Multiple sequence alignment - TraesCS1D01G201800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G201800 chr1D 100.000 4565 0 0 1 4565 284915632 284920196 0.000000e+00 8431.0
1 TraesCS1D01G201800 chr1D 78.205 312 60 7 4207 4516 71042868 71042563 4.660000e-45 193.0
2 TraesCS1D01G201800 chr1A 95.177 3297 119 19 317 3580 356427350 356430639 0.000000e+00 5171.0
3 TraesCS1D01G201800 chr1A 87.055 618 48 14 3551 4146 356430860 356431467 0.000000e+00 669.0
4 TraesCS1D01G201800 chr1A 81.641 463 72 12 3747 4199 276615186 276615645 5.580000e-99 372.0
5 TraesCS1D01G201800 chr1A 85.475 358 48 3 3846 4199 203811158 203810801 2.010000e-98 370.0
6 TraesCS1D01G201800 chr1B 94.674 3004 118 17 1234 4212 386791993 386794979 0.000000e+00 4623.0
7 TraesCS1D01G201800 chr1B 93.290 924 46 9 314 1223 386791024 386791945 0.000000e+00 1349.0
8 TraesCS1D01G201800 chr1B 85.915 355 47 2 3846 4197 345304706 345305060 4.310000e-100 375.0
9 TraesCS1D01G201800 chr1B 89.785 186 8 3 19 200 386790847 386791025 1.280000e-55 228.0
10 TraesCS1D01G201800 chr1B 100.000 30 0 0 1 30 386783696 386783725 6.380000e-04 56.5
11 TraesCS1D01G201800 chr7A 84.137 498 61 12 3723 4207 117353586 117353094 2.490000e-127 466.0
12 TraesCS1D01G201800 chr7A 76.404 356 73 11 4204 4553 183861798 183862148 1.010000e-41 182.0
13 TraesCS1D01G201800 chr7A 75.749 334 74 6 4227 4559 700106806 700107133 1.310000e-35 161.0
14 TraesCS1D01G201800 chr7A 74.022 358 87 6 4204 4559 77030884 77030531 1.710000e-29 141.0
15 TraesCS1D01G201800 chr5D 87.115 357 41 4 3860 4212 317657353 317657708 2.560000e-107 399.0
16 TraesCS1D01G201800 chr5D 79.022 634 90 22 3723 4350 396897256 396896660 1.190000e-105 394.0
17 TraesCS1D01G201800 chr4D 81.557 488 67 14 3723 4199 293377764 293378239 9.270000e-102 381.0
18 TraesCS1D01G201800 chr4D 99.167 120 1 0 196 315 72256127 72256246 2.770000e-52 217.0
19 TraesCS1D01G201800 chr5B 84.483 232 35 1 4324 4555 711877428 711877198 1.280000e-55 228.0
20 TraesCS1D01G201800 chr6B 100.000 119 0 0 197 315 343032969 343032851 2.140000e-53 220.0
21 TraesCS1D01G201800 chr6B 77.311 357 69 9 4208 4559 77713329 77713678 2.790000e-47 200.0
22 TraesCS1D01G201800 chr6D 100.000 117 0 0 199 315 36114516 36114632 2.770000e-52 217.0
23 TraesCS1D01G201800 chr3B 98.361 122 2 0 194 315 725714308 725714429 9.950000e-52 215.0
24 TraesCS1D01G201800 chr3B 97.581 124 3 0 195 318 475817009 475816886 3.580000e-51 213.0
25 TraesCS1D01G201800 chr3B 98.333 120 2 0 196 315 454651853 454651972 1.290000e-50 211.0
26 TraesCS1D01G201800 chr7B 96.183 131 3 2 198 327 252178173 252178044 3.580000e-51 213.0
27 TraesCS1D01G201800 chr2D 96.850 127 3 1 192 318 599307156 599307281 1.290000e-50 211.0
28 TraesCS1D01G201800 chr2D 77.624 362 64 17 4204 4556 353285914 353285561 2.150000e-48 204.0
29 TraesCS1D01G201800 chr2B 93.617 141 6 2 182 319 142446619 142446759 1.660000e-49 207.0
30 TraesCS1D01G201800 chr2B 77.340 203 25 7 3750 3939 383008730 383008924 2.910000e-17 100.0
31 TraesCS1D01G201800 chr4B 76.608 342 73 6 4213 4553 273653729 273654064 1.010000e-41 182.0
32 TraesCS1D01G201800 chr6A 75.562 356 76 11 4204 4553 461844358 461844708 1.020000e-36 165.0
33 TraesCS1D01G201800 chr4A 81.046 153 24 3 4204 4353 744512731 744512581 2.890000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G201800 chr1D 284915632 284920196 4564 False 8431.000000 8431 100.000 1 4565 1 chr1D.!!$F1 4564
1 TraesCS1D01G201800 chr1A 356427350 356431467 4117 False 2920.000000 5171 91.116 317 4146 2 chr1A.!!$F2 3829
2 TraesCS1D01G201800 chr1B 386790847 386794979 4132 False 2066.666667 4623 92.583 19 4212 3 chr1B.!!$F3 4193
3 TraesCS1D01G201800 chr5D 396896660 396897256 596 True 394.000000 394 79.022 3723 4350 1 chr5D.!!$R1 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 220 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30 F
220 225 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 F
311 316 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 F
916 947 0.253327 GTGTGAATCTCTCCACCCCC 59.747 60.000 0.00 0.00 32.61 5.40 F
1558 1632 1.958205 GGCCATCGAGATCAAGCGG 60.958 63.158 0.00 0.00 0.00 5.52 F
3159 3239 0.107456 GGTGATCATCCTGATGCCGT 59.893 55.000 0.00 0.00 37.20 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1306 1380 2.171027 ACGTTTCTCCAACCACACCTAA 59.829 45.455 0.00 0.0 30.65 2.69 R
2095 2169 3.265995 GGGAGGGACAATTAAGGAAGACA 59.734 47.826 0.00 0.0 0.00 3.41 R
2207 2287 3.807538 GTCGACGACGGCCTAGCA 61.808 66.667 12.94 0.0 38.25 3.49 R
2405 2485 0.935898 CCATGAAGAGCATCGTGAGC 59.064 55.000 0.00 0.0 42.67 4.26 R
3287 3367 1.372087 GCAGCTGCTGGTATCGCTTT 61.372 55.000 31.33 0.0 38.21 3.51 R
4214 4567 0.035056 CTCTTTGGTGGGGGTAGCAG 60.035 60.000 0.00 0.0 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 6.711645 AGCGGTTAACTATCTTAAACCAACAA 59.288 34.615 5.42 0.00 0.00 2.83
52 53 7.695201 GCGGTTAACTATCTTAAACCAACAATC 59.305 37.037 5.42 0.00 0.00 2.67
126 131 7.696992 TTTAAAGAAAGGTCATACACATCCC 57.303 36.000 0.00 0.00 0.00 3.85
161 166 6.179906 AGGAATGGAGTATGTCGAAATGAT 57.820 37.500 0.00 0.00 0.00 2.45
162 167 5.994054 AGGAATGGAGTATGTCGAAATGATG 59.006 40.000 0.00 0.00 0.00 3.07
163 168 5.334414 GGAATGGAGTATGTCGAAATGATGC 60.334 44.000 0.00 0.00 0.00 3.91
164 169 4.406648 TGGAGTATGTCGAAATGATGCT 57.593 40.909 0.00 0.00 0.00 3.79
165 170 4.769688 TGGAGTATGTCGAAATGATGCTT 58.230 39.130 0.00 0.00 0.00 3.91
166 171 5.185454 TGGAGTATGTCGAAATGATGCTTT 58.815 37.500 0.00 0.00 0.00 3.51
167 172 5.647658 TGGAGTATGTCGAAATGATGCTTTT 59.352 36.000 0.00 0.00 0.00 2.27
191 196 3.788142 ACCTCTTTGGGGTGACATATCAT 59.212 43.478 0.00 0.00 41.11 2.45
203 208 9.614792 GGGGTGACATATCATTTATAATACTCC 57.385 37.037 0.00 0.00 37.14 3.85
204 209 9.614792 GGGTGACATATCATTTATAATACTCCC 57.385 37.037 0.00 0.00 37.14 4.30
208 213 9.751542 GACATATCATTTATAATACTCCCTCCG 57.248 37.037 0.00 0.00 0.00 4.63
209 214 9.268282 ACATATCATTTATAATACTCCCTCCGT 57.732 33.333 0.00 0.00 0.00 4.69
210 215 9.751542 CATATCATTTATAATACTCCCTCCGTC 57.248 37.037 0.00 0.00 0.00 4.79
211 216 6.600882 TCATTTATAATACTCCCTCCGTCC 57.399 41.667 0.00 0.00 0.00 4.79
212 217 5.184479 TCATTTATAATACTCCCTCCGTCCG 59.816 44.000 0.00 0.00 0.00 4.79
213 218 1.920610 ATAATACTCCCTCCGTCCGG 58.079 55.000 0.00 0.00 0.00 5.14
214 219 0.846015 TAATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
215 220 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
216 221 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
217 222 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
218 223 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
219 224 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
220 225 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
221 226 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
222 227 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
223 228 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
224 229 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
225 230 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
226 231 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
227 232 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
228 233 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
229 234 1.479323 TCCGGAAATACTTGTCGGAGG 59.521 52.381 0.00 0.00 43.84 4.30
230 235 1.479323 CCGGAAATACTTGTCGGAGGA 59.521 52.381 0.00 0.00 42.94 3.71
231 236 2.093869 CCGGAAATACTTGTCGGAGGAA 60.094 50.000 0.00 0.00 42.94 3.36
232 237 3.431766 CCGGAAATACTTGTCGGAGGAAT 60.432 47.826 0.00 0.00 42.94 3.01
233 238 3.555956 CGGAAATACTTGTCGGAGGAATG 59.444 47.826 0.00 0.00 0.00 2.67
234 239 3.877508 GGAAATACTTGTCGGAGGAATGG 59.122 47.826 0.00 0.00 0.00 3.16
235 240 4.383770 GGAAATACTTGTCGGAGGAATGGA 60.384 45.833 0.00 0.00 0.00 3.41
236 241 5.368989 GAAATACTTGTCGGAGGAATGGAT 58.631 41.667 0.00 0.00 0.00 3.41
237 242 2.698855 ACTTGTCGGAGGAATGGATG 57.301 50.000 0.00 0.00 0.00 3.51
238 243 1.909302 ACTTGTCGGAGGAATGGATGT 59.091 47.619 0.00 0.00 0.00 3.06
239 244 3.104512 ACTTGTCGGAGGAATGGATGTA 58.895 45.455 0.00 0.00 0.00 2.29
240 245 3.711704 ACTTGTCGGAGGAATGGATGTAT 59.288 43.478 0.00 0.00 0.00 2.29
241 246 4.202264 ACTTGTCGGAGGAATGGATGTATC 60.202 45.833 0.00 0.00 0.00 2.24
242 247 3.576861 TGTCGGAGGAATGGATGTATCT 58.423 45.455 0.00 0.00 0.00 1.98
243 248 4.736473 TGTCGGAGGAATGGATGTATCTA 58.264 43.478 0.00 0.00 0.00 1.98
244 249 4.767409 TGTCGGAGGAATGGATGTATCTAG 59.233 45.833 0.00 0.00 0.00 2.43
245 250 5.010933 GTCGGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 0.00 2.43
246 251 5.010933 TCGGAGGAATGGATGTATCTAGAC 58.989 45.833 0.00 0.00 0.00 2.59
247 252 4.142578 CGGAGGAATGGATGTATCTAGACG 60.143 50.000 0.00 0.00 0.00 4.18
248 253 4.767928 GGAGGAATGGATGTATCTAGACGT 59.232 45.833 0.00 0.00 0.00 4.34
249 254 5.944599 GGAGGAATGGATGTATCTAGACGTA 59.055 44.000 0.00 0.00 0.00 3.57
250 255 6.603997 GGAGGAATGGATGTATCTAGACGTAT 59.396 42.308 0.00 0.00 0.00 3.06
251 256 7.122948 GGAGGAATGGATGTATCTAGACGTATT 59.877 40.741 0.00 0.00 0.00 1.89
252 257 8.423906 AGGAATGGATGTATCTAGACGTATTT 57.576 34.615 0.00 0.00 0.00 1.40
253 258 8.871125 AGGAATGGATGTATCTAGACGTATTTT 58.129 33.333 0.00 0.00 0.00 1.82
280 285 9.851686 AGTTCTAGATACATCCATTTTTATGCA 57.148 29.630 0.00 0.00 0.00 3.96
288 293 7.306205 ACATCCATTTTTATGCATTTTTCCG 57.694 32.000 3.54 0.00 0.00 4.30
289 294 7.102346 ACATCCATTTTTATGCATTTTTCCGA 58.898 30.769 3.54 0.00 0.00 4.55
290 295 6.959671 TCCATTTTTATGCATTTTTCCGAC 57.040 33.333 3.54 0.00 0.00 4.79
291 296 6.459066 TCCATTTTTATGCATTTTTCCGACA 58.541 32.000 3.54 0.00 0.00 4.35
292 297 6.931281 TCCATTTTTATGCATTTTTCCGACAA 59.069 30.769 3.54 0.00 0.00 3.18
293 298 7.117523 TCCATTTTTATGCATTTTTCCGACAAG 59.882 33.333 3.54 0.00 0.00 3.16
294 299 7.095271 CCATTTTTATGCATTTTTCCGACAAGT 60.095 33.333 3.54 0.00 0.00 3.16
295 300 8.920665 CATTTTTATGCATTTTTCCGACAAGTA 58.079 29.630 3.54 0.00 0.00 2.24
296 301 9.651913 ATTTTTATGCATTTTTCCGACAAGTAT 57.348 25.926 3.54 0.00 0.00 2.12
297 302 9.482627 TTTTTATGCATTTTTCCGACAAGTATT 57.517 25.926 3.54 0.00 0.00 1.89
298 303 9.482627 TTTTATGCATTTTTCCGACAAGTATTT 57.517 25.926 3.54 0.00 0.00 1.40
299 304 8.682128 TTATGCATTTTTCCGACAAGTATTTC 57.318 30.769 3.54 0.00 0.00 2.17
300 305 5.465935 TGCATTTTTCCGACAAGTATTTCC 58.534 37.500 0.00 0.00 0.00 3.13
301 306 4.557301 GCATTTTTCCGACAAGTATTTCCG 59.443 41.667 0.00 0.00 0.00 4.30
302 307 4.752661 TTTTTCCGACAAGTATTTCCGG 57.247 40.909 0.00 0.00 41.36 5.14
303 308 3.681593 TTTCCGACAAGTATTTCCGGA 57.318 42.857 0.00 0.00 46.18 5.14
304 309 2.660189 TCCGACAAGTATTTCCGGAC 57.340 50.000 1.83 0.00 43.47 4.79
305 310 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
306 311 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
307 312 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
308 313 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
309 314 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
310 315 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
311 316 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
312 317 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
353 358 2.273370 TCAGATTCCGTCGTAAGTGC 57.727 50.000 0.00 0.00 39.48 4.40
376 381 8.341173 GTGCAGATTCTGGAGTAAAGAAATATG 58.659 37.037 15.28 0.00 37.22 1.78
454 473 7.095481 CCATTTCGTATTACAGTGGATCATGAG 60.095 40.741 0.09 0.00 0.00 2.90
474 493 6.702449 TGAGGCCTACCATGATTATACATT 57.298 37.500 4.42 0.00 39.06 2.71
479 498 6.127897 GGCCTACCATGATTATACATTGCTTC 60.128 42.308 0.00 0.00 35.26 3.86
540 561 3.977244 AAGTTTTGCGCGGCAGGG 61.977 61.111 8.83 0.00 40.61 4.45
717 739 5.449177 CGAAATAGCCCAAGTCAAAGATTCC 60.449 44.000 0.00 0.00 0.00 3.01
719 741 1.713078 AGCCCAAGTCAAAGATTCCCT 59.287 47.619 0.00 0.00 0.00 4.20
721 743 2.359900 CCCAAGTCAAAGATTCCCTCG 58.640 52.381 0.00 0.00 0.00 4.63
833 855 1.097232 TATATATACGGTGGCGCGCT 58.903 50.000 32.29 13.63 0.00 5.92
916 947 0.253327 GTGTGAATCTCTCCACCCCC 59.747 60.000 0.00 0.00 32.61 5.40
1306 1380 5.236478 ACTGACGAAAACGAGAAAATGATGT 59.764 36.000 0.00 0.00 0.00 3.06
1558 1632 1.958205 GGCCATCGAGATCAAGCGG 60.958 63.158 0.00 0.00 0.00 5.52
1601 1675 3.838271 GCGAGATCGTCAGGGCCA 61.838 66.667 6.18 0.00 42.22 5.36
2405 2485 3.465403 CCTGGCTCCGTCCTCCTG 61.465 72.222 0.00 0.00 0.00 3.86
2569 2649 2.374830 ATCCTCGCCTTCGGATGCTG 62.375 60.000 0.00 0.00 38.56 4.41
3026 3106 2.776526 TGGGGCCTGGTGTTCACT 60.777 61.111 0.84 0.00 0.00 3.41
3159 3239 0.107456 GGTGATCATCCTGATGCCGT 59.893 55.000 0.00 0.00 37.20 5.68
3293 3373 4.752879 CCCGAGGCCGAAAAGCGA 62.753 66.667 0.00 0.00 44.57 4.93
3368 3448 1.153289 GGCAGATGACAGCGACCAT 60.153 57.895 0.78 0.00 0.00 3.55
3401 3481 8.873215 AGAACTTAAATGGTCGATGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
3402 3482 8.475639 AGAACTTAAATGGTCGATGTATGTAGT 58.524 33.333 0.00 0.00 0.00 2.73
3405 3485 9.909644 ACTTAAATGGTCGATGTATGTAGTATC 57.090 33.333 0.00 0.00 0.00 2.24
3406 3486 9.908152 CTTAAATGGTCGATGTATGTAGTATCA 57.092 33.333 0.00 0.00 0.00 2.15
3479 3559 1.817941 GGACAATGCGCACCCGTAT 60.818 57.895 14.90 0.00 41.62 3.06
3501 3581 0.666577 CGTCGGGTCACTGGAGTTTC 60.667 60.000 0.00 0.00 0.00 2.78
3506 3586 3.056107 TCGGGTCACTGGAGTTTCTAATG 60.056 47.826 0.00 0.00 0.00 1.90
3645 3976 1.810532 CCGTCCACTCAGCTAGGAC 59.189 63.158 13.79 13.79 46.48 3.85
3758 4100 7.485418 ACAATAACTTGATACAAACACACGA 57.515 32.000 0.00 0.00 36.20 4.35
3775 4117 1.797441 GACACCACAACACACGCAA 59.203 52.632 0.00 0.00 0.00 4.85
3788 4130 2.055042 ACGCAAACACCCAAGGCAA 61.055 52.632 0.00 0.00 0.00 4.52
3821 4169 2.464865 CCGATAGCAGCAACACTACTC 58.535 52.381 0.00 0.00 0.00 2.59
3822 4170 2.112522 CGATAGCAGCAACACTACTCG 58.887 52.381 0.00 0.00 0.00 4.18
3823 4171 2.478031 CGATAGCAGCAACACTACTCGT 60.478 50.000 0.00 0.00 0.00 4.18
3824 4172 2.631418 TAGCAGCAACACTACTCGTC 57.369 50.000 0.00 0.00 0.00 4.20
3825 4173 0.962489 AGCAGCAACACTACTCGTCT 59.038 50.000 0.00 0.00 0.00 4.18
3826 4174 2.160205 AGCAGCAACACTACTCGTCTA 58.840 47.619 0.00 0.00 0.00 2.59
3851 4199 0.679505 AGCACTACAAGAGCAACCGA 59.320 50.000 0.00 0.00 34.13 4.69
3941 4289 0.036765 GGATACAACACCGGAGCACA 60.037 55.000 9.46 0.00 0.00 4.57
3942 4290 1.076332 GATACAACACCGGAGCACAC 58.924 55.000 9.46 0.00 0.00 3.82
3943 4291 0.394938 ATACAACACCGGAGCACACA 59.605 50.000 9.46 0.00 0.00 3.72
3946 4294 1.078072 AACACCGGAGCACACACAA 60.078 52.632 9.46 0.00 0.00 3.33
3955 4305 1.599518 GCACACACAACCCGATCCA 60.600 57.895 0.00 0.00 0.00 3.41
4074 4425 4.993705 AGATAGAACAGGTTTTCACCCA 57.006 40.909 0.00 0.00 45.63 4.51
4075 4426 5.520748 AGATAGAACAGGTTTTCACCCAT 57.479 39.130 0.00 0.00 45.63 4.00
4077 4428 3.312736 AGAACAGGTTTTCACCCATGT 57.687 42.857 0.00 0.00 45.63 3.21
4109 4461 3.698820 ACCGAACGCTACACCCCC 61.699 66.667 0.00 0.00 0.00 5.40
4110 4462 3.697747 CCGAACGCTACACCCCCA 61.698 66.667 0.00 0.00 0.00 4.96
4154 4506 3.685435 CCACTGGGCATCACCAAC 58.315 61.111 0.00 0.00 40.68 3.77
4156 4508 1.228521 CACTGGGCATCACCAACCA 60.229 57.895 0.00 0.00 40.68 3.67
4157 4509 1.228552 ACTGGGCATCACCAACCAC 60.229 57.895 0.00 0.00 40.68 4.16
4158 4510 1.228521 CTGGGCATCACCAACCACA 60.229 57.895 0.00 0.00 40.68 4.17
4164 4517 0.250858 CATCACCAACCACAGGCTCA 60.251 55.000 0.00 0.00 0.00 4.26
4199 4552 2.850130 TAACACCACCAGGGCCGT 60.850 61.111 0.00 0.00 42.05 5.68
4200 4553 2.406002 CTAACACCACCAGGGCCGTT 62.406 60.000 0.00 0.00 42.05 4.44
4202 4555 4.579384 CACCACCAGGGCCGTTGT 62.579 66.667 0.00 0.00 42.05 3.32
4212 4565 2.722201 GGCCGTTGTCCCGAGATCT 61.722 63.158 0.00 0.00 0.00 2.75
4213 4566 1.519455 GCCGTTGTCCCGAGATCTG 60.519 63.158 0.00 0.00 0.00 2.90
4214 4567 1.519455 CCGTTGTCCCGAGATCTGC 60.519 63.158 0.00 0.00 0.00 4.26
4215 4568 1.513158 CGTTGTCCCGAGATCTGCT 59.487 57.895 0.00 0.00 0.00 4.24
4216 4569 0.803768 CGTTGTCCCGAGATCTGCTG 60.804 60.000 0.00 0.00 0.00 4.41
4217 4570 1.086634 GTTGTCCCGAGATCTGCTGC 61.087 60.000 0.00 0.00 0.00 5.25
4218 4571 1.260538 TTGTCCCGAGATCTGCTGCT 61.261 55.000 0.00 0.00 0.00 4.24
4219 4572 0.395724 TGTCCCGAGATCTGCTGCTA 60.396 55.000 0.00 0.00 0.00 3.49
4220 4573 0.031449 GTCCCGAGATCTGCTGCTAC 59.969 60.000 0.00 0.00 0.00 3.58
4221 4574 1.109920 TCCCGAGATCTGCTGCTACC 61.110 60.000 0.00 0.00 0.00 3.18
4222 4575 1.365633 CCGAGATCTGCTGCTACCC 59.634 63.158 0.00 0.00 0.00 3.69
4223 4576 1.365633 CGAGATCTGCTGCTACCCC 59.634 63.158 0.00 0.00 0.00 4.95
4224 4577 1.751563 GAGATCTGCTGCTACCCCC 59.248 63.158 0.00 0.00 0.00 5.40
4235 4588 0.919710 GCTACCCCCACCAAAGAGAT 59.080 55.000 0.00 0.00 0.00 2.75
4239 4592 0.995024 CCCCCACCAAAGAGATGAGT 59.005 55.000 0.00 0.00 0.00 3.41
4247 4600 3.395941 ACCAAAGAGATGAGTGGAAAGGT 59.604 43.478 0.00 0.00 35.04 3.50
4250 4603 3.197927 AGAGATGAGTGGAAAGGTCCT 57.802 47.619 0.00 0.00 45.22 3.85
4251 4604 3.525862 AGAGATGAGTGGAAAGGTCCTT 58.474 45.455 0.00 0.00 45.22 3.36
4292 4645 2.797278 CCCAGCGCCGAGACCTAAT 61.797 63.158 2.29 0.00 0.00 1.73
4294 4647 0.387929 CCAGCGCCGAGACCTAATAA 59.612 55.000 2.29 0.00 0.00 1.40
4295 4648 1.202486 CCAGCGCCGAGACCTAATAAA 60.202 52.381 2.29 0.00 0.00 1.40
4298 4651 1.202498 GCGCCGAGACCTAATAAACCT 60.202 52.381 0.00 0.00 0.00 3.50
4306 4659 5.391629 CGAGACCTAATAAACCTGCCAAAAC 60.392 44.000 0.00 0.00 0.00 2.43
4307 4660 4.770531 AGACCTAATAAACCTGCCAAAACC 59.229 41.667 0.00 0.00 0.00 3.27
4317 4670 4.111967 CCAAAACCGGCCTCCATT 57.888 55.556 0.00 0.00 0.00 3.16
4322 4676 2.075355 AAACCGGCCTCCATTGACCA 62.075 55.000 0.00 0.00 0.00 4.02
4329 4683 0.256752 CCTCCATTGACCATCCTGCA 59.743 55.000 0.00 0.00 0.00 4.41
4330 4684 1.341285 CCTCCATTGACCATCCTGCAA 60.341 52.381 0.00 0.00 0.00 4.08
4360 4714 2.336809 GACGAGCTCGGCCCTATG 59.663 66.667 36.93 10.16 42.67 2.23
4361 4715 3.214250 GACGAGCTCGGCCCTATGG 62.214 68.421 36.93 9.41 42.67 2.74
4382 4736 3.735237 CACCGTATGCTAGATGAGGTT 57.265 47.619 0.00 0.00 0.00 3.50
4383 4737 3.384668 CACCGTATGCTAGATGAGGTTG 58.615 50.000 0.00 0.00 0.00 3.77
4384 4738 2.365617 ACCGTATGCTAGATGAGGTTGG 59.634 50.000 0.00 0.00 0.00 3.77
4385 4739 2.365617 CCGTATGCTAGATGAGGTTGGT 59.634 50.000 0.00 0.00 0.00 3.67
4386 4740 3.553096 CCGTATGCTAGATGAGGTTGGTC 60.553 52.174 0.00 0.00 0.00 4.02
4387 4741 3.553096 CGTATGCTAGATGAGGTTGGTCC 60.553 52.174 0.00 0.00 0.00 4.46
4399 4753 4.248842 TGGTCCTGCCACACCGTG 62.249 66.667 0.00 0.00 43.61 4.94
4401 4755 4.927782 GTCCTGCCACACCGTGCA 62.928 66.667 0.00 0.00 31.34 4.57
4402 4756 4.927782 TCCTGCCACACCGTGCAC 62.928 66.667 6.82 6.82 31.34 4.57
4406 4760 4.961511 GCCACACCGTGCACGAGA 62.962 66.667 39.10 0.00 43.02 4.04
4407 4761 2.048222 CCACACCGTGCACGAGAT 60.048 61.111 39.10 21.49 43.02 2.75
4408 4762 2.382746 CCACACCGTGCACGAGATG 61.383 63.158 39.10 31.50 43.02 2.90
4409 4763 1.372872 CACACCGTGCACGAGATGA 60.373 57.895 39.10 0.00 43.02 2.92
4410 4764 1.080501 ACACCGTGCACGAGATGAG 60.081 57.895 39.10 23.33 43.02 2.90
4411 4765 2.125912 ACCGTGCACGAGATGAGC 60.126 61.111 39.10 0.00 43.02 4.26
4412 4766 2.182791 CCGTGCACGAGATGAGCT 59.817 61.111 39.10 0.00 43.02 4.09
4413 4767 1.875813 CCGTGCACGAGATGAGCTC 60.876 63.158 39.10 6.82 43.02 4.09
4421 4775 1.067250 GAGATGAGCTCGGTCCTGC 59.933 63.158 9.64 0.00 33.17 4.85
4422 4776 1.381056 AGATGAGCTCGGTCCTGCT 60.381 57.895 9.64 6.02 42.82 4.24
4423 4777 0.975040 AGATGAGCTCGGTCCTGCTT 60.975 55.000 9.64 0.00 39.91 3.91
4424 4778 0.747255 GATGAGCTCGGTCCTGCTTA 59.253 55.000 9.64 4.60 39.91 3.09
4425 4779 0.461961 ATGAGCTCGGTCCTGCTTAC 59.538 55.000 9.64 0.00 39.91 2.34
4426 4780 0.898326 TGAGCTCGGTCCTGCTTACA 60.898 55.000 9.64 0.82 39.91 2.41
4427 4781 0.458716 GAGCTCGGTCCTGCTTACAC 60.459 60.000 0.00 0.00 39.91 2.90
4428 4782 1.448013 GCTCGGTCCTGCTTACACC 60.448 63.158 0.00 0.00 0.00 4.16
4430 4784 2.654877 CGGTCCTGCTTACACCGT 59.345 61.111 1.50 0.00 46.58 4.83
4431 4785 1.736645 CGGTCCTGCTTACACCGTG 60.737 63.158 1.50 0.00 46.58 4.94
4432 4786 2.033194 GGTCCTGCTTACACCGTGC 61.033 63.158 0.00 0.00 0.00 5.34
4433 4787 1.301401 GTCCTGCTTACACCGTGCA 60.301 57.895 0.00 0.00 35.30 4.57
4434 4788 1.301401 TCCTGCTTACACCGTGCAC 60.301 57.895 6.82 6.82 32.91 4.57
4435 4789 2.667318 CCTGCTTACACCGTGCACG 61.667 63.158 31.77 31.77 39.44 5.34
4436 4790 1.663388 CTGCTTACACCGTGCACGA 60.663 57.895 39.10 17.87 43.02 4.35
4437 4791 1.617755 CTGCTTACACCGTGCACGAG 61.618 60.000 39.10 30.46 43.02 4.18
4438 4792 1.372499 GCTTACACCGTGCACGAGA 60.372 57.895 39.10 18.32 43.02 4.04
4439 4793 1.615107 GCTTACACCGTGCACGAGAC 61.615 60.000 39.10 19.03 43.02 3.36
4440 4794 1.334992 CTTACACCGTGCACGAGACG 61.335 60.000 39.10 24.43 43.02 4.18
4441 4795 1.784036 TTACACCGTGCACGAGACGA 61.784 55.000 39.10 19.11 43.02 4.20
4442 4796 1.579964 TACACCGTGCACGAGACGAT 61.580 55.000 39.10 19.68 43.02 3.73
4443 4797 2.126463 ACCGTGCACGAGACGATG 60.126 61.111 39.10 22.60 43.02 3.84
4444 4798 2.126463 CCGTGCACGAGACGATGT 60.126 61.111 39.10 0.00 43.02 3.06
4445 4799 2.152699 CCGTGCACGAGACGATGTC 61.153 63.158 39.10 0.00 43.02 3.06
4446 4800 2.488792 CGTGCACGAGACGATGTCG 61.489 63.158 34.93 1.26 43.02 4.35
4447 4801 2.152699 GTGCACGAGACGATGTCGG 61.153 63.158 0.00 0.00 44.95 4.79
4481 4835 2.652496 GCGAGACGAGCGATGGAC 60.652 66.667 0.00 0.00 0.00 4.02
4482 4836 2.024871 CGAGACGAGCGATGGACC 59.975 66.667 0.00 0.00 0.00 4.46
4483 4837 2.024871 GAGACGAGCGATGGACCG 59.975 66.667 0.00 0.00 0.00 4.79
4491 4845 2.028190 CGATGGACCGCAGCTAGG 59.972 66.667 5.91 5.91 0.00 3.02
4492 4846 2.490148 CGATGGACCGCAGCTAGGA 61.490 63.158 13.69 0.00 0.00 2.94
4493 4847 1.365633 GATGGACCGCAGCTAGGAG 59.634 63.158 13.69 0.00 0.00 3.69
4494 4848 1.075970 ATGGACCGCAGCTAGGAGA 60.076 57.895 13.69 0.00 0.00 3.71
4495 4849 0.687757 ATGGACCGCAGCTAGGAGAA 60.688 55.000 13.69 0.07 0.00 2.87
4496 4850 1.323271 TGGACCGCAGCTAGGAGAAG 61.323 60.000 13.69 0.00 0.00 2.85
4497 4851 1.439644 GACCGCAGCTAGGAGAAGG 59.560 63.158 13.69 0.00 0.00 3.46
4498 4852 1.000486 ACCGCAGCTAGGAGAAGGA 60.000 57.895 13.69 0.00 0.00 3.36
4499 4853 1.324005 ACCGCAGCTAGGAGAAGGAC 61.324 60.000 13.69 0.00 0.00 3.85
4500 4854 1.323271 CCGCAGCTAGGAGAAGGACA 61.323 60.000 1.34 0.00 0.00 4.02
4501 4855 0.102120 CGCAGCTAGGAGAAGGACAG 59.898 60.000 0.00 0.00 0.00 3.51
4502 4856 0.179086 GCAGCTAGGAGAAGGACAGC 60.179 60.000 0.00 0.00 0.00 4.40
4503 4857 0.463620 CAGCTAGGAGAAGGACAGCC 59.536 60.000 0.00 0.00 32.58 4.85
4504 4858 0.689412 AGCTAGGAGAAGGACAGCCC 60.689 60.000 0.00 0.00 32.58 5.19
4512 4866 2.754658 AGGACAGCCCTACGACGG 60.755 66.667 0.00 0.00 45.48 4.79
4513 4867 2.753043 GGACAGCCCTACGACGGA 60.753 66.667 0.00 0.00 0.00 4.69
4514 4868 2.345760 GGACAGCCCTACGACGGAA 61.346 63.158 0.00 0.00 0.00 4.30
4515 4869 1.139095 GACAGCCCTACGACGGAAG 59.861 63.158 0.00 0.00 0.00 3.46
4526 4880 4.196372 ACGGAAGTAACACCCGGA 57.804 55.556 0.73 0.00 46.88 5.14
4527 4881 1.667722 ACGGAAGTAACACCCGGAC 59.332 57.895 0.73 0.00 46.88 4.79
4528 4882 1.444895 CGGAAGTAACACCCGGACG 60.445 63.158 0.73 0.00 39.59 4.79
4529 4883 1.865788 CGGAAGTAACACCCGGACGA 61.866 60.000 0.73 0.00 39.59 4.20
4530 4884 0.389037 GGAAGTAACACCCGGACGAC 60.389 60.000 0.73 0.00 0.00 4.34
4531 4885 0.730494 GAAGTAACACCCGGACGACG 60.730 60.000 0.73 0.00 43.80 5.12
4541 4895 3.816388 GGACGACGAGGAGAGGAG 58.184 66.667 0.00 0.00 0.00 3.69
4542 4896 1.078285 GGACGACGAGGAGAGGAGT 60.078 63.158 0.00 0.00 0.00 3.85
4543 4897 1.091197 GGACGACGAGGAGAGGAGTC 61.091 65.000 0.00 0.00 0.00 3.36
4545 4899 4.937193 GACGAGGAGAGGAGTCGA 57.063 61.111 0.00 0.00 37.16 4.20
4546 4900 3.156157 GACGAGGAGAGGAGTCGAA 57.844 57.895 0.00 0.00 37.16 3.71
4547 4901 1.011333 GACGAGGAGAGGAGTCGAAG 58.989 60.000 0.00 0.00 37.16 3.79
4548 4902 0.393267 ACGAGGAGAGGAGTCGAAGG 60.393 60.000 0.00 0.00 37.16 3.46
4549 4903 1.720694 CGAGGAGAGGAGTCGAAGGC 61.721 65.000 0.00 0.00 35.70 4.35
4550 4904 1.380650 AGGAGAGGAGTCGAAGGCC 60.381 63.158 0.00 0.00 0.00 5.19
4551 4905 2.776913 GGAGAGGAGTCGAAGGCCG 61.777 68.421 0.00 0.00 40.25 6.13
4552 4906 1.749638 GAGAGGAGTCGAAGGCCGA 60.750 63.158 0.00 0.00 46.35 5.54
4559 4913 3.134879 TCGAAGGCCGACACAAGT 58.865 55.556 0.00 0.00 43.23 3.16
4560 4914 1.006571 TCGAAGGCCGACACAAGTC 60.007 57.895 0.00 0.00 43.23 3.01
4561 4915 1.006102 CGAAGGCCGACACAAGTCT 60.006 57.895 0.00 0.00 42.73 3.24
4562 4916 0.242825 CGAAGGCCGACACAAGTCTA 59.757 55.000 0.00 0.00 42.73 2.59
4563 4917 1.711206 GAAGGCCGACACAAGTCTAC 58.289 55.000 0.00 0.00 42.73 2.59
4564 4918 1.272769 GAAGGCCGACACAAGTCTACT 59.727 52.381 0.00 0.00 42.73 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.854399 TGTCGAATGATTTCCAACAACAC 58.146 39.130 0.00 0.00 0.00 3.32
1 2 5.240403 TCATGTCGAATGATTTCCAACAACA 59.760 36.000 6.28 0.00 31.55 3.33
2 3 5.698832 TCATGTCGAATGATTTCCAACAAC 58.301 37.500 6.28 0.00 31.55 3.32
3 4 5.619757 GCTCATGTCGAATGATTTCCAACAA 60.620 40.000 9.65 0.00 31.55 2.83
4 5 4.142622 GCTCATGTCGAATGATTTCCAACA 60.143 41.667 9.65 0.00 32.03 3.33
5 6 4.346129 GCTCATGTCGAATGATTTCCAAC 58.654 43.478 9.65 0.00 0.00 3.77
6 7 3.063861 CGCTCATGTCGAATGATTTCCAA 59.936 43.478 9.65 0.00 0.00 3.53
7 8 2.609002 CGCTCATGTCGAATGATTTCCA 59.391 45.455 9.65 0.00 0.00 3.53
8 9 2.032549 CCGCTCATGTCGAATGATTTCC 60.033 50.000 10.73 1.82 0.00 3.13
9 10 2.609459 ACCGCTCATGTCGAATGATTTC 59.391 45.455 10.73 4.06 0.00 2.17
10 11 2.632377 ACCGCTCATGTCGAATGATTT 58.368 42.857 10.73 0.00 0.00 2.17
11 12 2.315925 ACCGCTCATGTCGAATGATT 57.684 45.000 10.73 0.00 0.00 2.57
12 13 2.315925 AACCGCTCATGTCGAATGAT 57.684 45.000 10.73 0.00 0.00 2.45
13 14 2.927477 GTTAACCGCTCATGTCGAATGA 59.073 45.455 10.73 9.09 0.00 2.57
14 15 2.930040 AGTTAACCGCTCATGTCGAATG 59.070 45.455 0.88 0.00 0.00 2.67
15 16 3.247006 AGTTAACCGCTCATGTCGAAT 57.753 42.857 0.88 3.44 0.00 3.34
16 17 2.736144 AGTTAACCGCTCATGTCGAA 57.264 45.000 0.88 0.00 0.00 3.71
17 18 3.630769 AGATAGTTAACCGCTCATGTCGA 59.369 43.478 0.88 0.00 0.00 4.20
74 76 5.123502 CCTATTGGATTGTGCATCTATGCTC 59.876 44.000 15.47 12.37 44.57 4.26
75 77 5.008331 CCTATTGGATTGTGCATCTATGCT 58.992 41.667 15.47 0.00 44.57 3.79
126 131 4.789807 ACTCCATTCCTCAATCCTCAATG 58.210 43.478 0.00 0.00 0.00 2.82
161 166 2.962421 CACCCCAAAGAGGTAAAAAGCA 59.038 45.455 0.00 0.00 35.24 3.91
162 167 3.005472 GTCACCCCAAAGAGGTAAAAAGC 59.995 47.826 0.00 0.00 35.24 3.51
163 168 4.211920 TGTCACCCCAAAGAGGTAAAAAG 58.788 43.478 0.00 0.00 35.24 2.27
164 169 4.252570 TGTCACCCCAAAGAGGTAAAAA 57.747 40.909 0.00 0.00 35.24 1.94
165 170 3.955524 TGTCACCCCAAAGAGGTAAAA 57.044 42.857 0.00 0.00 35.24 1.52
166 171 5.251932 TGATATGTCACCCCAAAGAGGTAAA 59.748 40.000 0.00 0.00 35.24 2.01
167 172 4.785914 TGATATGTCACCCCAAAGAGGTAA 59.214 41.667 0.00 0.00 35.24 2.85
191 196 3.828451 CCGGACGGAGGGAGTATTATAAA 59.172 47.826 4.40 0.00 37.50 1.40
198 203 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
199 204 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
200 205 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
201 206 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
202 207 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
203 208 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
204 209 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
205 210 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
206 211 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
207 212 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
208 213 2.537401 CTCCGACAAGTATTTCCGGAC 58.463 52.381 1.83 0.00 43.47 4.79
209 214 1.479323 CCTCCGACAAGTATTTCCGGA 59.521 52.381 0.00 0.00 45.74 5.14
210 215 1.479323 TCCTCCGACAAGTATTTCCGG 59.521 52.381 0.00 0.00 41.36 5.14
211 216 2.953466 TCCTCCGACAAGTATTTCCG 57.047 50.000 0.00 0.00 0.00 4.30
212 217 3.877508 CCATTCCTCCGACAAGTATTTCC 59.122 47.826 0.00 0.00 0.00 3.13
213 218 4.766375 TCCATTCCTCCGACAAGTATTTC 58.234 43.478 0.00 0.00 0.00 2.17
214 219 4.837093 TCCATTCCTCCGACAAGTATTT 57.163 40.909 0.00 0.00 0.00 1.40
215 220 4.164221 ACATCCATTCCTCCGACAAGTATT 59.836 41.667 0.00 0.00 0.00 1.89
216 221 3.711704 ACATCCATTCCTCCGACAAGTAT 59.288 43.478 0.00 0.00 0.00 2.12
217 222 3.104512 ACATCCATTCCTCCGACAAGTA 58.895 45.455 0.00 0.00 0.00 2.24
218 223 1.909302 ACATCCATTCCTCCGACAAGT 59.091 47.619 0.00 0.00 0.00 3.16
219 224 2.698855 ACATCCATTCCTCCGACAAG 57.301 50.000 0.00 0.00 0.00 3.16
220 225 3.967326 AGATACATCCATTCCTCCGACAA 59.033 43.478 0.00 0.00 0.00 3.18
221 226 3.576861 AGATACATCCATTCCTCCGACA 58.423 45.455 0.00 0.00 0.00 4.35
222 227 5.010933 TCTAGATACATCCATTCCTCCGAC 58.989 45.833 0.00 0.00 0.00 4.79
223 228 5.010933 GTCTAGATACATCCATTCCTCCGA 58.989 45.833 0.00 0.00 0.00 4.55
224 229 4.142578 CGTCTAGATACATCCATTCCTCCG 60.143 50.000 0.00 0.00 0.00 4.63
225 230 4.767928 ACGTCTAGATACATCCATTCCTCC 59.232 45.833 0.00 0.00 0.00 4.30
226 231 5.968528 ACGTCTAGATACATCCATTCCTC 57.031 43.478 0.00 0.00 0.00 3.71
227 232 8.423906 AAATACGTCTAGATACATCCATTCCT 57.576 34.615 0.00 0.00 0.00 3.36
254 259 9.851686 TGCATAAAAATGGATGTATCTAGAACT 57.148 29.630 0.00 0.00 0.00 3.01
262 267 9.044150 CGGAAAAATGCATAAAAATGGATGTAT 57.956 29.630 0.00 0.00 32.82 2.29
263 268 8.253810 TCGGAAAAATGCATAAAAATGGATGTA 58.746 29.630 0.00 0.00 32.82 2.29
264 269 7.064490 GTCGGAAAAATGCATAAAAATGGATGT 59.936 33.333 0.00 0.00 32.82 3.06
265 270 7.064371 TGTCGGAAAAATGCATAAAAATGGATG 59.936 33.333 0.00 0.00 32.82 3.51
266 271 7.102346 TGTCGGAAAAATGCATAAAAATGGAT 58.898 30.769 0.00 0.00 33.93 3.41
267 272 6.459066 TGTCGGAAAAATGCATAAAAATGGA 58.541 32.000 0.00 0.00 0.00 3.41
268 273 6.718454 TGTCGGAAAAATGCATAAAAATGG 57.282 33.333 0.00 0.00 0.00 3.16
269 274 7.795859 ACTTGTCGGAAAAATGCATAAAAATG 58.204 30.769 0.00 0.00 0.00 2.32
270 275 7.961325 ACTTGTCGGAAAAATGCATAAAAAT 57.039 28.000 0.00 0.00 0.00 1.82
271 276 9.482627 AATACTTGTCGGAAAAATGCATAAAAA 57.517 25.926 0.00 0.00 0.00 1.94
272 277 9.482627 AAATACTTGTCGGAAAAATGCATAAAA 57.517 25.926 0.00 0.00 0.00 1.52
273 278 9.134734 GAAATACTTGTCGGAAAAATGCATAAA 57.865 29.630 0.00 0.00 0.00 1.40
274 279 7.757624 GGAAATACTTGTCGGAAAAATGCATAA 59.242 33.333 0.00 0.00 0.00 1.90
275 280 7.254852 GGAAATACTTGTCGGAAAAATGCATA 58.745 34.615 0.00 0.00 0.00 3.14
276 281 6.099341 GGAAATACTTGTCGGAAAAATGCAT 58.901 36.000 0.00 0.00 0.00 3.96
277 282 5.465935 GGAAATACTTGTCGGAAAAATGCA 58.534 37.500 0.00 0.00 0.00 3.96
278 283 4.557301 CGGAAATACTTGTCGGAAAAATGC 59.443 41.667 0.00 0.00 0.00 3.56
279 284 5.092781 CCGGAAATACTTGTCGGAAAAATG 58.907 41.667 0.00 0.00 42.94 2.32
280 285 5.005094 TCCGGAAATACTTGTCGGAAAAAT 58.995 37.500 0.00 0.00 45.40 1.82
281 286 4.387598 TCCGGAAATACTTGTCGGAAAAA 58.612 39.130 0.00 0.00 45.40 1.94
282 287 4.005487 TCCGGAAATACTTGTCGGAAAA 57.995 40.909 0.00 0.00 45.40 2.29
283 288 3.681593 TCCGGAAATACTTGTCGGAAA 57.318 42.857 0.00 0.00 45.40 3.13
285 290 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
286 291 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
287 292 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
288 293 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
289 294 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
290 295 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
291 296 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
292 297 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
293 298 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
294 299 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
295 300 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
296 301 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
297 302 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
298 303 1.856539 AACTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
299 304 1.379576 AACTACTCCCTCCGTCCGG 60.380 63.158 0.00 0.00 0.00 5.14
300 305 1.807886 CAACTACTCCCTCCGTCCG 59.192 63.158 0.00 0.00 0.00 4.79
301 306 0.971447 AGCAACTACTCCCTCCGTCC 60.971 60.000 0.00 0.00 0.00 4.79
302 307 0.173708 CAGCAACTACTCCCTCCGTC 59.826 60.000 0.00 0.00 0.00 4.79
303 308 0.251653 TCAGCAACTACTCCCTCCGT 60.252 55.000 0.00 0.00 0.00 4.69
304 309 0.895530 TTCAGCAACTACTCCCTCCG 59.104 55.000 0.00 0.00 0.00 4.63
305 310 1.406205 GCTTCAGCAACTACTCCCTCC 60.406 57.143 0.00 0.00 41.59 4.30
306 311 1.737363 CGCTTCAGCAACTACTCCCTC 60.737 57.143 0.00 0.00 42.21 4.30
307 312 0.247736 CGCTTCAGCAACTACTCCCT 59.752 55.000 0.00 0.00 42.21 4.20
308 313 0.741221 CCGCTTCAGCAACTACTCCC 60.741 60.000 0.00 0.00 42.21 4.30
309 314 1.362406 GCCGCTTCAGCAACTACTCC 61.362 60.000 0.00 0.00 42.21 3.85
310 315 0.390472 AGCCGCTTCAGCAACTACTC 60.390 55.000 0.00 0.00 42.21 2.59
311 316 0.035458 AAGCCGCTTCAGCAACTACT 59.965 50.000 0.00 0.00 42.21 2.57
312 317 0.166814 CAAGCCGCTTCAGCAACTAC 59.833 55.000 1.56 0.00 42.21 2.73
353 358 9.829507 ACTCATATTTCTTTACTCCAGAATCTG 57.170 33.333 2.68 2.68 30.26 2.90
454 473 5.256474 AGCAATGTATAATCATGGTAGGCC 58.744 41.667 0.00 0.00 0.00 5.19
540 561 1.464997 GTCAACTTCGTCCTCATTGGC 59.535 52.381 0.00 0.00 35.26 4.52
542 563 4.811555 TTTGTCAACTTCGTCCTCATTG 57.188 40.909 0.00 0.00 0.00 2.82
543 564 7.228706 AGTTATTTTGTCAACTTCGTCCTCATT 59.771 33.333 0.00 0.00 30.89 2.57
653 674 7.071950 ACATTTATAAGAGCCCACTGGTGTATA 59.928 37.037 0.00 0.00 0.00 1.47
717 739 1.740585 TGTTTTGTTGTGTGGTCGAGG 59.259 47.619 0.00 0.00 0.00 4.63
719 741 1.128878 CGTGTTTTGTTGTGTGGTCGA 59.871 47.619 0.00 0.00 0.00 4.20
721 743 1.469308 TCCGTGTTTTGTTGTGTGGTC 59.531 47.619 0.00 0.00 0.00 4.02
833 855 2.953648 GGATGGATGCATCAATCACACA 59.046 45.455 34.62 20.23 38.70 3.72
916 947 1.500303 TGATGGATGGGGAATTGGGAG 59.500 52.381 0.00 0.00 0.00 4.30
1229 1263 7.621428 ACCTGATGATGACAACTGATAAAAG 57.379 36.000 0.00 0.00 0.00 2.27
1306 1380 2.171027 ACGTTTCTCCAACCACACCTAA 59.829 45.455 0.00 0.00 30.65 2.69
2094 2168 4.518249 GGAGGGACAATTAAGGAAGACAG 58.482 47.826 0.00 0.00 0.00 3.51
2095 2169 3.265995 GGGAGGGACAATTAAGGAAGACA 59.734 47.826 0.00 0.00 0.00 3.41
2207 2287 3.807538 GTCGACGACGGCCTAGCA 61.808 66.667 12.94 0.00 38.25 3.49
2405 2485 0.935898 CCATGAAGAGCATCGTGAGC 59.064 55.000 0.00 0.00 42.67 4.26
3026 3106 1.372872 CAGCACCACGATCACGACA 60.373 57.895 0.00 0.00 42.66 4.35
3159 3239 1.461268 TGTCCCAGCTCTCCACCAA 60.461 57.895 0.00 0.00 0.00 3.67
3287 3367 1.372087 GCAGCTGCTGGTATCGCTTT 61.372 55.000 31.33 0.00 38.21 3.51
3293 3373 2.513204 CGCTGCAGCTGCTGGTAT 60.513 61.111 36.74 0.00 42.66 2.73
3311 3391 1.918262 TGCATCTCCACCTCATCCTTT 59.082 47.619 0.00 0.00 0.00 3.11
3356 3436 1.522668 CCAAAAGATGGTCGCTGTCA 58.477 50.000 0.00 0.00 44.85 3.58
3368 3448 6.292923 TCGACCATTTAAGTTCTCCAAAAGA 58.707 36.000 0.00 0.00 0.00 2.52
3401 3481 3.994392 CGTGCCCCTGTACATAATGATAC 59.006 47.826 0.00 0.00 0.00 2.24
3402 3482 3.644265 ACGTGCCCCTGTACATAATGATA 59.356 43.478 0.00 0.00 0.00 2.15
3405 3485 2.325583 ACGTGCCCCTGTACATAATG 57.674 50.000 0.00 0.00 0.00 1.90
3406 3486 2.237643 TGAACGTGCCCCTGTACATAAT 59.762 45.455 0.00 0.00 0.00 1.28
3407 3487 1.624312 TGAACGTGCCCCTGTACATAA 59.376 47.619 0.00 0.00 0.00 1.90
3479 3559 2.203379 TCCAGTGACCCGACGTGA 60.203 61.111 0.00 0.00 0.00 4.35
3501 3581 4.523813 ACACACGCGAAGAAAAACATTAG 58.476 39.130 15.93 0.00 0.00 1.73
3506 3586 4.580528 TCTTTACACACGCGAAGAAAAAC 58.419 39.130 15.93 0.00 0.00 2.43
3607 3938 0.099968 CTGATGCATGCACCTTTCGG 59.900 55.000 25.37 17.63 0.00 4.30
3645 3976 2.119801 ACATTAGCTGGTCTGCAAGG 57.880 50.000 0.00 0.00 34.99 3.61
3711 4042 1.787012 TCGTTGCTTAGGACGAAACC 58.213 50.000 0.00 0.00 44.34 3.27
3717 4048 4.946784 ATTGTTGATCGTTGCTTAGGAC 57.053 40.909 0.00 0.00 0.00 3.85
3718 4049 6.170506 AGTTATTGTTGATCGTTGCTTAGGA 58.829 36.000 0.00 0.00 0.00 2.94
3721 4052 7.428282 TCAAGTTATTGTTGATCGTTGCTTA 57.572 32.000 0.00 0.00 37.68 3.09
3758 4100 0.109504 GTTTGCGTGTGTTGTGGTGT 60.110 50.000 0.00 0.00 0.00 4.16
3775 4117 2.969821 TGTATCTTGCCTTGGGTGTT 57.030 45.000 0.00 0.00 0.00 3.32
3788 4130 1.405821 GCTATCGGCGCCTATGTATCT 59.594 52.381 26.68 0.00 0.00 1.98
3821 4169 2.048444 TGTAGTGCTAGGGGTAGACG 57.952 55.000 0.00 0.00 0.00 4.18
3822 4170 3.629087 TCTTGTAGTGCTAGGGGTAGAC 58.371 50.000 0.00 0.00 0.00 2.59
3823 4171 3.899726 CTCTTGTAGTGCTAGGGGTAGA 58.100 50.000 0.00 0.00 0.00 2.59
3824 4172 2.362717 GCTCTTGTAGTGCTAGGGGTAG 59.637 54.545 0.00 0.00 32.42 3.18
3825 4173 2.291996 TGCTCTTGTAGTGCTAGGGGTA 60.292 50.000 0.00 0.00 35.86 3.69
3826 4174 1.196012 GCTCTTGTAGTGCTAGGGGT 58.804 55.000 0.00 0.00 32.42 4.95
3918 4266 1.207329 GCTCCGGTGTTGTATCCTTCT 59.793 52.381 0.00 0.00 0.00 2.85
3941 4289 0.991920 ATCCTTGGATCGGGTTGTGT 59.008 50.000 0.00 0.00 0.00 3.72
3942 4290 1.065491 TGATCCTTGGATCGGGTTGTG 60.065 52.381 20.69 0.00 34.46 3.33
3943 4291 1.210478 CTGATCCTTGGATCGGGTTGT 59.790 52.381 23.98 0.00 35.02 3.32
3946 4294 1.343478 ACTCTGATCCTTGGATCGGGT 60.343 52.381 28.36 23.03 38.24 5.28
4047 4397 6.370166 GGTGAAAACCTGTTCTATCTTCAGAG 59.630 42.308 0.00 0.00 0.00 3.35
4074 4425 0.944311 GTGGCGTCGAGTGTTGACAT 60.944 55.000 0.00 0.00 36.11 3.06
4075 4426 1.590525 GTGGCGTCGAGTGTTGACA 60.591 57.895 0.00 0.00 36.11 3.58
4077 4428 2.028484 GGTGGCGTCGAGTGTTGA 59.972 61.111 0.00 0.00 0.00 3.18
4109 4461 2.125512 GTGGGAGGCGTGCTAGTG 60.126 66.667 0.00 0.00 0.00 2.74
4110 4462 1.990060 ATGTGGGAGGCGTGCTAGT 60.990 57.895 0.00 0.00 0.00 2.57
4141 4493 1.228521 CTGTGGTTGGTGATGCCCA 60.229 57.895 0.00 0.00 36.04 5.36
4184 4537 4.579384 CAACGGCCCTGGTGGTGT 62.579 66.667 0.00 0.00 36.04 4.16
4199 4552 1.219124 GCAGCAGATCTCGGGACAA 59.781 57.895 0.00 0.00 0.00 3.18
4200 4553 0.395724 TAGCAGCAGATCTCGGGACA 60.396 55.000 0.00 0.00 0.00 4.02
4202 4555 1.109920 GGTAGCAGCAGATCTCGGGA 61.110 60.000 0.00 0.00 0.00 5.14
4208 4561 1.147153 GTGGGGGTAGCAGCAGATC 59.853 63.158 0.00 0.00 0.00 2.75
4212 4565 2.424842 CTTTGGTGGGGGTAGCAGCA 62.425 60.000 0.00 0.00 0.00 4.41
4213 4566 1.678970 CTTTGGTGGGGGTAGCAGC 60.679 63.158 0.00 0.00 0.00 5.25
4214 4567 0.035056 CTCTTTGGTGGGGGTAGCAG 60.035 60.000 0.00 0.00 0.00 4.24
4215 4568 0.474854 TCTCTTTGGTGGGGGTAGCA 60.475 55.000 0.00 0.00 0.00 3.49
4216 4569 0.919710 ATCTCTTTGGTGGGGGTAGC 59.080 55.000 0.00 0.00 0.00 3.58
4217 4570 2.171448 CTCATCTCTTTGGTGGGGGTAG 59.829 54.545 0.00 0.00 0.00 3.18
4218 4571 2.196595 CTCATCTCTTTGGTGGGGGTA 58.803 52.381 0.00 0.00 0.00 3.69
4219 4572 0.995024 CTCATCTCTTTGGTGGGGGT 59.005 55.000 0.00 0.00 0.00 4.95
4220 4573 0.995024 ACTCATCTCTTTGGTGGGGG 59.005 55.000 0.00 0.00 0.00 5.40
4221 4574 1.340405 CCACTCATCTCTTTGGTGGGG 60.340 57.143 0.00 0.00 42.39 4.96
4222 4575 1.630369 TCCACTCATCTCTTTGGTGGG 59.370 52.381 9.99 0.00 45.11 4.61
4223 4576 3.423539 TTCCACTCATCTCTTTGGTGG 57.576 47.619 0.00 0.00 46.03 4.61
4224 4577 3.755378 CCTTTCCACTCATCTCTTTGGTG 59.245 47.826 0.00 0.00 0.00 4.17
4274 4627 1.461091 TATTAGGTCTCGGCGCTGGG 61.461 60.000 17.88 14.57 0.00 4.45
4278 4631 1.202498 AGGTTTATTAGGTCTCGGCGC 60.202 52.381 0.00 0.00 0.00 6.53
4284 4637 4.770531 GGTTTTGGCAGGTTTATTAGGTCT 59.229 41.667 0.00 0.00 0.00 3.85
4285 4638 4.380128 CGGTTTTGGCAGGTTTATTAGGTC 60.380 45.833 0.00 0.00 0.00 3.85
4306 4659 1.526917 GATGGTCAATGGAGGCCGG 60.527 63.158 0.00 0.00 0.00 6.13
4307 4660 1.526917 GGATGGTCAATGGAGGCCG 60.527 63.158 0.00 0.00 0.00 6.13
4312 4665 1.075212 TGTTGCAGGATGGTCAATGGA 59.925 47.619 0.00 0.00 35.86 3.41
4317 4670 1.302431 CGGTGTTGCAGGATGGTCA 60.302 57.895 0.00 0.00 35.86 4.02
4341 4695 1.899534 ATAGGGCCGAGCTCGTCTC 60.900 63.158 32.41 22.74 38.47 3.36
4362 4716 3.384668 CAACCTCATCTAGCATACGGTG 58.615 50.000 0.00 0.00 0.00 4.94
4363 4717 2.365617 CCAACCTCATCTAGCATACGGT 59.634 50.000 0.00 0.00 0.00 4.83
4364 4718 2.365617 ACCAACCTCATCTAGCATACGG 59.634 50.000 0.00 0.00 0.00 4.02
4365 4719 3.553096 GGACCAACCTCATCTAGCATACG 60.553 52.174 0.00 0.00 35.41 3.06
4366 4720 3.996480 GGACCAACCTCATCTAGCATAC 58.004 50.000 0.00 0.00 35.41 2.39
4384 4738 4.927782 TGCACGGTGTGGCAGGAC 62.928 66.667 10.24 0.00 34.58 3.85
4385 4739 4.927782 GTGCACGGTGTGGCAGGA 62.928 66.667 10.24 0.00 41.35 3.86
4389 4743 4.961511 TCTCGTGCACGGTGTGGC 62.962 66.667 36.41 0.00 40.29 5.01
4390 4744 2.048222 ATCTCGTGCACGGTGTGG 60.048 61.111 36.41 21.05 40.29 4.17
4391 4745 1.347097 CTCATCTCGTGCACGGTGTG 61.347 60.000 36.41 28.74 40.29 3.82
4392 4746 1.080501 CTCATCTCGTGCACGGTGT 60.081 57.895 36.41 20.35 40.29 4.16
4393 4747 2.447887 GCTCATCTCGTGCACGGTG 61.448 63.158 36.41 29.37 40.29 4.94
4394 4748 2.125912 GCTCATCTCGTGCACGGT 60.126 61.111 36.41 21.05 40.29 4.83
4395 4749 1.875813 GAGCTCATCTCGTGCACGG 60.876 63.158 36.41 26.52 40.29 4.94
4396 4750 3.685592 GAGCTCATCTCGTGCACG 58.314 61.111 32.76 32.76 36.55 5.34
4403 4757 1.067250 GCAGGACCGAGCTCATCTC 59.933 63.158 15.40 4.16 38.47 2.75
4404 4758 0.975040 AAGCAGGACCGAGCTCATCT 60.975 55.000 15.40 1.94 40.90 2.90
4405 4759 0.747255 TAAGCAGGACCGAGCTCATC 59.253 55.000 15.40 10.42 40.90 2.92
4406 4760 0.461961 GTAAGCAGGACCGAGCTCAT 59.538 55.000 15.40 0.00 40.90 2.90
4407 4761 0.898326 TGTAAGCAGGACCGAGCTCA 60.898 55.000 15.40 7.01 40.90 4.26
4408 4762 0.458716 GTGTAAGCAGGACCGAGCTC 60.459 60.000 13.81 2.73 40.90 4.09
4409 4763 1.592223 GTGTAAGCAGGACCGAGCT 59.408 57.895 8.48 8.48 44.31 4.09
4410 4764 1.448013 GGTGTAAGCAGGACCGAGC 60.448 63.158 4.01 4.01 0.00 5.03
4411 4765 4.913126 GGTGTAAGCAGGACCGAG 57.087 61.111 0.00 0.00 0.00 4.63
4414 4768 2.033194 GCACGGTGTAAGCAGGACC 61.033 63.158 10.24 0.00 0.00 4.46
4415 4769 1.301401 TGCACGGTGTAAGCAGGAC 60.301 57.895 10.24 0.00 33.75 3.85
4416 4770 1.301401 GTGCACGGTGTAAGCAGGA 60.301 57.895 10.24 0.00 39.21 3.86
4417 4771 2.667318 CGTGCACGGTGTAAGCAGG 61.667 63.158 31.15 3.40 39.21 4.85
4418 4772 1.617755 CTCGTGCACGGTGTAAGCAG 61.618 60.000 36.41 20.88 39.21 4.24
4419 4773 1.663388 CTCGTGCACGGTGTAAGCA 60.663 57.895 36.41 15.58 40.29 3.91
4420 4774 1.372499 TCTCGTGCACGGTGTAAGC 60.372 57.895 36.41 0.00 40.29 3.09
4421 4775 1.334992 CGTCTCGTGCACGGTGTAAG 61.335 60.000 36.41 25.84 40.29 2.34
4422 4776 1.370778 CGTCTCGTGCACGGTGTAA 60.371 57.895 36.41 17.83 40.29 2.41
4423 4777 1.579964 ATCGTCTCGTGCACGGTGTA 61.580 55.000 36.41 18.22 40.29 2.90
4424 4778 2.916052 ATCGTCTCGTGCACGGTGT 61.916 57.895 36.41 15.54 40.29 4.16
4425 4779 2.126463 ATCGTCTCGTGCACGGTG 60.126 61.111 36.41 27.94 40.29 4.94
4426 4780 2.126463 CATCGTCTCGTGCACGGT 60.126 61.111 36.41 14.52 40.29 4.83
4427 4781 2.126463 ACATCGTCTCGTGCACGG 60.126 61.111 36.41 26.52 40.29 4.94
4428 4782 2.488792 CGACATCGTCTCGTGCACG 61.489 63.158 32.76 32.76 38.67 5.34
4429 4783 2.152699 CCGACATCGTCTCGTGCAC 61.153 63.158 6.82 6.82 37.74 4.57
4430 4784 2.178273 CCGACATCGTCTCGTGCA 59.822 61.111 0.00 0.00 37.74 4.57
4431 4785 3.248171 GCCGACATCGTCTCGTGC 61.248 66.667 0.00 0.00 37.74 5.34
4432 4786 1.583967 GAGCCGACATCGTCTCGTG 60.584 63.158 0.00 0.00 34.66 4.35
4433 4787 2.792599 GAGCCGACATCGTCTCGT 59.207 61.111 0.00 0.00 34.66 4.18
4435 4789 0.308376 GGTAGAGCCGACATCGTCTC 59.692 60.000 4.22 4.22 43.76 3.36
4436 4790 2.406205 GGTAGAGCCGACATCGTCT 58.594 57.895 0.00 0.45 37.74 4.18
4446 4800 2.202810 GCTCAGTGCGGTAGAGCC 60.203 66.667 8.52 0.00 46.82 4.70
4455 4809 4.760840 TCGTCTCGCGCTCAGTGC 62.761 66.667 5.56 0.00 41.07 4.40
4456 4810 2.575525 CTCGTCTCGCGCTCAGTG 60.576 66.667 5.56 0.00 41.07 3.66
4457 4811 4.468615 GCTCGTCTCGCGCTCAGT 62.469 66.667 5.56 0.00 41.07 3.41
4464 4818 2.652496 GTCCATCGCTCGTCTCGC 60.652 66.667 0.00 0.00 0.00 5.03
4465 4819 2.024871 GGTCCATCGCTCGTCTCG 59.975 66.667 0.00 0.00 0.00 4.04
4466 4820 2.024871 CGGTCCATCGCTCGTCTC 59.975 66.667 0.00 0.00 0.00 3.36
4474 4828 2.028190 CCTAGCTGCGGTCCATCG 59.972 66.667 0.00 0.00 0.00 3.84
4475 4829 1.109920 TCTCCTAGCTGCGGTCCATC 61.110 60.000 0.00 0.00 0.00 3.51
4476 4830 0.687757 TTCTCCTAGCTGCGGTCCAT 60.688 55.000 0.00 0.00 0.00 3.41
4477 4831 1.304962 TTCTCCTAGCTGCGGTCCA 60.305 57.895 0.00 0.00 0.00 4.02
4478 4832 1.439644 CTTCTCCTAGCTGCGGTCC 59.560 63.158 0.00 0.00 0.00 4.46
4479 4833 1.038130 TCCTTCTCCTAGCTGCGGTC 61.038 60.000 0.00 0.00 0.00 4.79
4480 4834 1.000486 TCCTTCTCCTAGCTGCGGT 60.000 57.895 0.00 0.00 0.00 5.68
4481 4835 1.323271 TGTCCTTCTCCTAGCTGCGG 61.323 60.000 0.00 0.00 0.00 5.69
4482 4836 0.102120 CTGTCCTTCTCCTAGCTGCG 59.898 60.000 0.00 0.00 0.00 5.18
4483 4837 0.179086 GCTGTCCTTCTCCTAGCTGC 60.179 60.000 0.00 0.00 0.00 5.25
4484 4838 0.463620 GGCTGTCCTTCTCCTAGCTG 59.536 60.000 0.00 0.00 34.89 4.24
4485 4839 0.689412 GGGCTGTCCTTCTCCTAGCT 60.689 60.000 0.00 0.00 34.89 3.32
4486 4840 0.689412 AGGGCTGTCCTTCTCCTAGC 60.689 60.000 0.00 0.00 45.47 3.42
4487 4841 2.312390 GTAGGGCTGTCCTTCTCCTAG 58.688 57.143 5.94 0.00 45.47 3.02
4488 4842 1.409802 CGTAGGGCTGTCCTTCTCCTA 60.410 57.143 5.94 0.00 45.47 2.94
4489 4843 0.684805 CGTAGGGCTGTCCTTCTCCT 60.685 60.000 5.94 0.00 45.47 3.69
4490 4844 0.683504 TCGTAGGGCTGTCCTTCTCC 60.684 60.000 5.94 0.00 45.47 3.71
4491 4845 0.456628 GTCGTAGGGCTGTCCTTCTC 59.543 60.000 5.94 0.00 45.47 2.87
4492 4846 1.313812 CGTCGTAGGGCTGTCCTTCT 61.314 60.000 5.94 0.00 45.47 2.85
4493 4847 1.139095 CGTCGTAGGGCTGTCCTTC 59.861 63.158 5.94 0.00 45.47 3.46
4494 4848 2.348888 CCGTCGTAGGGCTGTCCTT 61.349 63.158 5.94 0.00 45.47 3.36
4496 4850 2.280823 CTTCCGTCGTAGGGCTGTCC 62.281 65.000 0.00 0.00 0.00 4.02
4497 4851 1.139095 CTTCCGTCGTAGGGCTGTC 59.861 63.158 0.00 0.00 0.00 3.51
4498 4852 0.322816 TACTTCCGTCGTAGGGCTGT 60.323 55.000 0.00 0.00 0.00 4.40
4499 4853 0.813184 TTACTTCCGTCGTAGGGCTG 59.187 55.000 0.00 0.00 0.00 4.85
4500 4854 0.813821 GTTACTTCCGTCGTAGGGCT 59.186 55.000 0.00 0.00 0.00 5.19
4501 4855 0.527565 TGTTACTTCCGTCGTAGGGC 59.472 55.000 0.00 0.00 0.00 5.19
4502 4856 1.135286 GGTGTTACTTCCGTCGTAGGG 60.135 57.143 0.00 0.00 0.00 3.53
4503 4857 1.135286 GGGTGTTACTTCCGTCGTAGG 60.135 57.143 0.00 0.00 0.00 3.18
4504 4858 1.466360 CGGGTGTTACTTCCGTCGTAG 60.466 57.143 8.30 0.00 39.04 3.51
4505 4859 0.521291 CGGGTGTTACTTCCGTCGTA 59.479 55.000 8.30 0.00 39.04 3.43
4506 4860 1.286880 CGGGTGTTACTTCCGTCGT 59.713 57.895 8.30 0.00 39.04 4.34
4507 4861 1.444895 CCGGGTGTTACTTCCGTCG 60.445 63.158 13.47 0.00 41.98 5.12
4508 4862 0.389037 GTCCGGGTGTTACTTCCGTC 60.389 60.000 0.00 5.45 41.98 4.79
4509 4863 1.667722 GTCCGGGTGTTACTTCCGT 59.332 57.895 0.00 0.00 41.98 4.69
4510 4864 1.444895 CGTCCGGGTGTTACTTCCG 60.445 63.158 0.00 9.22 43.05 4.30
4511 4865 0.389037 GTCGTCCGGGTGTTACTTCC 60.389 60.000 0.00 0.00 0.00 3.46
4512 4866 0.730494 CGTCGTCCGGGTGTTACTTC 60.730 60.000 0.00 0.00 0.00 3.01
4513 4867 1.172180 TCGTCGTCCGGGTGTTACTT 61.172 55.000 0.00 0.00 37.11 2.24
4514 4868 1.580845 CTCGTCGTCCGGGTGTTACT 61.581 60.000 0.00 0.00 37.11 2.24
4515 4869 1.154150 CTCGTCGTCCGGGTGTTAC 60.154 63.158 0.00 0.00 37.11 2.50
4516 4870 2.334946 CCTCGTCGTCCGGGTGTTA 61.335 63.158 0.00 0.00 34.27 2.41
4517 4871 3.677648 CCTCGTCGTCCGGGTGTT 61.678 66.667 0.00 0.00 34.27 3.32
4518 4872 4.648626 TCCTCGTCGTCCGGGTGT 62.649 66.667 0.00 0.00 34.27 4.16
4519 4873 3.812019 CTCCTCGTCGTCCGGGTG 61.812 72.222 0.00 0.00 34.27 4.61
4520 4874 3.972971 CTCTCCTCGTCGTCCGGGT 62.973 68.421 0.00 0.00 34.27 5.28
4521 4875 3.203412 CTCTCCTCGTCGTCCGGG 61.203 72.222 0.00 0.00 37.11 5.73
4522 4876 3.203412 CCTCTCCTCGTCGTCCGG 61.203 72.222 0.00 0.00 37.11 5.14
4523 4877 2.125229 TCCTCTCCTCGTCGTCCG 60.125 66.667 0.00 0.00 38.13 4.79
4524 4878 1.078285 ACTCCTCTCCTCGTCGTCC 60.078 63.158 0.00 0.00 0.00 4.79
4525 4879 1.422950 CGACTCCTCTCCTCGTCGTC 61.423 65.000 0.00 0.00 42.89 4.20
4526 4880 1.448189 CGACTCCTCTCCTCGTCGT 60.448 63.158 0.00 0.00 42.89 4.34
4527 4881 3.401095 CGACTCCTCTCCTCGTCG 58.599 66.667 0.00 0.00 42.39 5.12
4528 4882 1.011333 CTTCGACTCCTCTCCTCGTC 58.989 60.000 0.00 0.00 0.00 4.20
4529 4883 0.393267 CCTTCGACTCCTCTCCTCGT 60.393 60.000 0.00 0.00 0.00 4.18
4530 4884 1.720694 GCCTTCGACTCCTCTCCTCG 61.721 65.000 0.00 0.00 0.00 4.63
4531 4885 1.388837 GGCCTTCGACTCCTCTCCTC 61.389 65.000 0.00 0.00 0.00 3.71
4532 4886 1.380650 GGCCTTCGACTCCTCTCCT 60.381 63.158 0.00 0.00 0.00 3.69
4533 4887 2.776913 CGGCCTTCGACTCCTCTCC 61.777 68.421 0.00 0.00 42.43 3.71
4534 4888 1.749638 TCGGCCTTCGACTCCTCTC 60.750 63.158 0.00 0.00 43.74 3.20
4535 4889 2.355502 TCGGCCTTCGACTCCTCT 59.644 61.111 0.00 0.00 43.74 3.69
4542 4896 1.006571 GACTTGTGTCGGCCTTCGA 60.007 57.895 0.00 0.00 46.77 3.71
4543 4897 3.550656 GACTTGTGTCGGCCTTCG 58.449 61.111 0.00 0.00 40.90 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.