Multiple sequence alignment - TraesCS1D01G201100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G201100 chr1D 100.000 5245 0 0 1 5245 284039863 284045107 0.000000e+00 9686.0
1 TraesCS1D01G201100 chr1D 93.799 758 27 8 4448 5200 162640129 162639387 0.000000e+00 1122.0
2 TraesCS1D01G201100 chr1B 91.417 3239 134 65 321 3483 385644380 385647550 0.000000e+00 4309.0
3 TraesCS1D01G201100 chr1B 93.562 932 41 3 3478 4392 385654889 385655818 0.000000e+00 1371.0
4 TraesCS1D01G201100 chr1A 92.587 2145 102 21 829 2940 355624128 355626248 0.000000e+00 3027.0
5 TraesCS1D01G201100 chr1A 93.714 1034 41 4 3383 4392 355626988 355628021 0.000000e+00 1528.0
6 TraesCS1D01G201100 chr1A 87.879 231 27 1 1 230 355586117 355586347 2.410000e-68 270.0
7 TraesCS1D01G201100 chr1A 88.660 97 11 0 2950 3046 355626293 355626389 9.230000e-23 119.0
8 TraesCS1D01G201100 chr3A 93.976 332 15 3 4448 4774 151003422 151003753 1.010000e-136 497.0
9 TraesCS1D01G201100 chr3A 96.053 76 3 0 4821 4896 151003752 151003827 1.980000e-24 124.0
10 TraesCS1D01G201100 chr5A 85.294 68 9 1 5142 5208 606462483 606462416 9.420000e-08 69.4
11 TraesCS1D01G201100 chr3D 84.507 71 9 2 5142 5210 564565356 564565286 9.420000e-08 69.4
12 TraesCS1D01G201100 chr7D 84.615 65 9 1 5142 5205 393116904 393116840 4.380000e-06 63.9
13 TraesCS1D01G201100 chr7D 100.000 28 0 0 1132 1159 607136729 607136756 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G201100 chr1D 284039863 284045107 5244 False 9686 9686 100.000000 1 5245 1 chr1D.!!$F1 5244
1 TraesCS1D01G201100 chr1D 162639387 162640129 742 True 1122 1122 93.799000 4448 5200 1 chr1D.!!$R1 752
2 TraesCS1D01G201100 chr1B 385644380 385647550 3170 False 4309 4309 91.417000 321 3483 1 chr1B.!!$F1 3162
3 TraesCS1D01G201100 chr1B 385654889 385655818 929 False 1371 1371 93.562000 3478 4392 1 chr1B.!!$F2 914
4 TraesCS1D01G201100 chr1A 355624128 355628021 3893 False 1558 3027 91.653667 829 4392 3 chr1A.!!$F2 3563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.034059 CCCTTCTACATAGCGGGCAG 59.966 60.0 0.0 0.0 30.66 4.85 F
111 112 0.035458 ATCCGCCATCCGAATCCTTC 59.965 55.0 0.0 0.0 40.02 3.46 F
544 545 0.038166 ATGCTCAACACGGGTGGAAT 59.962 50.0 0.0 0.0 34.19 3.01 F
1998 2095 0.036671 GGGGGAAGTACAAGACCGTG 60.037 60.0 0.0 0.0 0.00 4.94 F
3608 4024 0.675083 CAGCTTCCATGTGCCAAACA 59.325 50.0 0.0 0.0 44.79 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 1898 0.308993 AAGAACTCAAACGCTGCAGC 59.691 50.000 29.12 29.12 37.78 5.25 R
1998 2095 9.771534 GTAAGATAGAATATTATGGAGATGGCC 57.228 37.037 0.00 0.00 0.00 5.36 R
2334 2431 4.092116 AGCCTGCTTCTTTTTACTCTGT 57.908 40.909 0.00 0.00 0.00 3.41 R
3747 4163 0.030369 CCGGTGTATCGTCTGGCTAC 59.970 60.000 0.00 0.00 0.00 3.58 R
5216 5661 0.321919 GCACTCCTGCCATTGAGTCA 60.322 55.000 0.00 0.00 39.76 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.489563 GCGTCATTCGTATAGCAAGTG 57.510 47.619 0.00 0.00 42.13 3.16
21 22 3.113322 GCGTCATTCGTATAGCAAGTGA 58.887 45.455 0.00 0.00 42.13 3.41
22 23 3.180584 GCGTCATTCGTATAGCAAGTGAG 59.819 47.826 0.00 0.00 42.13 3.51
23 24 4.598062 CGTCATTCGTATAGCAAGTGAGA 58.402 43.478 0.00 0.00 34.52 3.27
24 25 5.215903 CGTCATTCGTATAGCAAGTGAGAT 58.784 41.667 0.00 0.00 34.52 2.75
25 26 5.116225 CGTCATTCGTATAGCAAGTGAGATG 59.884 44.000 0.00 0.00 34.52 2.90
26 27 6.209361 GTCATTCGTATAGCAAGTGAGATGA 58.791 40.000 0.00 0.00 0.00 2.92
27 28 6.865726 GTCATTCGTATAGCAAGTGAGATGAT 59.134 38.462 0.00 0.00 0.00 2.45
28 29 6.865205 TCATTCGTATAGCAAGTGAGATGATG 59.135 38.462 0.00 0.00 0.00 3.07
29 30 5.774498 TCGTATAGCAAGTGAGATGATGT 57.226 39.130 0.00 0.00 0.00 3.06
30 31 6.149129 TCGTATAGCAAGTGAGATGATGTT 57.851 37.500 0.00 0.00 0.00 2.71
31 32 6.573434 TCGTATAGCAAGTGAGATGATGTTT 58.427 36.000 0.00 0.00 0.00 2.83
32 33 6.697455 TCGTATAGCAAGTGAGATGATGTTTC 59.303 38.462 0.00 0.00 0.00 2.78
33 34 6.074088 CGTATAGCAAGTGAGATGATGTTTCC 60.074 42.308 0.00 0.00 0.00 3.13
34 35 3.005554 AGCAAGTGAGATGATGTTTCCG 58.994 45.455 0.00 0.00 0.00 4.30
35 36 2.096496 GCAAGTGAGATGATGTTTCCGG 59.904 50.000 0.00 0.00 0.00 5.14
36 37 2.029838 AGTGAGATGATGTTTCCGGC 57.970 50.000 0.00 0.00 0.00 6.13
37 38 1.556911 AGTGAGATGATGTTTCCGGCT 59.443 47.619 0.00 0.00 0.00 5.52
38 39 1.936547 GTGAGATGATGTTTCCGGCTC 59.063 52.381 0.00 0.00 0.00 4.70
39 40 1.134401 TGAGATGATGTTTCCGGCTCC 60.134 52.381 0.00 0.00 0.00 4.70
40 41 0.181350 AGATGATGTTTCCGGCTCCC 59.819 55.000 0.00 0.00 0.00 4.30
41 42 0.181350 GATGATGTTTCCGGCTCCCT 59.819 55.000 0.00 0.00 0.00 4.20
42 43 0.625849 ATGATGTTTCCGGCTCCCTT 59.374 50.000 0.00 0.00 0.00 3.95
43 44 0.035439 TGATGTTTCCGGCTCCCTTC 60.035 55.000 0.00 0.00 0.00 3.46
44 45 0.253327 GATGTTTCCGGCTCCCTTCT 59.747 55.000 0.00 0.00 0.00 2.85
45 46 1.485066 GATGTTTCCGGCTCCCTTCTA 59.515 52.381 0.00 0.00 0.00 2.10
46 47 0.611714 TGTTTCCGGCTCCCTTCTAC 59.388 55.000 0.00 0.00 0.00 2.59
47 48 0.611714 GTTTCCGGCTCCCTTCTACA 59.388 55.000 0.00 0.00 0.00 2.74
48 49 1.209747 GTTTCCGGCTCCCTTCTACAT 59.790 52.381 0.00 0.00 0.00 2.29
49 50 2.433239 GTTTCCGGCTCCCTTCTACATA 59.567 50.000 0.00 0.00 0.00 2.29
50 51 1.996798 TCCGGCTCCCTTCTACATAG 58.003 55.000 0.00 0.00 0.00 2.23
51 52 0.318762 CCGGCTCCCTTCTACATAGC 59.681 60.000 0.00 0.00 0.00 2.97
52 53 0.039074 CGGCTCCCTTCTACATAGCG 60.039 60.000 0.00 0.00 33.96 4.26
53 54 0.318762 GGCTCCCTTCTACATAGCGG 59.681 60.000 0.00 0.00 33.96 5.52
54 55 0.318762 GCTCCCTTCTACATAGCGGG 59.681 60.000 6.73 6.73 36.02 6.13
55 56 0.318762 CTCCCTTCTACATAGCGGGC 59.681 60.000 7.77 0.00 35.22 6.13
56 57 0.397957 TCCCTTCTACATAGCGGGCA 60.398 55.000 7.77 0.00 35.22 5.36
57 58 0.034059 CCCTTCTACATAGCGGGCAG 59.966 60.000 0.00 0.00 30.66 4.85
58 59 1.040646 CCTTCTACATAGCGGGCAGA 58.959 55.000 0.00 0.00 0.00 4.26
59 60 1.000283 CCTTCTACATAGCGGGCAGAG 60.000 57.143 0.00 0.00 0.00 3.35
60 61 1.000283 CTTCTACATAGCGGGCAGAGG 60.000 57.143 0.00 0.00 0.00 3.69
61 62 1.005630 CTACATAGCGGGCAGAGGC 60.006 63.158 0.00 0.00 40.13 4.70
74 75 2.659428 GCAGAGGCCACAATTTATCCT 58.341 47.619 5.01 0.00 0.00 3.24
75 76 3.820557 GCAGAGGCCACAATTTATCCTA 58.179 45.455 5.01 0.00 0.00 2.94
76 77 3.817647 GCAGAGGCCACAATTTATCCTAG 59.182 47.826 5.01 0.00 0.00 3.02
77 78 4.687219 GCAGAGGCCACAATTTATCCTAGT 60.687 45.833 5.01 0.00 0.00 2.57
78 79 4.818546 CAGAGGCCACAATTTATCCTAGTG 59.181 45.833 5.01 0.00 0.00 2.74
79 80 3.555966 AGGCCACAATTTATCCTAGTGC 58.444 45.455 5.01 0.00 0.00 4.40
80 81 2.290641 GGCCACAATTTATCCTAGTGCG 59.709 50.000 0.00 0.00 0.00 5.34
81 82 2.287009 GCCACAATTTATCCTAGTGCGC 60.287 50.000 0.00 0.00 0.00 6.09
82 83 3.206150 CCACAATTTATCCTAGTGCGCT 58.794 45.455 9.73 4.58 0.00 5.92
83 84 3.627577 CCACAATTTATCCTAGTGCGCTT 59.372 43.478 9.73 0.00 0.00 4.68
84 85 4.496341 CCACAATTTATCCTAGTGCGCTTG 60.496 45.833 9.73 2.70 0.00 4.01
85 86 3.065371 ACAATTTATCCTAGTGCGCTTGC 59.935 43.478 9.73 0.00 39.78 4.01
86 87 1.663695 TTTATCCTAGTGCGCTTGCC 58.336 50.000 9.73 0.00 38.03 4.52
87 88 0.539518 TTATCCTAGTGCGCTTGCCA 59.460 50.000 9.73 0.00 38.03 4.92
88 89 0.104855 TATCCTAGTGCGCTTGCCAG 59.895 55.000 9.73 0.00 38.03 4.85
89 90 3.503363 CCTAGTGCGCTTGCCAGC 61.503 66.667 9.73 0.00 43.41 4.85
97 98 2.641559 GCTTGCCAGCATATCCGC 59.358 61.111 4.63 0.00 46.49 5.54
98 99 2.912624 GCTTGCCAGCATATCCGCC 61.913 63.158 4.63 0.00 46.49 6.13
99 100 1.526686 CTTGCCAGCATATCCGCCA 60.527 57.895 0.00 0.00 0.00 5.69
100 101 0.892358 CTTGCCAGCATATCCGCCAT 60.892 55.000 0.00 0.00 0.00 4.40
101 102 0.890542 TTGCCAGCATATCCGCCATC 60.891 55.000 0.00 0.00 0.00 3.51
102 103 2.042831 GCCAGCATATCCGCCATCC 61.043 63.158 0.00 0.00 0.00 3.51
103 104 1.742880 CCAGCATATCCGCCATCCG 60.743 63.158 0.00 0.00 0.00 4.18
104 105 1.293179 CAGCATATCCGCCATCCGA 59.707 57.895 0.00 0.00 40.02 4.55
105 106 0.320683 CAGCATATCCGCCATCCGAA 60.321 55.000 0.00 0.00 40.02 4.30
106 107 0.615331 AGCATATCCGCCATCCGAAT 59.385 50.000 0.00 0.00 40.02 3.34
107 108 1.009829 GCATATCCGCCATCCGAATC 58.990 55.000 0.00 0.00 40.02 2.52
108 109 1.656652 CATATCCGCCATCCGAATCC 58.343 55.000 0.00 0.00 40.02 3.01
109 110 1.208052 CATATCCGCCATCCGAATCCT 59.792 52.381 0.00 0.00 40.02 3.24
110 111 1.348064 TATCCGCCATCCGAATCCTT 58.652 50.000 0.00 0.00 40.02 3.36
111 112 0.035458 ATCCGCCATCCGAATCCTTC 59.965 55.000 0.00 0.00 40.02 3.46
112 113 1.598130 CCGCCATCCGAATCCTTCC 60.598 63.158 0.00 0.00 40.02 3.46
113 114 1.447643 CGCCATCCGAATCCTTCCT 59.552 57.895 0.00 0.00 40.02 3.36
114 115 0.179045 CGCCATCCGAATCCTTCCTT 60.179 55.000 0.00 0.00 40.02 3.36
115 116 1.312815 GCCATCCGAATCCTTCCTTG 58.687 55.000 0.00 0.00 0.00 3.61
116 117 1.972872 CCATCCGAATCCTTCCTTGG 58.027 55.000 0.00 0.00 0.00 3.61
117 118 1.490490 CCATCCGAATCCTTCCTTGGA 59.510 52.381 0.00 0.00 40.82 3.53
127 128 4.656100 TCCTTCCTTGGATTGTCAATCA 57.344 40.909 23.67 9.91 39.71 2.57
128 129 4.335416 TCCTTCCTTGGATTGTCAATCAC 58.665 43.478 23.67 14.78 39.71 3.06
129 130 3.127548 CCTTCCTTGGATTGTCAATCACG 59.872 47.826 23.67 12.50 39.71 4.35
130 131 2.083774 TCCTTGGATTGTCAATCACGC 58.916 47.619 23.67 9.86 39.71 5.34
131 132 1.811965 CCTTGGATTGTCAATCACGCA 59.188 47.619 23.67 12.05 39.71 5.24
132 133 2.228582 CCTTGGATTGTCAATCACGCAA 59.771 45.455 23.67 17.42 39.71 4.85
133 134 3.305267 CCTTGGATTGTCAATCACGCAAA 60.305 43.478 23.67 10.67 39.71 3.68
134 135 3.557577 TGGATTGTCAATCACGCAAAG 57.442 42.857 23.67 0.00 39.71 2.77
135 136 3.145286 TGGATTGTCAATCACGCAAAGA 58.855 40.909 23.67 0.00 39.71 2.52
136 137 3.567585 TGGATTGTCAATCACGCAAAGAA 59.432 39.130 23.67 0.00 39.71 2.52
137 138 4.218200 TGGATTGTCAATCACGCAAAGAAT 59.782 37.500 23.67 0.00 39.71 2.40
138 139 5.163513 GGATTGTCAATCACGCAAAGAATT 58.836 37.500 23.67 0.00 39.71 2.17
139 140 5.634859 GGATTGTCAATCACGCAAAGAATTT 59.365 36.000 23.67 0.00 38.12 1.82
140 141 6.519315 GATTGTCAATCACGCAAAGAATTTG 58.481 36.000 18.80 0.00 46.53 2.32
141 142 6.400303 GATTGTCAATCACGCAAAGAATTTGG 60.400 38.462 18.80 0.00 45.30 3.28
142 143 9.650451 GATTGTCAATCACGCAAAGAATTTGGC 62.650 40.741 18.80 0.00 45.30 4.52
152 153 3.986996 AAGAATTTGGCCTTTGGGATG 57.013 42.857 3.32 0.00 33.58 3.51
153 154 3.188880 AGAATTTGGCCTTTGGGATGA 57.811 42.857 3.32 0.00 33.58 2.92
154 155 3.102204 AGAATTTGGCCTTTGGGATGAG 58.898 45.455 3.32 0.00 33.58 2.90
155 156 2.925966 ATTTGGCCTTTGGGATGAGA 57.074 45.000 3.32 0.00 33.58 3.27
156 157 2.692709 TTTGGCCTTTGGGATGAGAA 57.307 45.000 3.32 0.00 33.58 2.87
157 158 2.220653 TTGGCCTTTGGGATGAGAAG 57.779 50.000 3.32 0.00 33.58 2.85
158 159 0.323725 TGGCCTTTGGGATGAGAAGC 60.324 55.000 3.32 0.00 33.58 3.86
159 160 1.379642 GGCCTTTGGGATGAGAAGCG 61.380 60.000 0.00 0.00 33.58 4.68
160 161 0.392998 GCCTTTGGGATGAGAAGCGA 60.393 55.000 0.00 0.00 33.58 4.93
161 162 1.950484 GCCTTTGGGATGAGAAGCGAA 60.950 52.381 0.00 0.00 33.58 4.70
162 163 2.648059 CCTTTGGGATGAGAAGCGAAT 58.352 47.619 0.00 0.00 33.58 3.34
163 164 2.615912 CCTTTGGGATGAGAAGCGAATC 59.384 50.000 0.00 0.00 33.58 2.52
164 165 1.939974 TTGGGATGAGAAGCGAATCG 58.060 50.000 0.00 0.00 0.00 3.34
165 166 0.824109 TGGGATGAGAAGCGAATCGT 59.176 50.000 4.07 0.00 0.00 3.73
166 167 1.212616 GGGATGAGAAGCGAATCGTG 58.787 55.000 4.07 0.00 0.00 4.35
167 168 0.579156 GGATGAGAAGCGAATCGTGC 59.421 55.000 4.07 0.00 0.00 5.34
168 169 0.228238 GATGAGAAGCGAATCGTGCG 59.772 55.000 4.07 0.00 37.44 5.34
169 170 1.148157 ATGAGAAGCGAATCGTGCGG 61.148 55.000 4.07 0.00 37.44 5.69
170 171 3.144120 GAGAAGCGAATCGTGCGGC 62.144 63.158 4.07 0.00 37.44 6.53
171 172 3.487202 GAAGCGAATCGTGCGGCA 61.487 61.111 4.07 0.00 37.44 5.69
172 173 3.702334 GAAGCGAATCGTGCGGCAC 62.702 63.158 22.78 22.78 37.44 5.01
174 175 3.864686 GCGAATCGTGCGGCACAT 61.865 61.111 30.23 19.79 33.40 3.21
175 176 2.021793 CGAATCGTGCGGCACATG 59.978 61.111 30.23 16.56 33.40 3.21
179 180 4.377708 TCGTGCGGCACATGAGCT 62.378 61.111 30.23 0.00 39.44 4.09
180 181 2.509111 CGTGCGGCACATGAGCTA 60.509 61.111 30.23 0.00 37.49 3.32
181 182 2.520039 CGTGCGGCACATGAGCTAG 61.520 63.158 30.23 9.67 37.49 3.42
182 183 2.512286 TGCGGCACATGAGCTAGC 60.512 61.111 21.44 21.44 38.13 3.42
183 184 2.512286 GCGGCACATGAGCTAGCA 60.512 61.111 18.83 0.00 37.78 3.49
184 185 2.817423 GCGGCACATGAGCTAGCAC 61.817 63.158 18.83 11.88 37.78 4.40
185 186 2.520039 CGGCACATGAGCTAGCACG 61.520 63.158 18.83 5.77 34.17 5.34
186 187 2.176273 GGCACATGAGCTAGCACGG 61.176 63.158 18.83 9.66 34.17 4.94
187 188 1.448540 GCACATGAGCTAGCACGGT 60.449 57.895 18.83 10.33 0.00 4.83
188 189 1.021390 GCACATGAGCTAGCACGGTT 61.021 55.000 18.83 0.00 0.00 4.44
189 190 1.442769 CACATGAGCTAGCACGGTTT 58.557 50.000 18.83 0.00 0.00 3.27
190 191 2.616960 CACATGAGCTAGCACGGTTTA 58.383 47.619 18.83 0.00 0.00 2.01
191 192 2.604914 CACATGAGCTAGCACGGTTTAG 59.395 50.000 18.83 0.68 0.00 1.85
192 193 2.233922 ACATGAGCTAGCACGGTTTAGT 59.766 45.455 18.83 1.32 0.00 2.24
193 194 3.262420 CATGAGCTAGCACGGTTTAGTT 58.738 45.455 18.83 0.00 0.00 2.24
194 195 3.396260 TGAGCTAGCACGGTTTAGTTT 57.604 42.857 18.83 0.00 0.00 2.66
195 196 3.323243 TGAGCTAGCACGGTTTAGTTTC 58.677 45.455 18.83 1.20 0.00 2.78
196 197 3.243941 TGAGCTAGCACGGTTTAGTTTCA 60.244 43.478 18.83 4.09 0.00 2.69
197 198 3.326747 AGCTAGCACGGTTTAGTTTCAG 58.673 45.455 18.83 0.00 0.00 3.02
198 199 3.064931 GCTAGCACGGTTTAGTTTCAGT 58.935 45.455 10.63 0.00 0.00 3.41
199 200 4.021719 AGCTAGCACGGTTTAGTTTCAGTA 60.022 41.667 18.83 0.00 0.00 2.74
200 201 4.687483 GCTAGCACGGTTTAGTTTCAGTAA 59.313 41.667 10.63 0.00 0.00 2.24
201 202 5.350640 GCTAGCACGGTTTAGTTTCAGTAAT 59.649 40.000 10.63 0.00 0.00 1.89
202 203 6.532657 GCTAGCACGGTTTAGTTTCAGTAATA 59.467 38.462 10.63 0.00 0.00 0.98
203 204 7.063780 GCTAGCACGGTTTAGTTTCAGTAATAA 59.936 37.037 10.63 0.00 0.00 1.40
204 205 7.360575 AGCACGGTTTAGTTTCAGTAATAAG 57.639 36.000 0.00 0.00 0.00 1.73
205 206 7.156673 AGCACGGTTTAGTTTCAGTAATAAGA 58.843 34.615 0.00 0.00 0.00 2.10
206 207 7.658575 AGCACGGTTTAGTTTCAGTAATAAGAA 59.341 33.333 0.00 0.00 0.00 2.52
207 208 8.448615 GCACGGTTTAGTTTCAGTAATAAGAAT 58.551 33.333 0.00 0.00 0.00 2.40
210 211 9.983804 CGGTTTAGTTTCAGTAATAAGAATTCC 57.016 33.333 0.65 0.00 0.00 3.01
219 220 9.667107 TTCAGTAATAAGAATTCCTGTAGTTGG 57.333 33.333 0.65 0.00 32.43 3.77
220 221 8.265055 TCAGTAATAAGAATTCCTGTAGTTGGG 58.735 37.037 0.65 0.00 32.43 4.12
221 222 8.047310 CAGTAATAAGAATTCCTGTAGTTGGGT 58.953 37.037 0.65 0.00 27.49 4.51
222 223 8.265764 AGTAATAAGAATTCCTGTAGTTGGGTC 58.734 37.037 0.65 0.00 0.00 4.46
223 224 3.611766 AGAATTCCTGTAGTTGGGTCG 57.388 47.619 0.65 0.00 0.00 4.79
224 225 3.170717 AGAATTCCTGTAGTTGGGTCGA 58.829 45.455 0.65 0.00 0.00 4.20
225 226 3.775316 AGAATTCCTGTAGTTGGGTCGAT 59.225 43.478 0.65 0.00 0.00 3.59
226 227 3.543680 ATTCCTGTAGTTGGGTCGATG 57.456 47.619 0.00 0.00 0.00 3.84
227 228 2.225382 TCCTGTAGTTGGGTCGATGA 57.775 50.000 0.00 0.00 0.00 2.92
228 229 2.531771 TCCTGTAGTTGGGTCGATGAA 58.468 47.619 0.00 0.00 0.00 2.57
229 230 2.232941 TCCTGTAGTTGGGTCGATGAAC 59.767 50.000 0.00 0.00 0.00 3.18
230 231 2.618053 CTGTAGTTGGGTCGATGAACC 58.382 52.381 0.00 0.00 40.41 3.62
235 236 3.623848 TGGGTCGATGAACCAGTTG 57.376 52.632 0.00 0.00 45.42 3.16
236 237 1.052617 TGGGTCGATGAACCAGTTGA 58.947 50.000 0.00 0.00 45.42 3.18
237 238 1.001974 TGGGTCGATGAACCAGTTGAG 59.998 52.381 0.00 0.00 45.42 3.02
238 239 1.275291 GGGTCGATGAACCAGTTGAGA 59.725 52.381 0.00 0.00 39.63 3.27
239 240 2.289444 GGGTCGATGAACCAGTTGAGAA 60.289 50.000 0.00 0.00 39.63 2.87
240 241 3.399330 GGTCGATGAACCAGTTGAGAAA 58.601 45.455 0.00 0.00 39.27 2.52
241 242 3.813166 GGTCGATGAACCAGTTGAGAAAA 59.187 43.478 0.00 0.00 39.27 2.29
242 243 4.319549 GGTCGATGAACCAGTTGAGAAAAC 60.320 45.833 0.00 0.00 39.27 2.43
243 244 4.511826 GTCGATGAACCAGTTGAGAAAACT 59.488 41.667 0.00 0.00 0.00 2.66
244 245 4.511454 TCGATGAACCAGTTGAGAAAACTG 59.489 41.667 10.56 10.56 45.33 3.16
264 265 9.685276 AAAACTGATGAATGATATACTTCACCA 57.315 29.630 2.44 0.00 34.43 4.17
265 266 9.685276 AAACTGATGAATGATATACTTCACCAA 57.315 29.630 2.44 0.00 34.43 3.67
266 267 9.685276 AACTGATGAATGATATACTTCACCAAA 57.315 29.630 2.44 0.00 34.43 3.28
267 268 9.685276 ACTGATGAATGATATACTTCACCAAAA 57.315 29.630 2.44 0.00 34.43 2.44
287 288 5.766150 AAAAATCACATCGTCTGGTTTGA 57.234 34.783 0.00 0.00 0.00 2.69
288 289 5.964958 AAAATCACATCGTCTGGTTTGAT 57.035 34.783 0.00 0.00 0.00 2.57
289 290 5.964958 AAATCACATCGTCTGGTTTGATT 57.035 34.783 0.00 0.00 35.67 2.57
290 291 5.964958 AATCACATCGTCTGGTTTGATTT 57.035 34.783 0.00 0.00 31.21 2.17
291 292 4.747540 TCACATCGTCTGGTTTGATTTG 57.252 40.909 0.00 0.00 0.00 2.32
292 293 4.384940 TCACATCGTCTGGTTTGATTTGA 58.615 39.130 0.00 0.00 0.00 2.69
293 294 5.003160 TCACATCGTCTGGTTTGATTTGAT 58.997 37.500 0.00 0.00 0.00 2.57
294 295 5.473162 TCACATCGTCTGGTTTGATTTGATT 59.527 36.000 0.00 0.00 0.00 2.57
295 296 6.016360 TCACATCGTCTGGTTTGATTTGATTT 60.016 34.615 0.00 0.00 0.00 2.17
296 297 6.088483 CACATCGTCTGGTTTGATTTGATTTG 59.912 38.462 0.00 0.00 0.00 2.32
297 298 5.766150 TCGTCTGGTTTGATTTGATTTGT 57.234 34.783 0.00 0.00 0.00 2.83
298 299 5.518812 TCGTCTGGTTTGATTTGATTTGTG 58.481 37.500 0.00 0.00 0.00 3.33
299 300 4.681025 CGTCTGGTTTGATTTGATTTGTGG 59.319 41.667 0.00 0.00 0.00 4.17
300 301 5.507149 CGTCTGGTTTGATTTGATTTGTGGA 60.507 40.000 0.00 0.00 0.00 4.02
301 302 5.922544 GTCTGGTTTGATTTGATTTGTGGAG 59.077 40.000 0.00 0.00 0.00 3.86
302 303 5.832595 TCTGGTTTGATTTGATTTGTGGAGA 59.167 36.000 0.00 0.00 0.00 3.71
303 304 6.494491 TCTGGTTTGATTTGATTTGTGGAGAT 59.506 34.615 0.00 0.00 0.00 2.75
304 305 6.457355 TGGTTTGATTTGATTTGTGGAGATG 58.543 36.000 0.00 0.00 0.00 2.90
305 306 6.267242 TGGTTTGATTTGATTTGTGGAGATGA 59.733 34.615 0.00 0.00 0.00 2.92
306 307 6.810182 GGTTTGATTTGATTTGTGGAGATGAG 59.190 38.462 0.00 0.00 0.00 2.90
307 308 5.571784 TGATTTGATTTGTGGAGATGAGC 57.428 39.130 0.00 0.00 0.00 4.26
308 309 5.258841 TGATTTGATTTGTGGAGATGAGCT 58.741 37.500 0.00 0.00 0.00 4.09
309 310 5.713389 TGATTTGATTTGTGGAGATGAGCTT 59.287 36.000 0.00 0.00 0.00 3.74
310 311 6.885918 TGATTTGATTTGTGGAGATGAGCTTA 59.114 34.615 0.00 0.00 0.00 3.09
311 312 7.394077 TGATTTGATTTGTGGAGATGAGCTTAA 59.606 33.333 0.00 0.00 0.00 1.85
312 313 6.748333 TTGATTTGTGGAGATGAGCTTAAG 57.252 37.500 0.00 0.00 0.00 1.85
313 314 4.637534 TGATTTGTGGAGATGAGCTTAAGC 59.362 41.667 20.09 20.09 42.49 3.09
314 315 2.698855 TGTGGAGATGAGCTTAAGCC 57.301 50.000 23.71 15.26 43.38 4.35
315 316 2.191400 TGTGGAGATGAGCTTAAGCCT 58.809 47.619 23.71 13.41 43.38 4.58
316 317 2.093288 TGTGGAGATGAGCTTAAGCCTG 60.093 50.000 23.71 0.00 43.38 4.85
317 318 2.169352 GTGGAGATGAGCTTAAGCCTGA 59.831 50.000 23.71 8.42 43.38 3.86
318 319 2.840038 TGGAGATGAGCTTAAGCCTGAA 59.160 45.455 23.71 7.58 43.38 3.02
319 320 3.118482 TGGAGATGAGCTTAAGCCTGAAG 60.118 47.826 23.71 0.00 43.38 3.02
330 331 7.426410 AGCTTAAGCCTGAAGTTTAGAAAAAC 58.574 34.615 23.71 0.00 42.70 2.43
340 341 8.925161 TGAAGTTTAGAAAAACAAGTGAATGG 57.075 30.769 4.04 0.00 46.18 3.16
370 371 1.131638 TGTGGATAGATGGACAGCCC 58.868 55.000 0.00 0.00 0.00 5.19
406 407 1.228245 GTCATGCCCCACACACACT 60.228 57.895 0.00 0.00 0.00 3.55
409 410 0.822944 CATGCCCCACACACACTTCA 60.823 55.000 0.00 0.00 0.00 3.02
410 411 0.106268 ATGCCCCACACACACTTCAA 60.106 50.000 0.00 0.00 0.00 2.69
411 412 0.106268 TGCCCCACACACACTTCAAT 60.106 50.000 0.00 0.00 0.00 2.57
412 413 0.598065 GCCCCACACACACTTCAATC 59.402 55.000 0.00 0.00 0.00 2.67
413 414 1.979855 CCCCACACACACTTCAATCA 58.020 50.000 0.00 0.00 0.00 2.57
453 454 3.710326 AAGGGAAAAACAAGCTTCGAC 57.290 42.857 0.00 0.00 0.00 4.20
479 480 2.358737 CAGGGCAGGGACGAACAC 60.359 66.667 0.00 0.00 0.00 3.32
537 538 1.238439 AAAGGACATGCTCAACACGG 58.762 50.000 0.00 0.00 0.00 4.94
543 544 0.888736 CATGCTCAACACGGGTGGAA 60.889 55.000 0.00 0.00 34.19 3.53
544 545 0.038166 ATGCTCAACACGGGTGGAAT 59.962 50.000 0.00 0.00 34.19 3.01
552 553 0.725117 CACGGGTGGAATAAAGTCGC 59.275 55.000 0.00 0.00 0.00 5.19
554 555 1.426041 CGGGTGGAATAAAGTCGCCG 61.426 60.000 0.00 0.00 32.26 6.46
568 569 2.577059 GCCGGTGCTACTGCTACA 59.423 61.111 1.90 0.00 40.48 2.74
570 571 1.945354 GCCGGTGCTACTGCTACAGA 61.945 60.000 1.90 0.00 40.48 3.41
571 572 0.101399 CCGGTGCTACTGCTACAGAG 59.899 60.000 0.78 0.00 40.48 3.35
572 573 0.101399 CGGTGCTACTGCTACAGAGG 59.899 60.000 0.78 0.00 40.48 3.69
573 574 0.461961 GGTGCTACTGCTACAGAGGG 59.538 60.000 0.78 0.00 40.48 4.30
574 575 1.475403 GTGCTACTGCTACAGAGGGA 58.525 55.000 0.78 0.00 40.48 4.20
575 576 1.825474 GTGCTACTGCTACAGAGGGAA 59.175 52.381 0.78 0.00 40.48 3.97
592 612 1.490910 GGAATCAGGGAAGATCCGGTT 59.509 52.381 0.00 0.00 37.43 4.44
595 615 0.535335 TCAGGGAAGATCCGGTTTCG 59.465 55.000 0.00 0.00 37.43 3.46
603 623 1.134560 AGATCCGGTTTCGCTGTCTAC 59.865 52.381 0.00 0.00 34.56 2.59
621 641 8.890124 CTGTCTACAGCAGTAGTATACTTAGA 57.110 38.462 11.40 7.34 42.71 2.10
631 651 6.710692 GTAGTATACTTAGAGCTCGAGGAC 57.289 45.833 15.58 14.97 38.91 3.85
632 652 5.293319 AGTATACTTAGAGCTCGAGGACA 57.707 43.478 15.58 2.74 0.00 4.02
633 653 5.871834 AGTATACTTAGAGCTCGAGGACAT 58.128 41.667 15.58 11.81 0.00 3.06
650 672 4.229123 AGGACATGAGGAAATGAATGGAGT 59.771 41.667 0.00 0.00 0.00 3.85
658 680 2.236489 AATGAATGGAGTTGGGTGGG 57.764 50.000 0.00 0.00 0.00 4.61
681 703 3.632604 TCTGAATAGAAAGCGACGGAGAT 59.367 43.478 0.00 0.00 0.00 2.75
686 708 7.654568 TGAATAGAAAGCGACGGAGATAATTA 58.345 34.615 0.00 0.00 0.00 1.40
698 720 6.642917 ACGGAGATAATTAAAATACGCAACG 58.357 36.000 0.00 0.00 0.00 4.10
712 734 3.704609 AACGCGCGGTAAACACGG 61.705 61.111 35.22 1.83 0.00 4.94
717 739 4.729798 GCGGTAAACACGGCGCAC 62.730 66.667 10.83 0.00 0.00 5.34
727 749 3.587602 CGGCGCACGCAAATAATG 58.412 55.556 17.69 0.00 44.11 1.90
737 759 2.819608 ACGCAAATAATGAAGCCACAGT 59.180 40.909 0.00 0.00 0.00 3.55
789 811 0.453390 GTGCCCTGATGCTGCTTAAC 59.547 55.000 0.00 0.00 0.00 2.01
902 941 3.787001 GAGGCTGGAACGGGAGGG 61.787 72.222 0.00 0.00 33.56 4.30
903 942 4.332543 AGGCTGGAACGGGAGGGA 62.333 66.667 0.00 0.00 33.56 4.20
904 943 3.787001 GGCTGGAACGGGAGGGAG 61.787 72.222 0.00 0.00 33.56 4.30
905 944 4.475135 GCTGGAACGGGAGGGAGC 62.475 72.222 0.00 0.00 33.56 4.70
906 945 4.148825 CTGGAACGGGAGGGAGCG 62.149 72.222 0.00 0.00 0.00 5.03
1046 1096 1.461268 TCCTCTCCCACCAGCACAA 60.461 57.895 0.00 0.00 0.00 3.33
1102 1153 1.295101 CCATTCCCCAAAAACGCCC 59.705 57.895 0.00 0.00 0.00 6.13
1140 1191 4.833478 TTTATTTCTCTGCTCTGGCTCT 57.167 40.909 0.00 0.00 39.59 4.09
1170 1221 0.039978 CGGCGGCTCTACTACATCAG 60.040 60.000 7.61 0.00 0.00 2.90
1193 1250 4.559862 AATCTTCTTCTACCACCACCAG 57.440 45.455 0.00 0.00 0.00 4.00
1231 1290 2.672381 GCAAGCAGTGAGAGATTGAGAC 59.328 50.000 0.00 0.00 0.00 3.36
1282 1341 0.321653 GGTTCAGATTCAGCACCGGT 60.322 55.000 0.00 0.00 0.00 5.28
1369 1431 3.561143 ACGCTCATCCTGTTAGATCTCT 58.439 45.455 0.00 0.00 0.00 3.10
1371 1433 3.567585 CGCTCATCCTGTTAGATCTCTCA 59.432 47.826 0.00 0.00 0.00 3.27
1373 1435 4.559300 GCTCATCCTGTTAGATCTCTCAGC 60.559 50.000 16.78 6.37 0.00 4.26
1374 1436 3.894427 TCATCCTGTTAGATCTCTCAGCC 59.106 47.826 16.78 0.00 0.00 4.85
1375 1437 2.302260 TCCTGTTAGATCTCTCAGCCG 58.698 52.381 16.78 8.38 0.00 5.52
1376 1438 1.269517 CCTGTTAGATCTCTCAGCCGC 60.270 57.143 16.78 0.00 0.00 6.53
1470 1537 3.589988 CAACTTAGATTCGCACTCCTGT 58.410 45.455 0.00 0.00 0.00 4.00
1498 1565 1.005748 CTCTGCACTGACGCTTGGA 60.006 57.895 0.00 0.00 0.00 3.53
1565 1632 4.229582 AGCTCCCTAAATTGGTCAACCATA 59.770 41.667 2.03 0.00 46.97 2.74
1616 1710 5.942961 TGGTCACCTTTAACTTGGTTCATA 58.057 37.500 0.00 0.00 33.75 2.15
1648 1742 1.800655 GCATACAGGTCTCGTCAGCAG 60.801 57.143 0.00 0.00 0.00 4.24
1657 1751 1.067565 TCTCGTCAGCAGATCACAACC 60.068 52.381 0.00 0.00 0.00 3.77
1658 1752 0.678950 TCGTCAGCAGATCACAACCA 59.321 50.000 0.00 0.00 0.00 3.67
1700 1794 3.862642 GCTCCTGCTATTATCTTGGGTCG 60.863 52.174 0.00 0.00 36.03 4.79
1702 1796 2.417719 CTGCTATTATCTTGGGTCGGC 58.582 52.381 0.00 0.00 0.00 5.54
1703 1797 2.037772 CTGCTATTATCTTGGGTCGGCT 59.962 50.000 0.00 0.00 0.00 5.52
1704 1798 2.037251 TGCTATTATCTTGGGTCGGCTC 59.963 50.000 0.00 0.00 0.00 4.70
1716 1813 1.694696 GGTCGGCTCCTCCTCATATTT 59.305 52.381 0.00 0.00 0.00 1.40
1723 1820 4.504689 GGCTCCTCCTCATATTTCTTCCTG 60.505 50.000 0.00 0.00 0.00 3.86
1735 1832 1.942776 TCTTCCTGCCAGTCTCATGA 58.057 50.000 0.00 0.00 0.00 3.07
1801 1898 6.254589 TGCAACAAAATTAACACTCCTTTTCG 59.745 34.615 0.00 0.00 0.00 3.46
1998 2095 0.036671 GGGGGAAGTACAAGACCGTG 60.037 60.000 0.00 0.00 0.00 4.94
2112 2209 8.539544 TCATCATGTGTGATTTCTTAACTCCTA 58.460 33.333 0.00 0.00 42.37 2.94
2454 2551 3.565307 TGTTGCTTGGTCTCTTGGATTT 58.435 40.909 0.00 0.00 0.00 2.17
2640 2737 8.479689 TCAATATTGTTTGATGGAAATGATGCT 58.520 29.630 14.97 0.00 30.82 3.79
2719 2816 6.891361 TGTTTATCACATGATGGAATCCAAGT 59.109 34.615 5.89 0.00 44.73 3.16
2728 2825 1.210478 TGGAATCCAAGTCTGCTAGCC 59.790 52.381 13.29 0.00 0.00 3.93
2779 2876 9.628746 TGTCTGTTTTAACAAAAGAAACTTACC 57.371 29.630 0.00 0.00 38.66 2.85
2863 2960 8.522003 TCCCCCTTAACATTATTTTACGAAAAC 58.478 33.333 0.00 0.00 32.37 2.43
3049 3234 4.761235 TGCCCTTATATCGTACTCTTCG 57.239 45.455 0.00 0.00 0.00 3.79
3065 3250 1.923006 TTCGTCAACCACAACCCCCA 61.923 55.000 0.00 0.00 0.00 4.96
3259 3605 1.422402 TGTTACCCTCCTTTCCACACC 59.578 52.381 0.00 0.00 0.00 4.16
3346 3702 6.741992 TGCTTTAGTTACAATCATGGACTG 57.258 37.500 0.00 0.00 31.90 3.51
3377 3733 7.333921 TGAAGATTGTGTTTTGCAATTTGAGTT 59.666 29.630 0.00 0.00 36.77 3.01
3381 3737 9.584839 GATTGTGTTTTGCAATTTGAGTTATTC 57.415 29.630 0.00 0.00 36.77 1.75
3425 3841 9.793252 AATATGTATTCTGCACTTTGACATTTC 57.207 29.630 0.00 0.00 0.00 2.17
3429 3845 7.809331 TGTATTCTGCACTTTGACATTTCAATC 59.191 33.333 0.00 0.00 41.50 2.67
3545 3961 3.251484 TCAGGTGGAGGAAGTGAAGATT 58.749 45.455 0.00 0.00 0.00 2.40
3608 4024 0.675083 CAGCTTCCATGTGCCAAACA 59.325 50.000 0.00 0.00 44.79 2.83
3747 4163 1.283029 AGGACACCATTGTGATCCCAG 59.717 52.381 3.55 0.00 45.76 4.45
3749 4165 2.238646 GGACACCATTGTGATCCCAGTA 59.761 50.000 3.55 0.00 45.76 2.74
3827 4243 2.758737 CGGTTCCTAGCGGTCCCT 60.759 66.667 0.00 0.00 41.36 4.20
4043 4459 0.537143 TCCTTGCAATGTCGCTTGGT 60.537 50.000 0.00 0.00 0.00 3.67
4046 4462 2.584791 CTTGCAATGTCGCTTGGTTAC 58.415 47.619 0.00 0.00 0.00 2.50
4202 4618 0.653636 ACTTTGTTGTGTACACGGCG 59.346 50.000 20.61 4.80 36.21 6.46
4208 4624 4.112256 GTGTACACGGCGTTCGCG 62.112 66.667 11.19 0.00 43.89 5.87
4248 4664 1.215647 GTCGAGCTCCGGTGAACAT 59.784 57.895 8.47 0.00 39.14 2.71
4278 4711 5.471556 TGTCGGTTATCCTCTTTGTTGTA 57.528 39.130 0.00 0.00 0.00 2.41
4283 4716 6.704493 TCGGTTATCCTCTTTGTTGTATATGC 59.296 38.462 0.00 0.00 0.00 3.14
4306 4739 3.624410 ACCGTCTACAAAACCACTTTGAC 59.376 43.478 4.32 0.00 46.35 3.18
4333 4767 7.504924 AATTAAATATCGCCGAAATTCCTGA 57.495 32.000 0.00 0.00 0.00 3.86
4392 4832 5.300286 ACACAAATGAAACAAAGCTAGCTCT 59.700 36.000 19.65 0.00 0.00 4.09
4393 4833 5.628193 CACAAATGAAACAAAGCTAGCTCTG 59.372 40.000 19.65 18.02 0.00 3.35
4394 4834 5.300286 ACAAATGAAACAAAGCTAGCTCTGT 59.700 36.000 18.10 18.10 0.00 3.41
4395 4835 6.183360 ACAAATGAAACAAAGCTAGCTCTGTT 60.183 34.615 27.05 27.05 38.70 3.16
4396 4836 6.396829 AATGAAACAAAGCTAGCTCTGTTT 57.603 33.333 37.20 37.20 46.16 2.83
4397 4837 7.510549 AATGAAACAAAGCTAGCTCTGTTTA 57.489 32.000 36.83 27.09 44.31 2.01
4398 4838 6.300354 TGAAACAAAGCTAGCTCTGTTTAC 57.700 37.500 36.83 29.69 44.31 2.01
4399 4839 5.820423 TGAAACAAAGCTAGCTCTGTTTACA 59.180 36.000 36.83 31.22 44.31 2.41
4400 4840 5.931441 AACAAAGCTAGCTCTGTTTACAG 57.069 39.130 27.05 6.00 45.08 2.74
4401 4841 3.748568 ACAAAGCTAGCTCTGTTTACAGC 59.251 43.478 18.10 0.00 43.46 4.40
4402 4842 7.409465 AAACAAAGCTAGCTCTGTTTACAGCT 61.409 38.462 36.27 19.20 43.03 4.24
4403 4843 3.244033 AGCTAGCTCTGTTTACAGCTG 57.756 47.619 12.68 13.48 45.81 4.24
4404 4844 1.663135 GCTAGCTCTGTTTACAGCTGC 59.337 52.381 15.27 15.05 45.81 5.25
4405 4845 1.923204 CTAGCTCTGTTTACAGCTGCG 59.077 52.381 15.27 0.00 45.81 5.18
4406 4846 0.034059 AGCTCTGTTTACAGCTGCGT 59.966 50.000 15.27 0.00 44.58 5.24
4407 4847 1.272490 AGCTCTGTTTACAGCTGCGTA 59.728 47.619 15.27 0.00 44.58 4.42
4408 4848 1.390463 GCTCTGTTTACAGCTGCGTAC 59.610 52.381 15.27 9.61 43.46 3.67
4409 4849 1.993370 CTCTGTTTACAGCTGCGTACC 59.007 52.381 15.27 0.00 43.46 3.34
4410 4850 1.076332 CTGTTTACAGCTGCGTACCC 58.924 55.000 15.27 0.00 37.15 3.69
4411 4851 0.682852 TGTTTACAGCTGCGTACCCT 59.317 50.000 15.27 0.00 0.00 4.34
4412 4852 1.337447 TGTTTACAGCTGCGTACCCTC 60.337 52.381 15.27 0.00 0.00 4.30
4413 4853 1.067071 GTTTACAGCTGCGTACCCTCT 60.067 52.381 15.27 0.00 0.00 3.69
4414 4854 1.263356 TTACAGCTGCGTACCCTCTT 58.737 50.000 15.27 0.00 0.00 2.85
4415 4855 1.263356 TACAGCTGCGTACCCTCTTT 58.737 50.000 15.27 0.00 0.00 2.52
4416 4856 0.320771 ACAGCTGCGTACCCTCTTTG 60.321 55.000 15.27 0.00 0.00 2.77
4417 4857 0.320771 CAGCTGCGTACCCTCTTTGT 60.321 55.000 0.00 0.00 0.00 2.83
4418 4858 0.396811 AGCTGCGTACCCTCTTTGTT 59.603 50.000 0.00 0.00 0.00 2.83
4419 4859 0.796927 GCTGCGTACCCTCTTTGTTC 59.203 55.000 0.00 0.00 0.00 3.18
4420 4860 1.608283 GCTGCGTACCCTCTTTGTTCT 60.608 52.381 0.00 0.00 0.00 3.01
4421 4861 2.767505 CTGCGTACCCTCTTTGTTCTT 58.232 47.619 0.00 0.00 0.00 2.52
4422 4862 3.139077 CTGCGTACCCTCTTTGTTCTTT 58.861 45.455 0.00 0.00 0.00 2.52
4423 4863 3.547746 TGCGTACCCTCTTTGTTCTTTT 58.452 40.909 0.00 0.00 0.00 2.27
4424 4864 3.949113 TGCGTACCCTCTTTGTTCTTTTT 59.051 39.130 0.00 0.00 0.00 1.94
4425 4865 5.124645 TGCGTACCCTCTTTGTTCTTTTTA 58.875 37.500 0.00 0.00 0.00 1.52
4426 4866 5.766174 TGCGTACCCTCTTTGTTCTTTTTAT 59.234 36.000 0.00 0.00 0.00 1.40
4427 4867 6.072893 TGCGTACCCTCTTTGTTCTTTTTATC 60.073 38.462 0.00 0.00 0.00 1.75
4428 4868 6.148976 GCGTACCCTCTTTGTTCTTTTTATCT 59.851 38.462 0.00 0.00 0.00 1.98
4429 4869 7.519002 CGTACCCTCTTTGTTCTTTTTATCTG 58.481 38.462 0.00 0.00 0.00 2.90
4430 4870 7.386848 CGTACCCTCTTTGTTCTTTTTATCTGA 59.613 37.037 0.00 0.00 0.00 3.27
4431 4871 7.751768 ACCCTCTTTGTTCTTTTTATCTGAG 57.248 36.000 0.00 0.00 0.00 3.35
4432 4872 7.290813 ACCCTCTTTGTTCTTTTTATCTGAGT 58.709 34.615 0.00 0.00 0.00 3.41
4433 4873 8.437575 ACCCTCTTTGTTCTTTTTATCTGAGTA 58.562 33.333 0.00 0.00 0.00 2.59
4434 4874 9.284968 CCCTCTTTGTTCTTTTTATCTGAGTAA 57.715 33.333 0.00 0.00 0.00 2.24
4437 4877 9.847224 TCTTTGTTCTTTTTATCTGAGTAAGGT 57.153 29.630 0.00 0.00 0.00 3.50
4438 4878 9.884465 CTTTGTTCTTTTTATCTGAGTAAGGTG 57.116 33.333 0.00 0.00 0.00 4.00
4439 4879 8.974060 TTGTTCTTTTTATCTGAGTAAGGTGT 57.026 30.769 0.00 0.00 0.00 4.16
4441 4881 9.706691 TGTTCTTTTTATCTGAGTAAGGTGTAG 57.293 33.333 0.00 0.00 0.00 2.74
4442 4882 8.657729 GTTCTTTTTATCTGAGTAAGGTGTAGC 58.342 37.037 0.00 0.00 0.00 3.58
4443 4883 7.903145 TCTTTTTATCTGAGTAAGGTGTAGCA 58.097 34.615 0.00 0.00 0.00 3.49
4444 4884 8.372459 TCTTTTTATCTGAGTAAGGTGTAGCAA 58.628 33.333 0.00 0.00 0.00 3.91
4445 4885 8.911918 TTTTTATCTGAGTAAGGTGTAGCAAA 57.088 30.769 0.00 0.00 0.00 3.68
4446 4886 9.515226 TTTTTATCTGAGTAAGGTGTAGCAAAT 57.485 29.630 0.00 0.00 0.00 2.32
4468 4908 6.688073 ATGGTACCCCAGAATAAGTATGAG 57.312 41.667 10.07 0.00 46.15 2.90
4480 4920 1.668419 AGTATGAGCCGTCCATTTGC 58.332 50.000 0.00 0.00 0.00 3.68
4521 4961 1.183549 GACCCGTACTCCATGACAGT 58.816 55.000 0.00 0.00 0.00 3.55
4536 4976 5.411781 CATGACAGTCTTAAGGAGTACCAC 58.588 45.833 1.85 0.00 38.94 4.16
4550 4990 5.892686 AGGAGTACCACCTCTAGAAATGTAC 59.107 44.000 11.00 11.00 38.94 2.90
4551 4991 5.655532 GGAGTACCACCTCTAGAAATGTACA 59.344 44.000 17.07 0.00 35.97 2.90
4670 5110 0.613260 AACGCTACTCATGAGGGCAA 59.387 50.000 29.10 13.56 33.27 4.52
4791 5232 2.574018 CGGTGGACTGGACTGAGCA 61.574 63.158 0.00 0.00 0.00 4.26
4835 5276 1.741732 GCCATGCACGTTCATCTCTCT 60.742 52.381 0.00 0.00 0.00 3.10
4837 5278 1.931841 CATGCACGTTCATCTCTCTGG 59.068 52.381 0.00 0.00 0.00 3.86
4935 5379 6.256975 GCAACCACACAACGATATACTAATCA 59.743 38.462 0.00 0.00 0.00 2.57
4936 5380 7.042051 GCAACCACACAACGATATACTAATCAT 60.042 37.037 0.00 0.00 0.00 2.45
4937 5381 9.471084 CAACCACACAACGATATACTAATCATA 57.529 33.333 0.00 0.00 0.00 2.15
4959 5403 3.673746 ATGTATTCCGTTTGCACATCG 57.326 42.857 0.00 0.00 0.00 3.84
4960 5404 1.735018 TGTATTCCGTTTGCACATCGG 59.265 47.619 14.64 14.64 44.76 4.18
4977 5421 1.737816 GGTGATGGCCATGTGATGC 59.262 57.895 26.56 8.07 0.00 3.91
4992 5436 3.370672 TGTGATGCATACACACGTTCATC 59.629 43.478 20.82 0.00 42.20 2.92
5060 5504 1.464355 GCGGCGACAGATCTATACTCG 60.464 57.143 12.98 0.97 0.00 4.18
5061 5505 1.799403 CGGCGACAGATCTATACTCGT 59.201 52.381 0.00 0.00 0.00 4.18
5062 5506 2.223611 CGGCGACAGATCTATACTCGTT 59.776 50.000 0.00 0.00 0.00 3.85
5063 5507 3.556513 GGCGACAGATCTATACTCGTTG 58.443 50.000 0.00 0.00 0.00 4.10
5064 5508 2.974536 GCGACAGATCTATACTCGTTGC 59.025 50.000 0.00 0.00 0.00 4.17
5099 5544 1.420514 GATTAGGCCCAGTTCTACCCC 59.579 57.143 0.00 0.00 0.00 4.95
5100 5545 0.622446 TTAGGCCCAGTTCTACCCCC 60.622 60.000 0.00 0.00 0.00 5.40
5101 5546 1.828602 TAGGCCCAGTTCTACCCCCA 61.829 60.000 0.00 0.00 0.00 4.96
5102 5547 2.235761 GGCCCAGTTCTACCCCCAA 61.236 63.158 0.00 0.00 0.00 4.12
5185 5630 3.007074 TCCAACGCACTAAATGGAGTACA 59.993 43.478 0.00 0.00 37.05 2.90
5207 5652 3.323751 GGGTACCGTAAAAGAGCTCAA 57.676 47.619 17.77 0.00 40.86 3.02
5208 5653 3.870274 GGGTACCGTAAAAGAGCTCAAT 58.130 45.455 17.77 0.59 40.86 2.57
5209 5654 4.259356 GGGTACCGTAAAAGAGCTCAATT 58.741 43.478 17.77 12.54 40.86 2.32
5210 5655 4.094442 GGGTACCGTAAAAGAGCTCAATTG 59.906 45.833 17.77 0.00 40.86 2.32
5211 5656 4.933400 GGTACCGTAAAAGAGCTCAATTGA 59.067 41.667 17.77 8.12 0.00 2.57
5212 5657 5.410439 GGTACCGTAAAAGAGCTCAATTGAA 59.590 40.000 17.77 0.43 0.00 2.69
5213 5658 5.358298 ACCGTAAAAGAGCTCAATTGAAC 57.642 39.130 17.77 5.05 0.00 3.18
5214 5659 4.819630 ACCGTAAAAGAGCTCAATTGAACA 59.180 37.500 17.77 0.00 0.00 3.18
5215 5660 5.473504 ACCGTAAAAGAGCTCAATTGAACAT 59.526 36.000 17.77 0.00 0.00 2.71
5216 5661 6.016276 ACCGTAAAAGAGCTCAATTGAACATT 60.016 34.615 17.77 1.88 0.00 2.71
5217 5662 6.306356 CCGTAAAAGAGCTCAATTGAACATTG 59.694 38.462 17.77 0.00 0.00 2.82
5218 5663 7.077605 CGTAAAAGAGCTCAATTGAACATTGA 58.922 34.615 17.77 0.00 36.67 2.57
5219 5664 7.059945 CGTAAAAGAGCTCAATTGAACATTGAC 59.940 37.037 17.77 4.93 34.66 3.18
5220 5665 6.645790 AAAGAGCTCAATTGAACATTGACT 57.354 33.333 17.77 0.00 34.66 3.41
5221 5666 5.876612 AGAGCTCAATTGAACATTGACTC 57.123 39.130 17.77 8.29 36.97 3.36
5222 5667 5.311265 AGAGCTCAATTGAACATTGACTCA 58.689 37.500 17.77 0.00 37.91 3.41
5223 5668 5.766670 AGAGCTCAATTGAACATTGACTCAA 59.233 36.000 17.77 7.90 37.91 3.02
5224 5669 6.433404 AGAGCTCAATTGAACATTGACTCAAT 59.567 34.615 17.77 10.81 42.67 2.57
5233 5678 2.719739 CATTGACTCAATGGCAGGAGT 58.280 47.619 20.52 20.52 45.03 3.85
5234 5679 2.189594 TTGACTCAATGGCAGGAGTG 57.810 50.000 24.05 6.62 44.03 3.51
5235 5680 5.277147 CATTGACTCAATGGCAGGAGTGC 62.277 52.174 24.05 16.71 45.03 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.113322 TCACTTGCTATACGAATGACGC 58.887 45.455 0.00 0.00 46.94 5.19
2 3 6.209361 TCATCTCACTTGCTATACGAATGAC 58.791 40.000 0.00 0.00 0.00 3.06
3 4 6.391227 TCATCTCACTTGCTATACGAATGA 57.609 37.500 0.00 0.00 0.00 2.57
4 5 6.644181 ACATCATCTCACTTGCTATACGAATG 59.356 38.462 0.00 0.00 0.00 2.67
5 6 6.753180 ACATCATCTCACTTGCTATACGAAT 58.247 36.000 0.00 0.00 0.00 3.34
6 7 6.149129 ACATCATCTCACTTGCTATACGAA 57.851 37.500 0.00 0.00 0.00 3.85
7 8 5.774498 ACATCATCTCACTTGCTATACGA 57.226 39.130 0.00 0.00 0.00 3.43
8 9 6.074088 GGAAACATCATCTCACTTGCTATACG 60.074 42.308 0.00 0.00 0.00 3.06
9 10 6.074088 CGGAAACATCATCTCACTTGCTATAC 60.074 42.308 0.00 0.00 0.00 1.47
10 11 5.985530 CGGAAACATCATCTCACTTGCTATA 59.014 40.000 0.00 0.00 0.00 1.31
11 12 4.813161 CGGAAACATCATCTCACTTGCTAT 59.187 41.667 0.00 0.00 0.00 2.97
12 13 4.183865 CGGAAACATCATCTCACTTGCTA 58.816 43.478 0.00 0.00 0.00 3.49
13 14 3.005554 CGGAAACATCATCTCACTTGCT 58.994 45.455 0.00 0.00 0.00 3.91
14 15 2.096496 CCGGAAACATCATCTCACTTGC 59.904 50.000 0.00 0.00 0.00 4.01
15 16 2.096496 GCCGGAAACATCATCTCACTTG 59.904 50.000 5.05 0.00 0.00 3.16
16 17 2.026822 AGCCGGAAACATCATCTCACTT 60.027 45.455 5.05 0.00 0.00 3.16
17 18 1.556911 AGCCGGAAACATCATCTCACT 59.443 47.619 5.05 0.00 0.00 3.41
18 19 1.936547 GAGCCGGAAACATCATCTCAC 59.063 52.381 5.05 0.00 0.00 3.51
19 20 1.134401 GGAGCCGGAAACATCATCTCA 60.134 52.381 5.05 0.00 0.00 3.27
20 21 1.587547 GGAGCCGGAAACATCATCTC 58.412 55.000 5.05 0.00 0.00 2.75
21 22 0.181350 GGGAGCCGGAAACATCATCT 59.819 55.000 5.05 0.00 0.00 2.90
22 23 0.181350 AGGGAGCCGGAAACATCATC 59.819 55.000 5.05 0.00 0.00 2.92
23 24 0.625849 AAGGGAGCCGGAAACATCAT 59.374 50.000 5.05 0.00 0.00 2.45
24 25 0.035439 GAAGGGAGCCGGAAACATCA 60.035 55.000 5.05 0.00 0.00 3.07
25 26 0.253327 AGAAGGGAGCCGGAAACATC 59.747 55.000 5.05 0.00 0.00 3.06
26 27 1.209747 GTAGAAGGGAGCCGGAAACAT 59.790 52.381 5.05 0.00 0.00 2.71
27 28 0.611714 GTAGAAGGGAGCCGGAAACA 59.388 55.000 5.05 0.00 0.00 2.83
28 29 0.611714 TGTAGAAGGGAGCCGGAAAC 59.388 55.000 5.05 0.00 0.00 2.78
29 30 1.580059 ATGTAGAAGGGAGCCGGAAA 58.420 50.000 5.05 0.00 0.00 3.13
30 31 2.317040 CTATGTAGAAGGGAGCCGGAA 58.683 52.381 5.05 0.00 0.00 4.30
31 32 1.996798 CTATGTAGAAGGGAGCCGGA 58.003 55.000 5.05 0.00 0.00 5.14
32 33 0.318762 GCTATGTAGAAGGGAGCCGG 59.681 60.000 0.00 0.00 0.00 6.13
33 34 0.039074 CGCTATGTAGAAGGGAGCCG 60.039 60.000 0.00 0.00 0.00 5.52
34 35 0.318762 CCGCTATGTAGAAGGGAGCC 59.681 60.000 0.00 0.00 0.00 4.70
35 36 0.318762 CCCGCTATGTAGAAGGGAGC 59.681 60.000 12.79 0.00 42.03 4.70
36 37 0.318762 GCCCGCTATGTAGAAGGGAG 59.681 60.000 18.97 1.72 42.03 4.30
37 38 0.397957 TGCCCGCTATGTAGAAGGGA 60.398 55.000 18.97 5.81 42.03 4.20
38 39 0.034059 CTGCCCGCTATGTAGAAGGG 59.966 60.000 13.44 13.44 42.22 3.95
39 40 1.000283 CTCTGCCCGCTATGTAGAAGG 60.000 57.143 0.00 0.00 0.00 3.46
40 41 1.000283 CCTCTGCCCGCTATGTAGAAG 60.000 57.143 0.00 0.00 0.00 2.85
41 42 1.040646 CCTCTGCCCGCTATGTAGAA 58.959 55.000 0.00 0.00 0.00 2.10
42 43 1.464376 GCCTCTGCCCGCTATGTAGA 61.464 60.000 0.00 0.00 0.00 2.59
43 44 1.005630 GCCTCTGCCCGCTATGTAG 60.006 63.158 0.00 0.00 0.00 2.74
44 45 3.138625 GCCTCTGCCCGCTATGTA 58.861 61.111 0.00 0.00 0.00 2.29
54 55 2.659428 AGGATAAATTGTGGCCTCTGC 58.341 47.619 3.32 0.00 0.00 4.26
55 56 4.818546 CACTAGGATAAATTGTGGCCTCTG 59.181 45.833 3.32 0.00 0.00 3.35
56 57 4.687219 GCACTAGGATAAATTGTGGCCTCT 60.687 45.833 3.32 0.00 0.00 3.69
57 58 3.565902 GCACTAGGATAAATTGTGGCCTC 59.434 47.826 3.32 0.00 0.00 4.70
58 59 3.555966 GCACTAGGATAAATTGTGGCCT 58.444 45.455 3.32 0.00 0.00 5.19
59 60 2.290641 CGCACTAGGATAAATTGTGGCC 59.709 50.000 0.00 0.00 0.00 5.36
60 61 2.287009 GCGCACTAGGATAAATTGTGGC 60.287 50.000 0.30 0.00 0.00 5.01
61 62 3.206150 AGCGCACTAGGATAAATTGTGG 58.794 45.455 11.47 0.00 0.00 4.17
62 63 4.591202 CAAGCGCACTAGGATAAATTGTG 58.409 43.478 11.47 0.00 0.00 3.33
63 64 3.065371 GCAAGCGCACTAGGATAAATTGT 59.935 43.478 11.47 0.00 38.36 2.71
64 65 3.548818 GGCAAGCGCACTAGGATAAATTG 60.549 47.826 11.47 1.22 41.24 2.32
65 66 2.618709 GGCAAGCGCACTAGGATAAATT 59.381 45.455 11.47 0.00 41.24 1.82
66 67 2.222027 GGCAAGCGCACTAGGATAAAT 58.778 47.619 11.47 0.00 41.24 1.40
67 68 1.065782 TGGCAAGCGCACTAGGATAAA 60.066 47.619 11.47 0.00 41.24 1.40
68 69 0.539518 TGGCAAGCGCACTAGGATAA 59.460 50.000 11.47 0.00 41.24 1.75
69 70 0.104855 CTGGCAAGCGCACTAGGATA 59.895 55.000 11.47 0.00 41.24 2.59
70 71 1.153289 CTGGCAAGCGCACTAGGAT 60.153 57.895 11.47 0.00 41.24 3.24
71 72 2.265739 CTGGCAAGCGCACTAGGA 59.734 61.111 11.47 0.00 41.24 2.94
72 73 3.503363 GCTGGCAAGCGCACTAGG 61.503 66.667 11.47 0.00 40.27 3.02
85 86 1.742880 CGGATGGCGGATATGCTGG 60.743 63.158 0.00 0.00 34.52 4.85
86 87 0.320683 TTCGGATGGCGGATATGCTG 60.321 55.000 0.00 0.00 34.52 4.41
87 88 0.615331 ATTCGGATGGCGGATATGCT 59.385 50.000 0.00 0.00 34.52 3.79
88 89 1.009829 GATTCGGATGGCGGATATGC 58.990 55.000 0.00 0.00 0.00 3.14
89 90 1.208052 AGGATTCGGATGGCGGATATG 59.792 52.381 0.00 0.00 0.00 1.78
90 91 1.573108 AGGATTCGGATGGCGGATAT 58.427 50.000 0.00 0.00 0.00 1.63
91 92 1.275291 GAAGGATTCGGATGGCGGATA 59.725 52.381 0.00 0.00 34.17 2.59
92 93 0.035458 GAAGGATTCGGATGGCGGAT 59.965 55.000 0.00 0.00 34.17 4.18
93 94 1.445942 GAAGGATTCGGATGGCGGA 59.554 57.895 0.00 0.00 34.17 5.54
94 95 4.049393 GAAGGATTCGGATGGCGG 57.951 61.111 0.00 0.00 34.17 6.13
106 107 4.335416 GTGATTGACAATCCAAGGAAGGA 58.665 43.478 22.44 1.00 43.01 3.36
107 108 3.127548 CGTGATTGACAATCCAAGGAAGG 59.872 47.826 22.44 7.31 37.09 3.46
108 109 3.426695 GCGTGATTGACAATCCAAGGAAG 60.427 47.826 22.44 9.19 37.09 3.46
109 110 2.487762 GCGTGATTGACAATCCAAGGAA 59.512 45.455 22.44 3.02 37.09 3.36
110 111 2.083774 GCGTGATTGACAATCCAAGGA 58.916 47.619 22.44 3.69 37.09 3.36
111 112 1.811965 TGCGTGATTGACAATCCAAGG 59.188 47.619 22.44 12.91 37.09 3.61
112 113 3.557577 TTGCGTGATTGACAATCCAAG 57.442 42.857 22.44 15.12 37.09 3.61
113 114 3.567585 TCTTTGCGTGATTGACAATCCAA 59.432 39.130 22.44 16.67 37.09 3.53
114 115 3.145286 TCTTTGCGTGATTGACAATCCA 58.855 40.909 22.44 12.29 37.09 3.41
115 116 3.829886 TCTTTGCGTGATTGACAATCC 57.170 42.857 22.44 13.90 37.09 3.01
116 117 6.400303 CCAAATTCTTTGCGTGATTGACAATC 60.400 38.462 19.39 19.39 39.31 2.67
117 118 5.406175 CCAAATTCTTTGCGTGATTGACAAT 59.594 36.000 0.00 0.00 39.31 2.71
118 119 4.744137 CCAAATTCTTTGCGTGATTGACAA 59.256 37.500 0.00 0.00 39.31 3.18
119 120 4.297510 CCAAATTCTTTGCGTGATTGACA 58.702 39.130 0.00 0.00 39.31 3.58
120 121 3.121778 GCCAAATTCTTTGCGTGATTGAC 59.878 43.478 0.00 0.00 39.31 3.18
121 122 3.316283 GCCAAATTCTTTGCGTGATTGA 58.684 40.909 0.00 0.00 39.31 2.57
122 123 2.412770 GGCCAAATTCTTTGCGTGATTG 59.587 45.455 0.00 0.00 39.31 2.67
123 124 2.299867 AGGCCAAATTCTTTGCGTGATT 59.700 40.909 5.01 0.00 39.31 2.57
124 125 1.895131 AGGCCAAATTCTTTGCGTGAT 59.105 42.857 5.01 0.00 39.31 3.06
125 126 1.327303 AGGCCAAATTCTTTGCGTGA 58.673 45.000 5.01 0.00 39.31 4.35
126 127 2.153366 AAGGCCAAATTCTTTGCGTG 57.847 45.000 5.01 0.00 39.31 5.34
127 128 2.482864 CAAAGGCCAAATTCTTTGCGT 58.517 42.857 5.01 0.00 41.88 5.24
128 129 1.799994 CCAAAGGCCAAATTCTTTGCG 59.200 47.619 5.01 0.00 44.87 4.85
129 130 2.153645 CCCAAAGGCCAAATTCTTTGC 58.846 47.619 5.01 0.00 44.87 3.68
130 131 3.767902 TCCCAAAGGCCAAATTCTTTG 57.232 42.857 5.01 5.65 45.44 2.77
131 132 3.909364 TCATCCCAAAGGCCAAATTCTTT 59.091 39.130 5.01 0.00 33.95 2.52
132 133 3.516700 CTCATCCCAAAGGCCAAATTCTT 59.483 43.478 5.01 0.00 0.00 2.52
133 134 3.102204 CTCATCCCAAAGGCCAAATTCT 58.898 45.455 5.01 0.00 0.00 2.40
134 135 3.099141 TCTCATCCCAAAGGCCAAATTC 58.901 45.455 5.01 0.00 0.00 2.17
135 136 3.188880 TCTCATCCCAAAGGCCAAATT 57.811 42.857 5.01 0.00 0.00 1.82
136 137 2.925966 TCTCATCCCAAAGGCCAAAT 57.074 45.000 5.01 0.00 0.00 2.32
137 138 2.528564 CTTCTCATCCCAAAGGCCAAA 58.471 47.619 5.01 0.00 0.00 3.28
138 139 1.892329 GCTTCTCATCCCAAAGGCCAA 60.892 52.381 5.01 0.00 0.00 4.52
139 140 0.323725 GCTTCTCATCCCAAAGGCCA 60.324 55.000 5.01 0.00 0.00 5.36
140 141 1.379642 CGCTTCTCATCCCAAAGGCC 61.380 60.000 0.00 0.00 0.00 5.19
141 142 0.392998 TCGCTTCTCATCCCAAAGGC 60.393 55.000 0.00 0.00 0.00 4.35
142 143 2.113860 TTCGCTTCTCATCCCAAAGG 57.886 50.000 0.00 0.00 0.00 3.11
143 144 2.286294 CGATTCGCTTCTCATCCCAAAG 59.714 50.000 0.00 0.00 0.00 2.77
144 145 2.279741 CGATTCGCTTCTCATCCCAAA 58.720 47.619 0.00 0.00 0.00 3.28
145 146 1.207089 ACGATTCGCTTCTCATCCCAA 59.793 47.619 5.86 0.00 0.00 4.12
146 147 0.824109 ACGATTCGCTTCTCATCCCA 59.176 50.000 5.86 0.00 0.00 4.37
147 148 1.212616 CACGATTCGCTTCTCATCCC 58.787 55.000 5.86 0.00 0.00 3.85
148 149 0.579156 GCACGATTCGCTTCTCATCC 59.421 55.000 5.86 0.00 0.00 3.51
149 150 0.228238 CGCACGATTCGCTTCTCATC 59.772 55.000 5.86 0.00 0.00 2.92
150 151 1.148157 CCGCACGATTCGCTTCTCAT 61.148 55.000 5.86 0.00 0.00 2.90
151 152 1.805539 CCGCACGATTCGCTTCTCA 60.806 57.895 5.86 0.00 0.00 3.27
152 153 2.998667 CCGCACGATTCGCTTCTC 59.001 61.111 5.86 0.00 0.00 2.87
153 154 3.188786 GCCGCACGATTCGCTTCT 61.189 61.111 5.86 0.00 0.00 2.85
154 155 3.487202 TGCCGCACGATTCGCTTC 61.487 61.111 5.86 0.00 0.00 3.86
155 156 3.788766 GTGCCGCACGATTCGCTT 61.789 61.111 7.96 0.00 0.00 4.68
157 158 3.864686 ATGTGCCGCACGATTCGC 61.865 61.111 18.41 0.00 37.14 4.70
158 159 2.021793 CATGTGCCGCACGATTCG 59.978 61.111 18.41 4.14 37.14 3.34
159 160 1.349627 CTCATGTGCCGCACGATTC 59.650 57.895 18.41 0.00 37.14 2.52
160 161 2.753966 GCTCATGTGCCGCACGATT 61.754 57.895 18.41 3.46 37.14 3.34
161 162 2.296814 TAGCTCATGTGCCGCACGAT 62.297 55.000 18.41 10.23 37.14 3.73
162 163 2.889154 CTAGCTCATGTGCCGCACGA 62.889 60.000 18.41 9.63 37.14 4.35
163 164 2.509111 TAGCTCATGTGCCGCACG 60.509 61.111 18.41 5.58 37.14 5.34
164 165 2.817423 GCTAGCTCATGTGCCGCAC 61.817 63.158 16.93 16.93 32.54 5.34
165 166 2.512286 GCTAGCTCATGTGCCGCA 60.512 61.111 20.21 0.00 32.54 5.69
166 167 2.512286 TGCTAGCTCATGTGCCGC 60.512 61.111 17.23 17.68 0.00 6.53
167 168 2.520039 CGTGCTAGCTCATGTGCCG 61.520 63.158 17.23 8.33 0.00 5.69
168 169 2.176273 CCGTGCTAGCTCATGTGCC 61.176 63.158 17.23 2.13 0.00 5.01
169 170 1.021390 AACCGTGCTAGCTCATGTGC 61.021 55.000 17.23 11.79 0.00 4.57
170 171 1.442769 AAACCGTGCTAGCTCATGTG 58.557 50.000 17.23 3.93 0.00 3.21
171 172 2.233922 ACTAAACCGTGCTAGCTCATGT 59.766 45.455 17.23 9.50 0.00 3.21
172 173 2.893637 ACTAAACCGTGCTAGCTCATG 58.106 47.619 17.23 8.85 0.00 3.07
173 174 3.611766 AACTAAACCGTGCTAGCTCAT 57.388 42.857 17.23 0.22 0.00 2.90
174 175 3.243941 TGAAACTAAACCGTGCTAGCTCA 60.244 43.478 17.23 3.50 0.00 4.26
175 176 3.323243 TGAAACTAAACCGTGCTAGCTC 58.677 45.455 17.23 11.79 0.00 4.09
176 177 3.244112 ACTGAAACTAAACCGTGCTAGCT 60.244 43.478 17.23 0.00 0.00 3.32
177 178 3.064931 ACTGAAACTAAACCGTGCTAGC 58.935 45.455 8.10 8.10 0.00 3.42
178 179 6.963049 ATTACTGAAACTAAACCGTGCTAG 57.037 37.500 0.00 0.00 0.00 3.42
179 180 8.306038 TCTTATTACTGAAACTAAACCGTGCTA 58.694 33.333 0.00 0.00 0.00 3.49
180 181 7.156673 TCTTATTACTGAAACTAAACCGTGCT 58.843 34.615 0.00 0.00 0.00 4.40
181 182 7.355332 TCTTATTACTGAAACTAAACCGTGC 57.645 36.000 0.00 0.00 0.00 5.34
184 185 9.983804 GGAATTCTTATTACTGAAACTAAACCG 57.016 33.333 5.23 0.00 0.00 4.44
196 197 8.159229 ACCCAACTACAGGAATTCTTATTACT 57.841 34.615 5.23 0.00 35.18 2.24
197 198 7.224167 CGACCCAACTACAGGAATTCTTATTAC 59.776 40.741 5.23 0.00 0.00 1.89
198 199 7.124599 TCGACCCAACTACAGGAATTCTTATTA 59.875 37.037 5.23 0.00 0.00 0.98
199 200 6.070424 TCGACCCAACTACAGGAATTCTTATT 60.070 38.462 5.23 0.00 0.00 1.40
200 201 5.424252 TCGACCCAACTACAGGAATTCTTAT 59.576 40.000 5.23 0.00 0.00 1.73
201 202 4.773674 TCGACCCAACTACAGGAATTCTTA 59.226 41.667 5.23 0.00 0.00 2.10
202 203 3.581332 TCGACCCAACTACAGGAATTCTT 59.419 43.478 5.23 0.00 0.00 2.52
203 204 3.170717 TCGACCCAACTACAGGAATTCT 58.829 45.455 5.23 0.00 0.00 2.40
204 205 3.604875 TCGACCCAACTACAGGAATTC 57.395 47.619 0.00 0.00 0.00 2.17
205 206 3.517901 TCATCGACCCAACTACAGGAATT 59.482 43.478 0.00 0.00 0.00 2.17
206 207 3.104512 TCATCGACCCAACTACAGGAAT 58.895 45.455 0.00 0.00 0.00 3.01
207 208 2.531771 TCATCGACCCAACTACAGGAA 58.468 47.619 0.00 0.00 0.00 3.36
208 209 2.225382 TCATCGACCCAACTACAGGA 57.775 50.000 0.00 0.00 0.00 3.86
209 210 2.618053 GTTCATCGACCCAACTACAGG 58.382 52.381 0.00 0.00 0.00 4.00
210 211 2.028476 TGGTTCATCGACCCAACTACAG 60.028 50.000 0.00 0.00 39.01 2.74
211 212 1.972075 TGGTTCATCGACCCAACTACA 59.028 47.619 0.00 0.00 39.01 2.74
212 213 2.028385 ACTGGTTCATCGACCCAACTAC 60.028 50.000 0.00 0.00 39.01 2.73
213 214 2.253610 ACTGGTTCATCGACCCAACTA 58.746 47.619 0.00 0.00 39.01 2.24
214 215 1.056660 ACTGGTTCATCGACCCAACT 58.943 50.000 0.00 0.00 39.01 3.16
215 216 1.535462 CAACTGGTTCATCGACCCAAC 59.465 52.381 0.00 0.00 39.01 3.77
216 217 1.418264 TCAACTGGTTCATCGACCCAA 59.582 47.619 0.00 0.00 39.01 4.12
217 218 1.001974 CTCAACTGGTTCATCGACCCA 59.998 52.381 0.00 0.00 39.01 4.51
218 219 1.275291 TCTCAACTGGTTCATCGACCC 59.725 52.381 0.00 0.00 39.01 4.46
219 220 2.743636 TCTCAACTGGTTCATCGACC 57.256 50.000 0.00 0.00 40.23 4.79
220 221 4.511826 AGTTTTCTCAACTGGTTCATCGAC 59.488 41.667 0.00 0.00 0.00 4.20
221 222 4.511454 CAGTTTTCTCAACTGGTTCATCGA 59.489 41.667 6.80 0.00 42.83 3.59
222 223 4.511454 TCAGTTTTCTCAACTGGTTCATCG 59.489 41.667 13.42 0.00 45.66 3.84
223 224 6.205464 TCATCAGTTTTCTCAACTGGTTCATC 59.795 38.462 13.42 0.00 45.66 2.92
224 225 6.064060 TCATCAGTTTTCTCAACTGGTTCAT 58.936 36.000 13.42 0.00 45.66 2.57
225 226 5.436175 TCATCAGTTTTCTCAACTGGTTCA 58.564 37.500 13.42 0.00 45.66 3.18
226 227 6.377327 TTCATCAGTTTTCTCAACTGGTTC 57.623 37.500 13.42 0.00 45.66 3.62
227 228 6.547141 TCATTCATCAGTTTTCTCAACTGGTT 59.453 34.615 13.42 1.33 45.66 3.67
228 229 6.064060 TCATTCATCAGTTTTCTCAACTGGT 58.936 36.000 13.42 4.92 45.66 4.00
229 230 6.564709 TCATTCATCAGTTTTCTCAACTGG 57.435 37.500 13.42 0.95 45.66 4.00
238 239 9.685276 TGGTGAAGTATATCATTCATCAGTTTT 57.315 29.630 10.31 0.00 40.65 2.43
239 240 9.685276 TTGGTGAAGTATATCATTCATCAGTTT 57.315 29.630 12.85 0.00 44.82 2.66
240 241 9.685276 TTTGGTGAAGTATATCATTCATCAGTT 57.315 29.630 12.85 0.00 44.82 3.16
241 242 9.685276 TTTTGGTGAAGTATATCATTCATCAGT 57.315 29.630 12.85 0.00 44.82 3.41
265 266 5.766150 TCAAACCAGACGATGTGATTTTT 57.234 34.783 0.00 0.00 0.00 1.94
266 267 5.964958 ATCAAACCAGACGATGTGATTTT 57.035 34.783 0.00 0.00 0.00 1.82
267 268 5.964958 AATCAAACCAGACGATGTGATTT 57.035 34.783 0.00 0.00 33.12 2.17
268 269 5.473162 TCAAATCAAACCAGACGATGTGATT 59.527 36.000 0.00 0.00 37.31 2.57
269 270 5.003160 TCAAATCAAACCAGACGATGTGAT 58.997 37.500 0.00 0.00 30.19 3.06
270 271 4.384940 TCAAATCAAACCAGACGATGTGA 58.615 39.130 0.00 0.00 32.24 3.58
271 272 4.747540 TCAAATCAAACCAGACGATGTG 57.252 40.909 0.00 0.00 0.00 3.21
272 273 5.964958 AATCAAATCAAACCAGACGATGT 57.035 34.783 0.00 0.00 0.00 3.06
273 274 6.088483 CACAAATCAAATCAAACCAGACGATG 59.912 38.462 0.00 0.00 0.00 3.84
274 275 6.151691 CACAAATCAAATCAAACCAGACGAT 58.848 36.000 0.00 0.00 0.00 3.73
275 276 5.507149 CCACAAATCAAATCAAACCAGACGA 60.507 40.000 0.00 0.00 0.00 4.20
276 277 4.681025 CCACAAATCAAATCAAACCAGACG 59.319 41.667 0.00 0.00 0.00 4.18
277 278 5.841810 TCCACAAATCAAATCAAACCAGAC 58.158 37.500 0.00 0.00 0.00 3.51
278 279 5.832595 TCTCCACAAATCAAATCAAACCAGA 59.167 36.000 0.00 0.00 0.00 3.86
279 280 6.088016 TCTCCACAAATCAAATCAAACCAG 57.912 37.500 0.00 0.00 0.00 4.00
280 281 6.267242 TCATCTCCACAAATCAAATCAAACCA 59.733 34.615 0.00 0.00 0.00 3.67
281 282 6.690530 TCATCTCCACAAATCAAATCAAACC 58.309 36.000 0.00 0.00 0.00 3.27
282 283 6.309737 GCTCATCTCCACAAATCAAATCAAAC 59.690 38.462 0.00 0.00 0.00 2.93
283 284 6.209986 AGCTCATCTCCACAAATCAAATCAAA 59.790 34.615 0.00 0.00 0.00 2.69
284 285 5.713389 AGCTCATCTCCACAAATCAAATCAA 59.287 36.000 0.00 0.00 0.00 2.57
285 286 5.258841 AGCTCATCTCCACAAATCAAATCA 58.741 37.500 0.00 0.00 0.00 2.57
286 287 5.831702 AGCTCATCTCCACAAATCAAATC 57.168 39.130 0.00 0.00 0.00 2.17
287 288 7.630082 GCTTAAGCTCATCTCCACAAATCAAAT 60.630 37.037 20.38 0.00 38.21 2.32
288 289 6.349611 GCTTAAGCTCATCTCCACAAATCAAA 60.350 38.462 20.38 0.00 38.21 2.69
289 290 5.124457 GCTTAAGCTCATCTCCACAAATCAA 59.876 40.000 20.38 0.00 38.21 2.57
290 291 4.637534 GCTTAAGCTCATCTCCACAAATCA 59.362 41.667 20.38 0.00 38.21 2.57
291 292 4.036144 GGCTTAAGCTCATCTCCACAAATC 59.964 45.833 25.88 0.66 41.70 2.17
292 293 3.950395 GGCTTAAGCTCATCTCCACAAAT 59.050 43.478 25.88 0.00 41.70 2.32
293 294 3.009473 AGGCTTAAGCTCATCTCCACAAA 59.991 43.478 25.88 0.00 41.70 2.83
294 295 2.573462 AGGCTTAAGCTCATCTCCACAA 59.427 45.455 25.88 0.00 41.70 3.33
295 296 2.093288 CAGGCTTAAGCTCATCTCCACA 60.093 50.000 25.88 0.00 41.70 4.17
296 297 2.169352 TCAGGCTTAAGCTCATCTCCAC 59.831 50.000 25.88 6.92 41.70 4.02
297 298 2.470990 TCAGGCTTAAGCTCATCTCCA 58.529 47.619 25.88 2.10 41.70 3.86
298 299 3.118445 ACTTCAGGCTTAAGCTCATCTCC 60.118 47.826 25.88 8.35 41.70 3.71
299 300 4.135747 ACTTCAGGCTTAAGCTCATCTC 57.864 45.455 25.88 9.07 41.70 2.75
300 301 4.566426 AACTTCAGGCTTAAGCTCATCT 57.434 40.909 25.88 12.33 41.70 2.90
301 302 6.109359 TCTAAACTTCAGGCTTAAGCTCATC 58.891 40.000 25.88 10.17 41.70 2.92
302 303 6.054860 TCTAAACTTCAGGCTTAAGCTCAT 57.945 37.500 25.88 10.57 41.70 2.90
303 304 5.483685 TCTAAACTTCAGGCTTAAGCTCA 57.516 39.130 25.88 8.28 41.70 4.26
304 305 6.803154 TTTCTAAACTTCAGGCTTAAGCTC 57.197 37.500 25.88 16.15 41.70 4.09
305 306 7.068226 TGTTTTTCTAAACTTCAGGCTTAAGCT 59.932 33.333 25.88 10.20 43.25 3.74
306 307 7.200455 TGTTTTTCTAAACTTCAGGCTTAAGC 58.800 34.615 19.53 19.53 43.25 3.09
307 308 9.237846 CTTGTTTTTCTAAACTTCAGGCTTAAG 57.762 33.333 6.89 6.89 43.25 1.85
308 309 8.745590 ACTTGTTTTTCTAAACTTCAGGCTTAA 58.254 29.630 0.00 0.00 43.25 1.85
309 310 8.188139 CACTTGTTTTTCTAAACTTCAGGCTTA 58.812 33.333 0.00 0.00 43.25 3.09
310 311 7.035612 CACTTGTTTTTCTAAACTTCAGGCTT 58.964 34.615 0.00 0.00 43.25 4.35
311 312 6.377146 TCACTTGTTTTTCTAAACTTCAGGCT 59.623 34.615 0.00 0.00 43.25 4.58
312 313 6.560711 TCACTTGTTTTTCTAAACTTCAGGC 58.439 36.000 0.00 0.00 43.25 4.85
313 314 9.023967 CATTCACTTGTTTTTCTAAACTTCAGG 57.976 33.333 0.00 0.00 43.25 3.86
314 315 9.023967 CCATTCACTTGTTTTTCTAAACTTCAG 57.976 33.333 0.00 0.00 43.25 3.02
315 316 7.491048 GCCATTCACTTGTTTTTCTAAACTTCA 59.509 33.333 0.00 0.00 43.25 3.02
316 317 7.305993 CGCCATTCACTTGTTTTTCTAAACTTC 60.306 37.037 0.00 0.00 43.25 3.01
317 318 6.475402 CGCCATTCACTTGTTTTTCTAAACTT 59.525 34.615 0.00 0.00 43.25 2.66
318 319 5.977129 CGCCATTCACTTGTTTTTCTAAACT 59.023 36.000 0.00 0.00 43.25 2.66
319 320 5.332280 GCGCCATTCACTTGTTTTTCTAAAC 60.332 40.000 0.00 0.00 43.17 2.01
330 331 0.387622 CCAACTGCGCCATTCACTTG 60.388 55.000 4.18 0.00 0.00 3.16
340 341 0.940126 CTATCCACATCCAACTGCGC 59.060 55.000 0.00 0.00 0.00 6.09
370 371 6.970703 CATGACTTCATTCGCTGTCTTGCG 62.971 50.000 2.27 2.27 45.08 4.85
432 433 3.488553 CGTCGAAGCTTGTTTTTCCCTTT 60.489 43.478 2.10 0.00 0.00 3.11
433 434 2.032924 CGTCGAAGCTTGTTTTTCCCTT 59.967 45.455 2.10 0.00 0.00 3.95
434 435 1.602377 CGTCGAAGCTTGTTTTTCCCT 59.398 47.619 2.10 0.00 0.00 4.20
435 436 1.600485 TCGTCGAAGCTTGTTTTTCCC 59.400 47.619 2.10 0.00 0.00 3.97
436 437 3.033873 GTTCGTCGAAGCTTGTTTTTCC 58.966 45.455 8.18 0.00 0.00 3.13
437 438 3.719352 CAGTTCGTCGAAGCTTGTTTTTC 59.281 43.478 8.18 0.00 0.00 2.29
438 439 3.486875 CCAGTTCGTCGAAGCTTGTTTTT 60.487 43.478 8.18 0.00 0.00 1.94
453 454 2.046892 CCTGCCCTGTCCAGTTCG 60.047 66.667 0.00 0.00 0.00 3.95
509 510 9.076596 GTGTTGAGCATGTCCTTTATTTATTTC 57.923 33.333 0.00 0.00 0.00 2.17
537 538 0.392060 ACCGGCGACTTTATTCCACC 60.392 55.000 9.30 0.00 0.00 4.61
552 553 0.101399 CTCTGTAGCAGTAGCACCGG 59.899 60.000 0.00 0.00 45.49 5.28
554 555 0.461961 CCCTCTGTAGCAGTAGCACC 59.538 60.000 0.00 0.00 45.49 5.01
568 569 2.700354 GGATCTTCCCTGATTCCCTCT 58.300 52.381 0.00 0.00 0.00 3.69
570 571 1.428869 CGGATCTTCCCTGATTCCCT 58.571 55.000 0.00 0.00 31.13 4.20
571 572 0.398318 CCGGATCTTCCCTGATTCCC 59.602 60.000 0.00 0.00 31.13 3.97
572 573 1.132500 ACCGGATCTTCCCTGATTCC 58.868 55.000 9.46 0.00 31.13 3.01
573 574 3.206964 GAAACCGGATCTTCCCTGATTC 58.793 50.000 9.46 0.00 31.13 2.52
574 575 2.420129 CGAAACCGGATCTTCCCTGATT 60.420 50.000 9.46 0.00 31.13 2.57
575 576 1.139058 CGAAACCGGATCTTCCCTGAT 59.861 52.381 9.46 0.00 31.13 2.90
603 623 5.697178 TCGAGCTCTAAGTATACTACTGCTG 59.303 44.000 19.98 14.38 39.39 4.41
611 631 5.701750 TCATGTCCTCGAGCTCTAAGTATAC 59.298 44.000 12.85 7.54 0.00 1.47
614 634 4.130857 CTCATGTCCTCGAGCTCTAAGTA 58.869 47.826 12.85 0.00 0.00 2.24
615 635 2.948979 CTCATGTCCTCGAGCTCTAAGT 59.051 50.000 12.85 0.00 0.00 2.24
616 636 2.293122 CCTCATGTCCTCGAGCTCTAAG 59.707 54.545 12.85 8.98 0.00 2.18
618 638 1.490910 TCCTCATGTCCTCGAGCTCTA 59.509 52.381 12.85 0.00 0.00 2.43
619 639 0.257328 TCCTCATGTCCTCGAGCTCT 59.743 55.000 12.85 0.00 0.00 4.09
620 640 1.107114 TTCCTCATGTCCTCGAGCTC 58.893 55.000 6.99 2.73 0.00 4.09
621 641 1.561643 TTTCCTCATGTCCTCGAGCT 58.438 50.000 6.99 0.00 0.00 4.09
623 643 3.808466 TCATTTCCTCATGTCCTCGAG 57.192 47.619 5.13 5.13 0.00 4.04
626 646 4.785301 TCCATTCATTTCCTCATGTCCTC 58.215 43.478 0.00 0.00 0.00 3.71
627 647 4.229123 ACTCCATTCATTTCCTCATGTCCT 59.771 41.667 0.00 0.00 0.00 3.85
629 649 5.163581 CCAACTCCATTCATTTCCTCATGTC 60.164 44.000 0.00 0.00 0.00 3.06
630 650 4.708421 CCAACTCCATTCATTTCCTCATGT 59.292 41.667 0.00 0.00 0.00 3.21
631 651 4.098960 CCCAACTCCATTCATTTCCTCATG 59.901 45.833 0.00 0.00 0.00 3.07
632 652 4.264532 ACCCAACTCCATTCATTTCCTCAT 60.265 41.667 0.00 0.00 0.00 2.90
633 653 3.075882 ACCCAACTCCATTCATTTCCTCA 59.924 43.478 0.00 0.00 0.00 3.86
650 672 3.561313 GCTTTCTATTCAGACCCACCCAA 60.561 47.826 0.00 0.00 0.00 4.12
658 680 3.109619 CTCCGTCGCTTTCTATTCAGAC 58.890 50.000 0.00 0.00 0.00 3.51
703 725 2.968330 TTTGCGTGCGCCGTGTTTAC 62.968 55.000 14.16 1.22 41.09 2.01
712 734 0.567509 GCTTCATTATTTGCGTGCGC 59.432 50.000 9.85 9.85 42.35 6.09
716 738 2.819608 ACTGTGGCTTCATTATTTGCGT 59.180 40.909 0.00 0.00 0.00 5.24
717 739 3.492421 ACTGTGGCTTCATTATTTGCG 57.508 42.857 0.00 0.00 0.00 4.85
718 740 3.853671 CGAACTGTGGCTTCATTATTTGC 59.146 43.478 0.00 0.00 0.00 3.68
719 741 5.295431 TCGAACTGTGGCTTCATTATTTG 57.705 39.130 0.00 0.00 0.00 2.32
720 742 5.647658 TCATCGAACTGTGGCTTCATTATTT 59.352 36.000 0.00 0.00 0.00 1.40
721 743 5.185454 TCATCGAACTGTGGCTTCATTATT 58.815 37.500 0.00 0.00 0.00 1.40
722 744 4.769688 TCATCGAACTGTGGCTTCATTAT 58.230 39.130 0.00 0.00 0.00 1.28
723 745 4.081697 TCTCATCGAACTGTGGCTTCATTA 60.082 41.667 0.00 0.00 0.00 1.90
724 746 3.005554 CTCATCGAACTGTGGCTTCATT 58.994 45.455 0.00 0.00 0.00 2.57
725 747 2.234661 TCTCATCGAACTGTGGCTTCAT 59.765 45.455 0.00 0.00 0.00 2.57
726 748 1.618343 TCTCATCGAACTGTGGCTTCA 59.382 47.619 0.00 0.00 0.00 3.02
727 749 2.266554 CTCTCATCGAACTGTGGCTTC 58.733 52.381 0.00 0.00 0.00 3.86
737 759 2.409243 CCGCTCGCTCTCATCGAA 59.591 61.111 0.00 0.00 35.38 3.71
789 811 5.297278 CCTGCCTCAACTACTAGTACTACTG 59.703 48.000 0.00 0.00 0.00 2.74
791 813 5.435291 TCCTGCCTCAACTACTAGTACTAC 58.565 45.833 0.00 0.00 0.00 2.73
792 814 5.427806 TCTCCTGCCTCAACTACTAGTACTA 59.572 44.000 1.89 1.89 0.00 1.82
797 819 3.626930 ACTCTCCTGCCTCAACTACTAG 58.373 50.000 0.00 0.00 0.00 2.57
926 965 2.184167 GCTCCCTCCGACTCTCTCG 61.184 68.421 0.00 0.00 42.54 4.04
1046 1096 2.531601 CGGGTTACCTGGTTGGGGT 61.532 63.158 3.84 0.00 41.11 4.95
1156 1207 8.413229 AGAAGAAGATTTCTGATGTAGTAGAGC 58.587 37.037 0.00 0.00 40.59 4.09
1170 1221 4.906618 TGGTGGTGGTAGAAGAAGATTTC 58.093 43.478 0.00 0.00 0.00 2.17
1193 1250 3.318555 CGACGCGAGAGATGCTGC 61.319 66.667 15.93 0.00 0.00 5.25
1231 1290 1.069823 CCATGAATCCGAGGAGTCTGG 59.930 57.143 18.61 17.72 39.61 3.86
1264 1323 1.523758 AACCGGTGCTGAATCTGAAC 58.476 50.000 8.52 0.00 0.00 3.18
1282 1341 4.447138 ACACCAACCCTATCTGACAAAA 57.553 40.909 0.00 0.00 0.00 2.44
1374 1436 4.495939 CAAGCAAGCGAGCGAGCG 62.496 66.667 8.58 0.00 43.00 5.03
1375 1437 2.018582 CTACAAGCAAGCGAGCGAGC 62.019 60.000 6.67 6.67 40.15 5.03
1376 1438 1.994467 CTACAAGCAAGCGAGCGAG 59.006 57.895 0.00 0.00 40.15 5.03
1451 1518 3.963428 AACAGGAGTGCGAATCTAAGT 57.037 42.857 0.00 0.00 0.00 2.24
1470 1537 0.535780 CAGTGCAGAGGAGTGGCAAA 60.536 55.000 0.00 0.00 39.57 3.68
1616 1710 4.080129 AGACCTGTATGCATGGAGAAACAT 60.080 41.667 10.16 0.00 0.00 2.71
1648 1742 2.955660 TGAAGGGTTTGTGGTTGTGATC 59.044 45.455 0.00 0.00 0.00 2.92
1657 1751 3.715628 CTTCCAGTTGAAGGGTTTGTG 57.284 47.619 0.00 0.00 45.66 3.33
1700 1794 3.650461 AGGAAGAAATATGAGGAGGAGCC 59.350 47.826 0.00 0.00 0.00 4.70
1702 1796 4.504689 GGCAGGAAGAAATATGAGGAGGAG 60.505 50.000 0.00 0.00 0.00 3.69
1703 1797 3.392616 GGCAGGAAGAAATATGAGGAGGA 59.607 47.826 0.00 0.00 0.00 3.71
1704 1798 3.137176 TGGCAGGAAGAAATATGAGGAGG 59.863 47.826 0.00 0.00 0.00 4.30
1716 1813 1.942776 TCATGAGACTGGCAGGAAGA 58.057 50.000 20.34 4.95 0.00 2.87
1723 1820 2.229543 TGTTTGCATTCATGAGACTGGC 59.770 45.455 0.00 0.00 0.00 4.85
1735 1832 6.892658 TCACATAGTAGGTTTGTTTGCATT 57.107 33.333 0.00 0.00 0.00 3.56
1771 1868 6.701400 AGGAGTGTTAATTTTGTTGCAACATC 59.299 34.615 31.48 20.55 38.95 3.06
1801 1898 0.308993 AAGAACTCAAACGCTGCAGC 59.691 50.000 29.12 29.12 37.78 5.25
1998 2095 9.771534 GTAAGATAGAATATTATGGAGATGGCC 57.228 37.037 0.00 0.00 0.00 5.36
2334 2431 4.092116 AGCCTGCTTCTTTTTACTCTGT 57.908 40.909 0.00 0.00 0.00 3.41
2640 2737 3.826524 TGGTGCTTCATTGGTTAAGTCA 58.173 40.909 0.00 0.00 0.00 3.41
2728 2825 9.612620 CAAATTTAAACTAACTTGTCCAGCTAG 57.387 33.333 0.00 0.00 0.00 3.42
2733 2830 8.962679 ACAGACAAATTTAAACTAACTTGTCCA 58.037 29.630 16.95 0.00 39.37 4.02
2778 2875 5.358160 GGGGAATTCTAGAAAACATGTGAGG 59.642 44.000 9.71 0.00 0.00 3.86
2779 2876 5.945784 TGGGGAATTCTAGAAAACATGTGAG 59.054 40.000 9.71 0.00 0.00 3.51
2890 2987 6.555315 AGAAAATGAACATAAAAGCCGCTAG 58.445 36.000 0.00 0.00 0.00 3.42
2960 3092 8.630054 AGGCTACATGACAATGTAACTTTTTA 57.370 30.769 0.00 0.00 46.22 1.52
3049 3234 1.069978 CAATTGGGGGTTGTGGTTGAC 59.930 52.381 0.00 0.00 0.00 3.18
3065 3250 9.423061 GCCAAATTGTTCTGACTAATTACAATT 57.577 29.630 9.08 9.08 45.93 2.32
3285 3634 5.410439 AGTTGTGGTTTTAGGCTGTATTACG 59.590 40.000 0.00 0.00 0.00 3.18
3323 3679 5.647658 CCAGTCCATGATTGTAACTAAAGCA 59.352 40.000 0.00 0.00 0.00 3.91
3334 3690 2.495155 TCACCACCAGTCCATGATTG 57.505 50.000 0.00 0.00 0.00 2.67
3346 3702 3.123050 GCAAAACACAATCTTCACCACC 58.877 45.455 0.00 0.00 0.00 4.61
3425 3841 6.261826 CCTTATCTAAGCACCTGAAAGGATTG 59.738 42.308 0.00 0.00 44.03 2.67
3429 3845 3.879892 GCCTTATCTAAGCACCTGAAAGG 59.120 47.826 0.00 0.00 45.58 3.11
3608 4024 0.251341 GTTGGATGAAGGTGGTGGCT 60.251 55.000 0.00 0.00 0.00 4.75
3733 4149 1.212688 TGGCTACTGGGATCACAATGG 59.787 52.381 0.00 0.00 0.00 3.16
3747 4163 0.030369 CCGGTGTATCGTCTGGCTAC 59.970 60.000 0.00 0.00 0.00 3.58
3749 4165 0.968901 TTCCGGTGTATCGTCTGGCT 60.969 55.000 0.00 0.00 0.00 4.75
4043 4459 6.773200 AGATGATCATCGAGTTCAGGTAGTAA 59.227 38.462 26.09 0.00 42.48 2.24
4046 4462 5.616645 CGAGATGATCATCGAGTTCAGGTAG 60.617 48.000 26.09 5.93 42.48 3.18
4202 4618 3.792956 TCACCGTATAATTCTTCGCGAAC 59.207 43.478 19.38 5.24 33.72 3.95
4208 4624 7.487189 TCGACTTTCTTCACCGTATAATTCTTC 59.513 37.037 0.00 0.00 0.00 2.87
4248 4664 1.349688 AGGATAACCGACAGCAAACCA 59.650 47.619 0.00 0.00 41.83 3.67
4278 4711 3.687698 GTGGTTTTGTAGACGGTGCATAT 59.312 43.478 0.00 0.00 0.00 1.78
4283 4716 3.623960 TCAAAGTGGTTTTGTAGACGGTG 59.376 43.478 0.00 0.00 45.17 4.94
4306 4739 7.477422 CAGGAATTTCGGCGATATTTAATTACG 59.523 37.037 22.94 12.72 0.00 3.18
4333 4767 9.097257 CACCTTTTATTCAAATGAACACAACTT 57.903 29.630 0.00 0.00 36.80 2.66
4392 4832 0.682852 AGGGTACGCAGCTGTAAACA 59.317 50.000 16.64 0.00 0.00 2.83
4393 4833 1.067071 AGAGGGTACGCAGCTGTAAAC 60.067 52.381 16.64 10.44 0.00 2.01
4394 4834 1.263356 AGAGGGTACGCAGCTGTAAA 58.737 50.000 16.64 0.00 0.00 2.01
4395 4835 1.263356 AAGAGGGTACGCAGCTGTAA 58.737 50.000 16.64 0.00 0.00 2.41
4396 4836 1.067142 CAAAGAGGGTACGCAGCTGTA 60.067 52.381 16.64 0.00 0.00 2.74
4397 4837 0.320771 CAAAGAGGGTACGCAGCTGT 60.321 55.000 16.64 0.00 0.00 4.40
4398 4838 0.320771 ACAAAGAGGGTACGCAGCTG 60.321 55.000 10.11 10.11 0.00 4.24
4399 4839 0.396811 AACAAAGAGGGTACGCAGCT 59.603 50.000 12.95 6.13 0.00 4.24
4400 4840 0.796927 GAACAAAGAGGGTACGCAGC 59.203 55.000 12.95 3.79 0.00 5.25
4401 4841 2.457366 AGAACAAAGAGGGTACGCAG 57.543 50.000 12.95 0.00 0.00 5.18
4402 4842 2.922740 AAGAACAAAGAGGGTACGCA 57.077 45.000 12.95 0.00 0.00 5.24
4403 4843 4.563337 AAAAAGAACAAAGAGGGTACGC 57.437 40.909 0.77 0.77 0.00 4.42
4404 4844 7.386848 TCAGATAAAAAGAACAAAGAGGGTACG 59.613 37.037 0.00 0.00 0.00 3.67
4405 4845 8.617290 TCAGATAAAAAGAACAAAGAGGGTAC 57.383 34.615 0.00 0.00 0.00 3.34
4406 4846 8.437575 ACTCAGATAAAAAGAACAAAGAGGGTA 58.562 33.333 0.00 0.00 0.00 3.69
4407 4847 7.290813 ACTCAGATAAAAAGAACAAAGAGGGT 58.709 34.615 0.00 0.00 0.00 4.34
4408 4848 7.751768 ACTCAGATAAAAAGAACAAAGAGGG 57.248 36.000 0.00 0.00 0.00 4.30
4411 4851 9.847224 ACCTTACTCAGATAAAAAGAACAAAGA 57.153 29.630 0.00 0.00 0.00 2.52
4412 4852 9.884465 CACCTTACTCAGATAAAAAGAACAAAG 57.116 33.333 0.00 0.00 0.00 2.77
4413 4853 9.403583 ACACCTTACTCAGATAAAAAGAACAAA 57.596 29.630 0.00 0.00 0.00 2.83
4414 4854 8.974060 ACACCTTACTCAGATAAAAAGAACAA 57.026 30.769 0.00 0.00 0.00 2.83
4415 4855 9.706691 CTACACCTTACTCAGATAAAAAGAACA 57.293 33.333 0.00 0.00 0.00 3.18
4416 4856 8.657729 GCTACACCTTACTCAGATAAAAAGAAC 58.342 37.037 0.00 0.00 0.00 3.01
4417 4857 8.372459 TGCTACACCTTACTCAGATAAAAAGAA 58.628 33.333 0.00 0.00 0.00 2.52
4418 4858 7.903145 TGCTACACCTTACTCAGATAAAAAGA 58.097 34.615 0.00 0.00 0.00 2.52
4419 4859 8.547967 TTGCTACACCTTACTCAGATAAAAAG 57.452 34.615 0.00 0.00 0.00 2.27
4420 4860 8.911918 TTTGCTACACCTTACTCAGATAAAAA 57.088 30.769 0.00 0.00 0.00 1.94
4421 4861 8.946085 CATTTGCTACACCTTACTCAGATAAAA 58.054 33.333 0.00 0.00 0.00 1.52
4422 4862 7.552687 CCATTTGCTACACCTTACTCAGATAAA 59.447 37.037 0.00 0.00 0.00 1.40
4423 4863 7.047891 CCATTTGCTACACCTTACTCAGATAA 58.952 38.462 0.00 0.00 0.00 1.75
4424 4864 6.156256 ACCATTTGCTACACCTTACTCAGATA 59.844 38.462 0.00 0.00 0.00 1.98
4425 4865 5.045578 ACCATTTGCTACACCTTACTCAGAT 60.046 40.000 0.00 0.00 0.00 2.90
4426 4866 4.286032 ACCATTTGCTACACCTTACTCAGA 59.714 41.667 0.00 0.00 0.00 3.27
4427 4867 4.579869 ACCATTTGCTACACCTTACTCAG 58.420 43.478 0.00 0.00 0.00 3.35
4428 4868 4.634012 ACCATTTGCTACACCTTACTCA 57.366 40.909 0.00 0.00 0.00 3.41
4429 4869 4.874396 GGTACCATTTGCTACACCTTACTC 59.126 45.833 7.15 0.00 0.00 2.59
4430 4870 4.840271 GGTACCATTTGCTACACCTTACT 58.160 43.478 7.15 0.00 0.00 2.24
4647 5087 2.032620 CCCTCATGAGTAGCGTTACCT 58.967 52.381 21.11 0.00 0.00 3.08
4670 5110 9.930158 TTTATAATTAGGGTTAGCCAAATCTGT 57.070 29.630 2.44 0.00 36.17 3.41
4719 5160 6.578545 CACCACAACTTGATCGTGATTTAAAG 59.421 38.462 0.00 0.00 32.23 1.85
4791 5232 3.790437 CCCATCCTGGCTGCGTCT 61.790 66.667 0.00 0.00 35.79 4.18
4835 5276 1.153568 GCTCACATAGCGCAGACCA 60.154 57.895 11.47 0.00 42.53 4.02
4904 5345 1.226831 GTTGTGTGGTTGCCGGTTG 60.227 57.895 1.90 0.00 0.00 3.77
4935 5379 7.060600 CGATGTGCAAACGGAATACATATAT 57.939 36.000 0.00 0.00 32.58 0.86
4936 5380 6.460664 CGATGTGCAAACGGAATACATATA 57.539 37.500 0.00 0.00 32.58 0.86
4937 5381 5.342806 CGATGTGCAAACGGAATACATAT 57.657 39.130 0.00 0.00 32.58 1.78
4938 5382 4.787381 CGATGTGCAAACGGAATACATA 57.213 40.909 0.00 0.00 32.58 2.29
4939 5383 3.673746 CGATGTGCAAACGGAATACAT 57.326 42.857 0.00 0.00 34.91 2.29
4959 5403 1.038681 TGCATCACATGGCCATCACC 61.039 55.000 17.61 1.83 0.00 4.02
4960 5404 1.037493 ATGCATCACATGGCCATCAC 58.963 50.000 17.61 2.19 37.70 3.06
4963 5407 1.958579 GTGTATGCATCACATGGCCAT 59.041 47.619 14.09 14.09 40.06 4.40
4965 5409 1.066002 GTGTGTATGCATCACATGGCC 59.934 52.381 24.78 14.15 45.43 5.36
4977 5421 3.245518 TCCAGGATGAACGTGTGTATG 57.754 47.619 0.00 0.00 39.69 2.39
4992 5436 4.881850 AGTTAGGTGCGATTTAATTCCAGG 59.118 41.667 0.00 0.00 0.00 4.45
5033 5477 2.025359 GATCTGTCGCCGCGGAAAAG 62.025 60.000 33.48 20.35 0.00 2.27
5060 5504 1.611491 TCTTCCCCATTGAAACGCAAC 59.389 47.619 0.00 0.00 39.78 4.17
5061 5505 1.988293 TCTTCCCCATTGAAACGCAA 58.012 45.000 0.00 0.00 41.53 4.85
5062 5506 2.214376 ATCTTCCCCATTGAAACGCA 57.786 45.000 0.00 0.00 0.00 5.24
5063 5507 3.066760 CCTAATCTTCCCCATTGAAACGC 59.933 47.826 0.00 0.00 0.00 4.84
5064 5508 3.066760 GCCTAATCTTCCCCATTGAAACG 59.933 47.826 0.00 0.00 0.00 3.60
5107 5552 7.402071 AGGGGTAGTTCAGTTCTTGTATCAATA 59.598 37.037 0.00 0.00 0.00 1.90
5109 5554 5.546499 AGGGGTAGTTCAGTTCTTGTATCAA 59.454 40.000 0.00 0.00 0.00 2.57
5110 5555 5.046591 CAGGGGTAGTTCAGTTCTTGTATCA 60.047 44.000 0.00 0.00 0.00 2.15
5119 5564 1.729586 TCAGCAGGGGTAGTTCAGTT 58.270 50.000 0.00 0.00 0.00 3.16
5185 5630 2.901839 TGAGCTCTTTTACGGTACCCTT 59.098 45.455 16.19 0.00 0.00 3.95
5200 5645 5.618056 TGAGTCAATGTTCAATTGAGCTC 57.382 39.130 21.00 6.82 38.54 4.09
5201 5646 6.387465 CATTGAGTCAATGTTCAATTGAGCT 58.613 36.000 29.91 6.22 44.12 4.09
5202 5647 5.575606 CCATTGAGTCAATGTTCAATTGAGC 59.424 40.000 33.33 14.76 46.69 4.26
5203 5648 5.575606 GCCATTGAGTCAATGTTCAATTGAG 59.424 40.000 33.33 20.57 46.69 3.02
5204 5649 5.010820 TGCCATTGAGTCAATGTTCAATTGA 59.989 36.000 33.33 3.38 46.69 2.57
5205 5650 5.231702 TGCCATTGAGTCAATGTTCAATTG 58.768 37.500 33.33 21.68 46.69 2.32
5206 5651 5.471556 TGCCATTGAGTCAATGTTCAATT 57.528 34.783 33.33 5.44 46.69 2.32
5207 5652 4.081862 CCTGCCATTGAGTCAATGTTCAAT 60.082 41.667 33.33 6.14 46.69 2.57
5208 5653 3.256383 CCTGCCATTGAGTCAATGTTCAA 59.744 43.478 33.33 19.64 46.69 2.69
5209 5654 2.821378 CCTGCCATTGAGTCAATGTTCA 59.179 45.455 33.33 28.45 46.69 3.18
5210 5655 3.084039 TCCTGCCATTGAGTCAATGTTC 58.916 45.455 33.33 26.30 46.69 3.18
5211 5656 3.087031 CTCCTGCCATTGAGTCAATGTT 58.913 45.455 33.33 8.21 46.69 2.71
5212 5657 2.040813 ACTCCTGCCATTGAGTCAATGT 59.959 45.455 33.33 17.52 46.69 2.71
5214 5659 2.719739 CACTCCTGCCATTGAGTCAAT 58.280 47.619 12.75 12.75 39.76 2.57
5215 5660 1.883638 GCACTCCTGCCATTGAGTCAA 60.884 52.381 8.27 8.27 39.76 3.18
5216 5661 0.321919 GCACTCCTGCCATTGAGTCA 60.322 55.000 0.00 0.00 39.76 3.41
5217 5662 0.321919 TGCACTCCTGCCATTGAGTC 60.322 55.000 0.00 0.00 43.51 3.36
5218 5663 0.322277 CTGCACTCCTGCCATTGAGT 60.322 55.000 0.00 0.00 43.51 3.41
5219 5664 1.030488 CCTGCACTCCTGCCATTGAG 61.030 60.000 0.00 0.00 43.51 3.02
5220 5665 1.001764 CCTGCACTCCTGCCATTGA 60.002 57.895 0.00 0.00 43.51 2.57
5221 5666 2.707849 GCCTGCACTCCTGCCATTG 61.708 63.158 0.00 0.00 43.51 2.82
5222 5667 2.362120 GCCTGCACTCCTGCCATT 60.362 61.111 0.00 0.00 43.51 3.16
5223 5668 4.437587 GGCCTGCACTCCTGCCAT 62.438 66.667 0.00 0.00 43.51 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.