AutoCloner

Multiple sequence alignment - TraesCS1D01G205000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G205000	chr1D	100.000	2489	0	0	1	2489	290507032	290504544	0.000000e+00	4597
1	TraesCS1D01G205000	chr1D	98.105	1530	27	2	1	1529	254476863	254475335	0.000000e+00	2663
2	TraesCS1D01G205000	chr1D	96.861	1529	47	1	2	1529	180356530	180358058	0.000000e+00	2556
3	TraesCS1D01G205000	chr1D	96.086	1533	49	6	1	1532	244768346	244766824	0.000000e+00	2488
4	TraesCS1D01G205000	chr1D	95.953	1532	61	1	1	1532	244201157	244199627	0.000000e+00	2484
5	TraesCS1D01G205000	chr1A	98.497	1530	22	1	1	1529	554448080	554449609	0.000000e+00	2697
6	TraesCS1D01G205000	chr3B	98.240	1534	25	1	1	1532	201492869	201491336	0.000000e+00	2682
7	TraesCS1D01G205000	chr3B	89.505	505	45	5	1574	2073	57217615	57217114	1.260000e-177	632
8	TraesCS1D01G205000	chr3B	90.300	433	39	3	2054	2486	379577744	379578173	4.650000e-157	564
9	TraesCS1D01G205000	chr3B	89.838	433	40	4	2054	2486	568776681	568777109	1.010000e-153	553
10	TraesCS1D01G205000	chr3B	88.863	431	46	2	2057	2487	136502550	136502122	1.700000e-146	529
11	TraesCS1D01G205000	chr5D	98.238	1532	26	1	2	1532	503330775	503329244	0.000000e+00	2678
12	TraesCS1D01G205000	chr5D	97.973	1529	31	0	1	1529	6236035	6237563	0.000000e+00	2652
13	TraesCS1D01G205000	chr2D	98.432	1403	20	1	129	1529	33929969	33931371	0.000000e+00	2468
14	TraesCS1D01G205000	chr2D	91.278	493	36	4	1574	2060	520406644	520407135	0.000000e+00	665
15	TraesCS1D01G205000	chr2D	99.087	219	1	1	1	218	573706719	573706937	2.320000e-105	392
16	TraesCS1D01G205000	chr4D	86.192	927	111	12	1574	2489	27698432	27697512	0.000000e+00	987
17	TraesCS1D01G205000	chr4D	90.316	506	38	6	1574	2073	509554578	509554078	0.000000e+00	652
18	TraesCS1D01G205000	chr2A	81.564	895	137	22	1582	2460	365981197	365982079	0.000000e+00	713
19	TraesCS1D01G205000	chr1B	81.155	918	131	20	1581	2489	100820406	100819522	0.000000e+00	699
20	TraesCS1D01G205000	chr4B	90.855	503	37	4	1577	2073	295540899	295540400	0.000000e+00	665
21	TraesCS1D01G205000	chr4B	89.837	492	42	4	1576	2060	157171328	157170838	2.100000e-175	625
22	TraesCS1D01G205000	chr7D	90.244	492	40	5	1575	2060	365740069	365740558	9.710000e-179	636
23	TraesCS1D01G205000	chr3D	90.644	481	38	3	1586	2060	416255450	416255929	1.260000e-177	632
24	TraesCS1D01G205000	chr5B	89.655	435	42	3	2054	2487	548903821	548904253	3.620000e-153	551
25	TraesCS1D01G205000	chr7B	89.401	434	44	2	2054	2487	371309298	371309729	1.680000e-151	545
26	TraesCS1D01G205000	chr2B	88.915	433	46	1	2054	2486	197534859	197534429	1.310000e-147	532

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G205000	chr1D	290504544	290507032	2488	True	4597	4597	100.000	1	2489	1	chr1D.!!$R4	2488
1	TraesCS1D01G205000	chr1D	254475335	254476863	1528	True	2663	2663	98.105	1	1529	1	chr1D.!!$R3	1528
2	TraesCS1D01G205000	chr1D	180356530	180358058	1528	False	2556	2556	96.861	2	1529	1	chr1D.!!$F1	1527
3	TraesCS1D01G205000	chr1D	244766824	244768346	1522	True	2488	2488	96.086	1	1532	1	chr1D.!!$R2	1531
4	TraesCS1D01G205000	chr1D	244199627	244201157	1530	True	2484	2484	95.953	1	1532	1	chr1D.!!$R1	1531
5	TraesCS1D01G205000	chr1A	554448080	554449609	1529	False	2697	2697	98.497	1	1529	1	chr1A.!!$F1	1528
6	TraesCS1D01G205000	chr3B	201491336	201492869	1533	True	2682	2682	98.240	1	1532	1	chr3B.!!$R3	1531
7	TraesCS1D01G205000	chr3B	57217114	57217615	501	True	632	632	89.505	1574	2073	1	chr3B.!!$R1	499
8	TraesCS1D01G205000	chr5D	503329244	503330775	1531	True	2678	2678	98.238	2	1532	1	chr5D.!!$R1	1530
9	TraesCS1D01G205000	chr5D	6236035	6237563	1528	False	2652	2652	97.973	1	1529	1	chr5D.!!$F1	1528
10	TraesCS1D01G205000	chr2D	33929969	33931371	1402	False	2468	2468	98.432	129	1529	1	chr2D.!!$F1	1400
11	TraesCS1D01G205000	chr4D	27697512	27698432	920	True	987	987	86.192	1574	2489	1	chr4D.!!$R1	915
12	TraesCS1D01G205000	chr4D	509554078	509554578	500	True	652	652	90.316	1574	2073	1	chr4D.!!$R2	499
13	TraesCS1D01G205000	chr2A	365981197	365982079	882	False	713	713	81.564	1582	2460	1	chr2A.!!$F1	878
14	TraesCS1D01G205000	chr1B	100819522	100820406	884	True	699	699	81.155	1581	2489	1	chr1B.!!$R1	908

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
82	83	1.134694	GGGCAATGAGTTTCGACGC	59.865	57.895	0.0	0.0	0.0	5.19	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1566	1574	0.599558	TAGACCGGCTGTACACACAC	59.4	55.0	0.0	0.0	0.0	3.82	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
82	83	1.134694	GGGCAATGAGTTTCGACGC	59.865	57.895	0.00	0.00	0.00	5.19
279	285	7.038154	CTTGACCAAACAAGTTCCAATTCTA	57.962	36.000	0.00	0.00	41.32	2.10
312	318	8.664798	CAACTACACCAAATGATCTTTCGAATA	58.335	33.333	0.00	0.00	0.00	1.75
509	515	7.019388	TGGCTCCCTCTTTAGTGAGATTATAT	58.981	38.462	0.00	0.00	36.23	0.86
562	568	5.941555	GCTATGGGAGCCTGTACTATTAT	57.058	43.478	0.00	0.00	46.41	1.28
568	574	4.264713	GGGAGCCTGTACTATTATAGGGGA	60.265	50.000	4.15	0.00	37.13	4.81
929	936	2.039879	GGAGAGGGGCTCTTTTGTGTAA	59.960	50.000	0.00	0.00	41.35	2.41
1328	1336	5.495640	GTCTGTCTTCTGGATTTGGAGAAT	58.504	41.667	0.00	0.00	0.00	2.40
1331	1339	5.879763	TGTCTTCTGGATTTGGAGAATTGA	58.120	37.500	0.00	0.00	0.00	2.57
1398	1406	3.937814	TGATAATCATCCGCGCCTTAAT	58.062	40.909	0.00	0.00	0.00	1.40
1460	1468	8.683776	TTACGTAAGGATTATATAACCCCCAT	57.316	34.615	3.29	0.00	46.39	4.00
1529	1537	5.643777	GCTCACTTATACAACACAACTCCAT	59.356	40.000	0.00	0.00	0.00	3.41
1556	1564	5.861222	ATATATGTGTGTGTGTGTGTGTG	57.139	39.130	0.00	0.00	0.00	3.82
1557	1565	1.819928	ATGTGTGTGTGTGTGTGTGT	58.180	45.000	0.00	0.00	0.00	3.72
1558	1566	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
1559	1567	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
1560	1568	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
1561	1569	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
1562	1570	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
1563	1571	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
1564	1572	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
1565	1573	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
1566	1574	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
1567	1575	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
1568	1576	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
1569	1577	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
1570	1578	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
1571	1579	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
1572	1580	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
1670	1679	1.069636	GCACTGCACTTTCAGTAGCAC	60.070	52.381	0.00	0.00	44.81	4.40
1817	1831	1.140852	AGCTATGGATTAGGCGCAACA	59.859	47.619	10.83	0.00	0.00	3.33
1882	1896	1.137872	AGTTTTGAAAATGGTGCGGCA	59.862	42.857	0.00	0.00	0.00	5.69
1932	1946	3.423907	CGCGTTTTTGTATAAACCGCTCT	60.424	43.478	19.07	0.00	40.98	4.09
1987	2005	1.078709	TCGAGGCGCATCTTTTTCAG	58.921	50.000	20.86	2.34	0.00	3.02
2050	2072	8.782327	CAGTTTTAAATTTAGTAAATCGCGGAC	58.218	33.333	6.13	0.00	0.00	4.79
2067	2089	2.218603	GGACTTCTGTTTTCGCTCCAA	58.781	47.619	0.00	0.00	0.00	3.53
2095	2117	0.871722	CCGTTTGTCGAAATGAGGCA	59.128	50.000	0.00	0.00	42.86	4.75
2102	2124	2.679336	TGTCGAAATGAGGCATGTGATG	59.321	45.455	0.00	0.00	0.00	3.07
2121	2143	1.735198	CGCCGTTGGAAAGCTACGA	60.735	57.895	7.53	0.00	37.47	3.43
2139	2161	0.306533	GAACGAGGCGCAACTTTCAA	59.693	50.000	10.83	0.00	0.00	2.69
2142	2164	2.147958	ACGAGGCGCAACTTTCAAATA	58.852	42.857	10.83	0.00	0.00	1.40
2145	2167	4.165779	CGAGGCGCAACTTTCAAATATTT	58.834	39.130	10.83	0.00	0.00	1.40
2320	2342	5.971202	CGCAACTTTTTCATGTAGAACACTT	59.029	36.000	0.00	0.00	35.56	3.16
2321	2343	6.140737	CGCAACTTTTTCATGTAGAACACTTC	59.859	38.462	0.00	0.00	35.56	3.01
2323	2345	7.166473	GCAACTTTTTCATGTAGAACACTTCTG	59.834	37.037	0.00	0.00	40.94	3.02
2337	2359	3.825014	ACACTTCTGCTAGTTCCTTACGA	59.175	43.478	0.00	0.00	0.00	3.43
2347	2369	6.127423	TGCTAGTTCCTTACGATTTAAGAGCT	60.127	38.462	0.00	0.00	0.00	4.09
2361	2383	9.612620	CGATTTAAGAGCTGTTTTGATTTTACT	57.387	29.630	0.00	0.00	0.00	2.24
2388	2411	0.234884	GGACACTCTGTTTTTCGCGG	59.765	55.000	6.13	0.00	0.00	6.46
2389	2412	1.214367	GACACTCTGTTTTTCGCGGA	58.786	50.000	6.13	0.00	0.00	5.54
2405	2428	0.719465	CGGACCCAAAATCGACGAAG	59.281	55.000	0.00	0.00	0.00	3.79
2406	2429	1.084289	GGACCCAAAATCGACGAAGG	58.916	55.000	0.00	1.78	0.00	3.46
2408	2431	0.688487	ACCCAAAATCGACGAAGGGA	59.312	50.000	25.37	0.00	39.60	4.20
2417	2440	1.413767	CGACGAAGGGAACTGCATCG	61.414	60.000	2.27	2.27	42.68	3.84
2427	2450	2.552315	GGAACTGCATCGGACAGAAAAA	59.448	45.455	7.16	0.00	38.55	1.94
2428	2451	3.191371	GGAACTGCATCGGACAGAAAAAT	59.809	43.478	7.16	0.00	38.55	1.82
2437	2460	2.666619	CGGACAGAAAAATGCACTGCTC	60.667	50.000	1.98	0.00	35.38	4.26
2443	2466	3.830755	AGAAAAATGCACTGCTCTGGATT	59.169	39.130	1.98	0.00	33.95	3.01
2467	2491	3.190849	CGCACTGCATCAGACGGG	61.191	66.667	1.11	0.00	35.18	5.28

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
82	83	5.294799	TCGATAAAAACGGATACACCCAATG	59.705	40.000	0.00	0.00	34.64	2.82
239	245	6.442541	TGGTCAAGTAAGGGAAACTCAATA	57.557	37.500	0.00	0.00	0.00	1.90
312	318	5.128008	GCCATAAACTAGAGAGTCTTGACCT	59.872	44.000	0.00	0.00	33.58	3.85
509	515	1.702182	TTGGTTCAGGCATTTGCTCA	58.298	45.000	2.12	0.00	41.70	4.26
562	568	3.443052	TCCGTACTGAACATTTCCCCTA	58.557	45.455	0.00	0.00	0.00	3.53
568	574	8.019656	ACTATAGGAATCCGTACTGAACATTT	57.980	34.615	4.43	0.00	0.00	2.32
1193	1201	1.603172	CGCTAGCTAAAGATCCACCGG	60.603	57.143	13.93	0.00	0.00	5.28
1328	1336	2.540516	TCGCGTTCTTGAAAATCGTCAA	59.459	40.909	5.77	0.00	36.15	3.18
1331	1339	3.432252	AGATTCGCGTTCTTGAAAATCGT	59.568	39.130	5.77	0.00	0.00	3.73
1398	1406	5.116180	CAACTTTCAGGCATTAGGATACGA	58.884	41.667	0.00	0.00	46.39	3.43
1532	1540	7.064490	CACACACACACACACACACATATATAT	59.936	37.037	0.00	0.00	0.00	0.86
1533	1541	6.367422	CACACACACACACACACACATATATA	59.633	38.462	0.00	0.00	0.00	0.86
1534	1542	5.179182	CACACACACACACACACACATATAT	59.821	40.000	0.00	0.00	0.00	0.86
1535	1543	4.509600	CACACACACACACACACACATATA	59.490	41.667	0.00	0.00	0.00	0.86
1536	1544	3.312146	CACACACACACACACACACATAT	59.688	43.478	0.00	0.00	0.00	1.78
1537	1545	2.675348	CACACACACACACACACACATA	59.325	45.455	0.00	0.00	0.00	2.29
1538	1546	1.468127	CACACACACACACACACACAT	59.532	47.619	0.00	0.00	0.00	3.21
1539	1547	0.871057	CACACACACACACACACACA	59.129	50.000	0.00	0.00	0.00	3.72
1540	1548	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
1541	1549	0.871057	CACACACACACACACACACA	59.129	50.000	0.00	0.00	0.00	3.72
1542	1550	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
1543	1551	0.871057	CACACACACACACACACACA	59.129	50.000	0.00	0.00	0.00	3.72
1544	1552	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
1545	1553	0.871057	CACACACACACACACACACA	59.129	50.000	0.00	0.00	0.00	3.72
1546	1554	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
1547	1555	0.871057	CACACACACACACACACACA	59.129	50.000	0.00	0.00	0.00	3.72
1548	1556	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
1549	1557	0.871057	CACACACACACACACACACA	59.129	50.000	0.00	0.00	0.00	3.72
1550	1558	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
1551	1559	0.871057	CACACACACACACACACACA	59.129	50.000	0.00	0.00	0.00	3.72
1552	1560	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
1553	1561	0.871057	CACACACACACACACACACA	59.129	50.000	0.00	0.00	0.00	3.72
1554	1562	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
1555	1563	2.070028	GTACACACACACACACACACA	58.930	47.619	0.00	0.00	0.00	3.72
1556	1564	2.070028	TGTACACACACACACACACAC	58.930	47.619	0.00	0.00	0.00	3.82
1557	1565	2.342179	CTGTACACACACACACACACA	58.658	47.619	0.00	0.00	0.00	3.72
1558	1566	1.062002	GCTGTACACACACACACACAC	59.938	52.381	0.00	0.00	0.00	3.82
1559	1567	1.364721	GCTGTACACACACACACACA	58.635	50.000	0.00	0.00	0.00	3.72
1560	1568	0.655733	GGCTGTACACACACACACAC	59.344	55.000	0.00	0.00	0.00	3.82
1561	1569	0.808060	CGGCTGTACACACACACACA	60.808	55.000	0.00	0.00	0.00	3.72
1562	1570	1.495584	CCGGCTGTACACACACACAC	61.496	60.000	0.00	0.00	0.00	3.82
1563	1571	1.227409	CCGGCTGTACACACACACA	60.227	57.895	0.00	0.00	0.00	3.72
1564	1572	1.219522	GACCGGCTGTACACACACAC	61.220	60.000	0.00	0.00	0.00	3.82
1565	1573	1.068417	GACCGGCTGTACACACACA	59.932	57.895	0.00	0.00	0.00	3.72
1566	1574	0.599558	TAGACCGGCTGTACACACAC	59.400	55.000	0.00	0.00	0.00	3.82
1567	1575	1.552578	ATAGACCGGCTGTACACACA	58.447	50.000	0.00	0.00	0.00	3.72
1568	1576	2.667473	AATAGACCGGCTGTACACAC	57.333	50.000	0.00	0.00	0.00	3.82
1569	1577	3.491964	GCATAATAGACCGGCTGTACACA	60.492	47.826	0.00	0.00	0.00	3.72
1570	1578	3.057734	GCATAATAGACCGGCTGTACAC	58.942	50.000	0.00	0.00	0.00	2.90
1571	1579	2.963101	AGCATAATAGACCGGCTGTACA	59.037	45.455	0.00	0.00	32.76	2.90
1572	1580	3.662247	AGCATAATAGACCGGCTGTAC	57.338	47.619	0.00	0.00	32.76	2.90
1670	1679	1.233950	TGTGTGTATTGCAGCACCCG	61.234	55.000	13.16	0.00	34.94	5.28
1786	1800	2.672961	TCCATAGCTTCTCAACGGTG	57.327	50.000	0.00	0.00	0.00	4.94
1817	1831	3.609175	CGAAAAGTGTTCAACATGGCGAT	60.609	43.478	0.00	0.00	0.00	4.58
1932	1946	2.675844	CGGTGTATCATTTGCTTCCGAA	59.324	45.455	0.00	0.00	39.17	4.30
2050	2072	5.748152	TCAAAAATTGGAGCGAAAACAGAAG	59.252	36.000	0.00	0.00	0.00	2.85
2067	2089	6.037098	TCATTTCGACAAACGGTTCAAAAAT	58.963	32.000	0.00	0.00	42.82	1.82
2095	2117	1.240641	TTTCCAACGGCGCATCACAT	61.241	50.000	10.83	0.00	0.00	3.21
2102	2124	2.479198	GTAGCTTTCCAACGGCGC	59.521	61.111	6.90	0.00	0.00	6.53
2121	2143	0.736053	TTTGAAAGTTGCGCCTCGTT	59.264	45.000	4.18	1.99	0.00	3.85
2167	2189	8.422566	ACGATTTTCCCAATTAACTAAAAACCA	58.577	29.630	0.00	0.00	0.00	3.67
2183	2205	2.038269	TCAGCCGCACGATTTTCCC	61.038	57.895	0.00	0.00	0.00	3.97
2184	2206	1.134694	GTCAGCCGCACGATTTTCC	59.865	57.895	0.00	0.00	0.00	3.13
2212	2234	1.524848	TTCATGAAAAACGGCCGCTA	58.475	45.000	28.58	5.47	0.00	4.26
2238	2260	4.481930	TCATTTTGACTAGCGGTTTGTG	57.518	40.909	0.00	0.00	0.00	3.33
2249	2271	7.643764	CGGCGTATAATTTGAATCATTTTGACT	59.356	33.333	0.00	0.00	0.00	3.41
2253	2275	7.221838	CCAACGGCGTATAATTTGAATCATTTT	59.778	33.333	15.20	0.00	0.00	1.82
2320	2342	7.400599	TCTTAAATCGTAAGGAACTAGCAGA	57.599	36.000	0.00	0.00	38.49	4.26
2321	2343	6.199342	GCTCTTAAATCGTAAGGAACTAGCAG	59.801	42.308	0.00	0.00	38.49	4.24
2323	2345	6.199342	CAGCTCTTAAATCGTAAGGAACTAGC	59.801	42.308	0.00	0.00	38.49	3.42
2347	2369	6.419413	GTCCGCATTTCAGTAAAATCAAAACA	59.581	34.615	0.00	0.00	35.32	2.83
2361	2383	2.254546	AACAGAGTGTCCGCATTTCA	57.745	45.000	0.00	0.00	0.00	2.69
2388	2411	1.084289	CCCTTCGTCGATTTTGGGTC	58.916	55.000	12.26	0.00	0.00	4.46
2389	2412	0.688487	TCCCTTCGTCGATTTTGGGT	59.312	50.000	17.06	0.00	36.23	4.51
2405	2428	0.036388	TTCTGTCCGATGCAGTTCCC	60.036	55.000	0.00	0.00	35.60	3.97
2406	2429	1.808411	TTTCTGTCCGATGCAGTTCC	58.192	50.000	0.00	0.00	35.60	3.62
2408	2431	3.612479	GCATTTTTCTGTCCGATGCAGTT	60.612	43.478	0.00	0.00	41.92	3.16
2417	2440	2.555757	AGAGCAGTGCATTTTTCTGTCC	59.444	45.455	19.20	0.00	0.00	4.02
2427	2450	2.502142	TTCAATCCAGAGCAGTGCAT	57.498	45.000	19.20	1.87	0.00	3.96
2428	2451	2.275134	TTTCAATCCAGAGCAGTGCA	57.725	45.000	19.20	0.00	0.00	4.57
2437	2460	1.666888	GCAGTGCGGTTTTCAATCCAG	60.667	52.381	0.00	0.00	0.00	3.86
2443	2466	0.592637	CTGATGCAGTGCGGTTTTCA	59.407	50.000	11.20	7.38	0.00	2.69
2467	2491	1.990563	GAAATCATGCAGTGCACTTGC	59.009	47.619	22.44	25.13	43.04	4.01

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.