Multiple sequence alignment - TraesCS1D01G204800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G204800 chr1D 100.000 4430 0 0 1 4430 289959895 289964324 0.000000e+00 8181.0
1 TraesCS1D01G204800 chr1D 91.156 294 25 1 3757 4049 125746768 125746475 8.930000e-107 398.0
2 TraesCS1D01G204800 chr1D 86.577 298 32 6 4139 4430 416854097 416854392 5.530000e-84 322.0
3 TraesCS1D01G204800 chr1B 96.676 3761 106 11 10 3757 391267366 391271120 0.000000e+00 6235.0
4 TraesCS1D01G204800 chr1A 95.704 3492 104 14 1 3475 362402138 362405600 0.000000e+00 5576.0
5 TraesCS1D01G204800 chr1A 91.156 294 24 1 3757 4048 518455953 518455660 8.930000e-107 398.0
6 TraesCS1D01G204800 chr1A 88.646 229 17 7 3470 3689 362405641 362405869 2.030000e-68 270.0
7 TraesCS1D01G204800 chr1A 97.059 34 1 0 3702 3735 362406235 362406268 1.720000e-04 58.4
8 TraesCS1D01G204800 chr3D 92.657 286 21 0 3757 4042 255424678 255424393 3.190000e-111 412.0
9 TraesCS1D01G204800 chr6D 91.246 297 24 2 3757 4052 327022155 327021860 1.920000e-108 403.0
10 TraesCS1D01G204800 chr6D 90.323 248 18 6 4147 4392 409653873 409653630 1.990000e-83 320.0
11 TraesCS1D01G204800 chr6D 93.103 58 3 1 4091 4147 34337855 34337912 2.840000e-12 84.2
12 TraesCS1D01G204800 chr3A 91.497 294 22 3 3757 4047 319962599 319962306 6.900000e-108 401.0
13 TraesCS1D01G204800 chr2D 91.438 292 25 0 3757 4048 325807605 325807314 6.900000e-108 401.0
14 TraesCS1D01G204800 chr2D 93.103 58 3 1 4091 4147 355319576 355319519 2.840000e-12 84.2
15 TraesCS1D01G204800 chr2D 93.103 58 3 1 4091 4147 531176920 531176977 2.840000e-12 84.2
16 TraesCS1D01G204800 chr3B 91.958 286 22 1 3757 4042 377115405 377115121 2.480000e-107 399.0
17 TraesCS1D01G204800 chr7B 90.635 299 26 2 3746 4044 378382469 378382765 3.210000e-106 396.0
18 TraesCS1D01G204800 chr7B 89.683 252 24 2 4149 4400 589134818 589135067 1.990000e-83 320.0
19 TraesCS1D01G204800 chr2A 90.604 298 27 1 3746 4042 561298743 561299040 1.150000e-105 394.0
20 TraesCS1D01G204800 chr2A 88.153 287 27 5 4149 4430 510297473 510297757 7.100000e-88 335.0
21 TraesCS1D01G204800 chr2A 93.103 58 3 1 4091 4147 502835039 502834982 2.840000e-12 84.2
22 TraesCS1D01G204800 chr2A 93.103 58 3 1 4091 4147 675390253 675390310 2.840000e-12 84.2
23 TraesCS1D01G204800 chr7D 90.102 293 23 5 4143 4430 65771589 65771880 4.180000e-100 375.0
24 TraesCS1D01G204800 chr7D 90.000 290 21 5 4146 4430 569042249 569042535 7.000000e-98 368.0
25 TraesCS1D01G204800 chr7D 85.714 287 34 6 4146 4429 438062070 438062352 3.350000e-76 296.0
26 TraesCS1D01G204800 chr7D 93.103 58 3 1 4091 4147 26561760 26561703 2.840000e-12 84.2
27 TraesCS1D01G204800 chr4A 88.621 290 28 3 4146 4430 621682706 621682995 9.120000e-92 348.0
28 TraesCS1D01G204800 chr4B 87.762 286 29 6 4149 4430 173177183 173177466 3.300000e-86 329.0
29 TraesCS1D01G204800 chr4D 93.103 58 2 2 4080 4136 35484975 35485031 2.840000e-12 84.2
30 TraesCS1D01G204800 chr4D 97.917 48 1 0 4090 4137 439770758 439770711 2.840000e-12 84.2
31 TraesCS1D01G204800 chr5D 90.323 62 5 1 4087 4147 133319930 133319991 3.670000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G204800 chr1D 289959895 289964324 4429 False 8181.000000 8181 100.000 1 4430 1 chr1D.!!$F1 4429
1 TraesCS1D01G204800 chr1B 391267366 391271120 3754 False 6235.000000 6235 96.676 10 3757 1 chr1B.!!$F1 3747
2 TraesCS1D01G204800 chr1A 362402138 362406268 4130 False 1968.133333 5576 93.803 1 3735 3 chr1A.!!$F1 3734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
941 955 1.136891 GAAAAGCTTGGCAAGGTGTGT 59.863 47.619 30.33 18.81 39.57 3.72 F
952 966 1.876799 CAAGGTGTGTGCGGAATTGTA 59.123 47.619 0.00 0.00 0.00 2.41 F
1041 1058 1.935327 GCGGTCTCAGCGACTACCTT 61.935 60.000 0.00 0.00 42.41 3.50 F
1656 1679 2.126812 GTCGACGTGAGCTCGCTT 60.127 61.111 24.01 15.94 35.59 4.68 F
2481 2510 2.125147 GTGCTCGCCATGCAGGTA 60.125 61.111 0.00 0.00 41.41 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2220 2249 0.031314 TCTCTTCATCCGCATCGAGC 59.969 55.000 0.00 0.0 40.87 5.03 R
2256 2285 1.107114 CTGCCTCGAGCTTCCTAAGA 58.893 55.000 6.99 0.0 44.23 2.10 R
2310 2339 2.349590 TCGCTTGATCTTGGTGTCATG 58.650 47.619 0.00 0.0 0.00 3.07 R
2856 2885 2.580470 GATCATGAGCGCGTCCACG 61.580 63.158 8.43 0.0 43.27 4.94 R
4248 4685 0.107017 CAGGAGGCGATGGTCCAAAT 60.107 55.000 0.00 0.0 35.02 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 5.570344 CATGCTCTTTGAAGTGATTAGCAG 58.430 41.667 9.12 1.18 41.33 4.24
99 100 5.412594 CGTTCTTCTTTGGATCAAATCTCCA 59.587 40.000 0.00 0.00 41.03 3.86
232 233 8.883731 CGGTCTAATCAATCAATCAAACTAACT 58.116 33.333 0.00 0.00 0.00 2.24
296 300 2.281761 CCACCACACACTGCTCCC 60.282 66.667 0.00 0.00 0.00 4.30
572 583 1.202065 CGCCGGATCACATCAACTTTG 60.202 52.381 5.05 0.00 0.00 2.77
892 906 2.948840 CTATCGCGGTCCACGGTTCC 62.949 65.000 6.13 0.00 44.51 3.62
896 910 2.109387 CGGTCCACGGTTCCACAA 59.891 61.111 0.00 0.00 39.42 3.33
941 955 1.136891 GAAAAGCTTGGCAAGGTGTGT 59.863 47.619 30.33 18.81 39.57 3.72
952 966 1.876799 CAAGGTGTGTGCGGAATTGTA 59.123 47.619 0.00 0.00 0.00 2.41
978 992 2.124653 GGTCGAGGAGGAGAGCGA 60.125 66.667 0.00 0.00 0.00 4.93
1017 1034 4.414956 ATGGCCGGACTGGGAGGA 62.415 66.667 9.82 0.00 38.63 3.71
1041 1058 1.935327 GCGGTCTCAGCGACTACCTT 61.935 60.000 0.00 0.00 42.41 3.50
1588 1611 4.736896 AGCCTCGCCGGTTCGTTC 62.737 66.667 1.90 0.00 34.25 3.95
1656 1679 2.126812 GTCGACGTGAGCTCGCTT 60.127 61.111 24.01 15.94 35.59 4.68
1662 1685 2.858868 GTGAGCTCGCTTGTGCTG 59.141 61.111 20.07 0.00 42.18 4.41
2256 2285 2.368875 AGAGATGGTGACCGTTGAGTTT 59.631 45.455 0.00 0.00 0.00 2.66
2481 2510 2.125147 GTGCTCGCCATGCAGGTA 60.125 61.111 0.00 0.00 41.41 3.08
3604 3679 7.319646 TGTCAGCATTTAAATGTTACCCATTC 58.680 34.615 25.15 8.76 43.04 2.67
3605 3680 7.178274 TGTCAGCATTTAAATGTTACCCATTCT 59.822 33.333 25.15 10.62 43.04 2.40
3606 3681 8.034804 GTCAGCATTTAAATGTTACCCATTCTT 58.965 33.333 25.15 0.00 43.04 2.52
3742 4179 9.820229 CTTATCACATTTAGCGAAAGTTTTACA 57.180 29.630 0.00 0.00 0.00 2.41
3758 4195 9.767228 AAAGTTTTACAAGTTTTTACCACAACT 57.233 25.926 0.00 0.00 32.45 3.16
3764 4201 9.616156 TTACAAGTTTTTACCACAACTAGATCA 57.384 29.630 0.00 0.00 32.74 2.92
3765 4202 8.514330 ACAAGTTTTTACCACAACTAGATCAA 57.486 30.769 0.00 0.00 32.74 2.57
3766 4203 9.131791 ACAAGTTTTTACCACAACTAGATCAAT 57.868 29.630 0.00 0.00 32.74 2.57
3767 4204 9.398170 CAAGTTTTTACCACAACTAGATCAATG 57.602 33.333 0.00 0.00 32.74 2.82
3768 4205 7.593825 AGTTTTTACCACAACTAGATCAATGC 58.406 34.615 0.00 0.00 31.20 3.56
3769 4206 6.509418 TTTTACCACAACTAGATCAATGCC 57.491 37.500 0.00 0.00 0.00 4.40
3770 4207 3.004752 ACCACAACTAGATCAATGCCC 57.995 47.619 0.00 0.00 0.00 5.36
3771 4208 2.308570 ACCACAACTAGATCAATGCCCA 59.691 45.455 0.00 0.00 0.00 5.36
3772 4209 3.053395 ACCACAACTAGATCAATGCCCAT 60.053 43.478 0.00 0.00 0.00 4.00
3773 4210 3.317149 CCACAACTAGATCAATGCCCATG 59.683 47.826 0.00 0.00 0.00 3.66
3774 4211 2.954318 ACAACTAGATCAATGCCCATGC 59.046 45.455 0.00 0.00 38.26 4.06
3783 4220 2.261981 TGCCCATGCATTGCAACG 59.738 55.556 16.46 9.78 44.23 4.10
3784 4221 2.509786 GCCCATGCATTGCAACGG 60.510 61.111 16.46 17.91 43.62 4.44
3785 4222 2.184836 CCCATGCATTGCAACGGG 59.815 61.111 26.32 26.32 44.76 5.28
3786 4223 3.286407 CCATGCATTGCAACGGGA 58.714 55.556 16.46 0.00 43.62 5.14
3787 4224 1.817881 CCATGCATTGCAACGGGAT 59.182 52.632 16.46 0.49 43.62 3.85
3788 4225 1.031235 CCATGCATTGCAACGGGATA 58.969 50.000 16.46 0.00 43.62 2.59
3789 4226 1.614903 CCATGCATTGCAACGGGATAT 59.385 47.619 16.46 0.00 43.62 1.63
3790 4227 2.819019 CCATGCATTGCAACGGGATATA 59.181 45.455 16.46 0.00 43.62 0.86
3791 4228 3.255395 CCATGCATTGCAACGGGATATAA 59.745 43.478 16.46 0.00 43.62 0.98
3792 4229 4.261952 CCATGCATTGCAACGGGATATAAA 60.262 41.667 16.46 0.00 43.62 1.40
3793 4230 5.472148 CATGCATTGCAACGGGATATAAAT 58.528 37.500 16.46 0.00 43.62 1.40
3794 4231 6.350027 CCATGCATTGCAACGGGATATAAATA 60.350 38.462 16.46 0.00 43.62 1.40
3795 4232 6.832520 TGCATTGCAACGGGATATAAATAT 57.167 33.333 9.33 0.00 34.76 1.28
3796 4233 7.225784 TGCATTGCAACGGGATATAAATATT 57.774 32.000 9.33 0.00 34.76 1.28
3797 4234 7.089538 TGCATTGCAACGGGATATAAATATTG 58.910 34.615 9.33 0.00 34.76 1.90
3798 4235 7.090173 GCATTGCAACGGGATATAAATATTGT 58.910 34.615 0.00 0.00 0.00 2.71
3799 4236 8.240682 GCATTGCAACGGGATATAAATATTGTA 58.759 33.333 0.00 0.00 0.00 2.41
3800 4237 9.773328 CATTGCAACGGGATATAAATATTGTAG 57.227 33.333 0.00 0.00 0.00 2.74
3801 4238 8.911918 TTGCAACGGGATATAAATATTGTAGT 57.088 30.769 0.00 0.00 0.00 2.73
3802 4239 9.999660 TTGCAACGGGATATAAATATTGTAGTA 57.000 29.630 0.00 0.00 0.00 1.82
3825 4262 9.379791 AGTATGTTAGCTTGTAATTTACCTGTC 57.620 33.333 0.00 0.00 0.00 3.51
3826 4263 9.158233 GTATGTTAGCTTGTAATTTACCTGTCA 57.842 33.333 0.00 0.59 0.00 3.58
3827 4264 8.630054 ATGTTAGCTTGTAATTTACCTGTCAA 57.370 30.769 0.00 0.00 0.00 3.18
3828 4265 8.630054 TGTTAGCTTGTAATTTACCTGTCAAT 57.370 30.769 0.00 0.00 0.00 2.57
3829 4266 9.727859 TGTTAGCTTGTAATTTACCTGTCAATA 57.272 29.630 0.00 0.00 0.00 1.90
3841 4278 9.897744 ATTTACCTGTCAATAATAATGCGATTG 57.102 29.630 0.00 0.00 32.85 2.67
3842 4279 6.942532 ACCTGTCAATAATAATGCGATTGT 57.057 33.333 0.00 0.00 33.27 2.71
3843 4280 6.728200 ACCTGTCAATAATAATGCGATTGTG 58.272 36.000 0.00 0.00 33.27 3.33
3844 4281 6.318648 ACCTGTCAATAATAATGCGATTGTGT 59.681 34.615 0.00 0.00 33.27 3.72
3845 4282 7.497579 ACCTGTCAATAATAATGCGATTGTGTA 59.502 33.333 0.00 0.00 33.27 2.90
3846 4283 8.341903 CCTGTCAATAATAATGCGATTGTGTAA 58.658 33.333 0.00 0.00 33.27 2.41
3847 4284 9.715123 CTGTCAATAATAATGCGATTGTGTAAA 57.285 29.630 0.00 0.00 33.27 2.01
3856 4293 9.716507 ATAATGCGATTGTGTAAATAAGTGTTC 57.283 29.630 0.00 0.00 0.00 3.18
3857 4294 6.546972 TGCGATTGTGTAAATAAGTGTTCA 57.453 33.333 0.00 0.00 0.00 3.18
3858 4295 7.139896 TGCGATTGTGTAAATAAGTGTTCAT 57.860 32.000 0.00 0.00 0.00 2.57
3859 4296 7.240674 TGCGATTGTGTAAATAAGTGTTCATC 58.759 34.615 0.00 0.00 0.00 2.92
3860 4297 7.095017 TGCGATTGTGTAAATAAGTGTTCATCA 60.095 33.333 0.00 0.00 0.00 3.07
3861 4298 7.748683 GCGATTGTGTAAATAAGTGTTCATCAA 59.251 33.333 0.00 0.00 0.00 2.57
3862 4299 9.605955 CGATTGTGTAAATAAGTGTTCATCAAA 57.394 29.630 0.00 0.00 0.00 2.69
3870 4307 8.538409 AAATAAGTGTTCATCAAATTCTTGCC 57.462 30.769 0.00 0.00 32.14 4.52
3871 4308 4.164822 AGTGTTCATCAAATTCTTGCCG 57.835 40.909 0.00 0.00 32.14 5.69
3872 4309 3.569701 AGTGTTCATCAAATTCTTGCCGT 59.430 39.130 0.00 0.00 32.14 5.68
3873 4310 3.670055 GTGTTCATCAAATTCTTGCCGTG 59.330 43.478 0.00 0.00 32.14 4.94
3874 4311 3.567585 TGTTCATCAAATTCTTGCCGTGA 59.432 39.130 0.00 0.00 32.14 4.35
3875 4312 4.037327 TGTTCATCAAATTCTTGCCGTGAA 59.963 37.500 0.00 0.00 31.58 3.18
3876 4313 5.163513 GTTCATCAAATTCTTGCCGTGAAT 58.836 37.500 0.00 0.00 34.12 2.57
3877 4314 5.389859 TCATCAAATTCTTGCCGTGAATT 57.610 34.783 0.00 0.00 43.44 2.17
3878 4315 6.507958 TCATCAAATTCTTGCCGTGAATTA 57.492 33.333 8.42 0.00 41.54 1.40
3879 4316 6.321717 TCATCAAATTCTTGCCGTGAATTAC 58.678 36.000 8.42 0.00 41.54 1.89
3880 4317 5.054390 TCAAATTCTTGCCGTGAATTACC 57.946 39.130 8.42 0.00 41.54 2.85
3881 4318 4.764823 TCAAATTCTTGCCGTGAATTACCT 59.235 37.500 8.42 0.00 41.54 3.08
3882 4319 5.242838 TCAAATTCTTGCCGTGAATTACCTT 59.757 36.000 8.42 0.00 41.54 3.50
3883 4320 6.431543 TCAAATTCTTGCCGTGAATTACCTTA 59.568 34.615 8.42 0.00 41.54 2.69
3884 4321 7.122055 TCAAATTCTTGCCGTGAATTACCTTAT 59.878 33.333 8.42 0.00 41.54 1.73
3885 4322 8.402472 CAAATTCTTGCCGTGAATTACCTTATA 58.598 33.333 8.42 0.00 41.54 0.98
3886 4323 8.691661 AATTCTTGCCGTGAATTACCTTATAT 57.308 30.769 6.81 0.00 40.88 0.86
3887 4324 8.691661 ATTCTTGCCGTGAATTACCTTATATT 57.308 30.769 0.00 0.00 30.84 1.28
3888 4325 8.514330 TTCTTGCCGTGAATTACCTTATATTT 57.486 30.769 0.00 0.00 0.00 1.40
3889 4326 8.514330 TCTTGCCGTGAATTACCTTATATTTT 57.486 30.769 0.00 0.00 0.00 1.82
3890 4327 8.402472 TCTTGCCGTGAATTACCTTATATTTTG 58.598 33.333 0.00 0.00 0.00 2.44
3891 4328 7.867305 TGCCGTGAATTACCTTATATTTTGA 57.133 32.000 0.00 0.00 0.00 2.69
3892 4329 8.458573 TGCCGTGAATTACCTTATATTTTGAT 57.541 30.769 0.00 0.00 0.00 2.57
3893 4330 8.908903 TGCCGTGAATTACCTTATATTTTGATT 58.091 29.630 0.00 0.00 0.00 2.57
3982 4419 8.601845 TTATCATATACATGAAAGGTTGGACG 57.398 34.615 0.00 0.00 44.27 4.79
3983 4420 6.228616 TCATATACATGAAAGGTTGGACGA 57.771 37.500 0.00 0.00 38.25 4.20
3984 4421 6.645306 TCATATACATGAAAGGTTGGACGAA 58.355 36.000 0.00 0.00 38.25 3.85
3985 4422 6.761242 TCATATACATGAAAGGTTGGACGAAG 59.239 38.462 0.00 0.00 38.25 3.79
3986 4423 3.485463 ACATGAAAGGTTGGACGAAGA 57.515 42.857 0.00 0.00 0.00 2.87
3987 4424 3.403038 ACATGAAAGGTTGGACGAAGAG 58.597 45.455 0.00 0.00 0.00 2.85
3988 4425 2.543777 TGAAAGGTTGGACGAAGAGG 57.456 50.000 0.00 0.00 0.00 3.69
3989 4426 1.766496 TGAAAGGTTGGACGAAGAGGT 59.234 47.619 0.00 0.00 0.00 3.85
3990 4427 2.143925 GAAAGGTTGGACGAAGAGGTG 58.856 52.381 0.00 0.00 0.00 4.00
3991 4428 0.396811 AAGGTTGGACGAAGAGGTGG 59.603 55.000 0.00 0.00 0.00 4.61
3992 4429 0.763223 AGGTTGGACGAAGAGGTGGT 60.763 55.000 0.00 0.00 0.00 4.16
3993 4430 0.602905 GGTTGGACGAAGAGGTGGTG 60.603 60.000 0.00 0.00 0.00 4.17
3994 4431 0.602905 GTTGGACGAAGAGGTGGTGG 60.603 60.000 0.00 0.00 0.00 4.61
3995 4432 0.761323 TTGGACGAAGAGGTGGTGGA 60.761 55.000 0.00 0.00 0.00 4.02
3996 4433 0.761323 TGGACGAAGAGGTGGTGGAA 60.761 55.000 0.00 0.00 0.00 3.53
3997 4434 0.395312 GGACGAAGAGGTGGTGGAAA 59.605 55.000 0.00 0.00 0.00 3.13
3998 4435 1.608283 GGACGAAGAGGTGGTGGAAAG 60.608 57.143 0.00 0.00 0.00 2.62
3999 4436 1.343465 GACGAAGAGGTGGTGGAAAGA 59.657 52.381 0.00 0.00 0.00 2.52
4000 4437 1.766496 ACGAAGAGGTGGTGGAAAGAA 59.234 47.619 0.00 0.00 0.00 2.52
4001 4438 2.171870 ACGAAGAGGTGGTGGAAAGAAA 59.828 45.455 0.00 0.00 0.00 2.52
4002 4439 3.211045 CGAAGAGGTGGTGGAAAGAAAA 58.789 45.455 0.00 0.00 0.00 2.29
4003 4440 3.251004 CGAAGAGGTGGTGGAAAGAAAAG 59.749 47.826 0.00 0.00 0.00 2.27
4004 4441 3.953542 AGAGGTGGTGGAAAGAAAAGT 57.046 42.857 0.00 0.00 0.00 2.66
4005 4442 3.555966 AGAGGTGGTGGAAAGAAAAGTG 58.444 45.455 0.00 0.00 0.00 3.16
4006 4443 3.202151 AGAGGTGGTGGAAAGAAAAGTGA 59.798 43.478 0.00 0.00 0.00 3.41
4007 4444 3.951680 GAGGTGGTGGAAAGAAAAGTGAA 59.048 43.478 0.00 0.00 0.00 3.18
4008 4445 4.349365 AGGTGGTGGAAAGAAAAGTGAAA 58.651 39.130 0.00 0.00 0.00 2.69
4009 4446 4.962362 AGGTGGTGGAAAGAAAAGTGAAAT 59.038 37.500 0.00 0.00 0.00 2.17
4010 4447 5.049828 GGTGGTGGAAAGAAAAGTGAAATG 58.950 41.667 0.00 0.00 0.00 2.32
4011 4448 5.163457 GGTGGTGGAAAGAAAAGTGAAATGA 60.163 40.000 0.00 0.00 0.00 2.57
4012 4449 5.979517 GTGGTGGAAAGAAAAGTGAAATGAG 59.020 40.000 0.00 0.00 0.00 2.90
4013 4450 5.890985 TGGTGGAAAGAAAAGTGAAATGAGA 59.109 36.000 0.00 0.00 0.00 3.27
4014 4451 6.379703 TGGTGGAAAGAAAAGTGAAATGAGAA 59.620 34.615 0.00 0.00 0.00 2.87
4015 4452 6.697455 GGTGGAAAGAAAAGTGAAATGAGAAC 59.303 38.462 0.00 0.00 0.00 3.01
4016 4453 6.697455 GTGGAAAGAAAAGTGAAATGAGAACC 59.303 38.462 0.00 0.00 0.00 3.62
4017 4454 6.607198 TGGAAAGAAAAGTGAAATGAGAACCT 59.393 34.615 0.00 0.00 0.00 3.50
4018 4455 7.124147 TGGAAAGAAAAGTGAAATGAGAACCTT 59.876 33.333 0.00 0.00 0.00 3.50
4019 4456 8.630037 GGAAAGAAAAGTGAAATGAGAACCTTA 58.370 33.333 0.00 0.00 0.00 2.69
4020 4457 9.452065 GAAAGAAAAGTGAAATGAGAACCTTAC 57.548 33.333 0.00 0.00 0.00 2.34
4021 4458 8.519799 AAGAAAAGTGAAATGAGAACCTTACA 57.480 30.769 0.00 0.00 0.00 2.41
4022 4459 8.697507 AGAAAAGTGAAATGAGAACCTTACAT 57.302 30.769 0.00 0.00 0.00 2.29
4023 4460 9.136323 AGAAAAGTGAAATGAGAACCTTACATT 57.864 29.630 0.00 0.00 36.07 2.71
4024 4461 9.399403 GAAAAGTGAAATGAGAACCTTACATTC 57.601 33.333 0.00 0.00 33.90 2.67
4025 4462 8.697507 AAAGTGAAATGAGAACCTTACATTCT 57.302 30.769 0.00 0.00 39.15 2.40
4026 4463 8.697507 AAGTGAAATGAGAACCTTACATTCTT 57.302 30.769 0.00 0.00 36.53 2.52
4027 4464 8.697507 AGTGAAATGAGAACCTTACATTCTTT 57.302 30.769 0.00 0.00 36.53 2.52
4028 4465 9.136323 AGTGAAATGAGAACCTTACATTCTTTT 57.864 29.630 0.00 0.00 36.53 2.27
4029 4466 9.750125 GTGAAATGAGAACCTTACATTCTTTTT 57.250 29.630 0.00 0.00 36.53 1.94
4078 4515 8.728088 ATCACATTTAGCAAAAGTTTTACGAG 57.272 30.769 0.00 0.00 0.00 4.18
4079 4516 7.699566 TCACATTTAGCAAAAGTTTTACGAGT 58.300 30.769 0.00 0.00 0.00 4.18
4080 4517 8.185505 TCACATTTAGCAAAAGTTTTACGAGTT 58.814 29.630 0.00 0.00 0.00 3.01
4081 4518 8.803799 CACATTTAGCAAAAGTTTTACGAGTTT 58.196 29.630 0.00 0.00 0.00 2.66
4082 4519 9.361315 ACATTTAGCAAAAGTTTTACGAGTTTT 57.639 25.926 0.00 0.00 33.58 2.43
4086 4523 7.745022 AGCAAAAGTTTTACGAGTTTTTACC 57.255 32.000 0.00 0.00 31.56 2.85
4087 4524 7.314393 AGCAAAAGTTTTACGAGTTTTTACCA 58.686 30.769 0.00 0.00 31.56 3.25
4088 4525 7.274033 AGCAAAAGTTTTACGAGTTTTTACCAC 59.726 33.333 0.00 0.00 31.56 4.16
4089 4526 7.062022 GCAAAAGTTTTACGAGTTTTTACCACA 59.938 33.333 0.00 0.00 31.56 4.17
4090 4527 8.913656 CAAAAGTTTTACGAGTTTTTACCACAA 58.086 29.630 0.00 0.00 31.56 3.33
4091 4528 8.451687 AAAGTTTTACGAGTTTTTACCACAAC 57.548 30.769 0.00 0.00 0.00 3.32
4092 4529 7.381766 AGTTTTACGAGTTTTTACCACAACT 57.618 32.000 0.00 0.00 35.88 3.16
4093 4530 8.491331 AGTTTTACGAGTTTTTACCACAACTA 57.509 30.769 0.00 0.00 33.22 2.24
4094 4531 8.606602 AGTTTTACGAGTTTTTACCACAACTAG 58.393 33.333 0.00 0.00 33.22 2.57
4095 4532 8.603181 GTTTTACGAGTTTTTACCACAACTAGA 58.397 33.333 0.00 0.00 33.22 2.43
4096 4533 8.715191 TTTACGAGTTTTTACCACAACTAGAA 57.285 30.769 0.00 0.00 33.22 2.10
4097 4534 6.594284 ACGAGTTTTTACCACAACTAGAAC 57.406 37.500 0.00 0.00 33.22 3.01
4098 4535 6.108015 ACGAGTTTTTACCACAACTAGAACA 58.892 36.000 0.00 0.00 33.22 3.18
4099 4536 6.594937 ACGAGTTTTTACCACAACTAGAACAA 59.405 34.615 0.00 0.00 33.22 2.83
4100 4537 7.281549 ACGAGTTTTTACCACAACTAGAACAAT 59.718 33.333 0.00 0.00 33.22 2.71
4101 4538 7.586300 CGAGTTTTTACCACAACTAGAACAATG 59.414 37.037 0.00 0.00 33.22 2.82
4102 4539 7.200455 AGTTTTTACCACAACTAGAACAATGC 58.800 34.615 0.00 0.00 31.20 3.56
4103 4540 5.699097 TTTACCACAACTAGAACAATGCC 57.301 39.130 0.00 0.00 0.00 4.40
4104 4541 2.514803 ACCACAACTAGAACAATGCCC 58.485 47.619 0.00 0.00 0.00 5.36
4105 4542 1.468520 CCACAACTAGAACAATGCCCG 59.531 52.381 0.00 0.00 0.00 6.13
4106 4543 2.151202 CACAACTAGAACAATGCCCGT 58.849 47.619 0.00 0.00 0.00 5.28
4107 4544 2.095768 CACAACTAGAACAATGCCCGTG 60.096 50.000 0.00 0.00 0.00 4.94
4108 4545 1.135689 CAACTAGAACAATGCCCGTGC 60.136 52.381 0.00 0.00 38.26 5.34
4109 4546 1.019278 ACTAGAACAATGCCCGTGCG 61.019 55.000 0.00 0.00 41.78 5.34
4110 4547 1.004320 TAGAACAATGCCCGTGCGT 60.004 52.632 0.00 0.00 41.78 5.24
4115 4552 3.600694 AATGCCCGTGCGTTGCAA 61.601 55.556 0.00 0.00 44.90 4.08
4116 4553 3.839642 AATGCCCGTGCGTTGCAAC 62.840 57.895 19.89 19.89 44.90 4.17
4153 4590 8.642935 ATTCTAGTATCTAGCATGTTAGAGCA 57.357 34.615 21.70 11.29 33.44 4.26
4154 4591 8.642935 TTCTAGTATCTAGCATGTTAGAGCAT 57.357 34.615 21.70 13.12 33.44 3.79
4155 4592 8.275015 TCTAGTATCTAGCATGTTAGAGCATC 57.725 38.462 21.70 12.68 33.44 3.91
4169 4606 3.460857 GAGCATCTCCAATAGACGGTT 57.539 47.619 0.00 0.00 36.93 4.44
4170 4607 4.585955 GAGCATCTCCAATAGACGGTTA 57.414 45.455 0.00 0.00 36.93 2.85
4171 4608 4.945246 GAGCATCTCCAATAGACGGTTAA 58.055 43.478 0.00 0.00 36.93 2.01
4172 4609 5.542779 GAGCATCTCCAATAGACGGTTAAT 58.457 41.667 0.00 0.00 36.93 1.40
4173 4610 6.665992 AGCATCTCCAATAGACGGTTAATA 57.334 37.500 0.00 0.00 36.93 0.98
4174 4611 7.246171 AGCATCTCCAATAGACGGTTAATAT 57.754 36.000 0.00 0.00 36.93 1.28
4175 4612 7.099764 AGCATCTCCAATAGACGGTTAATATG 58.900 38.462 0.00 0.00 36.93 1.78
4176 4613 6.874134 GCATCTCCAATAGACGGTTAATATGT 59.126 38.462 0.00 0.00 36.93 2.29
4177 4614 8.033038 GCATCTCCAATAGACGGTTAATATGTA 58.967 37.037 0.00 0.00 36.93 2.29
4178 4615 9.923143 CATCTCCAATAGACGGTTAATATGTAA 57.077 33.333 0.00 0.00 36.93 2.41
4208 4645 3.194005 ACTTTGGAAGTTTCGAGAGCA 57.806 42.857 0.00 0.00 39.04 4.26
4209 4646 3.541632 ACTTTGGAAGTTTCGAGAGCAA 58.458 40.909 0.00 0.00 39.04 3.91
4210 4647 3.945285 ACTTTGGAAGTTTCGAGAGCAAA 59.055 39.130 0.00 0.00 39.04 3.68
4211 4648 4.398044 ACTTTGGAAGTTTCGAGAGCAAAA 59.602 37.500 0.00 0.00 39.04 2.44
4212 4649 4.974368 TTGGAAGTTTCGAGAGCAAAAA 57.026 36.364 0.00 0.00 0.00 1.94
4213 4650 4.552166 TGGAAGTTTCGAGAGCAAAAAG 57.448 40.909 0.00 0.00 0.00 2.27
4214 4651 3.243068 TGGAAGTTTCGAGAGCAAAAAGC 60.243 43.478 0.00 0.00 46.19 3.51
4231 4668 1.517242 AGCTTTGCTTCAAGAGACCG 58.483 50.000 0.00 0.00 33.89 4.79
4232 4669 1.202698 AGCTTTGCTTCAAGAGACCGT 60.203 47.619 0.00 0.00 33.89 4.83
4233 4670 1.195674 GCTTTGCTTCAAGAGACCGTC 59.804 52.381 0.00 0.00 0.00 4.79
4234 4671 1.801178 CTTTGCTTCAAGAGACCGTCC 59.199 52.381 0.00 0.00 0.00 4.79
4235 4672 0.756294 TTGCTTCAAGAGACCGTCCA 59.244 50.000 0.00 0.00 0.00 4.02
4236 4673 0.976641 TGCTTCAAGAGACCGTCCAT 59.023 50.000 0.00 0.00 0.00 3.41
4237 4674 2.176045 TGCTTCAAGAGACCGTCCATA 58.824 47.619 0.00 0.00 0.00 2.74
4238 4675 2.766263 TGCTTCAAGAGACCGTCCATAT 59.234 45.455 0.00 0.00 0.00 1.78
4239 4676 3.126831 GCTTCAAGAGACCGTCCATATG 58.873 50.000 0.00 0.00 0.00 1.78
4240 4677 3.430929 GCTTCAAGAGACCGTCCATATGT 60.431 47.826 1.24 0.00 0.00 2.29
4241 4678 4.202121 GCTTCAAGAGACCGTCCATATGTA 60.202 45.833 1.24 0.00 0.00 2.29
4242 4679 5.681437 GCTTCAAGAGACCGTCCATATGTAA 60.681 44.000 1.24 0.00 0.00 2.41
4243 4680 5.925506 TCAAGAGACCGTCCATATGTAAA 57.074 39.130 1.24 0.00 0.00 2.01
4244 4681 6.288941 TCAAGAGACCGTCCATATGTAAAA 57.711 37.500 1.24 0.00 0.00 1.52
4245 4682 6.703319 TCAAGAGACCGTCCATATGTAAAAA 58.297 36.000 1.24 0.00 0.00 1.94
4264 4701 3.592898 AAAAATTTGGACCATCGCCTC 57.407 42.857 0.00 0.00 0.00 4.70
4265 4702 1.474330 AAATTTGGACCATCGCCTCC 58.526 50.000 0.00 0.00 0.00 4.30
4266 4703 0.625849 AATTTGGACCATCGCCTCCT 59.374 50.000 0.00 0.00 0.00 3.69
4267 4704 0.107017 ATTTGGACCATCGCCTCCTG 60.107 55.000 0.00 0.00 0.00 3.86
4268 4705 2.196997 TTTGGACCATCGCCTCCTGG 62.197 60.000 0.00 0.00 38.55 4.45
4269 4706 2.764128 GGACCATCGCCTCCTGGA 60.764 66.667 0.00 0.00 36.35 3.86
4270 4707 2.801631 GGACCATCGCCTCCTGGAG 61.802 68.421 17.02 17.02 36.35 3.86
4271 4708 1.758514 GACCATCGCCTCCTGGAGA 60.759 63.158 25.18 5.91 45.88 3.71
4276 4713 3.607871 TCGCCTCCTGGAGATGTAA 57.392 52.632 25.18 2.97 37.24 2.41
4277 4714 1.860641 TCGCCTCCTGGAGATGTAAA 58.139 50.000 25.18 1.57 37.24 2.01
4278 4715 2.184533 TCGCCTCCTGGAGATGTAAAA 58.815 47.619 25.18 0.53 37.24 1.52
4279 4716 2.771943 TCGCCTCCTGGAGATGTAAAAT 59.228 45.455 25.18 0.00 37.24 1.82
4280 4717 3.199946 TCGCCTCCTGGAGATGTAAAATT 59.800 43.478 25.18 0.00 37.24 1.82
4281 4718 3.313526 CGCCTCCTGGAGATGTAAAATTG 59.686 47.826 25.18 5.18 34.95 2.32
4282 4719 4.526970 GCCTCCTGGAGATGTAAAATTGA 58.473 43.478 25.18 0.00 34.57 2.57
4283 4720 4.949856 GCCTCCTGGAGATGTAAAATTGAA 59.050 41.667 25.18 0.00 34.57 2.69
4284 4721 5.418840 GCCTCCTGGAGATGTAAAATTGAAA 59.581 40.000 25.18 0.00 34.57 2.69
4285 4722 6.071391 GCCTCCTGGAGATGTAAAATTGAAAA 60.071 38.462 25.18 0.00 34.57 2.29
4286 4723 7.315890 CCTCCTGGAGATGTAAAATTGAAAAC 58.684 38.462 25.18 0.00 34.57 2.43
4287 4724 7.177392 CCTCCTGGAGATGTAAAATTGAAAACT 59.823 37.037 25.18 0.00 34.57 2.66
4288 4725 8.477419 TCCTGGAGATGTAAAATTGAAAACTT 57.523 30.769 0.00 0.00 0.00 2.66
4289 4726 8.576442 TCCTGGAGATGTAAAATTGAAAACTTC 58.424 33.333 0.00 0.00 0.00 3.01
4290 4727 7.538678 CCTGGAGATGTAAAATTGAAAACTTCG 59.461 37.037 0.00 0.00 0.00 3.79
4291 4728 7.936584 TGGAGATGTAAAATTGAAAACTTCGT 58.063 30.769 0.00 0.00 0.00 3.85
4292 4729 7.860373 TGGAGATGTAAAATTGAAAACTTCGTG 59.140 33.333 0.00 0.00 0.00 4.35
4293 4730 8.073768 GGAGATGTAAAATTGAAAACTTCGTGA 58.926 33.333 0.00 0.00 0.00 4.35
4294 4731 9.612620 GAGATGTAAAATTGAAAACTTCGTGAT 57.387 29.630 0.00 0.00 0.00 3.06
4295 4732 9.398170 AGATGTAAAATTGAAAACTTCGTGATG 57.602 29.630 0.00 0.00 0.00 3.07
4296 4733 7.388290 TGTAAAATTGAAAACTTCGTGATGC 57.612 32.000 0.00 0.00 0.00 3.91
4297 4734 6.975197 TGTAAAATTGAAAACTTCGTGATGCA 59.025 30.769 0.00 0.00 0.00 3.96
4298 4735 6.900568 AAAATTGAAAACTTCGTGATGCAA 57.099 29.167 0.00 0.00 0.00 4.08
4299 4736 6.900568 AAATTGAAAACTTCGTGATGCAAA 57.099 29.167 0.00 0.00 0.00 3.68
4300 4737 7.481275 AAATTGAAAACTTCGTGATGCAAAT 57.519 28.000 0.00 0.00 0.00 2.32
4301 4738 7.481275 AATTGAAAACTTCGTGATGCAAATT 57.519 28.000 0.00 0.00 0.00 1.82
4302 4739 6.900568 TTGAAAACTTCGTGATGCAAATTT 57.099 29.167 0.00 0.00 0.00 1.82
4303 4740 7.993821 TTGAAAACTTCGTGATGCAAATTTA 57.006 28.000 0.00 0.00 0.00 1.40
4304 4741 7.388290 TGAAAACTTCGTGATGCAAATTTAC 57.612 32.000 0.00 0.00 0.00 2.01
4305 4742 6.975197 TGAAAACTTCGTGATGCAAATTTACA 59.025 30.769 0.00 0.00 0.00 2.41
4306 4743 7.651304 TGAAAACTTCGTGATGCAAATTTACAT 59.349 29.630 3.46 3.46 0.00 2.29
4307 4744 7.566858 AAACTTCGTGATGCAAATTTACATC 57.433 32.000 20.21 20.21 42.46 3.06
4314 4751 6.682423 TGATGCAAATTTACATCACGAGAT 57.318 33.333 24.14 0.00 45.79 2.75
4315 4752 7.784633 TGATGCAAATTTACATCACGAGATA 57.215 32.000 24.14 5.82 45.79 1.98
4316 4753 7.630026 TGATGCAAATTTACATCACGAGATAC 58.370 34.615 24.14 2.93 45.79 2.24
4317 4754 6.976636 TGCAAATTTACATCACGAGATACA 57.023 33.333 0.00 0.00 31.88 2.29
4318 4755 7.371126 TGCAAATTTACATCACGAGATACAA 57.629 32.000 0.00 0.00 31.88 2.41
4319 4756 7.240674 TGCAAATTTACATCACGAGATACAAC 58.759 34.615 0.00 0.00 31.88 3.32
4320 4757 7.095017 TGCAAATTTACATCACGAGATACAACA 60.095 33.333 0.00 0.00 31.88 3.33
4321 4758 7.426456 GCAAATTTACATCACGAGATACAACAG 59.574 37.037 0.00 0.00 31.88 3.16
4322 4759 8.655970 CAAATTTACATCACGAGATACAACAGA 58.344 33.333 0.00 0.00 31.88 3.41
4323 4760 8.948631 AATTTACATCACGAGATACAACAGAT 57.051 30.769 0.00 0.00 31.88 2.90
4324 4761 7.755582 TTTACATCACGAGATACAACAGATG 57.244 36.000 0.00 0.00 37.85 2.90
4325 4762 5.330455 ACATCACGAGATACAACAGATGT 57.670 39.130 0.00 0.00 46.36 3.06
4334 4771 2.961522 ACAACAGATGTAAAACCGCG 57.038 45.000 0.00 0.00 41.63 6.46
4335 4772 1.533731 ACAACAGATGTAAAACCGCGG 59.466 47.619 26.86 26.86 41.63 6.46
4336 4773 0.519961 AACAGATGTAAAACCGCGGC 59.480 50.000 28.58 9.24 0.00 6.53
4337 4774 1.303091 ACAGATGTAAAACCGCGGCC 61.303 55.000 28.58 8.81 0.00 6.13
4338 4775 2.104253 AGATGTAAAACCGCGGCCG 61.104 57.895 28.58 24.05 0.00 6.13
4339 4776 3.728267 GATGTAAAACCGCGGCCGC 62.728 63.158 39.82 39.82 37.85 6.53
4359 4796 4.337060 GCCAAACGACCAACCGCC 62.337 66.667 0.00 0.00 0.00 6.13
4360 4797 2.902846 CCAAACGACCAACCGCCA 60.903 61.111 0.00 0.00 0.00 5.69
4361 4798 2.330041 CAAACGACCAACCGCCAC 59.670 61.111 0.00 0.00 0.00 5.01
4362 4799 2.184167 CAAACGACCAACCGCCACT 61.184 57.895 0.00 0.00 0.00 4.00
4363 4800 1.452470 AAACGACCAACCGCCACTT 60.452 52.632 0.00 0.00 0.00 3.16
4364 4801 1.441732 AAACGACCAACCGCCACTTC 61.442 55.000 0.00 0.00 0.00 3.01
4365 4802 2.280524 CGACCAACCGCCACTTCA 60.281 61.111 0.00 0.00 0.00 3.02
4366 4803 1.671054 CGACCAACCGCCACTTCAT 60.671 57.895 0.00 0.00 0.00 2.57
4367 4804 1.234615 CGACCAACCGCCACTTCATT 61.235 55.000 0.00 0.00 0.00 2.57
4368 4805 0.521735 GACCAACCGCCACTTCATTC 59.478 55.000 0.00 0.00 0.00 2.67
4369 4806 0.893727 ACCAACCGCCACTTCATTCC 60.894 55.000 0.00 0.00 0.00 3.01
4370 4807 1.595093 CCAACCGCCACTTCATTCCC 61.595 60.000 0.00 0.00 0.00 3.97
4371 4808 1.304134 AACCGCCACTTCATTCCCC 60.304 57.895 0.00 0.00 0.00 4.81
4372 4809 1.789576 AACCGCCACTTCATTCCCCT 61.790 55.000 0.00 0.00 0.00 4.79
4373 4810 1.000896 CCGCCACTTCATTCCCCTT 60.001 57.895 0.00 0.00 0.00 3.95
4374 4811 1.032114 CCGCCACTTCATTCCCCTTC 61.032 60.000 0.00 0.00 0.00 3.46
4375 4812 1.032114 CGCCACTTCATTCCCCTTCC 61.032 60.000 0.00 0.00 0.00 3.46
4376 4813 1.032114 GCCACTTCATTCCCCTTCCG 61.032 60.000 0.00 0.00 0.00 4.30
4377 4814 1.032114 CCACTTCATTCCCCTTCCGC 61.032 60.000 0.00 0.00 0.00 5.54
4378 4815 1.032114 CACTTCATTCCCCTTCCGCC 61.032 60.000 0.00 0.00 0.00 6.13
4379 4816 1.208165 ACTTCATTCCCCTTCCGCCT 61.208 55.000 0.00 0.00 0.00 5.52
4380 4817 0.464554 CTTCATTCCCCTTCCGCCTC 60.465 60.000 0.00 0.00 0.00 4.70
4381 4818 2.203070 CATTCCCCTTCCGCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
4382 4819 2.687566 ATTCCCCTTCCGCCTCGT 60.688 61.111 0.00 0.00 0.00 4.18
4383 4820 3.031417 ATTCCCCTTCCGCCTCGTG 62.031 63.158 0.00 0.00 0.00 4.35
4384 4821 4.689549 TCCCCTTCCGCCTCGTGA 62.690 66.667 0.00 0.00 0.00 4.35
4385 4822 4.452733 CCCCTTCCGCCTCGTGAC 62.453 72.222 0.00 0.00 0.00 3.67
4386 4823 4.452733 CCCTTCCGCCTCGTGACC 62.453 72.222 0.00 0.00 0.00 4.02
4387 4824 4.796231 CCTTCCGCCTCGTGACCG 62.796 72.222 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 3.060895 GCAAATCTCTACACGTGTGCTAC 59.939 47.826 30.83 6.89 0.00 3.58
133 134 1.074752 GGAAGTCGTCGACGTACTCT 58.925 55.000 34.40 24.04 40.80 3.24
286 290 1.841556 TCCTTTCGGGGAGCAGTGT 60.842 57.895 0.00 0.00 35.33 3.55
296 300 2.357760 TTTCGCGGGTCCTTTCGG 60.358 61.111 6.13 0.00 0.00 4.30
589 602 4.515567 GGGATTTGGTTATGGATCTCGTTC 59.484 45.833 0.00 0.00 0.00 3.95
629 642 1.660575 CAACACGACGGACGAAGCT 60.661 57.895 6.90 0.00 45.77 3.74
642 655 0.233332 GACTTGTCAGCGCTCAACAC 59.767 55.000 19.02 9.47 0.00 3.32
892 906 2.481212 CCATGATCCCGTGGTTGTG 58.519 57.895 0.00 0.00 43.07 3.33
941 955 2.224281 CCAGCCTATCTACAATTCCGCA 60.224 50.000 0.00 0.00 0.00 5.69
952 966 0.178975 CCTCCTCGACCAGCCTATCT 60.179 60.000 0.00 0.00 0.00 1.98
1026 1043 1.174783 GGTCAAGGTAGTCGCTGAGA 58.825 55.000 0.00 0.00 0.00 3.27
1247 1270 1.144936 CTGCCACTCCCCTCGAATC 59.855 63.158 0.00 0.00 0.00 2.52
1854 1877 0.534203 TCTTGTTGTGAACCCTCGCC 60.534 55.000 0.00 0.00 0.00 5.54
2220 2249 0.031314 TCTCTTCATCCGCATCGAGC 59.969 55.000 0.00 0.00 40.87 5.03
2256 2285 1.107114 CTGCCTCGAGCTTCCTAAGA 58.893 55.000 6.99 0.00 44.23 2.10
2310 2339 2.349590 TCGCTTGATCTTGGTGTCATG 58.650 47.619 0.00 0.00 0.00 3.07
2481 2510 3.760035 AGCACGAACGGCCTCGAT 61.760 61.111 20.15 3.96 41.44 3.59
2856 2885 2.580470 GATCATGAGCGCGTCCACG 61.580 63.158 8.43 0.00 43.27 4.94
3220 3249 2.741985 CCACTGCATCGCCGTCAA 60.742 61.111 0.00 0.00 0.00 3.18
3673 3757 8.068977 GCTAAATGTGCAATTCAAATGAAAACA 58.931 29.630 0.00 3.94 37.61 2.83
3674 3758 8.068977 TGCTAAATGTGCAATTCAAATGAAAAC 58.931 29.630 0.00 0.00 37.51 2.43
3741 4178 9.398170 CATTGATCTAGTTGTGGTAAAAACTTG 57.602 33.333 0.00 0.00 37.74 3.16
3742 4179 8.082242 GCATTGATCTAGTTGTGGTAAAAACTT 58.918 33.333 0.00 0.00 37.74 2.66
3767 4204 2.509786 CCGTTGCAATGCATGGGC 60.510 61.111 9.39 14.84 38.76 5.36
3768 4205 2.184836 CCCGTTGCAATGCATGGG 59.815 61.111 25.10 25.10 44.20 4.00
3769 4206 1.031235 TATCCCGTTGCAATGCATGG 58.969 50.000 9.39 14.18 38.76 3.66
3770 4207 4.502171 TTATATCCCGTTGCAATGCATG 57.498 40.909 9.39 4.77 38.76 4.06
3771 4208 5.726980 ATTTATATCCCGTTGCAATGCAT 57.273 34.783 9.39 9.43 38.76 3.96
3772 4209 6.832520 ATATTTATATCCCGTTGCAATGCA 57.167 33.333 13.42 2.72 36.47 3.96
3773 4210 7.090173 ACAATATTTATATCCCGTTGCAATGC 58.910 34.615 13.42 0.00 0.00 3.56
3774 4211 9.773328 CTACAATATTTATATCCCGTTGCAATG 57.227 33.333 11.90 11.90 0.00 2.82
3775 4212 9.515226 ACTACAATATTTATATCCCGTTGCAAT 57.485 29.630 0.59 0.00 0.00 3.56
3776 4213 8.911918 ACTACAATATTTATATCCCGTTGCAA 57.088 30.769 0.00 0.00 0.00 4.08
3799 4236 9.379791 GACAGGTAAATTACAAGCTAACATACT 57.620 33.333 5.45 0.00 0.00 2.12
3800 4237 9.158233 TGACAGGTAAATTACAAGCTAACATAC 57.842 33.333 5.45 0.00 0.00 2.39
3801 4238 9.727859 TTGACAGGTAAATTACAAGCTAACATA 57.272 29.630 5.45 0.00 0.00 2.29
3802 4239 8.630054 TTGACAGGTAAATTACAAGCTAACAT 57.370 30.769 5.45 0.00 0.00 2.71
3803 4240 8.630054 ATTGACAGGTAAATTACAAGCTAACA 57.370 30.769 5.45 0.00 0.00 2.41
3815 4252 9.897744 CAATCGCATTATTATTGACAGGTAAAT 57.102 29.630 0.00 0.00 33.38 1.40
3816 4253 8.898761 ACAATCGCATTATTATTGACAGGTAAA 58.101 29.630 0.00 0.00 35.18 2.01
3817 4254 8.341903 CACAATCGCATTATTATTGACAGGTAA 58.658 33.333 0.00 0.00 35.18 2.85
3818 4255 7.497579 ACACAATCGCATTATTATTGACAGGTA 59.502 33.333 0.00 0.00 35.18 3.08
3819 4256 6.318648 ACACAATCGCATTATTATTGACAGGT 59.681 34.615 0.00 0.00 35.18 4.00
3820 4257 6.728200 ACACAATCGCATTATTATTGACAGG 58.272 36.000 0.00 0.00 35.18 4.00
3821 4258 9.715123 TTTACACAATCGCATTATTATTGACAG 57.285 29.630 0.00 0.00 35.18 3.51
3830 4267 9.716507 GAACACTTATTTACACAATCGCATTAT 57.283 29.630 0.00 0.00 0.00 1.28
3831 4268 8.722394 TGAACACTTATTTACACAATCGCATTA 58.278 29.630 0.00 0.00 0.00 1.90
3832 4269 7.589395 TGAACACTTATTTACACAATCGCATT 58.411 30.769 0.00 0.00 0.00 3.56
3833 4270 7.139896 TGAACACTTATTTACACAATCGCAT 57.860 32.000 0.00 0.00 0.00 4.73
3834 4271 6.546972 TGAACACTTATTTACACAATCGCA 57.453 33.333 0.00 0.00 0.00 5.10
3835 4272 7.240674 TGATGAACACTTATTTACACAATCGC 58.759 34.615 0.00 0.00 0.00 4.58
3836 4273 9.605955 TTTGATGAACACTTATTTACACAATCG 57.394 29.630 0.00 0.00 0.00 3.34
3844 4281 9.638239 GGCAAGAATTTGATGAACACTTATTTA 57.362 29.630 0.00 0.00 36.36 1.40
3845 4282 7.329226 CGGCAAGAATTTGATGAACACTTATTT 59.671 33.333 0.00 0.00 36.36 1.40
3846 4283 6.808212 CGGCAAGAATTTGATGAACACTTATT 59.192 34.615 0.00 0.00 36.36 1.40
3847 4284 6.071952 ACGGCAAGAATTTGATGAACACTTAT 60.072 34.615 0.00 0.00 36.36 1.73
3848 4285 5.240623 ACGGCAAGAATTTGATGAACACTTA 59.759 36.000 0.00 0.00 36.36 2.24
3849 4286 4.037923 ACGGCAAGAATTTGATGAACACTT 59.962 37.500 0.00 0.00 36.36 3.16
3850 4287 3.569701 ACGGCAAGAATTTGATGAACACT 59.430 39.130 0.00 0.00 36.36 3.55
3851 4288 3.670055 CACGGCAAGAATTTGATGAACAC 59.330 43.478 0.00 0.00 36.36 3.32
3852 4289 3.567585 TCACGGCAAGAATTTGATGAACA 59.432 39.130 0.00 0.00 36.36 3.18
3853 4290 4.159377 TCACGGCAAGAATTTGATGAAC 57.841 40.909 0.00 0.00 36.36 3.18
3854 4291 4.844998 TTCACGGCAAGAATTTGATGAA 57.155 36.364 0.00 0.00 36.36 2.57
3855 4292 5.389859 AATTCACGGCAAGAATTTGATGA 57.610 34.783 7.97 0.00 41.54 2.92
3856 4293 5.516339 GGTAATTCACGGCAAGAATTTGATG 59.484 40.000 16.19 0.00 41.54 3.07
3857 4294 5.418840 AGGTAATTCACGGCAAGAATTTGAT 59.581 36.000 16.19 4.01 41.54 2.57
3858 4295 4.764823 AGGTAATTCACGGCAAGAATTTGA 59.235 37.500 16.19 1.26 41.54 2.69
3859 4296 5.059404 AGGTAATTCACGGCAAGAATTTG 57.941 39.130 16.19 0.00 41.54 2.32
3860 4297 5.722021 AAGGTAATTCACGGCAAGAATTT 57.278 34.783 16.19 0.68 41.54 1.82
3861 4298 8.691661 ATATAAGGTAATTCACGGCAAGAATT 57.308 30.769 15.54 15.54 45.05 2.17
3862 4299 8.691661 AATATAAGGTAATTCACGGCAAGAAT 57.308 30.769 0.00 0.00 37.30 2.40
3863 4300 8.514330 AAATATAAGGTAATTCACGGCAAGAA 57.486 30.769 0.00 0.00 0.00 2.52
3864 4301 8.402472 CAAAATATAAGGTAATTCACGGCAAGA 58.598 33.333 0.00 0.00 0.00 3.02
3865 4302 8.402472 TCAAAATATAAGGTAATTCACGGCAAG 58.598 33.333 0.00 0.00 0.00 4.01
3866 4303 8.282455 TCAAAATATAAGGTAATTCACGGCAA 57.718 30.769 0.00 0.00 0.00 4.52
3867 4304 7.867305 TCAAAATATAAGGTAATTCACGGCA 57.133 32.000 0.00 0.00 0.00 5.69
3956 4393 9.219603 CGTCCAACCTTTCATGTATATGATAAT 57.780 33.333 2.71 0.00 42.60 1.28
3957 4394 8.425703 TCGTCCAACCTTTCATGTATATGATAA 58.574 33.333 2.71 1.07 42.60 1.75
3958 4395 7.958088 TCGTCCAACCTTTCATGTATATGATA 58.042 34.615 2.71 0.00 42.60 2.15
3959 4396 6.826668 TCGTCCAACCTTTCATGTATATGAT 58.173 36.000 2.71 0.00 42.60 2.45
3960 4397 6.228616 TCGTCCAACCTTTCATGTATATGA 57.771 37.500 0.00 0.00 41.44 2.15
3961 4398 6.761242 TCTTCGTCCAACCTTTCATGTATATG 59.239 38.462 0.00 0.00 35.57 1.78
3962 4399 6.884832 TCTTCGTCCAACCTTTCATGTATAT 58.115 36.000 0.00 0.00 0.00 0.86
3963 4400 6.288941 TCTTCGTCCAACCTTTCATGTATA 57.711 37.500 0.00 0.00 0.00 1.47
3964 4401 5.160607 TCTTCGTCCAACCTTTCATGTAT 57.839 39.130 0.00 0.00 0.00 2.29
3965 4402 4.562757 CCTCTTCGTCCAACCTTTCATGTA 60.563 45.833 0.00 0.00 0.00 2.29
3966 4403 3.403038 CTCTTCGTCCAACCTTTCATGT 58.597 45.455 0.00 0.00 0.00 3.21
3967 4404 2.744202 CCTCTTCGTCCAACCTTTCATG 59.256 50.000 0.00 0.00 0.00 3.07
3968 4405 2.372172 ACCTCTTCGTCCAACCTTTCAT 59.628 45.455 0.00 0.00 0.00 2.57
3969 4406 1.766496 ACCTCTTCGTCCAACCTTTCA 59.234 47.619 0.00 0.00 0.00 2.69
3970 4407 2.143925 CACCTCTTCGTCCAACCTTTC 58.856 52.381 0.00 0.00 0.00 2.62
3971 4408 1.202770 CCACCTCTTCGTCCAACCTTT 60.203 52.381 0.00 0.00 0.00 3.11
3972 4409 0.396811 CCACCTCTTCGTCCAACCTT 59.603 55.000 0.00 0.00 0.00 3.50
3973 4410 0.763223 ACCACCTCTTCGTCCAACCT 60.763 55.000 0.00 0.00 0.00 3.50
3974 4411 0.602905 CACCACCTCTTCGTCCAACC 60.603 60.000 0.00 0.00 0.00 3.77
3975 4412 0.602905 CCACCACCTCTTCGTCCAAC 60.603 60.000 0.00 0.00 0.00 3.77
3976 4413 0.761323 TCCACCACCTCTTCGTCCAA 60.761 55.000 0.00 0.00 0.00 3.53
3977 4414 0.761323 TTCCACCACCTCTTCGTCCA 60.761 55.000 0.00 0.00 0.00 4.02
3978 4415 0.395312 TTTCCACCACCTCTTCGTCC 59.605 55.000 0.00 0.00 0.00 4.79
3979 4416 1.343465 TCTTTCCACCACCTCTTCGTC 59.657 52.381 0.00 0.00 0.00 4.20
3980 4417 1.420430 TCTTTCCACCACCTCTTCGT 58.580 50.000 0.00 0.00 0.00 3.85
3981 4418 2.543777 TTCTTTCCACCACCTCTTCG 57.456 50.000 0.00 0.00 0.00 3.79
3982 4419 4.036852 CACTTTTCTTTCCACCACCTCTTC 59.963 45.833 0.00 0.00 0.00 2.87
3983 4420 3.954258 CACTTTTCTTTCCACCACCTCTT 59.046 43.478 0.00 0.00 0.00 2.85
3984 4421 3.202151 TCACTTTTCTTTCCACCACCTCT 59.798 43.478 0.00 0.00 0.00 3.69
3985 4422 3.551846 TCACTTTTCTTTCCACCACCTC 58.448 45.455 0.00 0.00 0.00 3.85
3986 4423 3.662759 TCACTTTTCTTTCCACCACCT 57.337 42.857 0.00 0.00 0.00 4.00
3987 4424 4.729227 TTTCACTTTTCTTTCCACCACC 57.271 40.909 0.00 0.00 0.00 4.61
3988 4425 5.901552 TCATTTCACTTTTCTTTCCACCAC 58.098 37.500 0.00 0.00 0.00 4.16
3989 4426 5.890985 TCTCATTTCACTTTTCTTTCCACCA 59.109 36.000 0.00 0.00 0.00 4.17
3990 4427 6.391227 TCTCATTTCACTTTTCTTTCCACC 57.609 37.500 0.00 0.00 0.00 4.61
3991 4428 6.697455 GGTTCTCATTTCACTTTTCTTTCCAC 59.303 38.462 0.00 0.00 0.00 4.02
3992 4429 6.607198 AGGTTCTCATTTCACTTTTCTTTCCA 59.393 34.615 0.00 0.00 0.00 3.53
3993 4430 7.043961 AGGTTCTCATTTCACTTTTCTTTCC 57.956 36.000 0.00 0.00 0.00 3.13
3994 4431 9.452065 GTAAGGTTCTCATTTCACTTTTCTTTC 57.548 33.333 0.00 0.00 0.00 2.62
3995 4432 8.966868 TGTAAGGTTCTCATTTCACTTTTCTTT 58.033 29.630 0.00 0.00 0.00 2.52
3996 4433 8.519799 TGTAAGGTTCTCATTTCACTTTTCTT 57.480 30.769 0.00 0.00 0.00 2.52
3997 4434 8.697507 ATGTAAGGTTCTCATTTCACTTTTCT 57.302 30.769 0.00 0.00 0.00 2.52
3998 4435 9.399403 GAATGTAAGGTTCTCATTTCACTTTTC 57.601 33.333 0.00 0.00 32.90 2.29
3999 4436 9.136323 AGAATGTAAGGTTCTCATTTCACTTTT 57.864 29.630 0.00 0.00 30.34 2.27
4000 4437 8.697507 AGAATGTAAGGTTCTCATTTCACTTT 57.302 30.769 0.00 0.00 30.34 2.66
4001 4438 8.697507 AAGAATGTAAGGTTCTCATTTCACTT 57.302 30.769 0.00 0.00 34.97 3.16
4002 4439 8.697507 AAAGAATGTAAGGTTCTCATTTCACT 57.302 30.769 0.00 0.00 34.97 3.41
4003 4440 9.750125 AAAAAGAATGTAAGGTTCTCATTTCAC 57.250 29.630 0.00 0.00 34.97 3.18
4052 4489 9.820229 CTCGTAAAACTTTTGCTAAATGTGATA 57.180 29.630 0.00 0.00 0.00 2.15
4053 4490 8.349983 ACTCGTAAAACTTTTGCTAAATGTGAT 58.650 29.630 0.00 0.00 0.00 3.06
4054 4491 7.699566 ACTCGTAAAACTTTTGCTAAATGTGA 58.300 30.769 0.00 0.00 0.00 3.58
4055 4492 7.908193 ACTCGTAAAACTTTTGCTAAATGTG 57.092 32.000 0.00 0.00 0.00 3.21
4056 4493 8.920509 AAACTCGTAAAACTTTTGCTAAATGT 57.079 26.923 0.00 0.00 0.00 2.71
4060 4497 9.288124 GGTAAAAACTCGTAAAACTTTTGCTAA 57.712 29.630 0.00 0.00 0.00 3.09
4061 4498 8.457261 TGGTAAAAACTCGTAAAACTTTTGCTA 58.543 29.630 0.00 0.00 0.00 3.49
4062 4499 7.274033 GTGGTAAAAACTCGTAAAACTTTTGCT 59.726 33.333 0.00 0.00 0.00 3.91
4063 4500 7.062022 TGTGGTAAAAACTCGTAAAACTTTTGC 59.938 33.333 0.00 0.00 0.00 3.68
4064 4501 8.450385 TGTGGTAAAAACTCGTAAAACTTTTG 57.550 30.769 0.00 0.00 0.00 2.44
4065 4502 8.914654 GTTGTGGTAAAAACTCGTAAAACTTTT 58.085 29.630 0.00 0.00 0.00 2.27
4066 4503 8.298854 AGTTGTGGTAAAAACTCGTAAAACTTT 58.701 29.630 0.00 0.00 30.87 2.66
4067 4504 7.819644 AGTTGTGGTAAAAACTCGTAAAACTT 58.180 30.769 0.00 0.00 30.87 2.66
4068 4505 7.381766 AGTTGTGGTAAAAACTCGTAAAACT 57.618 32.000 0.00 0.00 30.87 2.66
4069 4506 8.603181 TCTAGTTGTGGTAAAAACTCGTAAAAC 58.397 33.333 0.00 0.00 37.74 2.43
4070 4507 8.715191 TCTAGTTGTGGTAAAAACTCGTAAAA 57.285 30.769 0.00 0.00 37.74 1.52
4071 4508 8.603181 GTTCTAGTTGTGGTAAAAACTCGTAAA 58.397 33.333 0.00 0.00 37.74 2.01
4072 4509 7.763528 TGTTCTAGTTGTGGTAAAAACTCGTAA 59.236 33.333 0.00 0.00 37.74 3.18
4073 4510 7.264221 TGTTCTAGTTGTGGTAAAAACTCGTA 58.736 34.615 0.00 0.00 37.74 3.43
4074 4511 6.108015 TGTTCTAGTTGTGGTAAAAACTCGT 58.892 36.000 0.00 0.00 37.74 4.18
4075 4512 6.592798 TGTTCTAGTTGTGGTAAAAACTCG 57.407 37.500 0.00 0.00 37.74 4.18
4076 4513 7.378728 GCATTGTTCTAGTTGTGGTAAAAACTC 59.621 37.037 0.00 0.00 37.74 3.01
4077 4514 7.200455 GCATTGTTCTAGTTGTGGTAAAAACT 58.800 34.615 0.00 0.00 39.82 2.66
4078 4515 6.419710 GGCATTGTTCTAGTTGTGGTAAAAAC 59.580 38.462 0.00 0.00 0.00 2.43
4079 4516 6.461788 GGGCATTGTTCTAGTTGTGGTAAAAA 60.462 38.462 0.00 0.00 0.00 1.94
4080 4517 5.010213 GGGCATTGTTCTAGTTGTGGTAAAA 59.990 40.000 0.00 0.00 0.00 1.52
4081 4518 4.521256 GGGCATTGTTCTAGTTGTGGTAAA 59.479 41.667 0.00 0.00 0.00 2.01
4082 4519 4.076394 GGGCATTGTTCTAGTTGTGGTAA 58.924 43.478 0.00 0.00 0.00 2.85
4083 4520 3.681593 GGGCATTGTTCTAGTTGTGGTA 58.318 45.455 0.00 0.00 0.00 3.25
4084 4521 2.514803 GGGCATTGTTCTAGTTGTGGT 58.485 47.619 0.00 0.00 0.00 4.16
4085 4522 1.468520 CGGGCATTGTTCTAGTTGTGG 59.531 52.381 0.00 0.00 0.00 4.17
4086 4523 2.095768 CACGGGCATTGTTCTAGTTGTG 60.096 50.000 0.00 0.00 0.00 3.33
4087 4524 2.151202 CACGGGCATTGTTCTAGTTGT 58.849 47.619 0.00 0.00 0.00 3.32
4088 4525 1.135689 GCACGGGCATTGTTCTAGTTG 60.136 52.381 3.77 0.00 40.72 3.16
4089 4526 1.165270 GCACGGGCATTGTTCTAGTT 58.835 50.000 3.77 0.00 40.72 2.24
4090 4527 1.019278 CGCACGGGCATTGTTCTAGT 61.019 55.000 11.77 0.00 41.24 2.57
4091 4528 1.019278 ACGCACGGGCATTGTTCTAG 61.019 55.000 11.77 0.00 41.24 2.43
4092 4529 0.604243 AACGCACGGGCATTGTTCTA 60.604 50.000 11.77 0.00 41.24 2.10
4093 4530 1.896660 AACGCACGGGCATTGTTCT 60.897 52.632 11.77 0.00 41.24 3.01
4094 4531 1.729131 CAACGCACGGGCATTGTTC 60.729 57.895 10.90 0.00 38.34 3.18
4095 4532 2.334653 CAACGCACGGGCATTGTT 59.665 55.556 10.90 2.50 38.34 2.83
4096 4533 4.341502 GCAACGCACGGGCATTGT 62.342 61.111 20.63 0.74 44.58 2.71
4097 4534 3.837908 TTGCAACGCACGGGCATTG 62.838 57.895 15.24 15.24 45.48 2.82
4098 4535 3.600694 TTGCAACGCACGGGCATT 61.601 55.556 11.77 0.00 38.71 3.56
4099 4536 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
4105 4542 7.149192 GAATATTTATATTCCGTTGCAACGCAC 60.149 37.037 39.42 11.40 40.86 5.34
4106 4543 6.853872 GAATATTTATATTCCGTTGCAACGCA 59.146 34.615 39.42 28.39 40.86 5.24
4107 4544 7.075741 AGAATATTTATATTCCGTTGCAACGC 58.924 34.615 39.42 23.00 46.13 4.84
4108 4545 9.741168 CTAGAATATTTATATTCCGTTGCAACG 57.259 33.333 38.24 38.24 46.13 4.10
4127 4564 9.740710 TGCTCTAACATGCTAGATACTAGAATA 57.259 33.333 6.30 0.00 0.00 1.75
4128 4565 8.642935 TGCTCTAACATGCTAGATACTAGAAT 57.357 34.615 6.30 2.14 0.00 2.40
4129 4566 8.642935 ATGCTCTAACATGCTAGATACTAGAA 57.357 34.615 6.30 0.00 0.00 2.10
4130 4567 8.106462 AGATGCTCTAACATGCTAGATACTAGA 58.894 37.037 6.30 0.00 0.00 2.43
4131 4568 8.279970 AGATGCTCTAACATGCTAGATACTAG 57.720 38.462 6.30 0.00 0.00 2.57
4132 4569 7.338196 GGAGATGCTCTAACATGCTAGATACTA 59.662 40.741 6.30 0.00 0.00 1.82
4133 4570 6.152661 GGAGATGCTCTAACATGCTAGATACT 59.847 42.308 6.30 4.40 0.00 2.12
4134 4571 6.071672 TGGAGATGCTCTAACATGCTAGATAC 60.072 42.308 6.30 3.43 0.00 2.24
4135 4572 6.012745 TGGAGATGCTCTAACATGCTAGATA 58.987 40.000 6.30 0.42 0.00 1.98
4136 4573 4.837298 TGGAGATGCTCTAACATGCTAGAT 59.163 41.667 6.30 0.00 0.00 1.98
4137 4574 4.218312 TGGAGATGCTCTAACATGCTAGA 58.782 43.478 5.74 5.74 0.00 2.43
4138 4575 4.597404 TGGAGATGCTCTAACATGCTAG 57.403 45.455 0.00 0.00 0.00 3.42
4139 4576 5.557576 ATTGGAGATGCTCTAACATGCTA 57.442 39.130 0.00 0.00 34.03 3.49
4140 4577 3.920231 TTGGAGATGCTCTAACATGCT 57.080 42.857 0.00 0.00 0.00 3.79
4141 4578 5.407995 GTCTATTGGAGATGCTCTAACATGC 59.592 44.000 0.00 0.00 34.03 4.06
4142 4579 5.632764 CGTCTATTGGAGATGCTCTAACATG 59.367 44.000 0.00 0.00 34.03 3.21
4143 4580 5.279206 CCGTCTATTGGAGATGCTCTAACAT 60.279 44.000 0.00 0.00 39.57 2.71
4144 4581 4.038042 CCGTCTATTGGAGATGCTCTAACA 59.962 45.833 0.00 0.00 39.57 2.41
4145 4582 4.038162 ACCGTCTATTGGAGATGCTCTAAC 59.962 45.833 0.00 0.00 39.57 2.34
4146 4583 4.215908 ACCGTCTATTGGAGATGCTCTAA 58.784 43.478 0.00 0.00 39.57 2.10
4147 4584 3.833732 ACCGTCTATTGGAGATGCTCTA 58.166 45.455 0.00 0.00 39.57 2.43
4148 4585 2.672098 ACCGTCTATTGGAGATGCTCT 58.328 47.619 0.00 0.00 39.57 4.09
4149 4586 3.460857 AACCGTCTATTGGAGATGCTC 57.539 47.619 0.00 0.00 39.57 4.26
4150 4587 5.552870 ATTAACCGTCTATTGGAGATGCT 57.447 39.130 0.00 0.00 39.57 3.79
4151 4588 6.874134 ACATATTAACCGTCTATTGGAGATGC 59.126 38.462 0.00 0.00 39.57 3.91
4152 4589 9.923143 TTACATATTAACCGTCTATTGGAGATG 57.077 33.333 0.00 0.00 40.46 2.90
4188 4625 3.194005 TGCTCTCGAAACTTCCAAAGT 57.806 42.857 0.00 0.00 45.46 2.66
4189 4626 4.552166 TTTGCTCTCGAAACTTCCAAAG 57.448 40.909 0.00 0.00 0.00 2.77
4190 4627 4.974368 TTTTGCTCTCGAAACTTCCAAA 57.026 36.364 0.00 0.00 0.00 3.28
4191 4628 4.733523 GCTTTTTGCTCTCGAAACTTCCAA 60.734 41.667 0.00 0.00 38.95 3.53
4192 4629 3.243068 GCTTTTTGCTCTCGAAACTTCCA 60.243 43.478 0.00 0.00 38.95 3.53
4193 4630 3.300857 GCTTTTTGCTCTCGAAACTTCC 58.699 45.455 0.00 0.00 38.95 3.46
4212 4649 1.202698 ACGGTCTCTTGAAGCAAAGCT 60.203 47.619 0.00 0.00 42.56 3.74
4213 4650 1.195674 GACGGTCTCTTGAAGCAAAGC 59.804 52.381 0.00 0.00 0.00 3.51
4214 4651 1.801178 GGACGGTCTCTTGAAGCAAAG 59.199 52.381 8.23 0.00 0.00 2.77
4215 4652 1.140052 TGGACGGTCTCTTGAAGCAAA 59.860 47.619 8.23 0.00 0.00 3.68
4216 4653 0.756294 TGGACGGTCTCTTGAAGCAA 59.244 50.000 8.23 0.00 0.00 3.91
4217 4654 0.976641 ATGGACGGTCTCTTGAAGCA 59.023 50.000 8.23 0.00 0.00 3.91
4218 4655 2.961526 TATGGACGGTCTCTTGAAGC 57.038 50.000 8.23 0.00 0.00 3.86
4219 4656 4.392921 ACATATGGACGGTCTCTTGAAG 57.607 45.455 7.80 0.00 0.00 3.02
4220 4657 5.925506 TTACATATGGACGGTCTCTTGAA 57.074 39.130 7.80 0.00 0.00 2.69
4221 4658 5.925506 TTTACATATGGACGGTCTCTTGA 57.074 39.130 7.80 0.00 0.00 3.02
4222 4659 6.978343 TTTTTACATATGGACGGTCTCTTG 57.022 37.500 7.80 4.12 0.00 3.02
4244 4681 2.233676 GGAGGCGATGGTCCAAATTTTT 59.766 45.455 0.00 0.00 32.55 1.94
4245 4682 1.824852 GGAGGCGATGGTCCAAATTTT 59.175 47.619 0.00 0.00 32.55 1.82
4246 4683 1.005924 AGGAGGCGATGGTCCAAATTT 59.994 47.619 0.00 0.00 35.02 1.82
4247 4684 0.625849 AGGAGGCGATGGTCCAAATT 59.374 50.000 0.00 0.00 35.02 1.82
4248 4685 0.107017 CAGGAGGCGATGGTCCAAAT 60.107 55.000 0.00 0.00 35.02 2.32
4249 4686 1.299648 CAGGAGGCGATGGTCCAAA 59.700 57.895 0.00 0.00 35.02 3.28
4250 4687 2.669133 CCAGGAGGCGATGGTCCAA 61.669 63.158 0.00 0.00 35.02 3.53
4251 4688 3.083349 CCAGGAGGCGATGGTCCA 61.083 66.667 0.00 0.00 35.02 4.02
4252 4689 2.764128 TCCAGGAGGCGATGGTCC 60.764 66.667 5.74 0.00 37.84 4.46
4253 4690 1.118356 ATCTCCAGGAGGCGATGGTC 61.118 60.000 17.10 0.00 37.94 4.02
4254 4691 1.074926 ATCTCCAGGAGGCGATGGT 60.075 57.895 17.10 0.00 37.94 3.55
4255 4692 3.882825 ATCTCCAGGAGGCGATGG 58.117 61.111 17.10 0.00 37.94 3.51
4257 4694 2.088104 TTACATCTCCAGGAGGCGAT 57.912 50.000 17.10 0.00 39.93 4.58
4258 4695 1.860641 TTTACATCTCCAGGAGGCGA 58.139 50.000 17.10 0.00 32.19 5.54
4259 4696 2.691409 TTTTACATCTCCAGGAGGCG 57.309 50.000 17.10 10.28 33.74 5.52
4260 4697 4.526970 TCAATTTTACATCTCCAGGAGGC 58.473 43.478 17.10 0.00 33.74 4.70
4261 4698 7.177392 AGTTTTCAATTTTACATCTCCAGGAGG 59.823 37.037 17.10 3.83 0.00 4.30
4262 4699 8.115490 AGTTTTCAATTTTACATCTCCAGGAG 57.885 34.615 10.70 10.70 0.00 3.69
4263 4700 8.477419 AAGTTTTCAATTTTACATCTCCAGGA 57.523 30.769 0.00 0.00 0.00 3.86
4264 4701 7.538678 CGAAGTTTTCAATTTTACATCTCCAGG 59.461 37.037 0.00 0.00 0.00 4.45
4265 4702 8.076178 ACGAAGTTTTCAATTTTACATCTCCAG 58.924 33.333 0.00 0.00 37.78 3.86
4266 4703 7.860373 CACGAAGTTTTCAATTTTACATCTCCA 59.140 33.333 0.00 0.00 41.61 3.86
4267 4704 8.073768 TCACGAAGTTTTCAATTTTACATCTCC 58.926 33.333 0.00 0.00 41.61 3.71
4268 4705 9.612620 ATCACGAAGTTTTCAATTTTACATCTC 57.387 29.630 0.00 0.00 41.61 2.75
4269 4706 9.398170 CATCACGAAGTTTTCAATTTTACATCT 57.602 29.630 0.00 0.00 41.61 2.90
4270 4707 8.155923 GCATCACGAAGTTTTCAATTTTACATC 58.844 33.333 0.00 0.00 41.61 3.06
4271 4708 7.651304 TGCATCACGAAGTTTTCAATTTTACAT 59.349 29.630 0.00 0.00 41.61 2.29
4272 4709 6.975197 TGCATCACGAAGTTTTCAATTTTACA 59.025 30.769 0.00 0.00 41.61 2.41
4273 4710 7.388290 TGCATCACGAAGTTTTCAATTTTAC 57.612 32.000 0.00 0.00 41.61 2.01
4274 4711 7.993821 TTGCATCACGAAGTTTTCAATTTTA 57.006 28.000 0.00 0.00 41.61 1.52
4275 4712 6.900568 TTGCATCACGAAGTTTTCAATTTT 57.099 29.167 0.00 0.00 41.61 1.82
4276 4713 6.900568 TTTGCATCACGAAGTTTTCAATTT 57.099 29.167 0.00 0.00 41.61 1.82
4277 4714 7.481275 AATTTGCATCACGAAGTTTTCAATT 57.519 28.000 0.00 0.00 41.61 2.32
4278 4715 7.481275 AAATTTGCATCACGAAGTTTTCAAT 57.519 28.000 0.00 0.00 41.61 2.57
4279 4716 6.900568 AAATTTGCATCACGAAGTTTTCAA 57.099 29.167 0.00 0.00 41.61 2.69
4280 4717 6.975197 TGTAAATTTGCATCACGAAGTTTTCA 59.025 30.769 4.71 0.00 41.61 2.69
4281 4718 7.388290 TGTAAATTTGCATCACGAAGTTTTC 57.612 32.000 4.71 0.00 41.61 2.29
4282 4719 7.945033 ATGTAAATTTGCATCACGAAGTTTT 57.055 28.000 15.12 0.00 41.61 2.43
4283 4720 7.566858 GATGTAAATTTGCATCACGAAGTTT 57.433 32.000 31.99 7.66 45.73 2.66
4292 4729 7.630026 TGTATCTCGTGATGTAAATTTGCATC 58.370 34.615 30.97 30.97 46.34 3.91
4293 4730 7.552458 TGTATCTCGTGATGTAAATTTGCAT 57.448 32.000 20.00 20.00 36.18 3.96
4294 4731 6.976636 TGTATCTCGTGATGTAAATTTGCA 57.023 33.333 11.51 11.51 34.32 4.08
4295 4732 7.240674 TGTTGTATCTCGTGATGTAAATTTGC 58.759 34.615 10.16 0.00 34.32 3.68
4296 4733 8.655970 TCTGTTGTATCTCGTGATGTAAATTTG 58.344 33.333 10.16 0.00 34.32 2.32
4297 4734 8.771920 TCTGTTGTATCTCGTGATGTAAATTT 57.228 30.769 10.16 0.00 34.32 1.82
4298 4735 8.820933 CATCTGTTGTATCTCGTGATGTAAATT 58.179 33.333 10.16 0.00 34.32 1.82
4299 4736 7.981789 ACATCTGTTGTATCTCGTGATGTAAAT 59.018 33.333 10.16 0.00 40.46 1.40
4300 4737 7.320399 ACATCTGTTGTATCTCGTGATGTAAA 58.680 34.615 10.16 0.00 40.46 2.01
4301 4738 6.863275 ACATCTGTTGTATCTCGTGATGTAA 58.137 36.000 10.16 2.78 40.46 2.41
4302 4739 6.451064 ACATCTGTTGTATCTCGTGATGTA 57.549 37.500 10.16 0.00 40.46 2.29
4303 4740 5.330455 ACATCTGTTGTATCTCGTGATGT 57.670 39.130 10.16 0.00 36.57 3.06
4304 4741 7.755582 TTTACATCTGTTGTATCTCGTGATG 57.244 36.000 10.16 0.00 40.46 3.07
4305 4742 7.277981 GGTTTTACATCTGTTGTATCTCGTGAT 59.722 37.037 5.20 5.20 40.46 3.06
4306 4743 6.588756 GGTTTTACATCTGTTGTATCTCGTGA 59.411 38.462 0.00 0.00 40.46 4.35
4307 4744 6.453791 CGGTTTTACATCTGTTGTATCTCGTG 60.454 42.308 0.00 0.00 40.46 4.35
4308 4745 5.575606 CGGTTTTACATCTGTTGTATCTCGT 59.424 40.000 0.00 0.00 40.46 4.18
4309 4746 5.500290 GCGGTTTTACATCTGTTGTATCTCG 60.500 44.000 0.00 4.21 40.46 4.04
4310 4747 5.500290 CGCGGTTTTACATCTGTTGTATCTC 60.500 44.000 0.00 0.00 40.46 2.75
4311 4748 4.328983 CGCGGTTTTACATCTGTTGTATCT 59.671 41.667 0.00 0.00 40.46 1.98
4312 4749 4.493545 CCGCGGTTTTACATCTGTTGTATC 60.494 45.833 19.50 0.00 40.46 2.24
4313 4750 3.372822 CCGCGGTTTTACATCTGTTGTAT 59.627 43.478 19.50 0.00 40.46 2.29
4314 4751 2.737783 CCGCGGTTTTACATCTGTTGTA 59.262 45.455 19.50 0.00 39.87 2.41
4315 4752 1.533731 CCGCGGTTTTACATCTGTTGT 59.466 47.619 19.50 0.00 42.62 3.32
4316 4753 1.727857 GCCGCGGTTTTACATCTGTTG 60.728 52.381 28.70 0.00 0.00 3.33
4317 4754 0.519961 GCCGCGGTTTTACATCTGTT 59.480 50.000 28.70 0.00 0.00 3.16
4318 4755 1.303091 GGCCGCGGTTTTACATCTGT 61.303 55.000 28.70 0.00 0.00 3.41
4319 4756 1.427819 GGCCGCGGTTTTACATCTG 59.572 57.895 28.70 0.00 0.00 2.90
4320 4757 2.104253 CGGCCGCGGTTTTACATCT 61.104 57.895 28.70 0.00 0.00 2.90
4321 4758 2.401990 CGGCCGCGGTTTTACATC 59.598 61.111 28.70 6.82 0.00 3.06
4322 4759 3.806422 GCGGCCGCGGTTTTACAT 61.806 61.111 37.24 0.00 0.00 2.29
4338 4775 4.337060 GTTGGTCGTTTGGCGGGC 62.337 66.667 0.00 0.00 41.72 6.13
4339 4776 3.666253 GGTTGGTCGTTTGGCGGG 61.666 66.667 0.00 0.00 41.72 6.13
4340 4777 4.020378 CGGTTGGTCGTTTGGCGG 62.020 66.667 0.00 0.00 41.72 6.13
4341 4778 4.676586 GCGGTTGGTCGTTTGGCG 62.677 66.667 0.00 0.00 43.01 5.69
4342 4779 4.337060 GGCGGTTGGTCGTTTGGC 62.337 66.667 0.00 0.00 0.00 4.52
4343 4780 2.902846 TGGCGGTTGGTCGTTTGG 60.903 61.111 0.00 0.00 0.00 3.28
4344 4781 1.720694 AAGTGGCGGTTGGTCGTTTG 61.721 55.000 0.00 0.00 0.00 2.93
4345 4782 1.441732 GAAGTGGCGGTTGGTCGTTT 61.442 55.000 0.00 0.00 0.00 3.60
4346 4783 1.890510 GAAGTGGCGGTTGGTCGTT 60.891 57.895 0.00 0.00 0.00 3.85
4347 4784 2.280592 GAAGTGGCGGTTGGTCGT 60.281 61.111 0.00 0.00 0.00 4.34
4348 4785 1.234615 AATGAAGTGGCGGTTGGTCG 61.235 55.000 0.00 0.00 0.00 4.79
4349 4786 0.521735 GAATGAAGTGGCGGTTGGTC 59.478 55.000 0.00 0.00 0.00 4.02
4350 4787 0.893727 GGAATGAAGTGGCGGTTGGT 60.894 55.000 0.00 0.00 0.00 3.67
4351 4788 1.595093 GGGAATGAAGTGGCGGTTGG 61.595 60.000 0.00 0.00 0.00 3.77
4352 4789 1.595093 GGGGAATGAAGTGGCGGTTG 61.595 60.000 0.00 0.00 0.00 3.77
4353 4790 1.304134 GGGGAATGAAGTGGCGGTT 60.304 57.895 0.00 0.00 0.00 4.44
4354 4791 1.789576 AAGGGGAATGAAGTGGCGGT 61.790 55.000 0.00 0.00 0.00 5.68
4355 4792 1.000896 AAGGGGAATGAAGTGGCGG 60.001 57.895 0.00 0.00 0.00 6.13
4356 4793 1.032114 GGAAGGGGAATGAAGTGGCG 61.032 60.000 0.00 0.00 0.00 5.69
4357 4794 1.032114 CGGAAGGGGAATGAAGTGGC 61.032 60.000 0.00 0.00 0.00 5.01
4358 4795 1.032114 GCGGAAGGGGAATGAAGTGG 61.032 60.000 0.00 0.00 0.00 4.00
4359 4796 1.032114 GGCGGAAGGGGAATGAAGTG 61.032 60.000 0.00 0.00 0.00 3.16
4360 4797 1.208165 AGGCGGAAGGGGAATGAAGT 61.208 55.000 0.00 0.00 0.00 3.01
4361 4798 0.464554 GAGGCGGAAGGGGAATGAAG 60.465 60.000 0.00 0.00 0.00 3.02
4362 4799 1.607612 GAGGCGGAAGGGGAATGAA 59.392 57.895 0.00 0.00 0.00 2.57
4363 4800 2.731571 CGAGGCGGAAGGGGAATGA 61.732 63.158 0.00 0.00 0.00 2.57
4364 4801 2.203070 CGAGGCGGAAGGGGAATG 60.203 66.667 0.00 0.00 0.00 2.67
4365 4802 2.687566 ACGAGGCGGAAGGGGAAT 60.688 61.111 0.00 0.00 0.00 3.01
4366 4803 3.702048 CACGAGGCGGAAGGGGAA 61.702 66.667 0.00 0.00 0.00 3.97
4367 4804 4.689549 TCACGAGGCGGAAGGGGA 62.690 66.667 0.00 0.00 0.00 4.81
4368 4805 4.452733 GTCACGAGGCGGAAGGGG 62.453 72.222 0.00 0.00 0.00 4.79
4369 4806 4.452733 GGTCACGAGGCGGAAGGG 62.453 72.222 0.00 0.00 0.00 3.95
4370 4807 4.796231 CGGTCACGAGGCGGAAGG 62.796 72.222 0.00 0.00 44.60 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.