATCAGGGATATATTGTTTGTGT 58.729 33.333 0.00 0.00 0.00 3.72
300 301 8.675705 TGTACATCAGGGATATATTGTTTGTG 57.324 34.615 0.00 0.00 0.00 3.33
301 302 9.342308 CTTGTACATCAGGGATATATTGTTTGT 57.658 33.333 0.00 0.00 0.00 2.83
302 303 9.559732 TCTTGTACATCAGGGATATATTGTTTG 57.440 33.333 0.00 0.00 0.00 2.93
307 308 9.745018 CCAAATCTTGTACATCAGGGATATATT 57.255 33.333 0.00 0.00 0.00 1.28
308 309 8.894592 ACCAAATCTTGTACATCAGGGATATAT 58.105 33.333 0.00 0.00 0.00 0.86
309 310 8.156820 CACCAAATCTTGTACATCAGGGATATA 58.843 37.037 0.00 0.00 0.00 0.86
310 311 7.000472 CACCAAATCTTGTACATCAGGGATAT 59.000 38.462 0.00 0.00 0.00 1.63
311 312 6.356556 CACCAAATCTTGTACATCAGGGATA 58.643 40.000 0.00 0.00 0.00 2.59
312 313 5.195940 CACCAAATCTTGTACATCAGGGAT 58.804 41.667 0.00 0.00 0.00 3.85
313 314 4.567537 CCACCAAATCTTGTACATCAGGGA 60.568 45.833 0.00 0.00 0.00 4.20
314 315 3.696051 CCACCAAATCTTGTACATCAGGG 59.304 47.826 0.00 0.00 0.00 4.45
315 316 3.129287 GCCACCAAATCTTGTACATCAGG 59.871 47.826 0.00 0.00 0.00 3.86
316 317 3.181507 CGCCACCAAATCTTGTACATCAG 60.182 47.826 0.00 0.00 0.00 2.90
317 318 2.746904 CGCCACCAAATCTTGTACATCA 59.253 45.455 0.00 0.00 0.00 3.07
318 319 3.006940 TCGCCACCAAATCTTGTACATC 58.993 45.455 0.00 0.00 0.00 3.06
319 320 3.009723 CTCGCCACCAAATCTTGTACAT 58.990 45.455 0.00 0.00 0.00 2.29
320 321 2.422597 CTCGCCACCAAATCTTGTACA 58.577 47.619 0.00 0.00 0.00 2.90
321 322 1.130561 GCTCGCCACCAAATCTTGTAC 59.869 52.381 0.00 0.00 0.00 2.90
322 323 1.448985 GCTCGCCACCAAATCTTGTA 58.551 50.000 0.00 0.00 0.00 2.41
323 324 1.577328 CGCTCGCCACCAAATCTTGT 61.577 55.000 0.00 0.00 0.00 3.16
324 325 1.135315 CGCTCGCCACCAAATCTTG 59.865 57.895 0.00 0.00 0.00 3.02
325 326 1.003839 TCGCTCGCCACCAAATCTT 60.004 52.632 0.00 0.00 0.00 2.40
326 327 1.448540 CTCGCTCGCCACCAAATCT 60.449 57.895 0.00 0.00 0.00 2.40
327 328 1.696832 GACTCGCTCGCCACCAAATC 61.697 60.000 0.00 0.00 0.00 2.17
328 329 1.741770 GACTCGCTCGCCACCAAAT 60.742 57.895 0.00 0.00 0.00 2.32
329 330 2.357034 GACTCGCTCGCCACCAAA 60.357 61.111 0.00 0.00 0.00 3.28
330 331 3.573772 CTGACTCGCTCGCCACCAA 62.574 63.158 0.00 0.00 0.00 3.67
331 332 4.056125 CTGACTCGCTCGCCACCA 62.056 66.667 0.00 0.00 0.00 4.17
333 334 3.923563 AAGCTGACTCGCTCGCCAC 62.924 63.158 0.00 0.00 39.86 5.01
334 335 3.226429 AAAGCTGACTCGCTCGCCA 62.226 57.895 0.00 0.00 39.86 5.69
335 336 2.433318 AAAGCTGACTCGCTCGCC 60.433 61.111 0.00 0.00 39.86 5.54
336 337 1.950098 GACAAAGCTGACTCGCTCGC 61.950 60.000 0.00 0.00 39.86 5.03
337 338 1.347817 GGACAAAGCTGACTCGCTCG 61.348 60.000 0.00 0.00 39.86 5.03
338 339 0.319900 TGGACAAAGCTGACTCGCTC 60.320 55.000 0.00 0.00 39.86 5.03
339 340 0.601311 GTGGACAAAGCTGACTCGCT 60.601 55.000 0.00 0.00 43.31 4.93
340 341 0.880278 TGTGGACAAAGCTGACTCGC 60.880 55.000 0.00 0.00 0.00 5.03
341 342 1.143305 CTGTGGACAAAGCTGACTCG 58.857 55.000 0.00 0.00 0.00 4.18
342 343 2.224161 ACTCTGTGGACAAAGCTGACTC 60.224 50.000 0.00 0.00 0.00 3.36
343 344 1.765314 ACTCTGTGGACAAAGCTGACT 59.235 47.619 0.00 0.00 0.00 3.41
344 345 2.246719 ACTCTGTGGACAAAGCTGAC 57.753 50.000 0.00 0.00 0.00 3.51
345 346 4.318332 CATTACTCTGTGGACAAAGCTGA 58.682 43.478 0.00 0.00 0.00 4.26
346 347 3.120060 GCATTACTCTGTGGACAAAGCTG 60.120 47.826 0.00 0.00 0.00 4.24
347 348 3.077359 GCATTACTCTGTGGACAAAGCT 58.923 45.455 0.00 0.00 0.00 3.74
348 349 2.813754 TGCATTACTCTGTGGACAAAGC 59.186 45.455 0.00 0.00 0.00 3.51
349 350 5.633830 ATTGCATTACTCTGTGGACAAAG 57.366 39.130 0.00 0.00 0.00 2.77
350 351 5.627499 GATTGCATTACTCTGTGGACAAA 57.373 39.130 0.00 0.00 0.00 2.83
955 956 3.137459 CGCGCTGGTCTCCTCTCT 61.137 66.667 5.56 0.00 0.00 3.10
956 957 4.200283 CCGCGCTGGTCTCCTCTC 62.200 72.222 5.56 0.00 0.00 3.20
961 962 2.200170 AAATTTGCCGCGCTGGTCTC 62.200 55.000 17.38 4.35 41.21 3.36
962 963 1.805428 AAAATTTGCCGCGCTGGTCT 61.805 50.000 17.38 0.80 41.21 3.85
963 964 1.344226 GAAAATTTGCCGCGCTGGTC 61.344 55.000 17.38 11.27 41.21 4.02
964 965 1.372872 GAAAATTTGCCGCGCTGGT 60.373 52.632 17.38 0.00 41.21 4.00
965 966 2.094066 GGAAAATTTGCCGCGCTGG 61.094 57.895 5.56 10.08 42.50 4.85
966 967 1.072666 GAGGAAAATTTGCCGCGCTG 61.073 55.000 9.70 0.00 0.00 5.18
967 968 1.212751 GAGGAAAATTTGCCGCGCT 59.787 52.632 9.70 0.00 0.00 5.92
968 969 1.805539 GGAGGAAAATTTGCCGCGC 60.806 57.895 12.36 0.00 0.00 6.86
969 970 1.514014 CGGAGGAAAATTTGCCGCG 60.514 57.895 12.36 0.00 35.17 6.46
970 971 4.476361 CGGAGGAAAATTTGCCGC 57.524 55.556 10.40 10.40 35.17 6.53
983 984 1.066143 ACATAAGAGTGGCAACCGGAG 60.066 52.381 9.46 0.15 0.00 4.63
984 985 0.981183 ACATAAGAGTGGCAACCGGA 59.019 50.000 9.46 0.00 0.00 5.14
985 986 1.737793 GAACATAAGAGTGGCAACCGG 59.262 52.381 0.00 0.00 0.00 5.28
986 987 1.737793 GGAACATAAGAGTGGCAACCG 59.262 52.381 0.00 0.00 0.00 4.44
987 988 2.749621 CTGGAACATAAGAGTGGCAACC 59.250 50.000 0.00 0.00 38.20 3.77
988 989 3.674997 TCTGGAACATAAGAGTGGCAAC 58.325 45.455 0.00 0.00 38.20 4.17
989 990 4.264253 CATCTGGAACATAAGAGTGGCAA 58.736 43.478 0.00 0.00 38.20 4.52
990 991 3.877559 CATCTGGAACATAAGAGTGGCA 58.122 45.455 0.00 0.00 38.20 4.92
991 992 2.615912 GCATCTGGAACATAAGAGTGGC 59.384 50.000 0.00 0.00 38.20 5.01
992 993 3.624861 GTGCATCTGGAACATAAGAGTGG 59.375 47.826 0.00 0.00 38.20 4.00
993 994 3.624861 GGTGCATCTGGAACATAAGAGTG 59.375 47.826 0.00 0.00 38.20 3.51
994 995 3.370953 GGGTGCATCTGGAACATAAGAGT 60.371 47.826 0.00 0.00 38.20 3.24
995 996 3.209410 GGGTGCATCTGGAACATAAGAG 58.791 50.000 0.00 0.00 38.20 2.85
996 997 2.419990 CGGGTGCATCTGGAACATAAGA 60.420 50.000 0.00 0.00 38.20 2.10
997 998 1.942657 CGGGTGCATCTGGAACATAAG 59.057 52.381 0.00 0.00 38.20 1.73
998 999 2.016604 GCGGGTGCATCTGGAACATAA 61.017 52.381 8.15 0.00 42.15 1.90
999 1000 0.463654 GCGGGTGCATCTGGAACATA 60.464 55.000 8.15 0.00 42.15 2.29
1000 1001 1.750399 GCGGGTGCATCTGGAACAT 60.750 57.895 8.15 0.00 42.15 2.71
1001 1002 2.359850 GCGGGTGCATCTGGAACA 60.360 61.111 8.15 0.00 42.15 3.18
1002 1003 2.045926 AGCGGGTGCATCTGGAAC 60.046 61.111 8.15 0.00 46.23 3.62
1003 1004 2.268920 GAGCGGGTGCATCTGGAA 59.731 61.111 8.15 0.00 46.23 3.53
1004 1005 3.785859 GGAGCGGGTGCATCTGGA 61.786 66.667 8.15 0.00 46.23 3.86
1005 1006 4.864334 GGGAGCGGGTGCATCTGG 62.864 72.222 8.15 0.00 46.23 3.86
1006 1007 4.864334 GGGGAGCGGGTGCATCTG 62.864 72.222 0.00 0.00 46.23 2.90
1017 1018 2.754658 TCGTCGAGGAAGGGGAGC 60.755 66.667 5.12 0.00 0.00 4.70
1018 1019 2.416432 GGTCGTCGAGGAAGGGGAG 61.416 68.421 9.78 0.00 0.00 4.30
1071 1072 4.057428 GTGAGTGTCCGGAGCGCT 62.057 66.667 11.27 11.27 0.00 5.92
1383 1384 4.316823 ACCTCCCCAGTGGCGAGA 62.317 66.667 23.08 9.59 33.26 4.04
1392 1393 3.596799 TCCCTGACGACCTCCCCA 61.597 66.667 0.00 0.00 0.00 4.96
1596 1597 3.899980 CCCTCATCCTCATGTACATCTCA 59.100 47.826 5.07 0.00 0.00 3.27
1744 1745 4.147321 ACAAGGCTTGTTGAGATGACAAT 58.853 39.130 26.54 0.00 42.22 2.71
1767 1768 5.979517 CAGTCTATTCTTCGCATACATGTCA 59.020 40.000 0.00 0.00 0.00 3.58
1779 1780 5.006165 CGCCTGATCAAACAGTCTATTCTTC 59.994 44.000 0.00 0.00 36.30 2.87
1786 1787 1.016130 CGCGCCTGATCAAACAGTCT 61.016 55.000 0.00 0.00 36.30 3.24
1902 1903 3.141398 GACCTGCATCTGTCTGAACAAA 58.859 45.455 0.00 0.00 34.24 2.83
1938 1939 2.524306 CCAACAACTGGCCCTGAATTA 58.476 47.619 0.00 0.00 38.76 1.40
1977 1978 4.161189 CCTAGCTTCAAGAGTCCAAGATCA 59.839 45.833 0.00 0.00 0.00 2.92
2045 2046 0.822164 GACTGCCGTACCTACCATGT 59.178 55.000 0.00 0.00 0.00 3.21
2271 2272 1.979693 GAGACCGGAGTGGCTGAGT 60.980 63.158 9.46 0.00 43.94 3.41
2480 2481 5.335976 CCAAGTTCCAGCTTCTTGTTATTCC 60.336 44.000 13.12 0.00 37.45 3.01
2584 2585 0.550914 TTGTCCCAGTTCTTGGCAGT 59.449 50.000 0.00 0.00 46.32 4.40
2634 2635 1.168407 GCACCTTCTTGCTGCTGTGA 61.168 55.000 0.00 0.00 39.59 3.58
2910 2911 3.009033 CCCTGAGGTTCTTTATGACCACA 59.991 47.826 0.00 0.00 0.00 4.17
2949 2950 2.219445 CGACATGTACTTGATGGCATCG 59.781 50.000 21.65 11.42 0.00 3.84
2952 2953 3.056179 TCTTCGACATGTACTTGATGGCA 60.056 43.478 15.13 0.00 0.00 4.92
3132 3139 0.796312 CGTCCTTGTTCCGGTTCATG 59.204 55.000 0.00 4.59 0.00 3.07
3139 3146 3.411351 CCGCACGTCCTTGTTCCG 61.411 66.667 0.00 0.00 0.00 4.30
3142 3149 2.251642 GCTTCCGCACGTCCTTGTT 61.252 57.895 0.00 0.00 35.78 2.83
3149 3156 1.359848 CTTCATTAGCTTCCGCACGT 58.640 50.000 0.00 0.00 39.10 4.49
3183 3190 2.186532 AGACTCCGCGCATCTCTATA 57.813 50.000 8.75 0.00 0.00 1.31
3228 3236 1.694150 ACAGCTGGAACTAGCACTCAA 59.306 47.619 19.93 0.00 46.07 3.02
3236 3244 0.321671 GCACAGGACAGCTGGAACTA 59.678 55.000 19.93 0.00 0.00 2.24
3305 3313 4.259810 ATTGTCGCTCAAACGAATGTATCG 60.260 41.667 0.00 0.00 46.16 2.92
3307 3315 5.545658 AATTGTCGCTCAAACGAATGTAT 57.454 34.783 0.00 0.00 44.93 2.29
3308 3316 6.469139 TTAATTGTCGCTCAAACGAATGTA 57.531 33.333 0.00 0.00 44.93 2.29
3310 3318 7.112009 CCATATTAATTGTCGCTCAAACGAATG 59.888 37.037 0.00 0.00 44.93 2.67
3311 3319 7.132213 CCATATTAATTGTCGCTCAAACGAAT 58.868 34.615 0.00 1.95 44.93 3.34
3312 3320 6.457663 CCCATATTAATTGTCGCTCAAACGAA 60.458 38.462 0.00 0.00 44.93 3.85
3313 3321 5.007234 CCCATATTAATTGTCGCTCAAACGA 59.993 40.000 0.00 0.00 39.62 3.85
3314 3322 5.204833 CCCATATTAATTGTCGCTCAAACG 58.795 41.667 0.00 0.00 39.62 3.60
3315 3323 5.519722 CCCCATATTAATTGTCGCTCAAAC 58.480 41.667 0.00 0.00 39.62 2.93
3316 3324 4.037446 GCCCCATATTAATTGTCGCTCAAA 59.963 41.667 0.00 0.00 39.62 2.69
3317 3325 3.568007 GCCCCATATTAATTGTCGCTCAA 59.432 43.478 0.00 0.00 40.53 3.02
3318 3326 3.146066 GCCCCATATTAATTGTCGCTCA 58.854 45.455 0.00 0.00 0.00 4.26
3319 3327 3.146066 TGCCCCATATTAATTGTCGCTC 58.854 45.455 0.00 0.00 0.00 5.03
3320 3328 3.149196 CTGCCCCATATTAATTGTCGCT 58.851 45.455 0.00 0.00 0.00 4.93
3321 3329 3.146066 TCTGCCCCATATTAATTGTCGC 58.854 45.455 0.00 0.00 0.00 5.19
3322 3330 3.753272 CCTCTGCCCCATATTAATTGTCG 59.247 47.826 0.00 0.00 0.00 4.35
3323 3331 4.985538 TCCTCTGCCCCATATTAATTGTC 58.014 43.478 0.00 0.00 0.00 3.18
3324 3332 4.416848 ACTCCTCTGCCCCATATTAATTGT 59.583 41.667 0.00 0.00 0.00 2.71
3325 3333 4.990526 ACTCCTCTGCCCCATATTAATTG 58.009 43.478 0.00 0.00 0.00 2.32
3326 3334 6.977244 ATACTCCTCTGCCCCATATTAATT 57.023 37.500 0.00 0.00 0.00 1.40
3327 3335 7.851451 TCATATACTCCTCTGCCCCATATTAAT 59.149 37.037 0.00 0.00 0.00 1.40
3328 3336 7.196187 TCATATACTCCTCTGCCCCATATTAA 58.804 38.462 0.00 0.00 0.00 1.40
3329 3337 6.752091 TCATATACTCCTCTGCCCCATATTA 58.248 40.000 0.00 0.00 0.00 0.98
3330 3338 5.603750 TCATATACTCCTCTGCCCCATATT 58.396 41.667 0.00 0.00 0.00 1.28
3331 3339 5.226504 TCATATACTCCTCTGCCCCATAT 57.773 43.478 0.00 0.00 0.00 1.78
3332 3340 4.692523 TCATATACTCCTCTGCCCCATA 57.307 45.455 0.00 0.00 0.00 2.74
3333 3341 3.567375 TCATATACTCCTCTGCCCCAT 57.433 47.619 0.00 0.00 0.00 4.00
3334 3342 3.344535 TTCATATACTCCTCTGCCCCA 57.655 47.619 0.00 0.00 0.00 4.96
3335 3343 3.244596 GGTTTCATATACTCCTCTGCCCC 60.245 52.174 0.00 0.00 0.00 5.80
3336 3344 3.555168 CGGTTTCATATACTCCTCTGCCC 60.555 52.174 0.00 0.00 0.00 5.36
3337 3345 3.555168 CCGGTTTCATATACTCCTCTGCC 60.555 52.174 0.00 0.00 0.00 4.85
3338 3346 3.555168 CCCGGTTTCATATACTCCTCTGC 60.555 52.174 0.00 0.00 0.00 4.26
3339 3347 3.895656 TCCCGGTTTCATATACTCCTCTG 59.104 47.826 0.00 0.00 0.00 3.35
3340 3348 4.194678 TCCCGGTTTCATATACTCCTCT 57.805 45.455 0.00 0.00 0.00 3.69
3341 3349 4.322801 CCATCCCGGTTTCATATACTCCTC 60.323 50.000 0.00 0.00 0.00 3.71
3342 3350 3.583086 CCATCCCGGTTTCATATACTCCT 59.417 47.826 0.00 0.00 0.00 3.69
3412 3422 5.911178 TCCTCCCTATGGTATCAAATCTGTT 59.089 40.000 0.00 0.00 0.00 3.16
3414 3424 5.307976 TGTCCTCCCTATGGTATCAAATCTG 59.692 44.000 0.00 0.00 0.00 2.90
3456 3466 4.101942 GACAATGACTGATGAGAGACGTC 58.898 47.826 7.70 7.70 35.29 4.34
3494 3504 1.961277 GTGGAACTGCACTCGGGTG 60.961 63.158 12.23 12.23 45.53 4.61
3557 3610 2.409651 GCCTACGACTCTGGCGAG 59.590 66.667 0.00 5.08 43.10 5.03
3646 3699 4.887190 GGTGTTGGCGGTGGTGGT 62.887 66.667 0.00 0.00 0.00 4.16
3647 3700 4.885270 TGGTGTTGGCGGTGGTGG 62.885 66.667 0.00 0.00 0.00 4.61
3648 3701 3.286751 CTGGTGTTGGCGGTGGTG 61.287 66.667 0.00 0.00 0.00 4.17
3655 3708 1.745489 GATCGGTCCTGGTGTTGGC 60.745 63.158 0.00 0.00 0.00 4.52
3661 3714 3.823330 GTCGCGATCGGTCCTGGT 61.823 66.667 14.06 0.00 36.13 4.00
3666 3719 2.202388 TTGACGTCGCGATCGGTC 60.202 61.111 26.31 24.58 36.13 4.79
3873 3926 1.961277 CCACGCTTCGAGTTGCCTT 60.961 57.895 0.00 0.00 0.00 4.35
3878 3938 0.814010 ACTTTGCCACGCTTCGAGTT 60.814 50.000 0.00 0.00 0.00 3.01
3913 3973 2.636412 GCCCCGGGAGAAAAGCAAC 61.636 63.158 26.32 0.00 0.00 4.17
3952 4022 3.059120 CCTCGTCAAGATTCGTAGCGATA 60.059 47.826 0.00 0.00 35.23 2.92
4011 4087 1.078759 CTAGCAGCTCCAACGAACGG 61.079 60.000 0.00 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.