Multiple sequence alignment - TraesCS1D01G204900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G204900 chr1D 100.000 5898 0 0 1 5898 290442491 290448388 0.000000e+00 10892.0
1 TraesCS1D01G204900 chr1D 85.766 274 22 9 5577 5834 350975581 350975309 2.090000e-69 274.0
2 TraesCS1D01G204900 chr1D 81.868 182 30 2 5345 5526 414285230 414285408 3.680000e-32 150.0
3 TraesCS1D01G204900 chr1A 95.504 3581 100 23 1 3555 362861375 362864920 0.000000e+00 5664.0
4 TraesCS1D01G204900 chr1A 93.939 1848 57 13 4101 5898 362865033 362866875 0.000000e+00 2741.0
5 TraesCS1D01G204900 chr1A 96.639 119 4 0 3860 3978 362864917 362865035 1.300000e-46 198.0
6 TraesCS1D01G204900 chr1A 81.092 238 36 6 5346 5578 541149356 541149589 1.310000e-41 182.0
7 TraesCS1D01G204900 chr1B 95.658 3547 96 22 37 3555 391571444 391574960 0.000000e+00 5644.0
8 TraesCS1D01G204900 chr1B 97.436 1560 39 1 4099 5657 391575071 391576630 0.000000e+00 2658.0
9 TraesCS1D01G204900 chr1B 87.215 219 14 6 5681 5898 391576619 391576824 2.750000e-58 237.0
10 TraesCS1D01G204900 chr1B 96.350 137 5 0 3968 4104 71639017 71638881 5.950000e-55 226.0
11 TraesCS1D01G204900 chr1B 93.662 142 8 1 3969 4110 270318430 270318570 1.670000e-50 211.0
12 TraesCS1D01G204900 chr1B 98.319 119 2 0 3860 3978 391574957 391575075 5.990000e-50 209.0
13 TraesCS1D01G204900 chr5A 98.397 312 5 0 3553 3864 630124088 630123777 3.110000e-152 549.0
14 TraesCS1D01G204900 chr5A 98.046 307 6 0 3555 3861 611029897 611029591 8.700000e-148 534.0
15 TraesCS1D01G204900 chr6A 96.594 323 9 2 3551 3873 104307274 104306954 8.700000e-148 534.0
16 TraesCS1D01G204900 chr6A 97.125 313 9 0 3551 3863 105585570 105585882 4.050000e-146 529.0
17 TraesCS1D01G204900 chr6A 72.251 764 176 24 2356 3098 230707825 230707077 2.790000e-48 204.0
18 TraesCS1D01G204900 chr6A 83.333 108 13 4 5444 5550 235843538 235843435 1.750000e-15 95.3
19 TraesCS1D01G204900 chr6A 79.412 102 19 2 2134 2234 230708044 230707944 2.950000e-08 71.3
20 TraesCS1D01G204900 chr3A 97.143 315 9 0 3549 3863 363316290 363315976 3.130000e-147 532.0
21 TraesCS1D01G204900 chr3A 97.428 311 8 0 3553 3863 291788646 291788336 1.130000e-146 531.0
22 TraesCS1D01G204900 chr2A 97.444 313 7 1 3553 3864 241962393 241962705 3.130000e-147 532.0
23 TraesCS1D01G204900 chr2A 80.159 252 42 5 5332 5578 756365350 756365598 1.310000e-41 182.0
24 TraesCS1D01G204900 chr4A 96.308 325 9 3 3552 3873 478200050 478199726 1.130000e-146 531.0
25 TraesCS1D01G204900 chr4A 80.800 250 34 9 5335 5578 132995538 132995297 3.630000e-42 183.0
26 TraesCS1D01G204900 chr4A 80.162 247 38 7 5336 5578 718416153 718416392 2.180000e-39 174.0
27 TraesCS1D01G204900 chr7D 97.115 312 7 2 3552 3863 598495656 598495347 5.240000e-145 525.0
28 TraesCS1D01G204900 chr7D 95.000 140 5 2 3976 4114 636760661 636760523 9.950000e-53 219.0
29 TraesCS1D01G204900 chr7D 79.600 250 37 10 5336 5576 613538532 613538288 3.660000e-37 167.0
30 TraesCS1D01G204900 chrUn 87.179 273 19 8 5577 5834 246700352 246700623 4.470000e-76 296.0
31 TraesCS1D01G204900 chrUn 87.179 273 19 8 5577 5834 275333019 275332748 4.470000e-76 296.0
32 TraesCS1D01G204900 chrUn 87.179 273 19 8 5577 5834 413342610 413342339 4.470000e-76 296.0
33 TraesCS1D01G204900 chrUn 96.350 137 4 1 3976 4112 11031786 11031651 2.140000e-54 224.0
34 TraesCS1D01G204900 chrUn 80.080 251 35 11 5336 5578 285473811 285474054 7.860000e-39 172.0
35 TraesCS1D01G204900 chrUn 80.080 251 35 11 5336 5578 347527661 347527418 7.860000e-39 172.0
36 TraesCS1D01G204900 chr7B 87.179 273 19 8 5577 5834 716799202 716799473 4.470000e-76 296.0
37 TraesCS1D01G204900 chr7B 86.813 273 20 8 5577 5834 698129968 698130239 2.080000e-74 291.0
38 TraesCS1D01G204900 chr7B 96.269 134 5 0 3970 4103 551815408 551815275 2.770000e-53 220.0
39 TraesCS1D01G204900 chr7B 83.417 199 26 5 5347 5541 3551127 3550932 1.690000e-40 178.0
40 TraesCS1D01G204900 chr6D 87.179 273 19 8 5577 5834 430471582 430471853 4.470000e-76 296.0
41 TraesCS1D01G204900 chr6D 86.667 270 20 8 5577 5831 370009556 370009824 9.670000e-73 285.0
42 TraesCS1D01G204900 chr6D 84.982 273 23 10 5577 5834 193790708 193790439 1.630000e-65 261.0
43 TraesCS1D01G204900 chr6D 72.513 764 174 24 2356 3098 178005427 178004679 1.290000e-51 215.0
44 TraesCS1D01G204900 chr6D 80.392 102 18 2 2134 2234 178005646 178005546 6.340000e-10 76.8
45 TraesCS1D01G204900 chr3D 87.179 273 19 8 5577 5834 202627579 202627850 4.470000e-76 296.0
46 TraesCS1D01G204900 chr3D 96.296 135 4 1 3976 4110 614251218 614251085 2.770000e-53 220.0
47 TraesCS1D01G204900 chr3D 94.964 139 6 1 3965 4103 210622559 210622422 3.580000e-52 217.0
48 TraesCS1D01G204900 chr4D 86.813 273 20 8 5577 5834 135046144 135045873 2.080000e-74 291.0
49 TraesCS1D01G204900 chr4D 82.418 273 24 12 5577 5834 241246242 241245979 3.580000e-52 217.0
50 TraesCS1D01G204900 chr5D 86.331 278 22 8 5577 5839 80116331 80116607 7.480000e-74 289.0
51 TraesCS1D01G204900 chr5D 93.706 143 7 2 3973 4115 290643683 290643823 4.630000e-51 213.0
52 TraesCS1D01G204900 chr5D 80.808 198 30 7 5347 5541 482118152 482117960 1.320000e-31 148.0
53 TraesCS1D01G204900 chr5D 79.459 185 33 4 5359 5541 329279839 329280020 6.200000e-25 126.0
54 TraesCS1D01G204900 chr3B 83.270 263 34 8 5322 5578 543888322 543888580 3.550000e-57 233.0
55 TraesCS1D01G204900 chr2D 97.692 130 3 0 3973 4102 591951779 591951908 2.140000e-54 224.0
56 TraesCS1D01G204900 chr2D 80.972 247 36 8 5338 5578 32177637 32177878 1.010000e-42 185.0
57 TraesCS1D01G204900 chr2D 80.242 248 40 6 5336 5578 170509446 170509689 1.690000e-40 178.0
58 TraesCS1D01G204900 chr2B 82.591 247 35 6 5336 5578 19081508 19081750 1.670000e-50 211.0
59 TraesCS1D01G204900 chr4B 83.981 206 28 5 5333 5536 101296573 101296775 6.030000e-45 193.0
60 TraesCS1D01G204900 chr4B 89.796 98 8 1 5444 5541 108183119 108183024 2.230000e-24 124.0
61 TraesCS1D01G204900 chr4B 84.091 132 14 4 5451 5578 622898949 622898821 2.890000e-23 121.0
62 TraesCS1D01G204900 chr4B 94.444 54 2 1 5835 5887 89698154 89698101 1.360000e-11 82.4
63 TraesCS1D01G204900 chr5B 82.949 217 29 6 5336 5550 74672268 74672058 7.800000e-44 189.0
64 TraesCS1D01G204900 chr5B 82.524 206 31 4 5346 5550 686537337 686537538 6.070000e-40 176.0
65 TraesCS1D01G204900 chr6B 71.859 764 179 23 2356 3098 295767263 295768011 2.810000e-43 187.0
66 TraesCS1D01G204900 chr6B 80.392 102 18 2 2134 2234 295767044 295767144 6.340000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G204900 chr1D 290442491 290448388 5897 False 10892.000000 10892 100.000000 1 5898 1 chr1D.!!$F1 5897
1 TraesCS1D01G204900 chr1A 362861375 362866875 5500 False 2867.666667 5664 95.360667 1 5898 3 chr1A.!!$F2 5897
2 TraesCS1D01G204900 chr1B 391571444 391576824 5380 False 2187.000000 5644 94.657000 37 5898 4 chr1B.!!$F2 5861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
908 958 0.302589 GGGTGTTGTTGTCGTCGTTC 59.697 55.000 0.00 0.00 0.00 3.95 F
1115 1165 0.039165 GCTTCCGGAAAAACAGCTGG 60.039 55.000 19.39 4.08 0.00 4.85 F
1242 1292 0.743097 GGATTTGGTGGAGCTGCATC 59.257 55.000 12.38 12.29 0.00 3.91 F
2672 2727 0.111061 TTGCTGCACCTCATGGAAGT 59.889 50.000 0.00 0.00 37.04 3.01 F
3125 3180 3.302365 TTTTGCCTTTCTGCTGCATAC 57.698 42.857 1.31 0.00 34.51 2.39 F
3573 3630 0.113190 AGGCCTCCTTTGGTTTGGAG 59.887 55.000 0.00 0.00 46.91 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2090 2145 1.197721 CATCGGAGATTTTATGCCCGC 59.802 52.381 0.00 0.00 45.12 6.13 R
2672 2727 3.465832 TCTTCCCACACCACCCATTATA 58.534 45.455 0.00 0.00 0.00 0.98 R
3131 3186 5.295045 CACTTAGCAGTGCATACATTGATGA 59.705 40.000 19.20 0.00 44.16 2.92 R
3554 3611 0.113190 CTCCAAACCAAAGGAGGCCT 59.887 55.000 3.86 3.86 46.11 5.19 R
3973 4030 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73 R
5184 5241 2.154798 CTGAACCGACCGAGCAAGGA 62.155 60.000 4.39 0.00 34.73 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.213802 TGGAACCCAGGTAAAAACTTTCTTTT 59.786 34.615 0.00 0.00 33.22 2.27
26 27 7.107542 GGAACCCAGGTAAAAACTTTCTTTTT 58.892 34.615 0.00 0.00 35.91 1.94
87 94 5.471556 TTCATCTTGGAACCTACAACGTA 57.528 39.130 0.00 0.00 0.00 3.57
89 96 3.287312 TCTTGGAACCTACAACGTACG 57.713 47.619 15.01 15.01 0.00 3.67
91 98 3.818210 TCTTGGAACCTACAACGTACGTA 59.182 43.478 23.12 5.12 0.00 3.57
117 124 9.654663 ACTACAAAAGATATTCTACAACCACTC 57.345 33.333 0.00 0.00 0.00 3.51
173 181 1.349026 ACACAGAACATGGGAGTCTGG 59.651 52.381 17.11 11.04 35.10 3.86
216 231 3.056821 TGCAAGCTGGTACACTACTACAG 60.057 47.826 0.00 0.00 0.00 2.74
282 297 4.148825 GCGCACCACGGATCCTCT 62.149 66.667 10.75 0.00 43.93 3.69
397 416 5.185635 CCATTCAATAATTCCCATATGCGGT 59.814 40.000 0.00 0.00 0.00 5.68
557 576 3.470567 GCGCGCGGAGGAATATCG 61.471 66.667 33.06 0.00 0.00 2.92
558 577 2.050351 CGCGCGGAGGAATATCGT 60.050 61.111 24.84 0.00 0.00 3.73
559 578 1.208358 CGCGCGGAGGAATATCGTA 59.792 57.895 24.84 0.00 0.00 3.43
778 811 1.467678 CCCGAGCGGAGATCCTGAAT 61.468 60.000 11.05 0.00 41.58 2.57
805 838 3.185155 CGTCGTCGGGTAAGCTCT 58.815 61.111 0.00 0.00 0.00 4.09
808 841 2.202756 CGTCGGGTAAGCTCTGCC 60.203 66.667 0.00 0.00 0.00 4.85
810 843 3.081409 TCGGGTAAGCTCTGCCCC 61.081 66.667 13.63 7.82 39.22 5.80
811 844 4.176752 CGGGTAAGCTCTGCCCCC 62.177 72.222 13.63 6.34 39.22 5.40
834 871 1.590610 TTGCTTTGTGTGTGCGTGGT 61.591 50.000 0.00 0.00 0.00 4.16
901 951 3.859411 TTGTTCTTGGGTGTTGTTGTC 57.141 42.857 0.00 0.00 0.00 3.18
902 952 1.740585 TGTTCTTGGGTGTTGTTGTCG 59.259 47.619 0.00 0.00 0.00 4.35
903 953 1.741145 GTTCTTGGGTGTTGTTGTCGT 59.259 47.619 0.00 0.00 0.00 4.34
904 954 1.658994 TCTTGGGTGTTGTTGTCGTC 58.341 50.000 0.00 0.00 0.00 4.20
905 955 0.303493 CTTGGGTGTTGTTGTCGTCG 59.697 55.000 0.00 0.00 0.00 5.12
906 956 0.391395 TTGGGTGTTGTTGTCGTCGT 60.391 50.000 0.00 0.00 0.00 4.34
907 957 0.391395 TGGGTGTTGTTGTCGTCGTT 60.391 50.000 0.00 0.00 0.00 3.85
908 958 0.302589 GGGTGTTGTTGTCGTCGTTC 59.697 55.000 0.00 0.00 0.00 3.95
909 959 1.283736 GGTGTTGTTGTCGTCGTTCT 58.716 50.000 0.00 0.00 0.00 3.01
910 960 1.662122 GGTGTTGTTGTCGTCGTTCTT 59.338 47.619 0.00 0.00 0.00 2.52
911 961 2.536130 GGTGTTGTTGTCGTCGTTCTTG 60.536 50.000 0.00 0.00 0.00 3.02
912 962 2.093152 GTGTTGTTGTCGTCGTTCTTGT 59.907 45.455 0.00 0.00 0.00 3.16
920 970 5.073192 TGTCGTCGTTCTTGTTTGTTATG 57.927 39.130 0.00 0.00 0.00 1.90
930 980 4.988540 TCTTGTTTGTTATGTCTCACGAGG 59.011 41.667 0.00 0.00 0.00 4.63
975 1025 0.749649 TTGTTGGTGGTGATTGTGCC 59.250 50.000 0.00 0.00 0.00 5.01
1115 1165 0.039165 GCTTCCGGAAAAACAGCTGG 60.039 55.000 19.39 4.08 0.00 4.85
1242 1292 0.743097 GGATTTGGTGGAGCTGCATC 59.257 55.000 12.38 12.29 0.00 3.91
1254 1307 3.305064 GGAGCTGCATCTAGTAGTAGTGC 60.305 52.174 17.96 17.96 35.52 4.40
1332 1385 3.003480 AGCAGCTGAAACGAAATCCTAC 58.997 45.455 20.43 0.00 0.00 3.18
1401 1454 4.214971 GCGCATCTGAACCATGATAATTCT 59.785 41.667 0.30 0.00 0.00 2.40
1832 1887 2.281070 CTGCCGCAGTTCAGTGGT 60.281 61.111 12.54 0.00 41.26 4.16
2006 2061 2.165998 GTGAGCAAAGGAAGAATGGCT 58.834 47.619 0.00 0.00 0.00 4.75
2092 2147 7.493743 TCTCTAAATACTTACTAGTCTGGCG 57.506 40.000 0.00 0.00 35.78 5.69
2672 2727 0.111061 TTGCTGCACCTCATGGAAGT 59.889 50.000 0.00 0.00 37.04 3.01
3125 3180 3.302365 TTTTGCCTTTCTGCTGCATAC 57.698 42.857 1.31 0.00 34.51 2.39
3130 3185 4.015764 TGCCTTTCTGCTGCATACAAATA 58.984 39.130 1.31 0.00 0.00 1.40
3131 3186 4.646040 TGCCTTTCTGCTGCATACAAATAT 59.354 37.500 1.31 0.00 0.00 1.28
3132 3187 5.218139 GCCTTTCTGCTGCATACAAATATC 58.782 41.667 1.31 0.00 0.00 1.63
3551 3608 7.414762 GGTGCGGTAGAAACACATAATACATTT 60.415 37.037 0.00 0.00 36.00 2.32
3552 3609 7.966204 GTGCGGTAGAAACACATAATACATTTT 59.034 33.333 0.00 0.00 34.43 1.82
3553 3610 8.516234 TGCGGTAGAAACACATAATACATTTTT 58.484 29.630 0.00 0.00 0.00 1.94
3554 3611 9.991388 GCGGTAGAAACACATAATACATTTTTA 57.009 29.630 0.00 0.00 0.00 1.52
3559 3616 9.255029 AGAAACACATAATACATTTTTAGGCCT 57.745 29.630 11.78 11.78 0.00 5.19
3560 3617 9.516314 GAAACACATAATACATTTTTAGGCCTC 57.484 33.333 9.68 0.00 0.00 4.70
3561 3618 7.582667 ACACATAATACATTTTTAGGCCTCC 57.417 36.000 9.68 0.00 0.00 4.30
3562 3619 7.354312 ACACATAATACATTTTTAGGCCTCCT 58.646 34.615 9.68 0.00 37.71 3.69
3563 3620 7.839200 ACACATAATACATTTTTAGGCCTCCTT 59.161 33.333 9.68 0.00 34.61 3.36
3564 3621 8.695456 CACATAATACATTTTTAGGCCTCCTTT 58.305 33.333 9.68 0.00 34.61 3.11
3565 3622 8.695456 ACATAATACATTTTTAGGCCTCCTTTG 58.305 33.333 9.68 4.68 34.61 2.77
3566 3623 6.544928 AATACATTTTTAGGCCTCCTTTGG 57.455 37.500 9.68 0.00 34.61 3.28
3567 3624 3.856900 ACATTTTTAGGCCTCCTTTGGT 58.143 40.909 9.68 0.00 34.61 3.67
3568 3625 4.231273 ACATTTTTAGGCCTCCTTTGGTT 58.769 39.130 9.68 0.00 34.61 3.67
3569 3626 4.658435 ACATTTTTAGGCCTCCTTTGGTTT 59.342 37.500 9.68 0.00 34.61 3.27
3570 3627 4.681074 TTTTTAGGCCTCCTTTGGTTTG 57.319 40.909 9.68 0.00 34.61 2.93
3571 3628 2.302587 TTAGGCCTCCTTTGGTTTGG 57.697 50.000 9.68 0.00 34.61 3.28
3572 3629 1.451449 TAGGCCTCCTTTGGTTTGGA 58.549 50.000 9.68 0.00 34.61 3.53
3573 3630 0.113190 AGGCCTCCTTTGGTTTGGAG 59.887 55.000 0.00 0.00 46.91 3.86
3580 3637 5.139435 CTCCTTTGGTTTGGAGGAATTTC 57.861 43.478 0.00 0.00 44.44 2.17
3581 3638 4.551671 TCCTTTGGTTTGGAGGAATTTCA 58.448 39.130 0.00 0.00 36.67 2.69
3582 3639 5.154418 TCCTTTGGTTTGGAGGAATTTCAT 58.846 37.500 0.00 0.00 36.67 2.57
3583 3640 6.318913 TCCTTTGGTTTGGAGGAATTTCATA 58.681 36.000 0.00 0.00 36.67 2.15
3584 3641 6.437162 TCCTTTGGTTTGGAGGAATTTCATAG 59.563 38.462 0.00 0.00 36.67 2.23
3585 3642 6.351286 CCTTTGGTTTGGAGGAATTTCATAGG 60.351 42.308 0.00 0.00 32.11 2.57
3586 3643 5.528600 TGGTTTGGAGGAATTTCATAGGA 57.471 39.130 0.00 0.00 0.00 2.94
3587 3644 5.898120 TGGTTTGGAGGAATTTCATAGGAA 58.102 37.500 0.00 0.00 0.00 3.36
3588 3645 6.502138 TGGTTTGGAGGAATTTCATAGGAAT 58.498 36.000 0.00 0.00 31.93 3.01
3589 3646 6.959366 TGGTTTGGAGGAATTTCATAGGAATT 59.041 34.615 0.00 0.00 31.93 2.17
3590 3647 7.124147 TGGTTTGGAGGAATTTCATAGGAATTC 59.876 37.037 0.00 0.00 31.93 2.17
3591 3648 7.343057 GGTTTGGAGGAATTTCATAGGAATTCT 59.657 37.037 5.23 0.00 31.93 2.40
3592 3649 9.408648 GTTTGGAGGAATTTCATAGGAATTCTA 57.591 33.333 5.23 0.00 31.93 2.10
3593 3650 9.632638 TTTGGAGGAATTTCATAGGAATTCTAG 57.367 33.333 5.23 0.00 31.93 2.43
3594 3651 8.567198 TGGAGGAATTTCATAGGAATTCTAGA 57.433 34.615 5.23 0.00 31.93 2.43
3595 3652 8.654997 TGGAGGAATTTCATAGGAATTCTAGAG 58.345 37.037 5.23 0.00 31.93 2.43
3596 3653 8.100164 GGAGGAATTTCATAGGAATTCTAGAGG 58.900 40.741 5.23 0.00 31.93 3.69
3597 3654 8.805145 AGGAATTTCATAGGAATTCTAGAGGA 57.195 34.615 5.23 0.00 31.93 3.71
3598 3655 9.404077 AGGAATTTCATAGGAATTCTAGAGGAT 57.596 33.333 5.23 0.00 31.93 3.24
3605 3662 9.707957 TCATAGGAATTCTAGAGGATAGGATTC 57.292 37.037 5.23 7.20 38.32 2.52
3606 3663 9.713684 CATAGGAATTCTAGAGGATAGGATTCT 57.286 37.037 13.16 5.20 38.80 2.40
3637 3694 3.895704 TTTCCTTTAGAGCCCTTTGGT 57.104 42.857 0.00 0.00 0.00 3.67
3638 3695 3.895704 TTCCTTTAGAGCCCTTTGGTT 57.104 42.857 0.00 0.00 0.00 3.67
3639 3696 3.434940 TCCTTTAGAGCCCTTTGGTTC 57.565 47.619 0.00 0.00 41.91 3.62
3640 3697 2.714250 TCCTTTAGAGCCCTTTGGTTCA 59.286 45.455 0.00 0.00 43.89 3.18
3641 3698 3.333680 TCCTTTAGAGCCCTTTGGTTCAT 59.666 43.478 0.00 0.00 43.89 2.57
3642 3699 4.538490 TCCTTTAGAGCCCTTTGGTTCATA 59.462 41.667 0.00 0.00 43.89 2.15
3643 3700 4.884164 CCTTTAGAGCCCTTTGGTTCATAG 59.116 45.833 0.00 0.00 43.89 2.23
3644 3701 4.503714 TTAGAGCCCTTTGGTTCATAGG 57.496 45.455 0.00 0.00 43.89 2.57
3645 3702 2.562296 AGAGCCCTTTGGTTCATAGGA 58.438 47.619 6.07 0.00 43.89 2.94
3646 3703 2.919602 AGAGCCCTTTGGTTCATAGGAA 59.080 45.455 6.07 0.00 43.89 3.36
3647 3704 3.529319 AGAGCCCTTTGGTTCATAGGAAT 59.471 43.478 6.07 0.00 43.89 3.01
3648 3705 3.633986 GAGCCCTTTGGTTCATAGGAATG 59.366 47.826 6.07 0.00 41.28 2.67
3649 3706 2.695147 GCCCTTTGGTTCATAGGAATGG 59.305 50.000 6.07 0.00 35.14 3.16
3650 3707 3.627237 GCCCTTTGGTTCATAGGAATGGA 60.627 47.826 6.07 0.00 35.14 3.41
3651 3708 4.808042 CCCTTTGGTTCATAGGAATGGAT 58.192 43.478 6.07 0.00 35.14 3.41
3652 3709 5.211201 CCCTTTGGTTCATAGGAATGGATT 58.789 41.667 6.07 0.00 35.14 3.01
3653 3710 5.302823 CCCTTTGGTTCATAGGAATGGATTC 59.697 44.000 6.07 0.00 35.14 2.52
3690 3747 6.394345 GGATTGGTTCCTATCCTCCATATT 57.606 41.667 19.71 0.00 41.78 1.28
3691 3748 6.794534 GGATTGGTTCCTATCCTCCATATTT 58.205 40.000 19.71 0.00 41.78 1.40
3692 3749 6.887002 GGATTGGTTCCTATCCTCCATATTTC 59.113 42.308 19.71 0.00 41.78 2.17
3693 3750 6.840090 TTGGTTCCTATCCTCCATATTTCA 57.160 37.500 0.00 0.00 0.00 2.69
3694 3751 7.406620 TTGGTTCCTATCCTCCATATTTCAT 57.593 36.000 0.00 0.00 0.00 2.57
3695 3752 8.518720 TTGGTTCCTATCCTCCATATTTCATA 57.481 34.615 0.00 0.00 0.00 2.15
3696 3753 8.150827 TGGTTCCTATCCTCCATATTTCATAG 57.849 38.462 0.00 0.00 0.00 2.23
3697 3754 7.182749 TGGTTCCTATCCTCCATATTTCATAGG 59.817 40.741 0.00 0.00 35.93 2.57
3698 3755 7.403231 GGTTCCTATCCTCCATATTTCATAGGA 59.597 40.741 2.01 2.01 39.98 2.94
3699 3756 8.826765 GTTCCTATCCTCCATATTTCATAGGAA 58.173 37.037 12.28 12.28 44.92 3.36
3700 3757 8.989045 TCCTATCCTCCATATTTCATAGGAAA 57.011 34.615 4.85 4.85 46.36 3.13
3701 3758 9.405369 TCCTATCCTCCATATTTCATAGGAAAA 57.595 33.333 6.65 0.00 45.52 2.29
3720 3777 8.512966 AGGAAAATAAAAATGAGCCTAGACTC 57.487 34.615 0.00 0.00 37.19 3.36
3729 3786 4.908601 TGAGCCTAGACTCAATGGAAAA 57.091 40.909 6.25 0.00 43.59 2.29
3730 3787 5.241403 TGAGCCTAGACTCAATGGAAAAA 57.759 39.130 6.25 0.00 43.59 1.94
3731 3788 5.819991 TGAGCCTAGACTCAATGGAAAAAT 58.180 37.500 6.25 0.00 43.59 1.82
3732 3789 6.248433 TGAGCCTAGACTCAATGGAAAAATT 58.752 36.000 6.25 0.00 43.59 1.82
3733 3790 6.375455 TGAGCCTAGACTCAATGGAAAAATTC 59.625 38.462 6.25 0.00 43.59 2.17
3734 3791 6.183360 GAGCCTAGACTCAATGGAAAAATTCC 60.183 42.308 0.51 2.12 42.14 3.01
3735 3792 8.285329 GAGCCTAGACTCAATGGAAAAATTCCT 61.285 40.741 10.28 0.00 42.21 3.36
3746 3803 5.984233 GGAAAAATTCCTTTGGTGTCAAC 57.016 39.130 1.86 0.00 46.57 3.18
3747 3804 4.814234 GGAAAAATTCCTTTGGTGTCAACC 59.186 41.667 1.86 0.00 46.57 3.77
3764 3821 5.356882 TCAACCAAATGACATCTCGTTTC 57.643 39.130 0.00 0.00 33.97 2.78
3765 3822 4.215399 TCAACCAAATGACATCTCGTTTCC 59.785 41.667 0.00 0.00 33.97 3.13
3766 3823 4.021102 ACCAAATGACATCTCGTTTCCT 57.979 40.909 0.00 0.00 33.97 3.36
3767 3824 5.160607 ACCAAATGACATCTCGTTTCCTA 57.839 39.130 0.00 0.00 33.97 2.94
3768 3825 5.745227 ACCAAATGACATCTCGTTTCCTAT 58.255 37.500 0.00 0.00 33.97 2.57
3769 3826 6.180472 ACCAAATGACATCTCGTTTCCTATT 58.820 36.000 0.00 0.00 33.97 1.73
3770 3827 6.316390 ACCAAATGACATCTCGTTTCCTATTC 59.684 38.462 0.00 0.00 33.97 1.75
3771 3828 6.238484 CCAAATGACATCTCGTTTCCTATTCC 60.238 42.308 0.00 0.00 33.97 3.01
3772 3829 5.878406 ATGACATCTCGTTTCCTATTCCT 57.122 39.130 0.00 0.00 0.00 3.36
3773 3830 6.978674 ATGACATCTCGTTTCCTATTCCTA 57.021 37.500 0.00 0.00 0.00 2.94
3774 3831 6.145338 TGACATCTCGTTTCCTATTCCTAC 57.855 41.667 0.00 0.00 0.00 3.18
3775 3832 5.892119 TGACATCTCGTTTCCTATTCCTACT 59.108 40.000 0.00 0.00 0.00 2.57
3776 3833 6.039493 TGACATCTCGTTTCCTATTCCTACTC 59.961 42.308 0.00 0.00 0.00 2.59
3777 3834 5.892119 ACATCTCGTTTCCTATTCCTACTCA 59.108 40.000 0.00 0.00 0.00 3.41
3778 3835 6.551601 ACATCTCGTTTCCTATTCCTACTCAT 59.448 38.462 0.00 0.00 0.00 2.90
3779 3836 7.724506 ACATCTCGTTTCCTATTCCTACTCATA 59.275 37.037 0.00 0.00 0.00 2.15
3780 3837 7.747155 TCTCGTTTCCTATTCCTACTCATAG 57.253 40.000 0.00 0.00 0.00 2.23
3820 3877 9.753674 TGTCATCTTATTTCCTACAAAATTCCT 57.246 29.630 0.00 0.00 31.50 3.36
3829 3886 8.726870 TTTCCTACAAAATTCCTATTCCTACG 57.273 34.615 0.00 0.00 0.00 3.51
3830 3887 7.664552 TCCTACAAAATTCCTATTCCTACGA 57.335 36.000 0.00 0.00 0.00 3.43
3831 3888 8.258850 TCCTACAAAATTCCTATTCCTACGAT 57.741 34.615 0.00 0.00 0.00 3.73
3832 3889 9.370930 TCCTACAAAATTCCTATTCCTACGATA 57.629 33.333 0.00 0.00 0.00 2.92
3833 3890 9.991906 CCTACAAAATTCCTATTCCTACGATAA 57.008 33.333 0.00 0.00 0.00 1.75
3836 3893 9.117183 ACAAAATTCCTATTCCTACGATAAACC 57.883 33.333 0.00 0.00 0.00 3.27
3837 3894 9.338622 CAAAATTCCTATTCCTACGATAAACCT 57.661 33.333 0.00 0.00 0.00 3.50
3841 3898 7.951347 TCCTATTCCTACGATAAACCTATCC 57.049 40.000 0.00 0.00 31.68 2.59
3842 3899 7.706674 TCCTATTCCTACGATAAACCTATCCT 58.293 38.462 0.00 0.00 31.68 3.24
3843 3900 8.839745 TCCTATTCCTACGATAAACCTATCCTA 58.160 37.037 0.00 0.00 31.68 2.94
3844 3901 9.643735 CCTATTCCTACGATAAACCTATCCTAT 57.356 37.037 0.00 0.00 31.68 2.57
3847 3904 8.945195 TTCCTACGATAAACCTATCCTATGAA 57.055 34.615 0.00 0.00 31.68 2.57
3848 3905 8.345724 TCCTACGATAAACCTATCCTATGAAC 57.654 38.462 0.00 0.00 31.68 3.18
3849 3906 7.395489 TCCTACGATAAACCTATCCTATGAACC 59.605 40.741 0.00 0.00 31.68 3.62
3850 3907 6.989155 ACGATAAACCTATCCTATGAACCA 57.011 37.500 0.00 0.00 31.68 3.67
3851 3908 7.369551 ACGATAAACCTATCCTATGAACCAA 57.630 36.000 0.00 0.00 31.68 3.67
3852 3909 7.798071 ACGATAAACCTATCCTATGAACCAAA 58.202 34.615 0.00 0.00 31.68 3.28
3853 3910 8.269317 ACGATAAACCTATCCTATGAACCAAAA 58.731 33.333 0.00 0.00 31.68 2.44
3854 3911 8.774586 CGATAAACCTATCCTATGAACCAAAAG 58.225 37.037 0.00 0.00 31.68 2.27
3855 3912 9.847224 GATAAACCTATCCTATGAACCAAAAGA 57.153 33.333 0.00 0.00 0.00 2.52
3856 3913 9.853177 ATAAACCTATCCTATGAACCAAAAGAG 57.147 33.333 0.00 0.00 0.00 2.85
3857 3914 6.253946 ACCTATCCTATGAACCAAAAGAGG 57.746 41.667 0.00 0.00 0.00 3.69
3858 3915 5.066593 CCTATCCTATGAACCAAAAGAGGC 58.933 45.833 0.00 0.00 0.00 4.70
3944 4001 5.488919 TCAGTTTCCTCATCCCTATGTTTCT 59.511 40.000 0.00 0.00 34.50 2.52
3973 4030 7.523293 TTTCTTCTTCCATGCTTCATGTTTA 57.477 32.000 6.12 0.00 39.94 2.01
3974 4031 6.748333 TCTTCTTCCATGCTTCATGTTTAG 57.252 37.500 6.12 1.47 39.94 1.85
3975 4032 6.240894 TCTTCTTCCATGCTTCATGTTTAGT 58.759 36.000 6.12 0.00 39.94 2.24
3976 4033 7.394016 TCTTCTTCCATGCTTCATGTTTAGTA 58.606 34.615 6.12 0.00 39.94 1.82
3977 4034 6.985188 TCTTCCATGCTTCATGTTTAGTAC 57.015 37.500 6.12 0.00 39.94 2.73
3978 4035 6.711277 TCTTCCATGCTTCATGTTTAGTACT 58.289 36.000 0.00 0.00 39.94 2.73
3979 4036 6.818644 TCTTCCATGCTTCATGTTTAGTACTC 59.181 38.462 0.00 0.00 39.94 2.59
3980 4037 5.428253 TCCATGCTTCATGTTTAGTACTCC 58.572 41.667 0.00 0.00 39.94 3.85
3981 4038 4.576463 CCATGCTTCATGTTTAGTACTCCC 59.424 45.833 0.00 0.00 39.94 4.30
3982 4039 5.431765 CATGCTTCATGTTTAGTACTCCCT 58.568 41.667 0.00 0.00 37.12 4.20
3983 4040 5.086104 TGCTTCATGTTTAGTACTCCCTC 57.914 43.478 0.00 0.00 0.00 4.30
3984 4041 4.081087 TGCTTCATGTTTAGTACTCCCTCC 60.081 45.833 0.00 0.00 0.00 4.30
3985 4042 4.683832 CTTCATGTTTAGTACTCCCTCCG 58.316 47.826 0.00 0.00 0.00 4.63
3986 4043 3.705051 TCATGTTTAGTACTCCCTCCGT 58.295 45.455 0.00 0.00 0.00 4.69
3987 4044 3.698040 TCATGTTTAGTACTCCCTCCGTC 59.302 47.826 0.00 0.00 0.00 4.79
3988 4045 2.450476 TGTTTAGTACTCCCTCCGTCC 58.550 52.381 0.00 0.00 0.00 4.79
3989 4046 1.753649 GTTTAGTACTCCCTCCGTCCC 59.246 57.143 0.00 0.00 0.00 4.46
3990 4047 1.002069 TTAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
3991 4048 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
3992 4049 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
3993 4050 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3994 4051 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3995 4052 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3996 4053 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3997 4054 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3998 4055 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3999 4056 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
4000 4057 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
4001 4058 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
4002 4059 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
4003 4060 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
4004 4061 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
4005 4062 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
4006 4063 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
4007 4064 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
4008 4065 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
4009 4066 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
4010 4067 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
4011 4068 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
4012 4069 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
4013 4070 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
4021 4078 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
4022 4079 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
4024 4081 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
4025 4082 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
4034 4091 9.825109 TTGTCTAAATACGGATGTATCAAATCA 57.175 29.630 0.00 0.00 40.42 2.57
4035 4092 9.996554 TGTCTAAATACGGATGTATCAAATCAT 57.003 29.630 0.00 0.00 40.42 2.45
4037 4094 9.996554 TCTAAATACGGATGTATCAAATCATGT 57.003 29.630 0.00 0.00 40.42 3.21
4043 4100 8.506168 ACGGATGTATCAAATCATGTTTTAGT 57.494 30.769 1.50 0.00 0.00 2.24
4044 4101 9.607988 ACGGATGTATCAAATCATGTTTTAGTA 57.392 29.630 1.50 0.00 0.00 1.82
4077 4134 8.952278 ACATCCGTATCTAGATGAATCTAAGAC 58.048 37.037 15.79 1.20 42.04 3.01
4078 4135 8.951243 CATCCGTATCTAGATGAATCTAAGACA 58.049 37.037 15.79 0.00 42.04 3.41
4079 4136 8.919777 TCCGTATCTAGATGAATCTAAGACAA 57.080 34.615 15.79 0.00 38.80 3.18
4080 4137 9.004717 TCCGTATCTAGATGAATCTAAGACAAG 57.995 37.037 15.79 0.00 38.80 3.16
4081 4138 9.004717 CCGTATCTAGATGAATCTAAGACAAGA 57.995 37.037 15.79 0.00 38.80 3.02
4092 4149 8.712363 TGAATCTAAGACAAGAATTTTGAGACG 58.288 33.333 7.18 0.00 0.00 4.18
4093 4150 7.602517 ATCTAAGACAAGAATTTTGAGACGG 57.397 36.000 7.18 0.00 0.00 4.79
4094 4151 6.755206 TCTAAGACAAGAATTTTGAGACGGA 58.245 36.000 7.18 0.00 0.00 4.69
4095 4152 5.931441 AAGACAAGAATTTTGAGACGGAG 57.069 39.130 7.18 0.00 0.00 4.63
4096 4153 4.319177 AGACAAGAATTTTGAGACGGAGG 58.681 43.478 7.18 0.00 0.00 4.30
4097 4154 3.412386 ACAAGAATTTTGAGACGGAGGG 58.588 45.455 7.18 0.00 0.00 4.30
4160 4217 5.978919 TGCTGATGATCAACTTTTGTTTGTC 59.021 36.000 0.00 0.00 41.35 3.18
4531 4588 5.453198 GGTTTTGGTGAATGTTCTGGATGTT 60.453 40.000 0.00 0.00 0.00 2.71
5171 5228 9.231297 ACTAGTGCTGTTATCACAATTTATGTT 57.769 29.630 0.00 0.00 41.46 2.71
5207 5264 0.179067 TGCTCGGTCGGTTCAGTTTT 60.179 50.000 0.00 0.00 0.00 2.43
5305 5395 4.935808 GGATAAGTAGTGTTTCTGGGTGTG 59.064 45.833 0.00 0.00 0.00 3.82
5590 5683 8.712285 ACGCACTACATTAGCTCTTTAAATAA 57.288 30.769 0.00 0.00 0.00 1.40
5594 5687 8.560374 CACTACATTAGCTCTTTAAATAAGGGC 58.440 37.037 1.17 1.17 43.92 5.19
5595 5688 8.272173 ACTACATTAGCTCTTTAAATAAGGGCA 58.728 33.333 11.55 0.00 45.93 5.36
5626 5728 9.196552 TCTTCATTAATATTGATACTCACTGCG 57.803 33.333 0.00 0.00 0.00 5.18
5671 5773 3.070018 CCAACCTCTGCACTTCACTAAG 58.930 50.000 0.00 0.00 38.77 2.18
5732 5837 8.951243 CCAATTCACCCTTTTTCAAAGTTTTAA 58.049 29.630 0.00 0.00 0.00 1.52
5751 5856 1.359168 ACTTTAGTGTGACCCCCTCC 58.641 55.000 0.00 0.00 0.00 4.30
5755 5860 0.544357 TAGTGTGACCCCCTCCTGTG 60.544 60.000 0.00 0.00 0.00 3.66
5785 5890 4.569943 TCTAAGCTCATGAAACACCTCAC 58.430 43.478 0.00 0.00 0.00 3.51
5850 5955 1.604278 GCCGAATGAAAGATGGCTACC 59.396 52.381 0.00 0.00 42.44 3.18
5892 5998 0.460284 CGCTCATCCCGTGCTAAAGT 60.460 55.000 0.00 0.00 31.76 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 2.622942 ACGTACGTTGTAGGTTCCAAGA 59.377 45.455 16.72 0.00 0.00 3.02
87 94 9.578439 GGTTGTAGAATATCTTTTGTAGTACGT 57.422 33.333 0.00 0.00 0.00 3.57
91 98 9.654663 GAGTGGTTGTAGAATATCTTTTGTAGT 57.345 33.333 0.00 0.00 0.00 2.73
117 124 0.457035 CTTTGCATGATGGGGGTTCG 59.543 55.000 0.00 0.00 0.00 3.95
173 181 4.748600 GCAACAGGGTACTATACGGAATTC 59.251 45.833 0.00 0.00 0.00 2.17
216 231 1.453669 CTGCTAGATCCCAAGGGGC 59.546 63.158 5.08 0.69 43.94 5.80
225 240 1.055040 ACTGATGGCCCTGCTAGATC 58.945 55.000 0.00 0.00 0.00 2.75
421 440 4.265056 GTTGACGGGTGGGCCAGT 62.265 66.667 6.40 0.00 45.77 4.00
557 576 3.551250 GCAGCCTCCGATTTCTCTACTAC 60.551 52.174 0.00 0.00 0.00 2.73
558 577 2.623889 GCAGCCTCCGATTTCTCTACTA 59.376 50.000 0.00 0.00 0.00 1.82
559 578 1.410882 GCAGCCTCCGATTTCTCTACT 59.589 52.381 0.00 0.00 0.00 2.57
808 841 1.364901 CACACAAAGCAAGCAGGGG 59.635 57.895 0.00 0.00 0.00 4.79
810 843 0.872881 GCACACACAAAGCAAGCAGG 60.873 55.000 0.00 0.00 0.00 4.85
811 844 1.204228 CGCACACACAAAGCAAGCAG 61.204 55.000 0.00 0.00 0.00 4.24
818 855 1.586042 GCACCACGCACACACAAAG 60.586 57.895 0.00 0.00 41.79 2.77
859 896 3.400007 GATTCGACCGAAGCTGCC 58.600 61.111 12.40 0.00 37.52 4.85
863 900 2.673368 ACAAATCAGATTCGACCGAAGC 59.327 45.455 11.84 11.84 40.43 3.86
864 901 4.627467 AGAACAAATCAGATTCGACCGAAG 59.373 41.667 10.65 0.00 37.56 3.79
868 905 4.142600 CCCAAGAACAAATCAGATTCGACC 60.143 45.833 0.00 0.00 0.00 4.79
901 951 5.051307 TGAGACATAACAAACAAGAACGACG 60.051 40.000 0.00 0.00 0.00 5.12
902 952 6.127403 GTGAGACATAACAAACAAGAACGAC 58.873 40.000 0.00 0.00 0.00 4.34
903 953 5.051307 CGTGAGACATAACAAACAAGAACGA 60.051 40.000 0.00 0.00 0.00 3.85
904 954 5.051307 TCGTGAGACATAACAAACAAGAACG 60.051 40.000 0.00 0.00 33.31 3.95
905 955 6.281848 TCGTGAGACATAACAAACAAGAAC 57.718 37.500 0.00 0.00 33.31 3.01
906 956 5.465390 CCTCGTGAGACATAACAAACAAGAA 59.535 40.000 0.00 0.00 35.39 2.52
907 957 4.988540 CCTCGTGAGACATAACAAACAAGA 59.011 41.667 0.00 0.00 35.39 3.02
908 958 4.750098 ACCTCGTGAGACATAACAAACAAG 59.250 41.667 0.00 0.00 35.39 3.16
909 959 4.699637 ACCTCGTGAGACATAACAAACAA 58.300 39.130 0.00 0.00 35.39 2.83
910 960 4.330944 ACCTCGTGAGACATAACAAACA 57.669 40.909 0.00 0.00 35.39 2.83
911 961 5.440685 CAAACCTCGTGAGACATAACAAAC 58.559 41.667 0.00 0.00 35.39 2.93
912 962 4.024387 GCAAACCTCGTGAGACATAACAAA 60.024 41.667 0.00 0.00 35.39 2.83
920 970 1.300697 ACGGCAAACCTCGTGAGAC 60.301 57.895 0.00 0.00 38.25 3.36
950 1000 1.028905 ATCACCACCAACAACAACGG 58.971 50.000 0.00 0.00 0.00 4.44
951 1001 2.159310 ACAATCACCACCAACAACAACG 60.159 45.455 0.00 0.00 0.00 4.10
953 1003 2.417924 GCACAATCACCACCAACAACAA 60.418 45.455 0.00 0.00 0.00 2.83
975 1025 0.810031 CCGAATCTTACCCCTGCACG 60.810 60.000 0.00 0.00 0.00 5.34
1287 1340 9.997482 GCTTGATCGGTTTTTAAAGATTGTATA 57.003 29.630 0.00 0.00 0.00 1.47
1332 1385 4.193826 TCAGAGAAGTCGGAAATCTTGG 57.806 45.455 0.00 0.00 0.00 3.61
1832 1887 3.260205 AGAAAGGAACATCCCTCCTGAA 58.740 45.455 0.00 0.00 42.77 3.02
1886 1941 1.649321 TGATTCTCCAGTCAGGCTGT 58.351 50.000 15.27 0.00 43.55 4.40
2006 2061 1.597854 CAACACTCGCTTGGCCTCA 60.598 57.895 3.32 0.00 0.00 3.86
2090 2145 1.197721 CATCGGAGATTTTATGCCCGC 59.802 52.381 0.00 0.00 45.12 6.13
2092 2147 4.583871 AGATCATCGGAGATTTTATGCCC 58.416 43.478 0.00 0.00 45.12 5.36
2672 2727 3.465832 TCTTCCCACACCACCCATTATA 58.534 45.455 0.00 0.00 0.00 0.98
3125 3180 7.368059 AGCAGTGCATACATTGATGATATTTG 58.632 34.615 19.20 0.00 35.63 2.32
3130 3185 6.017357 CACTTAGCAGTGCATACATTGATGAT 60.017 38.462 19.20 0.00 44.16 2.45
3131 3186 5.295045 CACTTAGCAGTGCATACATTGATGA 59.705 40.000 19.20 0.00 44.16 2.92
3132 3187 5.507974 CACTTAGCAGTGCATACATTGATG 58.492 41.667 19.20 0.00 44.16 3.07
3323 3379 2.734755 ACCATAGGCAGCAAAGCATA 57.265 45.000 0.00 0.00 35.06 3.14
3353 3409 7.168219 TCAGAAAACTACAGCAACCTGATATT 58.832 34.615 0.00 0.00 41.77 1.28
3551 3608 2.178106 TCCAAACCAAAGGAGGCCTAAA 59.822 45.455 4.42 0.00 31.13 1.85
3552 3609 1.783979 TCCAAACCAAAGGAGGCCTAA 59.216 47.619 4.42 0.00 31.13 2.69
3553 3610 1.354368 CTCCAAACCAAAGGAGGCCTA 59.646 52.381 4.42 0.00 46.11 3.93
3554 3611 0.113190 CTCCAAACCAAAGGAGGCCT 59.887 55.000 3.86 3.86 46.11 5.19
3555 3612 2.658548 CTCCAAACCAAAGGAGGCC 58.341 57.895 0.00 0.00 46.11 5.19
3559 3616 4.551671 TGAAATTCCTCCAAACCAAAGGA 58.448 39.130 0.00 0.00 37.42 3.36
3560 3617 4.953940 TGAAATTCCTCCAAACCAAAGG 57.046 40.909 0.00 0.00 0.00 3.11
3561 3618 6.437162 TCCTATGAAATTCCTCCAAACCAAAG 59.563 38.462 0.00 0.00 0.00 2.77
3562 3619 6.318913 TCCTATGAAATTCCTCCAAACCAAA 58.681 36.000 0.00 0.00 0.00 3.28
3563 3620 5.898120 TCCTATGAAATTCCTCCAAACCAA 58.102 37.500 0.00 0.00 0.00 3.67
3564 3621 5.528600 TCCTATGAAATTCCTCCAAACCA 57.471 39.130 0.00 0.00 0.00 3.67
3565 3622 7.343057 AGAATTCCTATGAAATTCCTCCAAACC 59.657 37.037 0.65 0.00 33.32 3.27
3566 3623 8.298729 AGAATTCCTATGAAATTCCTCCAAAC 57.701 34.615 0.65 0.00 33.32 2.93
3567 3624 9.632638 CTAGAATTCCTATGAAATTCCTCCAAA 57.367 33.333 0.65 0.00 33.32 3.28
3568 3625 9.003145 TCTAGAATTCCTATGAAATTCCTCCAA 57.997 33.333 0.65 0.00 33.32 3.53
3569 3626 8.567198 TCTAGAATTCCTATGAAATTCCTCCA 57.433 34.615 0.65 0.00 33.32 3.86
3570 3627 8.100164 CCTCTAGAATTCCTATGAAATTCCTCC 58.900 40.741 0.65 0.00 33.32 4.30
3571 3628 8.875168 TCCTCTAGAATTCCTATGAAATTCCTC 58.125 37.037 0.65 0.00 33.32 3.71
3572 3629 8.805145 TCCTCTAGAATTCCTATGAAATTCCT 57.195 34.615 0.65 0.00 33.32 3.36
3579 3636 9.707957 GAATCCTATCCTCTAGAATTCCTATGA 57.292 37.037 0.65 0.00 0.00 2.15
3580 3637 9.713684 AGAATCCTATCCTCTAGAATTCCTATG 57.286 37.037 0.65 0.00 0.00 2.23
3615 3672 4.552674 ACCAAAGGGCTCTAAAGGAAAAA 58.447 39.130 5.94 0.00 37.90 1.94
3616 3673 4.193240 ACCAAAGGGCTCTAAAGGAAAA 57.807 40.909 5.94 0.00 37.90 2.29
3617 3674 3.895704 ACCAAAGGGCTCTAAAGGAAA 57.104 42.857 5.94 0.00 37.90 3.13
3618 3675 3.139397 TGAACCAAAGGGCTCTAAAGGAA 59.861 43.478 5.94 0.00 37.90 3.36
3619 3676 2.714250 TGAACCAAAGGGCTCTAAAGGA 59.286 45.455 5.94 0.00 37.90 3.36
3620 3677 3.154827 TGAACCAAAGGGCTCTAAAGG 57.845 47.619 0.00 0.00 37.90 3.11
3621 3678 4.884164 CCTATGAACCAAAGGGCTCTAAAG 59.116 45.833 0.00 0.00 37.90 1.85
3622 3679 4.538490 TCCTATGAACCAAAGGGCTCTAAA 59.462 41.667 0.00 0.00 37.90 1.85
3623 3680 4.108570 TCCTATGAACCAAAGGGCTCTAA 58.891 43.478 0.00 0.00 37.90 2.10
3624 3681 3.731431 TCCTATGAACCAAAGGGCTCTA 58.269 45.455 0.00 0.00 37.90 2.43
3625 3682 2.562296 TCCTATGAACCAAAGGGCTCT 58.438 47.619 0.00 0.00 37.90 4.09
3626 3683 3.366052 TTCCTATGAACCAAAGGGCTC 57.634 47.619 0.00 0.00 37.90 4.70
3627 3684 3.628257 CCATTCCTATGAACCAAAGGGCT 60.628 47.826 0.00 0.00 33.50 5.19
3628 3685 2.695147 CCATTCCTATGAACCAAAGGGC 59.305 50.000 0.00 0.00 33.50 5.19
3629 3686 4.249638 TCCATTCCTATGAACCAAAGGG 57.750 45.455 0.00 0.00 35.37 3.95
3630 3687 6.396829 GAATCCATTCCTATGAACCAAAGG 57.603 41.667 0.00 0.00 33.37 3.11
3668 3725 7.461749 TGAAATATGGAGGATAGGAACCAATC 58.538 38.462 0.00 0.00 36.00 2.67
3669 3726 7.406620 TGAAATATGGAGGATAGGAACCAAT 57.593 36.000 0.00 0.00 36.00 3.16
3670 3727 6.840090 TGAAATATGGAGGATAGGAACCAA 57.160 37.500 0.00 0.00 36.00 3.67
3671 3728 7.182749 CCTATGAAATATGGAGGATAGGAACCA 59.817 40.741 0.00 0.00 36.16 3.67
3672 3729 7.403231 TCCTATGAAATATGGAGGATAGGAACC 59.597 40.741 0.00 0.00 38.86 3.62
3673 3730 8.380742 TCCTATGAAATATGGAGGATAGGAAC 57.619 38.462 0.00 0.00 38.86 3.62
3674 3731 8.989045 TTCCTATGAAATATGGAGGATAGGAA 57.011 34.615 12.28 12.28 44.60 3.36
3675 3732 8.989045 TTTCCTATGAAATATGGAGGATAGGA 57.011 34.615 0.00 0.00 39.66 2.94
3694 3751 9.614792 GAGTCTAGGCTCATTTTTATTTTCCTA 57.385 33.333 19.57 0.00 35.67 2.94
3695 3752 8.109634 TGAGTCTAGGCTCATTTTTATTTTCCT 58.890 33.333 23.07 0.00 40.23 3.36
3696 3753 8.281212 TGAGTCTAGGCTCATTTTTATTTTCC 57.719 34.615 23.07 0.00 40.23 3.13
3699 3756 8.689972 CCATTGAGTCTAGGCTCATTTTTATTT 58.310 33.333 26.91 3.37 43.99 1.40
3700 3757 8.055181 TCCATTGAGTCTAGGCTCATTTTTATT 58.945 33.333 26.91 4.66 43.99 1.40
3701 3758 7.577303 TCCATTGAGTCTAGGCTCATTTTTAT 58.423 34.615 26.91 14.49 43.99 1.40
3702 3759 6.957631 TCCATTGAGTCTAGGCTCATTTTTA 58.042 36.000 26.91 12.75 43.99 1.52
3703 3760 5.819991 TCCATTGAGTCTAGGCTCATTTTT 58.180 37.500 26.91 10.30 43.99 1.94
3704 3761 5.441718 TCCATTGAGTCTAGGCTCATTTT 57.558 39.130 26.91 12.69 43.99 1.82
3705 3762 5.441718 TTCCATTGAGTCTAGGCTCATTT 57.558 39.130 26.91 15.12 43.99 2.32
3706 3763 5.441718 TTTCCATTGAGTCTAGGCTCATT 57.558 39.130 26.91 20.33 43.99 2.57
3707 3764 5.441718 TTTTCCATTGAGTCTAGGCTCAT 57.558 39.130 26.91 14.39 43.99 2.90
3708 3765 4.908601 TTTTCCATTGAGTCTAGGCTCA 57.091 40.909 23.07 23.07 43.03 4.26
3709 3766 6.765915 AATTTTTCCATTGAGTCTAGGCTC 57.234 37.500 17.74 17.74 36.12 4.70
3710 3767 6.765915 GAATTTTTCCATTGAGTCTAGGCT 57.234 37.500 0.00 0.00 0.00 4.58
3721 3778 8.334633 GGTTGACACCAAAGGAATTTTTCCATT 61.335 37.037 8.87 0.31 46.88 3.16
3722 3779 6.911529 GGTTGACACCAAAGGAATTTTTCCAT 60.912 38.462 8.87 0.00 46.88 3.41
3723 3780 5.627968 GGTTGACACCAAAGGAATTTTTCCA 60.628 40.000 8.87 0.00 46.88 3.53
3724 3781 4.814234 GGTTGACACCAAAGGAATTTTTCC 59.186 41.667 0.00 0.00 45.80 3.13
3725 3782 5.984233 GGTTGACACCAAAGGAATTTTTC 57.016 39.130 0.00 0.00 43.61 2.29
3741 3798 4.749245 AACGAGATGTCATTTGGTTGAC 57.251 40.909 3.39 0.00 45.05 3.18
3742 3799 4.215399 GGAAACGAGATGTCATTTGGTTGA 59.785 41.667 4.80 0.00 0.00 3.18
3743 3800 4.216257 AGGAAACGAGATGTCATTTGGTTG 59.784 41.667 4.80 0.00 0.00 3.77
3744 3801 4.398319 AGGAAACGAGATGTCATTTGGTT 58.602 39.130 0.00 0.00 0.00 3.67
3745 3802 4.021102 AGGAAACGAGATGTCATTTGGT 57.979 40.909 0.00 0.00 0.00 3.67
3746 3803 6.238484 GGAATAGGAAACGAGATGTCATTTGG 60.238 42.308 0.00 0.00 0.00 3.28
3747 3804 6.540189 AGGAATAGGAAACGAGATGTCATTTG 59.460 38.462 0.00 0.00 0.00 2.32
3748 3805 6.653989 AGGAATAGGAAACGAGATGTCATTT 58.346 36.000 0.00 0.00 0.00 2.32
3749 3806 6.240549 AGGAATAGGAAACGAGATGTCATT 57.759 37.500 0.00 0.00 0.00 2.57
3750 3807 5.878406 AGGAATAGGAAACGAGATGTCAT 57.122 39.130 0.00 0.00 0.00 3.06
3751 3808 5.892119 AGTAGGAATAGGAAACGAGATGTCA 59.108 40.000 0.00 0.00 0.00 3.58
3752 3809 6.039493 TGAGTAGGAATAGGAAACGAGATGTC 59.961 42.308 0.00 0.00 0.00 3.06
3753 3810 5.892119 TGAGTAGGAATAGGAAACGAGATGT 59.108 40.000 0.00 0.00 0.00 3.06
3754 3811 6.392625 TGAGTAGGAATAGGAAACGAGATG 57.607 41.667 0.00 0.00 0.00 2.90
3755 3812 8.343168 CTATGAGTAGGAATAGGAAACGAGAT 57.657 38.462 0.00 0.00 0.00 2.75
3756 3813 7.747155 CTATGAGTAGGAATAGGAAACGAGA 57.253 40.000 0.00 0.00 0.00 4.04
3794 3851 9.753674 AGGAATTTTGTAGGAAATAAGATGACA 57.246 29.630 0.00 0.00 0.00 3.58
3803 3860 9.338622 CGTAGGAATAGGAATTTTGTAGGAAAT 57.661 33.333 0.00 0.00 0.00 2.17
3804 3861 8.542080 TCGTAGGAATAGGAATTTTGTAGGAAA 58.458 33.333 0.00 0.00 0.00 3.13
3805 3862 8.081517 TCGTAGGAATAGGAATTTTGTAGGAA 57.918 34.615 0.00 0.00 0.00 3.36
3806 3863 7.664552 TCGTAGGAATAGGAATTTTGTAGGA 57.335 36.000 0.00 0.00 0.00 2.94
3807 3864 9.991906 TTATCGTAGGAATAGGAATTTTGTAGG 57.008 33.333 0.00 0.00 0.00 3.18
3810 3867 9.117183 GGTTTATCGTAGGAATAGGAATTTTGT 57.883 33.333 0.00 0.00 0.00 2.83
3811 3868 9.338622 AGGTTTATCGTAGGAATAGGAATTTTG 57.661 33.333 0.00 0.00 0.00 2.44
3815 3872 8.979534 GGATAGGTTTATCGTAGGAATAGGAAT 58.020 37.037 0.00 0.00 37.20 3.01
3816 3873 8.175431 AGGATAGGTTTATCGTAGGAATAGGAA 58.825 37.037 0.00 0.00 37.20 3.36
3817 3874 7.706674 AGGATAGGTTTATCGTAGGAATAGGA 58.293 38.462 0.00 0.00 37.20 2.94
3818 3875 7.957992 AGGATAGGTTTATCGTAGGAATAGG 57.042 40.000 0.00 0.00 37.20 2.57
3821 3878 9.543231 TTCATAGGATAGGTTTATCGTAGGAAT 57.457 33.333 14.87 0.00 44.20 3.01
3822 3879 8.800332 GTTCATAGGATAGGTTTATCGTAGGAA 58.200 37.037 14.87 14.87 45.40 3.36
3823 3880 7.395489 GGTTCATAGGATAGGTTTATCGTAGGA 59.605 40.741 7.24 7.24 41.67 2.94
3824 3881 7.177921 TGGTTCATAGGATAGGTTTATCGTAGG 59.822 40.741 3.78 3.78 39.00 3.18
3825 3882 8.118976 TGGTTCATAGGATAGGTTTATCGTAG 57.881 38.462 4.11 0.00 39.00 3.51
3826 3883 8.481492 TTGGTTCATAGGATAGGTTTATCGTA 57.519 34.615 1.03 1.03 39.58 3.43
3827 3884 6.989155 TGGTTCATAGGATAGGTTTATCGT 57.011 37.500 0.00 0.00 37.20 3.73
3828 3885 8.671384 TTTTGGTTCATAGGATAGGTTTATCG 57.329 34.615 0.00 0.00 37.20 2.92
3829 3886 9.847224 TCTTTTGGTTCATAGGATAGGTTTATC 57.153 33.333 0.00 0.00 35.87 1.75
3830 3887 9.853177 CTCTTTTGGTTCATAGGATAGGTTTAT 57.147 33.333 0.00 0.00 0.00 1.40
3831 3888 8.272173 CCTCTTTTGGTTCATAGGATAGGTTTA 58.728 37.037 0.00 0.00 0.00 2.01
3832 3889 7.119387 CCTCTTTTGGTTCATAGGATAGGTTT 58.881 38.462 0.00 0.00 0.00 3.27
3833 3890 6.663734 CCTCTTTTGGTTCATAGGATAGGTT 58.336 40.000 0.00 0.00 0.00 3.50
3834 3891 5.398012 GCCTCTTTTGGTTCATAGGATAGGT 60.398 44.000 0.00 0.00 0.00 3.08
3835 3892 5.066593 GCCTCTTTTGGTTCATAGGATAGG 58.933 45.833 0.00 0.00 0.00 2.57
3836 3893 5.066593 GGCCTCTTTTGGTTCATAGGATAG 58.933 45.833 0.00 0.00 0.00 2.08
3837 3894 4.726825 AGGCCTCTTTTGGTTCATAGGATA 59.273 41.667 0.00 0.00 0.00 2.59
3838 3895 3.529319 AGGCCTCTTTTGGTTCATAGGAT 59.471 43.478 0.00 0.00 0.00 3.24
3839 3896 2.919602 AGGCCTCTTTTGGTTCATAGGA 59.080 45.455 0.00 0.00 0.00 2.94
3840 3897 3.372440 AGGCCTCTTTTGGTTCATAGG 57.628 47.619 0.00 0.00 0.00 2.57
3841 3898 6.378280 ACAATAAGGCCTCTTTTGGTTCATAG 59.622 38.462 20.26 2.37 34.59 2.23
3842 3899 6.252995 ACAATAAGGCCTCTTTTGGTTCATA 58.747 36.000 20.26 1.87 34.59 2.15
3843 3900 5.086621 ACAATAAGGCCTCTTTTGGTTCAT 58.913 37.500 20.26 0.00 34.59 2.57
3844 3901 4.479158 ACAATAAGGCCTCTTTTGGTTCA 58.521 39.130 20.26 0.00 34.59 3.18
3845 3902 5.221441 ACAACAATAAGGCCTCTTTTGGTTC 60.221 40.000 20.26 0.00 34.59 3.62
3846 3903 4.653801 ACAACAATAAGGCCTCTTTTGGTT 59.346 37.500 20.26 12.25 34.59 3.67
3847 3904 4.039124 CACAACAATAAGGCCTCTTTTGGT 59.961 41.667 20.26 14.33 34.59 3.67
3848 3905 4.039124 ACACAACAATAAGGCCTCTTTTGG 59.961 41.667 20.26 6.99 34.59 3.28
3849 3906 5.200368 ACACAACAATAAGGCCTCTTTTG 57.800 39.130 5.23 13.04 34.59 2.44
3850 3907 6.071391 CCATACACAACAATAAGGCCTCTTTT 60.071 38.462 5.23 0.00 34.59 2.27
3851 3908 5.418840 CCATACACAACAATAAGGCCTCTTT 59.581 40.000 5.23 0.00 34.59 2.52
3852 3909 4.949856 CCATACACAACAATAAGGCCTCTT 59.050 41.667 5.23 0.00 37.03 2.85
3853 3910 4.018415 ACCATACACAACAATAAGGCCTCT 60.018 41.667 5.23 0.00 0.00 3.69
3854 3911 4.270008 ACCATACACAACAATAAGGCCTC 58.730 43.478 5.23 0.00 0.00 4.70
3855 3912 4.316025 ACCATACACAACAATAAGGCCT 57.684 40.909 0.00 0.00 0.00 5.19
3856 3913 4.219725 ACAACCATACACAACAATAAGGCC 59.780 41.667 0.00 0.00 0.00 5.19
3857 3914 5.385509 ACAACCATACACAACAATAAGGC 57.614 39.130 0.00 0.00 0.00 4.35
3858 3915 6.551736 GCTACAACCATACACAACAATAAGG 58.448 40.000 0.00 0.00 0.00 2.69
3973 4030 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
3974 4031 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
3975 4032 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3976 4033 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
3977 4034 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3978 4035 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3979 4036 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3980 4037 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3981 4038 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3982 4039 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3983 4040 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3984 4041 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3985 4042 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3986 4043 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
3987 4044 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
3995 4052 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
3996 4053 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
3998 4055 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
3999 4056 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
4008 4065 9.825109 TGATTTGATACATCCGTATTTAGACAA 57.175 29.630 0.00 0.00 38.48 3.18
4009 4066 9.996554 ATGATTTGATACATCCGTATTTAGACA 57.003 29.630 0.00 0.00 38.48 3.41
4011 4068 9.996554 ACATGATTTGATACATCCGTATTTAGA 57.003 29.630 0.00 0.00 38.48 2.10
4017 4074 9.607988 ACTAAAACATGATTTGATACATCCGTA 57.392 29.630 10.92 0.00 0.00 4.02
4018 4075 8.506168 ACTAAAACATGATTTGATACATCCGT 57.494 30.769 10.92 0.00 0.00 4.69
4051 4108 8.952278 GTCTTAGATTCATCTAGATACGGATGT 58.048 37.037 4.54 0.00 40.23 3.06
4052 4109 8.951243 TGTCTTAGATTCATCTAGATACGGATG 58.049 37.037 4.54 0.00 40.23 3.51
4053 4110 9.521841 TTGTCTTAGATTCATCTAGATACGGAT 57.478 33.333 4.54 0.00 40.23 4.18
4054 4111 8.919777 TTGTCTTAGATTCATCTAGATACGGA 57.080 34.615 4.54 0.00 40.23 4.69
4055 4112 9.004717 TCTTGTCTTAGATTCATCTAGATACGG 57.995 37.037 4.54 0.00 40.23 4.02
4066 4123 8.712363 CGTCTCAAAATTCTTGTCTTAGATTCA 58.288 33.333 0.00 0.00 0.00 2.57
4067 4124 8.171840 CCGTCTCAAAATTCTTGTCTTAGATTC 58.828 37.037 0.00 0.00 0.00 2.52
4068 4125 7.878127 TCCGTCTCAAAATTCTTGTCTTAGATT 59.122 33.333 0.00 0.00 0.00 2.40
4069 4126 7.386851 TCCGTCTCAAAATTCTTGTCTTAGAT 58.613 34.615 0.00 0.00 0.00 1.98
4070 4127 6.755206 TCCGTCTCAAAATTCTTGTCTTAGA 58.245 36.000 0.00 0.00 0.00 2.10
4071 4128 6.091441 CCTCCGTCTCAAAATTCTTGTCTTAG 59.909 42.308 0.00 0.00 0.00 2.18
4072 4129 5.932303 CCTCCGTCTCAAAATTCTTGTCTTA 59.068 40.000 0.00 0.00 0.00 2.10
4073 4130 4.757149 CCTCCGTCTCAAAATTCTTGTCTT 59.243 41.667 0.00 0.00 0.00 3.01
4074 4131 4.319177 CCTCCGTCTCAAAATTCTTGTCT 58.681 43.478 0.00 0.00 0.00 3.41
4075 4132 3.437049 CCCTCCGTCTCAAAATTCTTGTC 59.563 47.826 0.00 0.00 0.00 3.18
4076 4133 3.072476 TCCCTCCGTCTCAAAATTCTTGT 59.928 43.478 0.00 0.00 0.00 3.16
4077 4134 3.674997 TCCCTCCGTCTCAAAATTCTTG 58.325 45.455 0.00 0.00 0.00 3.02
4078 4135 3.328050 ACTCCCTCCGTCTCAAAATTCTT 59.672 43.478 0.00 0.00 0.00 2.52
4079 4136 2.907042 ACTCCCTCCGTCTCAAAATTCT 59.093 45.455 0.00 0.00 0.00 2.40
4080 4137 3.336138 ACTCCCTCCGTCTCAAAATTC 57.664 47.619 0.00 0.00 0.00 2.17
4081 4138 3.055312 GGTACTCCCTCCGTCTCAAAATT 60.055 47.826 0.00 0.00 0.00 1.82
4082 4139 2.500504 GGTACTCCCTCCGTCTCAAAAT 59.499 50.000 0.00 0.00 0.00 1.82
4083 4140 1.897802 GGTACTCCCTCCGTCTCAAAA 59.102 52.381 0.00 0.00 0.00 2.44
4084 4141 1.076677 AGGTACTCCCTCCGTCTCAAA 59.923 52.381 0.00 0.00 40.71 2.69
4085 4142 0.702902 AGGTACTCCCTCCGTCTCAA 59.297 55.000 0.00 0.00 40.71 3.02
4086 4143 1.588239 TAGGTACTCCCTCCGTCTCA 58.412 55.000 0.00 0.00 44.81 3.27
4087 4144 2.725221 TTAGGTACTCCCTCCGTCTC 57.275 55.000 0.00 0.00 44.81 3.36
4088 4145 3.684408 ATTTAGGTACTCCCTCCGTCT 57.316 47.619 0.00 0.00 44.81 4.18
4089 4146 4.210331 TGTATTTAGGTACTCCCTCCGTC 58.790 47.826 0.00 0.00 44.81 4.79
4090 4147 4.255510 TGTATTTAGGTACTCCCTCCGT 57.744 45.455 0.00 0.00 44.81 4.69
4091 4148 8.763984 ATATATGTATTTAGGTACTCCCTCCG 57.236 38.462 0.00 0.00 44.81 4.63
4093 4150 9.819267 GCAATATATGTATTTAGGTACTCCCTC 57.181 37.037 0.00 0.00 44.81 4.30
4160 4217 1.405105 CCATTGATACCCGCAAACTGG 59.595 52.381 0.00 0.00 0.00 4.00
4531 4588 2.983030 GCGTGCACCATGGTTCCA 60.983 61.111 16.84 12.90 0.00 3.53
5184 5241 2.154798 CTGAACCGACCGAGCAAGGA 62.155 60.000 4.39 0.00 34.73 3.36
5305 5395 2.560542 TGGTTGTGTGCATATTTCCCAC 59.439 45.455 0.00 0.00 0.00 4.61
5626 5728 2.861147 AACAAGTGGTAGAAGGAGGC 57.139 50.000 0.00 0.00 0.00 4.70
5671 5773 5.914033 AGAAGTTTTGCTTAAGGGTTTTCC 58.086 37.500 4.29 0.00 37.59 3.13
5685 5790 9.546428 AATTGGGATTTTCTACAAGAAGTTTTG 57.454 29.630 0.00 0.00 35.37 2.44
5691 5796 6.210584 GGGTGAATTGGGATTTTCTACAAGAA 59.789 38.462 0.00 0.00 31.28 2.52
5732 5837 1.132495 AGGAGGGGGTCACACTAAAGT 60.132 52.381 0.00 0.00 0.00 2.66
5751 5856 5.126222 TCATGAGCTTAGAAGGACTACACAG 59.874 44.000 0.00 0.00 0.00 3.66
5755 5860 6.311690 GTGTTTCATGAGCTTAGAAGGACTAC 59.688 42.308 0.00 0.00 0.00 2.73
5785 5890 5.966742 TTAGATGAGATGGTCACTATCCG 57.033 43.478 0.00 0.00 38.28 4.18
5826 5931 2.360165 AGCCATCTTTCATTCGGCATTC 59.640 45.455 0.00 0.00 45.47 2.67
5850 5955 4.144731 GTGAAATTCGTTGCTTGTTCTTCG 59.855 41.667 0.00 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.