Multiple sequence alignment - TraesCS1D01G200800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G200800 chr1D 100.000 4436 0 0 1 4436 283578462 283574027 0.000000e+00 8192.0
1 TraesCS1D01G200800 chr1A 94.019 2558 95 28 1604 4128 355338012 355335480 0.000000e+00 3823.0
2 TraesCS1D01G200800 chr1A 90.000 610 36 14 724 1325 355338848 355338256 0.000000e+00 765.0
3 TraesCS1D01G200800 chr1A 92.093 215 11 3 1310 1519 355338240 355338027 9.330000e-77 298.0
4 TraesCS1D01G200800 chr1A 94.444 126 7 0 4250 4375 355335480 355335355 1.260000e-45 195.0
5 TraesCS1D01G200800 chr1A 98.020 101 2 0 4336 4436 68935437 68935537 4.560000e-40 176.0
6 TraesCS1D01G200800 chr1A 96.970 33 1 0 2947 2979 541320615 541320647 6.200000e-04 56.5
7 TraesCS1D01G200800 chr1B 93.970 2156 84 24 1631 3756 385215224 385213085 0.000000e+00 3219.0
8 TraesCS1D01G200800 chr1B 90.728 1154 70 13 184 1325 385216602 385215474 0.000000e+00 1504.0
9 TraesCS1D01G200800 chr1B 92.056 214 12 2 1310 1519 385215458 385215246 3.350000e-76 296.0
10 TraesCS1D01G200800 chr1B 90.909 176 12 1 12 183 405960574 405960749 2.670000e-57 233.0
11 TraesCS1D01G200800 chr1B 94.488 127 7 0 3822 3948 385212918 385212792 3.500000e-46 196.0
12 TraesCS1D01G200800 chr1B 94.400 125 7 0 3939 4063 385176094 385175970 4.530000e-45 193.0
13 TraesCS1D01G200800 chr1B 94.624 93 5 0 3750 3842 385213022 385212930 1.290000e-30 145.0
14 TraesCS1D01G200800 chr1B 82.836 134 15 4 4146 4271 385175921 385175788 3.630000e-21 113.0
15 TraesCS1D01G200800 chr4D 90.526 190 13 3 1 186 410644202 410644014 3.430000e-61 246.0
16 TraesCS1D01G200800 chr7D 90.104 192 9 3 1 183 590961416 590961606 1.590000e-59 241.0
17 TraesCS1D01G200800 chr7D 88.718 195 12 3 1 186 577713763 577713570 3.450000e-56 230.0
18 TraesCS1D01G200800 chr7D 98.020 101 2 0 4336 4436 381955221 381955121 4.560000e-40 176.0
19 TraesCS1D01G200800 chr7D 90.909 44 2 1 2968 3009 42838853 42838896 1.720000e-04 58.4
20 TraesCS1D01G200800 chr7D 100.000 28 0 0 2991 3018 126669715 126669688 8.000000e-03 52.8
21 TraesCS1D01G200800 chr3D 90.270 185 15 3 1 183 508811191 508811374 5.730000e-59 239.0
22 TraesCS1D01G200800 chr4A 89.062 192 12 5 1 186 74504060 74503872 3.450000e-56 230.0
23 TraesCS1D01G200800 chr4A 98.020 101 2 0 4336 4436 67526481 67526381 4.560000e-40 176.0
24 TraesCS1D01G200800 chr4A 84.211 95 13 2 1514 1606 599784400 599784494 1.700000e-14 91.6
25 TraesCS1D01G200800 chr4A 100.000 29 0 0 1579 1607 537589330 537589358 2.000000e-03 54.7
26 TraesCS1D01G200800 chr5D 89.560 182 11 7 3 183 23000695 23000869 1.610000e-54 224.0
27 TraesCS1D01G200800 chr5D 88.021 192 13 5 1 183 139161159 139161349 7.470000e-53 219.0
28 TraesCS1D01G200800 chr5D 84.043 94 5 5 2923 3010 486445337 486445248 1.020000e-11 82.4
29 TraesCS1D01G200800 chr2A 87.958 191 17 5 1 186 72153315 72153126 2.080000e-53 220.0
30 TraesCS1D01G200800 chr2A 88.000 50 4 2 3851 3900 758175340 758175387 1.720000e-04 58.4
31 TraesCS1D01G200800 chrUn 98.020 101 2 0 4336 4436 45082668 45082568 4.560000e-40 176.0
32 TraesCS1D01G200800 chrUn 98.020 101 2 0 4336 4436 182463185 182463285 4.560000e-40 176.0
33 TraesCS1D01G200800 chrUn 89.412 85 8 1 1521 1604 24873916 24874000 6.070000e-19 106.0
34 TraesCS1D01G200800 chr6D 98.020 101 2 0 4336 4436 57908988 57909088 4.560000e-40 176.0
35 TraesCS1D01G200800 chr6D 98.020 101 2 0 4336 4436 108508085 108508185 4.560000e-40 176.0
36 TraesCS1D01G200800 chr4B 98.020 101 2 0 4336 4436 209183922 209184022 4.560000e-40 176.0
37 TraesCS1D01G200800 chr3A 97.143 105 2 1 4333 4436 681272336 681272440 4.560000e-40 176.0
38 TraesCS1D01G200800 chr2D 89.412 85 8 1 1521 1604 25267377 25267461 6.070000e-19 106.0
39 TraesCS1D01G200800 chr7B 86.813 91 10 2 1516 1604 717283663 717283573 2.820000e-17 100.0
40 TraesCS1D01G200800 chr7B 89.333 75 6 2 1521 1593 684471775 684471701 4.720000e-15 93.5
41 TraesCS1D01G200800 chr5A 88.235 85 9 1 1521 1604 491315768 491315852 2.820000e-17 100.0
42 TraesCS1D01G200800 chr6A 86.885 61 1 6 2970 3023 40610917 40610857 1.330000e-05 62.1
43 TraesCS1D01G200800 chr3B 91.304 46 3 1 1556 1601 70849910 70849954 1.330000e-05 62.1
44 TraesCS1D01G200800 chr7A 90.909 44 2 1 2968 3009 42523424 42523467 1.720000e-04 58.4
45 TraesCS1D01G200800 chr7A 92.683 41 2 1 1564 1604 62751147 62751186 1.720000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G200800 chr1D 283574027 283578462 4435 True 8192.00 8192 100.0000 1 4436 1 chr1D.!!$R1 4435
1 TraesCS1D01G200800 chr1A 355335355 355338848 3493 True 1270.25 3823 92.6390 724 4375 4 chr1A.!!$R1 3651
2 TraesCS1D01G200800 chr1B 385212792 385216602 3810 True 1072.00 3219 93.1732 184 3948 5 chr1B.!!$R2 3764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.033504 ACGACTCCATCAACTGCGTT 59.966 50.0 0.0 0.0 0.00 4.84 F
103 104 0.038067 TGTAACGCTTCCGCTTAGCA 60.038 50.0 4.7 0.0 38.55 3.49 F
255 256 0.041238 AACCGTCCCTCCTCATCTCA 59.959 55.0 0.0 0.0 0.00 3.27 F
256 257 0.041238 ACCGTCCCTCCTCATCTCAA 59.959 55.0 0.0 0.0 0.00 3.02 F
521 524 0.107410 AAAGCGTGACCAACTGACCA 60.107 50.0 0.0 0.0 0.00 4.02 F
2261 2347 0.251341 AGGAAGGGATGTGTGGTTGC 60.251 55.0 0.0 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1158 1179 0.321653 ATCTTGACCGAACAGCCACC 60.322 55.000 0.0 0.0 0.00 4.61 R
1612 1668 0.882927 TCAAACCCCGCACTTTCTCG 60.883 55.000 0.0 0.0 0.00 4.04 R
1917 2003 1.850345 AGTGGGGACTCCAACTTGAAA 59.150 47.619 0.0 0.0 44.90 2.69 R
2025 2111 4.398358 CAGTGAGTACCGACAAGAATAGGA 59.602 45.833 0.0 0.0 0.00 2.94 R
2398 2484 1.555533 GCAGTAGCTCAACTAAGGGGT 59.444 52.381 0.0 0.0 37.91 4.95 R
4168 4362 0.251742 CCAGACCCAAGAAATGCCCA 60.252 55.000 0.0 0.0 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.077184 TCCGTTCGGCGCTTGGAT 62.077 61.111 7.64 0.00 39.71 3.41
31 32 3.564027 CCGTTCGGCGCTTGGATC 61.564 66.667 7.64 1.16 39.71 3.36
32 33 2.813474 CGTTCGGCGCTTGGATCA 60.813 61.111 7.64 0.00 0.00 2.92
33 34 2.387445 CGTTCGGCGCTTGGATCAA 61.387 57.895 7.64 0.00 0.00 2.57
34 35 1.873165 GTTCGGCGCTTGGATCAAA 59.127 52.632 7.64 0.00 0.00 2.69
35 36 0.451783 GTTCGGCGCTTGGATCAAAT 59.548 50.000 7.64 0.00 0.00 2.32
36 37 0.732571 TTCGGCGCTTGGATCAAATC 59.267 50.000 7.64 0.00 0.00 2.17
37 38 0.107703 TCGGCGCTTGGATCAAATCT 60.108 50.000 7.64 0.00 0.00 2.40
38 39 0.734889 CGGCGCTTGGATCAAATCTT 59.265 50.000 7.64 0.00 0.00 2.40
39 40 1.268234 CGGCGCTTGGATCAAATCTTC 60.268 52.381 7.64 0.00 0.00 2.87
40 41 1.066152 GGCGCTTGGATCAAATCTTCC 59.934 52.381 7.64 0.00 0.00 3.46
41 42 1.268234 GCGCTTGGATCAAATCTTCCG 60.268 52.381 0.00 0.00 34.58 4.30
42 43 1.268234 CGCTTGGATCAAATCTTCCGC 60.268 52.381 0.00 0.00 34.58 5.54
43 44 1.268234 GCTTGGATCAAATCTTCCGCG 60.268 52.381 0.00 0.00 34.58 6.46
44 45 2.279741 CTTGGATCAAATCTTCCGCGA 58.720 47.619 8.23 0.00 34.58 5.87
45 46 2.620251 TGGATCAAATCTTCCGCGAT 57.380 45.000 8.23 0.00 34.58 4.58
46 47 2.917933 TGGATCAAATCTTCCGCGATT 58.082 42.857 8.23 0.00 35.23 3.34
47 48 3.278574 TGGATCAAATCTTCCGCGATTT 58.721 40.909 8.23 2.04 42.63 2.17
48 49 4.447290 TGGATCAAATCTTCCGCGATTTA 58.553 39.130 8.23 0.00 40.59 1.40
49 50 4.878971 TGGATCAAATCTTCCGCGATTTAA 59.121 37.500 8.23 0.00 40.59 1.52
50 51 5.355630 TGGATCAAATCTTCCGCGATTTAAA 59.644 36.000 8.23 0.00 40.59 1.52
51 52 6.039270 TGGATCAAATCTTCCGCGATTTAAAT 59.961 34.615 8.23 0.00 40.59 1.40
52 53 6.578919 GGATCAAATCTTCCGCGATTTAAATC 59.421 38.462 16.79 16.79 40.59 2.17
63 64 3.151216 GATTTAAATCGCCGCGAGTAC 57.849 47.619 21.61 5.29 39.91 2.73
64 65 0.915904 TTTAAATCGCCGCGAGTACG 59.084 50.000 21.61 6.02 39.91 3.67
65 66 0.098552 TTAAATCGCCGCGAGTACGA 59.901 50.000 21.61 12.00 39.91 3.43
66 67 0.589729 TAAATCGCCGCGAGTACGAC 60.590 55.000 21.61 0.00 39.91 4.34
67 68 2.262471 AAATCGCCGCGAGTACGACT 62.262 55.000 21.61 0.00 39.91 4.18
68 69 2.643764 AATCGCCGCGAGTACGACTC 62.644 60.000 21.61 0.00 39.91 3.36
69 70 4.883300 CGCCGCGAGTACGACTCC 62.883 72.222 8.23 3.02 42.12 3.85
70 71 3.807538 GCCGCGAGTACGACTCCA 61.808 66.667 8.23 0.00 42.12 3.86
71 72 3.108343 CCGCGAGTACGACTCCAT 58.892 61.111 8.23 0.00 42.12 3.41
72 73 1.009900 CCGCGAGTACGACTCCATC 60.010 63.158 8.23 0.62 42.12 3.51
73 74 1.712018 CCGCGAGTACGACTCCATCA 61.712 60.000 8.23 0.00 42.12 3.07
74 75 0.098200 CGCGAGTACGACTCCATCAA 59.902 55.000 0.00 0.00 42.12 2.57
75 76 1.546834 GCGAGTACGACTCCATCAAC 58.453 55.000 8.73 0.00 42.12 3.18
76 77 1.132643 GCGAGTACGACTCCATCAACT 59.867 52.381 8.73 0.00 42.12 3.16
77 78 2.786854 CGAGTACGACTCCATCAACTG 58.213 52.381 8.73 0.00 42.12 3.16
78 79 2.531206 GAGTACGACTCCATCAACTGC 58.469 52.381 0.00 0.00 39.28 4.40
79 80 1.135373 AGTACGACTCCATCAACTGCG 60.135 52.381 0.00 0.00 0.00 5.18
80 81 0.885879 TACGACTCCATCAACTGCGT 59.114 50.000 0.00 0.00 0.00 5.24
81 82 0.033504 ACGACTCCATCAACTGCGTT 59.966 50.000 0.00 0.00 0.00 4.84
82 83 0.716108 CGACTCCATCAACTGCGTTC 59.284 55.000 0.00 0.00 0.00 3.95
83 84 1.670087 CGACTCCATCAACTGCGTTCT 60.670 52.381 0.00 0.00 0.00 3.01
84 85 2.417719 GACTCCATCAACTGCGTTCTT 58.582 47.619 0.00 0.00 0.00 2.52
85 86 2.146342 ACTCCATCAACTGCGTTCTTG 58.854 47.619 0.00 0.00 0.00 3.02
86 87 2.146342 CTCCATCAACTGCGTTCTTGT 58.854 47.619 0.00 0.00 0.00 3.16
87 88 3.244078 ACTCCATCAACTGCGTTCTTGTA 60.244 43.478 0.00 0.00 0.00 2.41
88 89 3.734463 TCCATCAACTGCGTTCTTGTAA 58.266 40.909 0.00 0.00 0.00 2.41
89 90 3.496884 TCCATCAACTGCGTTCTTGTAAC 59.503 43.478 0.00 0.00 0.00 2.50
90 91 3.469629 CATCAACTGCGTTCTTGTAACG 58.530 45.455 5.94 5.94 45.56 3.18
96 97 3.921081 CGTTCTTGTAACGCTTCCG 57.079 52.632 0.00 0.00 36.82 4.30
97 98 0.179258 CGTTCTTGTAACGCTTCCGC 60.179 55.000 0.00 0.00 36.82 5.54
98 99 1.145803 GTTCTTGTAACGCTTCCGCT 58.854 50.000 0.00 0.00 38.22 5.52
99 100 1.529865 GTTCTTGTAACGCTTCCGCTT 59.470 47.619 0.00 0.00 38.22 4.68
100 101 2.728690 TCTTGTAACGCTTCCGCTTA 57.271 45.000 0.00 0.00 38.22 3.09
101 102 2.602878 TCTTGTAACGCTTCCGCTTAG 58.397 47.619 0.00 0.00 38.22 2.18
102 103 1.060698 CTTGTAACGCTTCCGCTTAGC 59.939 52.381 0.00 0.00 38.22 3.09
103 104 0.038067 TGTAACGCTTCCGCTTAGCA 60.038 50.000 4.70 0.00 38.55 3.49
104 105 1.073177 GTAACGCTTCCGCTTAGCAA 58.927 50.000 4.70 0.00 38.55 3.91
105 106 1.664151 GTAACGCTTCCGCTTAGCAAT 59.336 47.619 4.70 0.00 38.55 3.56
106 107 0.727398 AACGCTTCCGCTTAGCAATC 59.273 50.000 4.70 0.00 38.55 2.67
107 108 0.108138 ACGCTTCCGCTTAGCAATCT 60.108 50.000 4.70 0.00 38.55 2.40
108 109 1.009829 CGCTTCCGCTTAGCAATCTT 58.990 50.000 4.70 0.00 38.55 2.40
109 110 1.004504 CGCTTCCGCTTAGCAATCTTC 60.005 52.381 4.70 0.00 38.55 2.87
110 111 1.004504 GCTTCCGCTTAGCAATCTTCG 60.005 52.381 4.70 0.00 38.51 3.79
111 112 2.540515 CTTCCGCTTAGCAATCTTCGA 58.459 47.619 4.70 0.00 0.00 3.71
112 113 2.665649 TCCGCTTAGCAATCTTCGAA 57.334 45.000 4.70 0.00 0.00 3.71
113 114 2.540515 TCCGCTTAGCAATCTTCGAAG 58.459 47.619 19.35 19.35 0.00 3.79
114 115 2.165641 TCCGCTTAGCAATCTTCGAAGA 59.834 45.455 28.85 28.85 39.78 2.87
116 117 3.060003 CCGCTTAGCAATCTTCGAAGATG 60.060 47.826 34.93 27.84 44.67 2.90
117 118 3.603401 CGCTTAGCAATCTTCGAAGATGC 60.603 47.826 34.93 33.52 44.67 3.91
118 119 3.310774 GCTTAGCAATCTTCGAAGATGCA 59.689 43.478 36.23 27.35 44.67 3.96
119 120 4.024218 GCTTAGCAATCTTCGAAGATGCAT 60.024 41.667 36.23 28.78 44.67 3.96
120 121 5.505324 GCTTAGCAATCTTCGAAGATGCATT 60.505 40.000 36.23 27.67 44.67 3.56
121 122 4.548991 AGCAATCTTCGAAGATGCATTC 57.451 40.909 36.23 25.75 44.67 2.67
122 123 3.314635 AGCAATCTTCGAAGATGCATTCC 59.685 43.478 36.23 24.31 44.67 3.01
123 124 3.549625 GCAATCTTCGAAGATGCATTCCC 60.550 47.826 34.93 17.14 44.67 3.97
124 125 3.853355 ATCTTCGAAGATGCATTCCCT 57.147 42.857 34.07 12.46 43.81 4.20
125 126 3.185246 TCTTCGAAGATGCATTCCCTC 57.815 47.619 23.74 0.00 35.04 4.30
126 127 2.768527 TCTTCGAAGATGCATTCCCTCT 59.231 45.455 23.74 0.00 35.04 3.69
127 128 2.898729 TCGAAGATGCATTCCCTCTC 57.101 50.000 0.00 0.00 0.00 3.20
128 129 2.392662 TCGAAGATGCATTCCCTCTCT 58.607 47.619 0.00 0.00 0.00 3.10
129 130 2.363680 TCGAAGATGCATTCCCTCTCTC 59.636 50.000 0.00 0.00 0.00 3.20
130 131 2.364970 CGAAGATGCATTCCCTCTCTCT 59.635 50.000 0.00 0.00 0.00 3.10
131 132 3.552684 CGAAGATGCATTCCCTCTCTCTC 60.553 52.174 0.00 0.00 0.00 3.20
132 133 1.962807 AGATGCATTCCCTCTCTCTCG 59.037 52.381 0.00 0.00 0.00 4.04
133 134 1.686052 GATGCATTCCCTCTCTCTCGT 59.314 52.381 0.00 0.00 0.00 4.18
134 135 1.561643 TGCATTCCCTCTCTCTCGTT 58.438 50.000 0.00 0.00 0.00 3.85
135 136 1.205655 TGCATTCCCTCTCTCTCGTTG 59.794 52.381 0.00 0.00 0.00 4.10
136 137 1.933247 CATTCCCTCTCTCTCGTTGC 58.067 55.000 0.00 0.00 0.00 4.17
137 138 1.480137 CATTCCCTCTCTCTCGTTGCT 59.520 52.381 0.00 0.00 0.00 3.91
138 139 2.509166 TTCCCTCTCTCTCGTTGCTA 57.491 50.000 0.00 0.00 0.00 3.49
139 140 2.045561 TCCCTCTCTCTCGTTGCTAG 57.954 55.000 0.00 0.00 0.00 3.42
140 141 0.383949 CCCTCTCTCTCGTTGCTAGC 59.616 60.000 8.10 8.10 0.00 3.42
141 142 1.098869 CCTCTCTCTCGTTGCTAGCA 58.901 55.000 14.93 14.93 0.00 3.49
142 143 1.680735 CCTCTCTCTCGTTGCTAGCAT 59.319 52.381 20.13 0.00 0.00 3.79
143 144 2.287547 CCTCTCTCTCGTTGCTAGCATC 60.288 54.545 20.13 17.01 0.00 3.91
144 145 2.618241 CTCTCTCTCGTTGCTAGCATCT 59.382 50.000 20.13 0.00 0.00 2.90
145 146 3.020274 TCTCTCTCGTTGCTAGCATCTT 58.980 45.455 20.13 0.00 0.00 2.40
146 147 3.066064 TCTCTCTCGTTGCTAGCATCTTC 59.934 47.826 20.13 8.74 0.00 2.87
147 148 3.020274 TCTCTCGTTGCTAGCATCTTCT 58.980 45.455 20.13 0.00 0.00 2.85
148 149 4.200092 TCTCTCGTTGCTAGCATCTTCTA 58.800 43.478 20.13 0.00 0.00 2.10
149 150 4.274705 TCTCTCGTTGCTAGCATCTTCTAG 59.725 45.833 20.13 12.00 39.17 2.43
150 151 4.200092 TCTCGTTGCTAGCATCTTCTAGA 58.800 43.478 20.13 13.80 38.61 2.43
151 152 4.824537 TCTCGTTGCTAGCATCTTCTAGAT 59.175 41.667 20.13 0.00 38.61 1.98
152 153 5.300539 TCTCGTTGCTAGCATCTTCTAGATT 59.699 40.000 20.13 0.00 38.61 2.40
153 154 5.284864 TCGTTGCTAGCATCTTCTAGATTG 58.715 41.667 20.13 1.96 38.61 2.67
154 155 5.067805 TCGTTGCTAGCATCTTCTAGATTGA 59.932 40.000 20.13 4.36 38.61 2.57
155 156 5.925397 CGTTGCTAGCATCTTCTAGATTGAT 59.075 40.000 20.13 0.00 38.61 2.57
156 157 6.089283 CGTTGCTAGCATCTTCTAGATTGATC 59.911 42.308 20.13 0.00 38.61 2.92
157 158 6.914654 TGCTAGCATCTTCTAGATTGATCT 57.085 37.500 14.93 0.00 38.61 2.75
158 159 7.300556 TGCTAGCATCTTCTAGATTGATCTT 57.699 36.000 14.93 0.00 38.61 2.40
159 160 7.153315 TGCTAGCATCTTCTAGATTGATCTTG 58.847 38.462 14.93 0.00 38.61 3.02
160 161 6.591062 GCTAGCATCTTCTAGATTGATCTTGG 59.409 42.308 10.63 0.00 38.61 3.61
161 162 6.497624 AGCATCTTCTAGATTGATCTTGGT 57.502 37.500 0.00 0.00 38.32 3.67
162 163 6.289834 AGCATCTTCTAGATTGATCTTGGTG 58.710 40.000 0.00 0.00 38.32 4.17
163 164 6.099413 AGCATCTTCTAGATTGATCTTGGTGA 59.901 38.462 0.00 1.14 38.32 4.02
164 165 6.202570 GCATCTTCTAGATTGATCTTGGTGAC 59.797 42.308 0.00 0.00 38.32 3.67
165 166 6.857437 TCTTCTAGATTGATCTTGGTGACA 57.143 37.500 0.00 0.00 38.32 3.58
166 167 6.634805 TCTTCTAGATTGATCTTGGTGACAC 58.365 40.000 0.00 0.00 42.67 3.67
167 168 4.998788 TCTAGATTGATCTTGGTGACACG 58.001 43.478 0.00 0.00 42.67 4.49
168 169 3.685139 AGATTGATCTTGGTGACACGT 57.315 42.857 0.00 0.00 42.67 4.49
169 170 4.801330 AGATTGATCTTGGTGACACGTA 57.199 40.909 0.00 0.00 42.67 3.57
170 171 4.748892 AGATTGATCTTGGTGACACGTAG 58.251 43.478 0.00 0.00 42.67 3.51
171 172 3.313012 TTGATCTTGGTGACACGTAGG 57.687 47.619 0.00 0.00 42.67 3.18
172 173 2.521126 TGATCTTGGTGACACGTAGGA 58.479 47.619 0.00 0.00 42.67 2.94
173 174 2.894765 TGATCTTGGTGACACGTAGGAA 59.105 45.455 0.00 0.00 42.67 3.36
174 175 3.322541 TGATCTTGGTGACACGTAGGAAA 59.677 43.478 0.00 0.00 42.67 3.13
175 176 4.020573 TGATCTTGGTGACACGTAGGAAAT 60.021 41.667 0.00 0.00 42.67 2.17
176 177 4.345859 TCTTGGTGACACGTAGGAAATT 57.654 40.909 0.00 0.00 42.67 1.82
177 178 4.710324 TCTTGGTGACACGTAGGAAATTT 58.290 39.130 0.00 0.00 42.67 1.82
178 179 5.127491 TCTTGGTGACACGTAGGAAATTTT 58.873 37.500 0.00 0.00 42.67 1.82
179 180 5.591067 TCTTGGTGACACGTAGGAAATTTTT 59.409 36.000 0.00 0.00 42.67 1.94
180 181 5.176407 TGGTGACACGTAGGAAATTTTTG 57.824 39.130 0.00 0.00 33.40 2.44
181 182 4.882427 TGGTGACACGTAGGAAATTTTTGA 59.118 37.500 0.00 0.00 33.40 2.69
182 183 5.357314 TGGTGACACGTAGGAAATTTTTGAA 59.643 36.000 0.00 0.00 33.40 2.69
222 223 4.250305 ACCGTCCAGCACCACCAC 62.250 66.667 0.00 0.00 0.00 4.16
230 231 2.127232 AGCACCACCACCAAAGCAC 61.127 57.895 0.00 0.00 0.00 4.40
241 242 1.106944 CCAAAGCACCCAAGAACCGT 61.107 55.000 0.00 0.00 0.00 4.83
253 254 0.336737 AGAACCGTCCCTCCTCATCT 59.663 55.000 0.00 0.00 0.00 2.90
255 256 0.041238 AACCGTCCCTCCTCATCTCA 59.959 55.000 0.00 0.00 0.00 3.27
256 257 0.041238 ACCGTCCCTCCTCATCTCAA 59.959 55.000 0.00 0.00 0.00 3.02
257 258 0.461961 CCGTCCCTCCTCATCTCAAC 59.538 60.000 0.00 0.00 0.00 3.18
275 276 2.033755 CAGACCACTGCAGCTGCTC 61.034 63.158 36.61 25.54 42.66 4.26
288 289 1.355720 AGCTGCTCCCCTATTTGTGTT 59.644 47.619 0.00 0.00 0.00 3.32
299 300 3.980775 CCTATTTGTGTTCTTTGCAACGG 59.019 43.478 0.00 0.00 0.00 4.44
350 351 2.890612 TCCGACCGGATACACATGT 58.109 52.632 9.46 0.00 39.76 3.21
354 355 1.801395 CGACCGGATACACATGTCACC 60.801 57.143 9.46 0.00 0.00 4.02
384 385 4.845580 AGCCAAGCGAGCGGATGG 62.846 66.667 11.41 11.41 36.00 3.51
422 423 6.271857 ACATATCTCCAGGTCTTGCAGATAAT 59.728 38.462 0.11 0.00 31.46 1.28
449 450 1.800805 AAACAGATGCGTGGAGAGTG 58.199 50.000 0.00 0.00 0.00 3.51
452 453 2.512515 GATGCGTGGAGAGTGGGC 60.513 66.667 0.00 0.00 0.00 5.36
454 455 2.527951 GATGCGTGGAGAGTGGGCTT 62.528 60.000 0.00 0.00 0.00 4.35
455 456 2.743928 GCGTGGAGAGTGGGCTTG 60.744 66.667 0.00 0.00 0.00 4.01
456 457 2.743928 CGTGGAGAGTGGGCTTGC 60.744 66.667 0.00 0.00 0.00 4.01
457 458 2.743928 GTGGAGAGTGGGCTTGCG 60.744 66.667 0.00 0.00 0.00 4.85
480 483 3.624777 TCCTCCTCATGAATGGCTTTTC 58.375 45.455 0.00 0.00 0.00 2.29
498 501 3.469970 ATCGCGCCCACCAGATCA 61.470 61.111 0.00 0.00 0.00 2.92
514 517 0.179004 ATCACCCAAAGCGTGACCAA 60.179 50.000 0.00 0.00 42.75 3.67
515 518 1.098712 TCACCCAAAGCGTGACCAAC 61.099 55.000 0.00 0.00 35.35 3.77
516 519 1.101049 CACCCAAAGCGTGACCAACT 61.101 55.000 0.00 0.00 32.77 3.16
517 520 1.101049 ACCCAAAGCGTGACCAACTG 61.101 55.000 0.00 0.00 0.00 3.16
518 521 0.817634 CCCAAAGCGTGACCAACTGA 60.818 55.000 0.00 0.00 0.00 3.41
519 522 0.307760 CCAAAGCGTGACCAACTGAC 59.692 55.000 0.00 0.00 0.00 3.51
520 523 0.307760 CAAAGCGTGACCAACTGACC 59.692 55.000 0.00 0.00 0.00 4.02
521 524 0.107410 AAAGCGTGACCAACTGACCA 60.107 50.000 0.00 0.00 0.00 4.02
531 534 2.919602 ACCAACTGACCATAACCTCCAT 59.080 45.455 0.00 0.00 0.00 3.41
627 630 2.225019 GCGGGATCAACACATCATCATC 59.775 50.000 0.00 0.00 0.00 2.92
634 637 1.793414 ACACATCATCATCCCGGAGA 58.207 50.000 0.73 0.00 0.00 3.71
638 641 0.472543 ATCATCATCCCGGAGAGCCA 60.473 55.000 0.73 0.00 0.00 4.75
648 651 1.308998 CGGAGAGCCAACACACTTTT 58.691 50.000 0.00 0.00 0.00 2.27
659 662 5.295950 CCAACACACTTTTTGCCATATTGA 58.704 37.500 0.00 0.00 0.00 2.57
690 693 2.126424 GTGTCTCCACGAGTCGGC 60.126 66.667 18.30 0.45 0.00 5.54
691 694 3.371063 TGTCTCCACGAGTCGGCC 61.371 66.667 18.30 0.00 0.00 6.13
692 695 4.477975 GTCTCCACGAGTCGGCCG 62.478 72.222 22.12 22.12 0.00 6.13
736 739 2.278854 GCAGAGCTGGAGTTCATTCTC 58.721 52.381 0.00 0.00 0.00 2.87
772 775 3.374058 GCCATCGAAAGCTAGCTGTTTTA 59.626 43.478 20.16 2.46 0.00 1.52
776 779 7.678690 GCCATCGAAAGCTAGCTGTTTTATTTA 60.679 37.037 20.16 0.84 0.00 1.40
785 794 9.358872 AGCTAGCTGTTTTATTTATTTTTGAGC 57.641 29.630 18.57 0.00 0.00 4.26
863 872 8.150296 TGTCATATGAAGTGAGTGAAAAGAGAA 58.850 33.333 7.07 0.00 0.00 2.87
910 919 2.240279 GCTTCGCCTATCTCCTCCTAA 58.760 52.381 0.00 0.00 0.00 2.69
920 929 5.247337 CCTATCTCCTCCTAACTTCCATTCC 59.753 48.000 0.00 0.00 0.00 3.01
1134 1155 4.615795 CGCCCCCTCCCGGATCTA 62.616 72.222 0.73 0.00 0.00 1.98
1158 1179 1.227089 CGTCCATGCTCCTTCTCCG 60.227 63.158 0.00 0.00 0.00 4.63
1236 1257 1.211181 GCCTCGCGTATCGGTTTACC 61.211 60.000 5.77 0.00 39.05 2.85
1270 1291 1.933853 GCTAGTTTCGTTCGCATCCAT 59.066 47.619 0.00 0.00 0.00 3.41
1282 1303 5.179368 CGTTCGCATCCATATTAATGAACCT 59.821 40.000 0.00 0.00 34.84 3.50
1299 1320 5.245531 TGAACCTAAATGAGTAGGCAACAG 58.754 41.667 0.00 0.00 44.05 3.16
1307 1328 1.734465 GAGTAGGCAACAGCACATGTC 59.266 52.381 0.00 0.00 43.00 3.06
1334 1386 7.653713 CACCTACTGCCTCAAATTACATAGTAG 59.346 40.741 0.00 0.00 37.29 2.57
1335 1387 6.647067 CCTACTGCCTCAAATTACATAGTAGC 59.353 42.308 0.00 0.00 36.61 3.58
1336 1388 6.240549 ACTGCCTCAAATTACATAGTAGCT 57.759 37.500 0.00 0.00 0.00 3.32
1387 1439 2.600470 TGCAAGGCCTGAAAACAAAG 57.400 45.000 5.69 0.00 0.00 2.77
1439 1495 6.899393 TGCAGTTTAAGACAAAATCATCCT 57.101 33.333 0.00 0.00 0.00 3.24
1466 1522 3.181497 ACAAATGCATCTGCCGATGTTAC 60.181 43.478 17.95 4.05 46.96 2.50
1467 1523 1.220529 ATGCATCTGCCGATGTTACG 58.779 50.000 17.95 0.00 46.96 3.18
1481 1537 6.564125 GCCGATGTTACGATTTTCCTCAATAG 60.564 42.308 0.00 0.00 35.09 1.73
1483 1539 7.337718 CGATGTTACGATTTTCCTCAATAGTG 58.662 38.462 0.00 0.00 35.09 2.74
1496 1552 6.295249 TCCTCAATAGTGAATCACAACACAA 58.705 36.000 16.38 0.00 39.18 3.33
1510 1566 5.527214 TCACAACACAACATACCTTCAAGAG 59.473 40.000 0.00 0.00 0.00 2.85
1516 1572 8.324163 ACACAACATACCTTCAAGAGAATAAC 57.676 34.615 0.00 0.00 32.31 1.89
1519 1575 9.520515 ACAACATACCTTCAAGAGAATAACAAT 57.479 29.630 0.00 0.00 32.31 2.71
1525 1581 8.794335 ACCTTCAAGAGAATAACAATTACTCC 57.206 34.615 0.00 0.00 32.31 3.85
1526 1582 7.829706 ACCTTCAAGAGAATAACAATTACTCCC 59.170 37.037 0.00 0.00 32.31 4.30
1528 1584 9.103861 CTTCAAGAGAATAACAATTACTCCCTC 57.896 37.037 0.00 0.00 32.31 4.30
1529 1585 8.380742 TCAAGAGAATAACAATTACTCCCTCT 57.619 34.615 0.00 0.00 0.00 3.69
1530 1586 8.260818 TCAAGAGAATAACAATTACTCCCTCTG 58.739 37.037 0.00 0.00 0.00 3.35
1531 1587 7.741554 AGAGAATAACAATTACTCCCTCTGT 57.258 36.000 0.00 0.00 0.00 3.41
1532 1588 8.840200 AGAGAATAACAATTACTCCCTCTGTA 57.160 34.615 0.00 0.00 0.00 2.74
1533 1589 9.268282 AGAGAATAACAATTACTCCCTCTGTAA 57.732 33.333 0.00 0.00 34.87 2.41
1534 1590 9.886132 GAGAATAACAATTACTCCCTCTGTAAA 57.114 33.333 0.00 0.00 34.20 2.01
1563 1619 7.700022 ACAAGACCGTTTAGATTACTAGAGT 57.300 36.000 0.00 0.00 0.00 3.24
1564 1620 8.798859 ACAAGACCGTTTAGATTACTAGAGTA 57.201 34.615 0.00 0.00 0.00 2.59
1565 1621 8.891720 ACAAGACCGTTTAGATTACTAGAGTAG 58.108 37.037 0.00 0.00 0.00 2.57
1566 1622 8.891720 CAAGACCGTTTAGATTACTAGAGTAGT 58.108 37.037 0.00 0.00 42.68 2.73
1567 1623 8.436046 AGACCGTTTAGATTACTAGAGTAGTG 57.564 38.462 0.00 0.00 39.81 2.74
1568 1624 8.263640 AGACCGTTTAGATTACTAGAGTAGTGA 58.736 37.037 0.00 0.00 39.81 3.41
1569 1625 8.977267 ACCGTTTAGATTACTAGAGTAGTGAT 57.023 34.615 0.00 0.00 39.81 3.06
1570 1626 9.054922 ACCGTTTAGATTACTAGAGTAGTGATC 57.945 37.037 9.69 9.69 46.38 2.92
1612 1668 5.585500 TTACAGATGAAGTACAACGCAAC 57.415 39.130 0.00 0.00 0.00 4.17
1627 1683 1.597027 CAACGAGAAAGTGCGGGGT 60.597 57.895 0.00 0.00 0.00 4.95
1628 1684 1.147600 AACGAGAAAGTGCGGGGTT 59.852 52.632 0.00 0.00 0.00 4.11
1638 1695 4.674281 AAGTGCGGGGTTTGAAAAATTA 57.326 36.364 0.00 0.00 0.00 1.40
1677 1734 6.381801 CCACTGTACTCATTGGCTTTAAAAG 58.618 40.000 0.00 0.00 37.52 2.27
1685 1742 7.203218 ACTCATTGGCTTTAAAAGACTTTCAC 58.797 34.615 0.00 0.00 37.45 3.18
1686 1743 7.106439 TCATTGGCTTTAAAAGACTTTCACA 57.894 32.000 0.00 0.00 37.45 3.58
1689 1746 6.463995 TGGCTTTAAAAGACTTTCACATGT 57.536 33.333 0.00 0.00 37.45 3.21
1742 1799 1.849039 AGCAGGACTTTAGCATCCCAT 59.151 47.619 0.00 0.00 35.38 4.00
1747 1804 6.003950 GCAGGACTTTAGCATCCCATAATAA 58.996 40.000 0.00 0.00 35.38 1.40
1748 1805 6.660949 GCAGGACTTTAGCATCCCATAATAAT 59.339 38.462 0.00 0.00 35.38 1.28
1807 1887 5.179368 TCAAGGTATCTTCTTTGTGAAAGCG 59.821 40.000 0.00 0.00 38.39 4.68
1940 2026 0.396811 AAGTTGGAGTCCCCACTTCG 59.603 55.000 15.25 0.00 46.62 3.79
1981 2067 8.506140 TCACTCTTTTCAATTTTCTAAATGCG 57.494 30.769 0.00 0.00 0.00 4.73
2025 2111 3.711190 TGGAGCATCACCATGTACACTAT 59.289 43.478 0.00 0.00 36.25 2.12
2042 2128 6.388435 ACACTATCCTATTCTTGTCGGTAC 57.612 41.667 0.00 0.00 0.00 3.34
2045 2131 6.262496 CACTATCCTATTCTTGTCGGTACTCA 59.738 42.308 0.00 0.00 0.00 3.41
2102 2188 5.104735 GCCCTCATAGAATTCCATAGTAGGG 60.105 48.000 17.00 17.00 42.39 3.53
2104 2190 5.104735 CCTCATAGAATTCCATAGTAGGGGC 60.105 48.000 0.65 0.00 0.00 5.80
2261 2347 0.251341 AGGAAGGGATGTGTGGTTGC 60.251 55.000 0.00 0.00 0.00 4.17
2262 2348 0.539438 GGAAGGGATGTGTGGTTGCA 60.539 55.000 0.00 0.00 0.00 4.08
2277 2363 3.400439 TGCATGTCTCAGTGTGCAA 57.600 47.368 3.08 0.00 43.83 4.08
2398 2484 4.222810 ACACTCAGTATGGTTAGTGCATCA 59.777 41.667 0.00 0.00 40.82 3.07
2456 2542 2.493278 GTTCTACTGCATGCCCACATTT 59.507 45.455 16.68 0.00 32.87 2.32
2539 2625 4.468765 ACTCATCATCTCCTGTTGTCTG 57.531 45.455 0.00 0.00 0.00 3.51
2571 2657 8.821686 TGTCTCTCATCTCTTCTTTTCTCTAT 57.178 34.615 0.00 0.00 0.00 1.98
2660 2746 5.683859 CATACTTCTTGTGCTTCAGTGTTC 58.316 41.667 0.00 0.00 0.00 3.18
2811 2897 0.685097 TTACAGACAGCACTGGGGAC 59.315 55.000 2.21 0.00 41.59 4.46
2828 2914 2.290323 GGGACAAGGCAAGCTTTCTCTA 60.290 50.000 0.00 0.00 0.00 2.43
2829 2915 3.412386 GGACAAGGCAAGCTTTCTCTAA 58.588 45.455 0.00 0.00 0.00 2.10
2830 2916 4.013050 GGACAAGGCAAGCTTTCTCTAAT 58.987 43.478 0.00 0.00 0.00 1.73
2831 2917 5.186198 GGACAAGGCAAGCTTTCTCTAATA 58.814 41.667 0.00 0.00 0.00 0.98
2893 2979 3.565307 TGCTTTATCCATTTAGGCAGGG 58.435 45.455 0.00 0.00 37.29 4.45
2894 2980 2.297315 GCTTTATCCATTTAGGCAGGGC 59.703 50.000 0.00 0.00 37.29 5.19
3064 3152 4.458295 GCCATGGAATCAATGAGACTATGG 59.542 45.833 18.40 20.99 36.51 2.74
3084 3173 6.759497 ATGGAAGTTTCTTATTTTCCCTCG 57.241 37.500 0.14 0.00 38.62 4.63
3086 3175 6.481643 TGGAAGTTTCTTATTTTCCCTCGAT 58.518 36.000 0.00 0.00 38.62 3.59
3087 3176 6.374333 TGGAAGTTTCTTATTTTCCCTCGATG 59.626 38.462 0.00 0.00 38.62 3.84
3178 3268 4.965119 ATTGTTAGCCGAAATGTCCTTC 57.035 40.909 0.00 0.00 0.00 3.46
3206 3296 3.069289 TGCAAGTAGATTCAGTGCACTG 58.931 45.455 36.07 36.07 40.14 3.66
3430 3520 3.491342 GAACCAAAGAAAGAAGAGGCCT 58.509 45.455 3.86 3.86 0.00 5.19
3524 3615 1.576421 GCCAGTCAGCTTGGTTTCG 59.424 57.895 4.86 0.00 0.00 3.46
3608 3699 0.960286 TGTGTGTGGATGTGGCAATG 59.040 50.000 0.00 0.00 0.00 2.82
3611 3702 1.255882 GTGTGGATGTGGCAATGGAA 58.744 50.000 0.00 0.00 0.00 3.53
3624 3715 2.412770 GCAATGGAAAAACTGGCGATTG 59.587 45.455 0.00 0.00 0.00 2.67
3696 3788 1.026182 TGCGTGGATGTTGAGATGCC 61.026 55.000 0.00 0.00 0.00 4.40
3761 3922 5.250200 ACATGCCCGTGTTCTTTTCTTATA 58.750 37.500 0.00 0.00 0.00 0.98
3890 4084 1.435515 GCCTGACAGCCTAGACTCG 59.564 63.158 0.00 0.00 0.00 4.18
3923 4117 2.129555 GAGCTGGACAAGGGCTCCAA 62.130 60.000 0.00 0.00 44.46 3.53
4022 4216 4.429108 CAAACACACCCTAAAACAGGTTG 58.571 43.478 0.00 0.00 43.80 3.77
4023 4217 2.028876 ACACACCCTAAAACAGGTTGC 58.971 47.619 0.00 0.00 40.49 4.17
4024 4218 1.339929 CACACCCTAAAACAGGTTGCC 59.660 52.381 0.00 0.00 40.49 4.52
4025 4219 0.596082 CACCCTAAAACAGGTTGCCG 59.404 55.000 0.00 0.00 43.80 5.69
4026 4220 1.176619 ACCCTAAAACAGGTTGCCGC 61.177 55.000 0.00 0.00 43.80 6.53
4027 4221 1.584495 CCTAAAACAGGTTGCCGCC 59.416 57.895 0.00 0.00 39.91 6.13
4028 4222 1.175983 CCTAAAACAGGTTGCCGCCA 61.176 55.000 0.00 0.00 39.91 5.69
4029 4223 0.887933 CTAAAACAGGTTGCCGCCAT 59.112 50.000 0.00 0.00 0.00 4.40
4030 4224 0.600557 TAAAACAGGTTGCCGCCATG 59.399 50.000 0.00 0.00 0.00 3.66
4031 4225 1.112315 AAAACAGGTTGCCGCCATGA 61.112 50.000 0.00 0.00 0.00 3.07
4046 4240 3.379372 CGCCATGATGGAAAAGAAGATGT 59.621 43.478 17.22 0.00 40.96 3.06
4083 4277 0.883833 GAAGTTGGGCCACTGACATG 59.116 55.000 5.23 0.00 0.00 3.21
4102 4296 1.082019 TGGGCCCACCTATCAGTGA 59.918 57.895 24.45 0.00 40.34 3.41
4107 4301 0.833287 CCCACCTATCAGTGACCCAG 59.167 60.000 0.00 0.00 40.34 4.45
4135 4329 3.652687 CAGTATGCCAGGGGAGCT 58.347 61.111 0.00 0.00 0.00 4.09
4136 4330 1.918253 CAGTATGCCAGGGGAGCTT 59.082 57.895 0.00 0.00 0.00 3.74
4137 4331 0.465097 CAGTATGCCAGGGGAGCTTG 60.465 60.000 0.00 0.00 0.00 4.01
4138 4332 0.621571 AGTATGCCAGGGGAGCTTGA 60.622 55.000 0.00 0.00 0.00 3.02
4139 4333 0.179034 GTATGCCAGGGGAGCTTGAG 60.179 60.000 0.00 0.00 0.00 3.02
4140 4334 0.621571 TATGCCAGGGGAGCTTGAGT 60.622 55.000 0.00 0.00 0.00 3.41
4141 4335 1.919600 ATGCCAGGGGAGCTTGAGTC 61.920 60.000 0.00 0.00 0.00 3.36
4142 4336 2.993853 CCAGGGGAGCTTGAGTCC 59.006 66.667 0.00 0.00 0.00 3.85
4143 4337 2.581354 CAGGGGAGCTTGAGTCCG 59.419 66.667 0.00 0.00 34.56 4.79
4144 4338 2.120718 AGGGGAGCTTGAGTCCGT 59.879 61.111 0.00 0.00 34.56 4.69
4145 4339 1.985116 AGGGGAGCTTGAGTCCGTC 60.985 63.158 0.00 0.00 34.56 4.79
4146 4340 1.985116 GGGGAGCTTGAGTCCGTCT 60.985 63.158 0.00 0.00 34.56 4.18
4147 4341 1.513622 GGGAGCTTGAGTCCGTCTC 59.486 63.158 0.00 0.00 43.03 3.36
4148 4342 1.137825 GGAGCTTGAGTCCGTCTCG 59.862 63.158 0.00 0.00 45.46 4.04
4149 4343 1.306642 GGAGCTTGAGTCCGTCTCGA 61.307 60.000 0.00 0.00 45.46 4.04
4150 4344 0.522180 GAGCTTGAGTCCGTCTCGAA 59.478 55.000 0.00 0.00 45.46 3.71
4151 4345 1.133407 GAGCTTGAGTCCGTCTCGAAT 59.867 52.381 0.00 0.00 45.46 3.34
4152 4346 2.355132 GAGCTTGAGTCCGTCTCGAATA 59.645 50.000 0.00 0.00 45.46 1.75
4153 4347 2.753452 AGCTTGAGTCCGTCTCGAATAA 59.247 45.455 0.00 0.00 45.46 1.40
4154 4348 2.853003 GCTTGAGTCCGTCTCGAATAAC 59.147 50.000 0.00 0.00 45.46 1.89
4155 4349 3.427773 GCTTGAGTCCGTCTCGAATAACT 60.428 47.826 0.00 0.00 45.46 2.24
4156 4350 4.201891 GCTTGAGTCCGTCTCGAATAACTA 60.202 45.833 0.00 0.00 45.46 2.24
4157 4351 5.505985 GCTTGAGTCCGTCTCGAATAACTAT 60.506 44.000 0.00 0.00 45.46 2.12
4158 4352 6.446781 TTGAGTCCGTCTCGAATAACTATT 57.553 37.500 0.00 0.00 45.46 1.73
4159 4353 6.057627 TGAGTCCGTCTCGAATAACTATTC 57.942 41.667 0.14 0.14 45.46 1.75
4160 4354 5.821470 TGAGTCCGTCTCGAATAACTATTCT 59.179 40.000 7.64 0.00 45.46 2.40
4161 4355 6.988580 TGAGTCCGTCTCGAATAACTATTCTA 59.011 38.462 7.64 0.00 45.46 2.10
4162 4356 7.660617 TGAGTCCGTCTCGAATAACTATTCTAT 59.339 37.037 7.64 0.00 45.46 1.98
4163 4357 9.149225 GAGTCCGTCTCGAATAACTATTCTATA 57.851 37.037 7.64 0.00 39.85 1.31
4164 4358 9.153721 AGTCCGTCTCGAATAACTATTCTATAG 57.846 37.037 7.64 0.00 39.85 1.31
4165 4359 9.149225 GTCCGTCTCGAATAACTATTCTATAGA 57.851 37.037 0.00 0.00 39.85 1.98
4166 4360 9.149225 TCCGTCTCGAATAACTATTCTATAGAC 57.851 37.037 0.67 16.75 39.85 2.59
4168 4362 8.646356 CGTCTCGAATAACTATTCTATAGACGT 58.354 37.037 26.67 0.00 46.33 4.34
4169 4363 9.743937 GTCTCGAATAACTATTCTATAGACGTG 57.256 37.037 0.67 1.22 39.85 4.49
4170 4364 8.933807 TCTCGAATAACTATTCTATAGACGTGG 58.066 37.037 0.67 0.00 39.85 4.94
4171 4365 8.037382 TCGAATAACTATTCTATAGACGTGGG 57.963 38.462 0.67 0.00 39.85 4.61
4172 4366 6.746364 CGAATAACTATTCTATAGACGTGGGC 59.254 42.308 0.67 0.00 39.85 5.36
4173 4367 7.534723 AATAACTATTCTATAGACGTGGGCA 57.465 36.000 0.67 0.00 0.00 5.36
4174 4368 7.719871 ATAACTATTCTATAGACGTGGGCAT 57.280 36.000 0.67 0.00 0.00 4.40
4175 4369 6.420913 AACTATTCTATAGACGTGGGCATT 57.579 37.500 0.67 0.00 0.00 3.56
4176 4370 6.420913 ACTATTCTATAGACGTGGGCATTT 57.579 37.500 0.67 0.00 0.00 2.32
4177 4371 6.456501 ACTATTCTATAGACGTGGGCATTTC 58.543 40.000 0.67 0.00 0.00 2.17
4178 4372 5.552870 ATTCTATAGACGTGGGCATTTCT 57.447 39.130 0.67 0.00 0.00 2.52
4179 4373 5.353394 TTCTATAGACGTGGGCATTTCTT 57.647 39.130 0.67 0.00 0.00 2.52
4180 4374 4.693283 TCTATAGACGTGGGCATTTCTTG 58.307 43.478 0.00 0.00 0.00 3.02
4181 4375 2.107950 TAGACGTGGGCATTTCTTGG 57.892 50.000 0.00 0.00 0.00 3.61
4182 4376 0.609131 AGACGTGGGCATTTCTTGGG 60.609 55.000 0.00 0.00 0.00 4.12
4183 4377 0.893727 GACGTGGGCATTTCTTGGGT 60.894 55.000 0.00 0.00 0.00 4.51
4184 4378 0.893727 ACGTGGGCATTTCTTGGGTC 60.894 55.000 0.00 0.00 0.00 4.46
4185 4379 0.609131 CGTGGGCATTTCTTGGGTCT 60.609 55.000 0.00 0.00 0.00 3.85
4186 4380 0.890683 GTGGGCATTTCTTGGGTCTG 59.109 55.000 0.00 0.00 0.00 3.51
4187 4381 0.251742 TGGGCATTTCTTGGGTCTGG 60.252 55.000 0.00 0.00 0.00 3.86
4188 4382 1.607801 GGGCATTTCTTGGGTCTGGC 61.608 60.000 0.00 0.00 0.00 4.85
4189 4383 0.613012 GGCATTTCTTGGGTCTGGCT 60.613 55.000 0.00 0.00 0.00 4.75
4190 4384 1.260544 GCATTTCTTGGGTCTGGCTT 58.739 50.000 0.00 0.00 0.00 4.35
4191 4385 1.620323 GCATTTCTTGGGTCTGGCTTT 59.380 47.619 0.00 0.00 0.00 3.51
4192 4386 2.037641 GCATTTCTTGGGTCTGGCTTTT 59.962 45.455 0.00 0.00 0.00 2.27
4193 4387 3.494924 GCATTTCTTGGGTCTGGCTTTTT 60.495 43.478 0.00 0.00 0.00 1.94
4212 4406 3.363341 TTTGACCGGACATTGAAAAGC 57.637 42.857 9.46 0.00 0.00 3.51
4213 4407 2.270352 TGACCGGACATTGAAAAGCT 57.730 45.000 9.46 0.00 0.00 3.74
4214 4408 2.151202 TGACCGGACATTGAAAAGCTC 58.849 47.619 9.46 0.00 0.00 4.09
4215 4409 2.151202 GACCGGACATTGAAAAGCTCA 58.849 47.619 9.46 0.00 0.00 4.26
4217 4411 2.293399 ACCGGACATTGAAAAGCTCAAC 59.707 45.455 9.46 0.00 46.80 3.18
4218 4412 2.351738 CCGGACATTGAAAAGCTCAACC 60.352 50.000 0.00 0.00 46.80 3.77
4219 4413 2.554032 CGGACATTGAAAAGCTCAACCT 59.446 45.455 0.00 0.00 46.80 3.50
4220 4414 3.365364 CGGACATTGAAAAGCTCAACCTC 60.365 47.826 0.00 0.00 46.80 3.85
4221 4415 3.823304 GGACATTGAAAAGCTCAACCTCT 59.177 43.478 0.00 0.00 46.80 3.69
4222 4416 5.003804 GGACATTGAAAAGCTCAACCTCTA 58.996 41.667 0.00 0.00 46.80 2.43
4223 4417 5.473504 GGACATTGAAAAGCTCAACCTCTAA 59.526 40.000 0.00 0.00 46.80 2.10
4224 4418 6.348868 GGACATTGAAAAGCTCAACCTCTAAG 60.349 42.308 0.00 0.00 46.80 2.18
4225 4419 6.064717 ACATTGAAAAGCTCAACCTCTAAGT 58.935 36.000 0.00 0.00 46.80 2.24
4226 4420 6.205658 ACATTGAAAAGCTCAACCTCTAAGTC 59.794 38.462 0.00 0.00 46.80 3.01
4227 4421 5.290493 TGAAAAGCTCAACCTCTAAGTCA 57.710 39.130 0.00 0.00 0.00 3.41
4228 4422 5.300752 TGAAAAGCTCAACCTCTAAGTCAG 58.699 41.667 0.00 0.00 0.00 3.51
4229 4423 5.070446 TGAAAAGCTCAACCTCTAAGTCAGA 59.930 40.000 0.00 0.00 0.00 3.27
4230 4424 8.166606 TTGAAAAGCTCAACCTCTAAGTCAGAG 61.167 40.741 0.00 0.00 43.39 3.35
4238 4432 2.312390 CTCTAAGTCAGAGCCTACCCC 58.688 57.143 0.00 0.00 44.34 4.95
4239 4433 1.644337 TCTAAGTCAGAGCCTACCCCA 59.356 52.381 0.00 0.00 0.00 4.96
4240 4434 2.043939 TCTAAGTCAGAGCCTACCCCAA 59.956 50.000 0.00 0.00 0.00 4.12
4241 4435 0.984995 AAGTCAGAGCCTACCCCAAC 59.015 55.000 0.00 0.00 0.00 3.77
4242 4436 0.910088 AGTCAGAGCCTACCCCAACC 60.910 60.000 0.00 0.00 0.00 3.77
4243 4437 1.159905 TCAGAGCCTACCCCAACCA 59.840 57.895 0.00 0.00 0.00 3.67
4244 4438 0.474854 TCAGAGCCTACCCCAACCAA 60.475 55.000 0.00 0.00 0.00 3.67
4245 4439 0.404040 CAGAGCCTACCCCAACCAAA 59.596 55.000 0.00 0.00 0.00 3.28
4246 4440 1.005924 CAGAGCCTACCCCAACCAAAT 59.994 52.381 0.00 0.00 0.00 2.32
4247 4441 1.285078 AGAGCCTACCCCAACCAAATC 59.715 52.381 0.00 0.00 0.00 2.17
4248 4442 1.005450 GAGCCTACCCCAACCAAATCA 59.995 52.381 0.00 0.00 0.00 2.57
4279 4473 5.452078 TGCATCTTTTCTAGTTTGGTTGG 57.548 39.130 0.00 0.00 0.00 3.77
4286 4480 7.712797 TCTTTTCTAGTTTGGTTGGAATTCAC 58.287 34.615 7.93 0.00 0.00 3.18
4301 4495 5.945784 TGGAATTCACTGGTTCATCTTAAGG 59.054 40.000 7.93 0.00 0.00 2.69
4327 4521 7.172361 GGAATATTCCTCTTAGATGCAGAACAC 59.828 40.741 24.74 0.00 44.11 3.32
4337 4531 0.035317 TGCAGAACACGCTTGATCCT 59.965 50.000 0.00 0.00 0.00 3.24
4345 4539 2.086869 CACGCTTGATCCTCAACCAAT 58.913 47.619 0.00 0.00 32.21 3.16
4364 4558 8.349245 CAACCAATTTCTTAGTACATCAACACA 58.651 33.333 0.00 0.00 0.00 3.72
4380 4574 2.336554 CACAAGAAGTGGCGAATTGG 57.663 50.000 0.00 0.00 44.69 3.16
4381 4575 1.068333 CACAAGAAGTGGCGAATTGGG 60.068 52.381 0.00 0.00 44.69 4.12
4382 4576 0.527565 CAAGAAGTGGCGAATTGGGG 59.472 55.000 0.00 0.00 0.00 4.96
4383 4577 0.404040 AAGAAGTGGCGAATTGGGGA 59.596 50.000 0.00 0.00 0.00 4.81
4384 4578 0.625849 AGAAGTGGCGAATTGGGGAT 59.374 50.000 0.00 0.00 0.00 3.85
4385 4579 0.740737 GAAGTGGCGAATTGGGGATG 59.259 55.000 0.00 0.00 0.00 3.51
4386 4580 0.684153 AAGTGGCGAATTGGGGATGG 60.684 55.000 0.00 0.00 0.00 3.51
4387 4581 1.379843 GTGGCGAATTGGGGATGGT 60.380 57.895 0.00 0.00 0.00 3.55
4388 4582 0.106918 GTGGCGAATTGGGGATGGTA 60.107 55.000 0.00 0.00 0.00 3.25
4389 4583 0.106918 TGGCGAATTGGGGATGGTAC 60.107 55.000 0.00 0.00 0.00 3.34
4390 4584 0.182775 GGCGAATTGGGGATGGTACT 59.817 55.000 0.00 0.00 0.00 2.73
4391 4585 1.418637 GGCGAATTGGGGATGGTACTA 59.581 52.381 0.00 0.00 0.00 1.82
4392 4586 2.490991 GCGAATTGGGGATGGTACTAC 58.509 52.381 0.00 0.00 0.00 2.73
4393 4587 2.809299 GCGAATTGGGGATGGTACTACC 60.809 54.545 0.00 0.00 39.22 3.18
4394 4588 2.704065 CGAATTGGGGATGGTACTACCT 59.296 50.000 6.79 0.00 39.58 3.08
4395 4589 3.244112 CGAATTGGGGATGGTACTACCTC 60.244 52.174 6.79 2.27 39.58 3.85
4396 4590 2.953093 TTGGGGATGGTACTACCTCA 57.047 50.000 6.79 0.00 39.58 3.86
4397 4591 2.471815 TGGGGATGGTACTACCTCAG 57.528 55.000 6.79 0.00 39.58 3.35
4398 4592 1.649633 TGGGGATGGTACTACCTCAGT 59.350 52.381 6.79 0.00 39.58 3.41
4399 4593 2.040178 GGGGATGGTACTACCTCAGTG 58.960 57.143 6.79 0.00 39.58 3.66
4400 4594 2.358932 GGGGATGGTACTACCTCAGTGA 60.359 54.545 6.79 0.00 39.58 3.41
4401 4595 3.371965 GGGATGGTACTACCTCAGTGAA 58.628 50.000 6.79 0.00 39.58 3.18
4402 4596 3.773119 GGGATGGTACTACCTCAGTGAAA 59.227 47.826 6.79 0.00 39.58 2.69
4403 4597 4.409247 GGGATGGTACTACCTCAGTGAAAT 59.591 45.833 6.79 0.00 39.58 2.17
4404 4598 5.104485 GGGATGGTACTACCTCAGTGAAATT 60.104 44.000 6.79 0.00 39.58 1.82
4405 4599 5.817816 GGATGGTACTACCTCAGTGAAATTG 59.182 44.000 6.79 0.00 39.58 2.32
4406 4600 4.575885 TGGTACTACCTCAGTGAAATTGC 58.424 43.478 6.79 0.00 39.58 3.56
4407 4601 3.617263 GGTACTACCTCAGTGAAATTGCG 59.383 47.826 0.00 0.00 38.24 4.85
4408 4602 2.699954 ACTACCTCAGTGAAATTGCGG 58.300 47.619 0.00 0.00 35.62 5.69
4409 4603 2.009774 CTACCTCAGTGAAATTGCGGG 58.990 52.381 0.00 0.00 32.02 6.13
4410 4604 0.400213 ACCTCAGTGAAATTGCGGGA 59.600 50.000 0.00 0.00 32.02 5.14
4411 4605 1.202879 ACCTCAGTGAAATTGCGGGAA 60.203 47.619 0.00 0.00 32.02 3.97
4412 4606 1.470098 CCTCAGTGAAATTGCGGGAAG 59.530 52.381 0.00 0.00 0.00 3.46
4413 4607 2.426522 CTCAGTGAAATTGCGGGAAGA 58.573 47.619 0.00 0.00 0.00 2.87
4414 4608 3.012518 CTCAGTGAAATTGCGGGAAGAT 58.987 45.455 0.00 0.00 0.00 2.40
4415 4609 2.749076 TCAGTGAAATTGCGGGAAGATG 59.251 45.455 0.00 0.00 0.00 2.90
4416 4610 2.094675 AGTGAAATTGCGGGAAGATGG 58.905 47.619 0.00 0.00 0.00 3.51
4417 4611 1.134946 GTGAAATTGCGGGAAGATGGG 59.865 52.381 0.00 0.00 0.00 4.00
4418 4612 1.272425 TGAAATTGCGGGAAGATGGGT 60.272 47.619 0.00 0.00 0.00 4.51
4419 4613 2.025793 TGAAATTGCGGGAAGATGGGTA 60.026 45.455 0.00 0.00 0.00 3.69
4420 4614 2.348411 AATTGCGGGAAGATGGGTAG 57.652 50.000 0.00 0.00 0.00 3.18
4421 4615 0.474184 ATTGCGGGAAGATGGGTAGG 59.526 55.000 0.00 0.00 0.00 3.18
4422 4616 0.912487 TTGCGGGAAGATGGGTAGGT 60.912 55.000 0.00 0.00 0.00 3.08
4423 4617 1.146263 GCGGGAAGATGGGTAGGTG 59.854 63.158 0.00 0.00 0.00 4.00
4424 4618 1.830145 CGGGAAGATGGGTAGGTGG 59.170 63.158 0.00 0.00 0.00 4.61
4425 4619 1.696097 CGGGAAGATGGGTAGGTGGG 61.696 65.000 0.00 0.00 0.00 4.61
4426 4620 1.353394 GGGAAGATGGGTAGGTGGGG 61.353 65.000 0.00 0.00 0.00 4.96
4427 4621 1.532238 GAAGATGGGTAGGTGGGGC 59.468 63.158 0.00 0.00 0.00 5.80
4428 4622 1.996070 GAAGATGGGTAGGTGGGGCC 61.996 65.000 0.00 0.00 37.58 5.80
4430 4624 2.368329 ATGGGTAGGTGGGGCCTC 60.368 66.667 0.84 0.00 46.96 4.70
4431 4625 2.916553 GATGGGTAGGTGGGGCCTCT 62.917 65.000 3.07 1.41 46.96 3.69
4432 4626 2.768769 GGGTAGGTGGGGCCTCTC 60.769 72.222 3.07 0.00 46.96 3.20
4433 4627 2.040606 GGTAGGTGGGGCCTCTCA 59.959 66.667 3.07 0.00 46.96 3.27
4434 4628 1.615424 GGTAGGTGGGGCCTCTCAA 60.615 63.158 3.07 0.00 46.96 3.02
4435 4629 1.602771 GTAGGTGGGGCCTCTCAAC 59.397 63.158 3.07 2.35 46.96 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.077184 ATCCAAGCGCCGAACGGA 62.077 61.111 17.63 3.20 43.93 4.69
14 15 3.564027 GATCCAAGCGCCGAACGG 61.564 66.667 2.29 9.00 43.93 4.44
16 17 0.451783 ATTTGATCCAAGCGCCGAAC 59.548 50.000 2.29 0.00 0.00 3.95
17 18 0.732571 GATTTGATCCAAGCGCCGAA 59.267 50.000 2.29 0.00 0.00 4.30
18 19 0.107703 AGATTTGATCCAAGCGCCGA 60.108 50.000 2.29 0.00 0.00 5.54
19 20 0.734889 AAGATTTGATCCAAGCGCCG 59.265 50.000 2.29 0.00 0.00 6.46
20 21 1.066152 GGAAGATTTGATCCAAGCGCC 59.934 52.381 2.29 0.00 35.71 6.53
21 22 1.268234 CGGAAGATTTGATCCAAGCGC 60.268 52.381 0.00 0.00 35.34 5.92
22 23 1.268234 GCGGAAGATTTGATCCAAGCG 60.268 52.381 0.00 0.00 35.34 4.68
23 24 1.268234 CGCGGAAGATTTGATCCAAGC 60.268 52.381 0.00 0.00 35.34 4.01
24 25 2.279741 TCGCGGAAGATTTGATCCAAG 58.720 47.619 6.13 0.00 35.34 3.61
25 26 2.394930 TCGCGGAAGATTTGATCCAA 57.605 45.000 6.13 0.00 35.34 3.53
26 27 2.620251 ATCGCGGAAGATTTGATCCA 57.380 45.000 6.13 0.00 35.34 3.41
27 28 3.971032 AAATCGCGGAAGATTTGATCC 57.029 42.857 6.13 0.00 45.80 3.36
28 29 7.540362 GATTTAAATCGCGGAAGATTTGATC 57.460 36.000 12.27 9.23 46.61 2.92
43 44 2.408110 CGTACTCGCGGCGATTTAAATC 60.408 50.000 26.60 16.79 34.61 2.17
44 45 1.519758 CGTACTCGCGGCGATTTAAAT 59.480 47.619 26.60 9.68 34.61 1.40
45 46 0.915904 CGTACTCGCGGCGATTTAAA 59.084 50.000 26.60 2.28 34.61 1.52
46 47 0.098552 TCGTACTCGCGGCGATTTAA 59.901 50.000 26.60 8.68 34.61 1.52
47 48 0.589729 GTCGTACTCGCGGCGATTTA 60.590 55.000 26.60 16.67 37.00 1.40
48 49 1.870901 GTCGTACTCGCGGCGATTT 60.871 57.895 26.60 17.71 37.00 2.17
49 50 2.277756 GTCGTACTCGCGGCGATT 60.278 61.111 26.60 22.48 37.00 3.34
50 51 3.165670 GAGTCGTACTCGCGGCGAT 62.166 63.158 26.60 17.43 41.85 4.58
51 52 3.857854 GAGTCGTACTCGCGGCGA 61.858 66.667 24.84 24.84 41.85 5.54
52 53 4.883300 GGAGTCGTACTCGCGGCG 62.883 72.222 17.70 17.70 45.96 6.46
53 54 2.985486 GATGGAGTCGTACTCGCGGC 62.985 65.000 6.13 0.00 45.96 6.53
54 55 1.009900 GATGGAGTCGTACTCGCGG 60.010 63.158 6.13 0.00 45.96 6.46
55 56 0.098200 TTGATGGAGTCGTACTCGCG 59.902 55.000 0.00 0.00 45.96 5.87
56 57 1.132643 AGTTGATGGAGTCGTACTCGC 59.867 52.381 8.33 3.96 45.96 5.03
57 58 2.786854 CAGTTGATGGAGTCGTACTCG 58.213 52.381 8.33 0.00 45.96 4.18
58 59 2.531206 GCAGTTGATGGAGTCGTACTC 58.469 52.381 6.50 6.50 44.32 2.59
59 60 1.135373 CGCAGTTGATGGAGTCGTACT 60.135 52.381 0.00 0.00 0.00 2.73
60 61 1.269166 CGCAGTTGATGGAGTCGTAC 58.731 55.000 0.00 0.00 0.00 3.67
61 62 0.885879 ACGCAGTTGATGGAGTCGTA 59.114 50.000 0.00 0.00 37.78 3.43
62 63 1.666011 ACGCAGTTGATGGAGTCGT 59.334 52.632 0.00 0.00 37.78 4.34
63 64 4.578913 ACGCAGTTGATGGAGTCG 57.421 55.556 0.00 0.00 37.78 4.18
78 79 3.921081 CGGAAGCGTTACAAGAACG 57.079 52.632 5.50 5.50 45.56 3.95
91 92 2.540515 TCGAAGATTGCTAAGCGGAAG 58.459 47.619 0.00 0.00 0.00 3.46
92 93 2.665649 TCGAAGATTGCTAAGCGGAA 57.334 45.000 0.00 0.00 0.00 4.30
93 94 2.165641 TCTTCGAAGATTGCTAAGCGGA 59.834 45.455 23.74 0.00 35.04 5.54
94 95 2.540515 TCTTCGAAGATTGCTAAGCGG 58.459 47.619 23.74 0.00 35.04 5.52
95 96 3.603401 GCATCTTCGAAGATTGCTAAGCG 60.603 47.826 32.92 21.29 42.96 4.68
96 97 3.310774 TGCATCTTCGAAGATTGCTAAGC 59.689 43.478 35.34 31.48 42.96 3.09
97 98 5.670149 ATGCATCTTCGAAGATTGCTAAG 57.330 39.130 35.34 26.44 42.96 2.18
98 99 5.008019 GGAATGCATCTTCGAAGATTGCTAA 59.992 40.000 35.34 26.64 42.96 3.09
99 100 4.512944 GGAATGCATCTTCGAAGATTGCTA 59.487 41.667 35.34 28.23 42.96 3.49
100 101 3.314635 GGAATGCATCTTCGAAGATTGCT 59.685 43.478 35.34 26.64 42.96 3.91
101 102 3.549625 GGGAATGCATCTTCGAAGATTGC 60.550 47.826 32.75 32.75 42.96 3.56
102 103 3.881688 AGGGAATGCATCTTCGAAGATTG 59.118 43.478 32.92 26.90 42.96 2.67
103 104 4.133078 GAGGGAATGCATCTTCGAAGATT 58.867 43.478 32.92 21.83 42.96 2.40
104 105 3.390639 AGAGGGAATGCATCTTCGAAGAT 59.609 43.478 30.53 30.53 46.30 2.40
105 106 2.768527 AGAGGGAATGCATCTTCGAAGA 59.231 45.455 28.85 28.85 39.78 2.87
106 107 3.129871 GAGAGGGAATGCATCTTCGAAG 58.870 50.000 19.35 19.35 0.00 3.79
107 108 2.768527 AGAGAGGGAATGCATCTTCGAA 59.231 45.455 0.00 0.00 0.00 3.71
108 109 2.363680 GAGAGAGGGAATGCATCTTCGA 59.636 50.000 0.00 0.00 0.00 3.71
109 110 2.364970 AGAGAGAGGGAATGCATCTTCG 59.635 50.000 0.00 0.00 0.00 3.79
110 111 3.552684 CGAGAGAGAGGGAATGCATCTTC 60.553 52.174 0.00 0.00 0.00 2.87
111 112 2.364970 CGAGAGAGAGGGAATGCATCTT 59.635 50.000 0.00 0.00 0.00 2.40
112 113 1.962807 CGAGAGAGAGGGAATGCATCT 59.037 52.381 0.00 0.00 0.00 2.90
113 114 1.686052 ACGAGAGAGAGGGAATGCATC 59.314 52.381 0.00 0.00 0.00 3.91
114 115 1.786937 ACGAGAGAGAGGGAATGCAT 58.213 50.000 0.00 0.00 0.00 3.96
115 116 1.205655 CAACGAGAGAGAGGGAATGCA 59.794 52.381 0.00 0.00 0.00 3.96
116 117 1.933247 CAACGAGAGAGAGGGAATGC 58.067 55.000 0.00 0.00 0.00 3.56
117 118 1.480137 AGCAACGAGAGAGAGGGAATG 59.520 52.381 0.00 0.00 0.00 2.67
118 119 1.859302 AGCAACGAGAGAGAGGGAAT 58.141 50.000 0.00 0.00 0.00 3.01
119 120 2.370349 CTAGCAACGAGAGAGAGGGAA 58.630 52.381 0.00 0.00 0.00 3.97
120 121 2.019668 GCTAGCAACGAGAGAGAGGGA 61.020 57.143 10.63 0.00 0.00 4.20
121 122 0.383949 GCTAGCAACGAGAGAGAGGG 59.616 60.000 10.63 0.00 0.00 4.30
122 123 1.098869 TGCTAGCAACGAGAGAGAGG 58.901 55.000 16.84 0.00 0.00 3.69
123 124 2.618241 AGATGCTAGCAACGAGAGAGAG 59.382 50.000 23.54 0.00 0.00 3.20
124 125 2.649190 AGATGCTAGCAACGAGAGAGA 58.351 47.619 23.54 0.00 0.00 3.10
125 126 3.066621 AGAAGATGCTAGCAACGAGAGAG 59.933 47.826 23.54 0.00 0.00 3.20
126 127 3.020274 AGAAGATGCTAGCAACGAGAGA 58.980 45.455 23.54 0.00 0.00 3.10
127 128 3.435105 AGAAGATGCTAGCAACGAGAG 57.565 47.619 23.54 0.00 0.00 3.20
128 129 4.200092 TCTAGAAGATGCTAGCAACGAGA 58.800 43.478 23.54 18.90 38.17 4.04
129 130 4.560136 TCTAGAAGATGCTAGCAACGAG 57.440 45.455 23.54 17.15 38.17 4.18
130 131 5.067805 TCAATCTAGAAGATGCTAGCAACGA 59.932 40.000 23.54 11.47 38.17 3.85
131 132 5.284864 TCAATCTAGAAGATGCTAGCAACG 58.715 41.667 23.54 6.00 38.17 4.10
132 133 7.153985 AGATCAATCTAGAAGATGCTAGCAAC 58.846 38.462 23.54 19.83 38.17 4.17
133 134 7.300556 AGATCAATCTAGAAGATGCTAGCAA 57.699 36.000 23.54 5.32 38.17 3.91
134 135 6.914654 AGATCAATCTAGAAGATGCTAGCA 57.085 37.500 21.85 21.85 38.17 3.49
135 136 6.591062 CCAAGATCAATCTAGAAGATGCTAGC 59.409 42.308 8.10 8.10 38.17 3.42
136 137 7.599621 CACCAAGATCAATCTAGAAGATGCTAG 59.400 40.741 13.87 0.00 34.65 3.42
137 138 7.288621 TCACCAAGATCAATCTAGAAGATGCTA 59.711 37.037 13.87 0.00 34.65 3.49
138 139 6.099413 TCACCAAGATCAATCTAGAAGATGCT 59.901 38.462 13.87 9.05 34.65 3.79
139 140 6.202570 GTCACCAAGATCAATCTAGAAGATGC 59.797 42.308 13.87 7.44 34.65 3.91
140 141 7.224362 GTGTCACCAAGATCAATCTAGAAGATG 59.776 40.741 13.87 6.52 34.65 2.90
141 142 7.271511 GTGTCACCAAGATCAATCTAGAAGAT 58.728 38.462 9.97 9.97 36.28 2.40
142 143 6.625960 CGTGTCACCAAGATCAATCTAGAAGA 60.626 42.308 0.00 0.00 35.76 2.87
143 144 5.518128 CGTGTCACCAAGATCAATCTAGAAG 59.482 44.000 0.00 0.00 35.76 2.85
144 145 5.047306 ACGTGTCACCAAGATCAATCTAGAA 60.047 40.000 0.00 0.00 35.76 2.10
145 146 4.462834 ACGTGTCACCAAGATCAATCTAGA 59.537 41.667 0.00 0.00 35.76 2.43
146 147 4.748892 ACGTGTCACCAAGATCAATCTAG 58.251 43.478 0.00 0.00 35.76 2.43
147 148 4.801330 ACGTGTCACCAAGATCAATCTA 57.199 40.909 0.00 0.00 35.76 1.98
148 149 3.685139 ACGTGTCACCAAGATCAATCT 57.315 42.857 0.00 0.00 39.22 2.40
149 150 3.865745 CCTACGTGTCACCAAGATCAATC 59.134 47.826 0.00 0.00 0.00 2.67
150 151 3.513912 TCCTACGTGTCACCAAGATCAAT 59.486 43.478 0.00 0.00 0.00 2.57
151 152 2.894765 TCCTACGTGTCACCAAGATCAA 59.105 45.455 0.00 0.00 0.00 2.57
152 153 2.521126 TCCTACGTGTCACCAAGATCA 58.479 47.619 0.00 0.00 0.00 2.92
153 154 3.587797 TTCCTACGTGTCACCAAGATC 57.412 47.619 0.00 0.00 0.00 2.75
154 155 4.553330 ATTTCCTACGTGTCACCAAGAT 57.447 40.909 0.00 0.00 0.00 2.40
155 156 4.345859 AATTTCCTACGTGTCACCAAGA 57.654 40.909 0.00 0.00 0.00 3.02
156 157 5.432885 AAAATTTCCTACGTGTCACCAAG 57.567 39.130 0.00 0.00 0.00 3.61
157 158 5.357314 TCAAAAATTTCCTACGTGTCACCAA 59.643 36.000 0.00 0.00 0.00 3.67
158 159 4.882427 TCAAAAATTTCCTACGTGTCACCA 59.118 37.500 0.00 0.00 0.00 4.17
159 160 5.427036 TCAAAAATTTCCTACGTGTCACC 57.573 39.130 0.00 0.00 0.00 4.02
160 161 6.492254 AGTTCAAAAATTTCCTACGTGTCAC 58.508 36.000 0.00 0.00 0.00 3.67
161 162 6.687081 AGTTCAAAAATTTCCTACGTGTCA 57.313 33.333 0.00 0.00 0.00 3.58
162 163 6.795593 GCTAGTTCAAAAATTTCCTACGTGTC 59.204 38.462 0.00 0.00 0.00 3.67
163 164 6.565247 CGCTAGTTCAAAAATTTCCTACGTGT 60.565 38.462 0.00 0.00 0.00 4.49
164 165 5.788531 CGCTAGTTCAAAAATTTCCTACGTG 59.211 40.000 0.00 0.00 0.00 4.49
165 166 5.467735 ACGCTAGTTCAAAAATTTCCTACGT 59.532 36.000 0.00 0.00 0.00 3.57
166 167 5.923665 ACGCTAGTTCAAAAATTTCCTACG 58.076 37.500 0.00 0.00 0.00 3.51
167 168 6.087687 GCAACGCTAGTTCAAAAATTTCCTAC 59.912 38.462 0.00 0.00 38.79 3.18
168 169 6.146898 GCAACGCTAGTTCAAAAATTTCCTA 58.853 36.000 0.00 0.00 38.79 2.94
169 170 4.982295 GCAACGCTAGTTCAAAAATTTCCT 59.018 37.500 0.00 0.00 38.79 3.36
170 171 4.149922 GGCAACGCTAGTTCAAAAATTTCC 59.850 41.667 0.00 0.00 38.79 3.13
171 172 5.250667 GGCAACGCTAGTTCAAAAATTTC 57.749 39.130 0.00 0.00 38.79 2.17
208 209 1.454847 TTTGGTGGTGGTGCTGGAC 60.455 57.895 0.00 0.00 0.00 4.02
222 223 1.106944 ACGGTTCTTGGGTGCTTTGG 61.107 55.000 0.00 0.00 0.00 3.28
230 231 1.900545 GAGGAGGGACGGTTCTTGGG 61.901 65.000 0.00 0.00 0.00 4.12
241 242 2.461695 GTCTGTTGAGATGAGGAGGGA 58.538 52.381 0.00 0.00 0.00 4.20
253 254 0.533531 CAGCTGCAGTGGTCTGTTGA 60.534 55.000 16.64 0.00 43.05 3.18
255 256 1.895707 GCAGCTGCAGTGGTCTGTT 60.896 57.895 33.36 0.00 43.05 3.16
256 257 2.281345 GCAGCTGCAGTGGTCTGT 60.281 61.111 33.36 0.00 43.05 3.41
257 258 2.032223 AGCAGCTGCAGTGGTCTG 59.968 61.111 38.24 14.53 45.16 3.51
275 276 4.306600 GTTGCAAAGAACACAAATAGGGG 58.693 43.478 0.00 0.00 0.00 4.79
299 300 5.402270 GTGTTAAACTGAATGTTGATGGTGC 59.598 40.000 0.00 0.00 39.13 5.01
308 309 2.552315 CCGGCTGTGTTAAACTGAATGT 59.448 45.455 0.00 0.00 0.00 2.71
336 337 1.207089 CTGGTGACATGTGTATCCGGT 59.793 52.381 1.15 0.00 41.51 5.28
337 338 1.480545 TCTGGTGACATGTGTATCCGG 59.519 52.381 1.15 0.00 41.51 5.14
343 344 1.344438 ACACGATCTGGTGACATGTGT 59.656 47.619 1.15 0.29 40.38 3.72
350 351 1.888436 GCTCCCACACGATCTGGTGA 61.888 60.000 13.37 3.78 40.38 4.02
354 355 0.742281 CTTGGCTCCCACACGATCTG 60.742 60.000 0.00 0.00 30.78 2.90
422 423 5.079689 TCCACGCATCTGTTTATAAGACA 57.920 39.130 0.00 0.00 0.00 3.41
435 436 2.512515 GCCCACTCTCCACGCATC 60.513 66.667 0.00 0.00 0.00 3.91
449 450 2.436824 GAGGAGGAACGCAAGCCC 60.437 66.667 0.00 0.00 45.62 5.19
454 455 1.407299 CCATTCATGAGGAGGAACGCA 60.407 52.381 0.00 0.00 0.00 5.24
455 456 1.303309 CCATTCATGAGGAGGAACGC 58.697 55.000 0.00 0.00 0.00 4.84
456 457 1.134280 AGCCATTCATGAGGAGGAACG 60.134 52.381 12.69 0.00 0.00 3.95
457 458 2.725221 AGCCATTCATGAGGAGGAAC 57.275 50.000 12.69 0.00 0.00 3.62
480 483 2.969238 GATCTGGTGGGCGCGATG 60.969 66.667 12.10 0.00 0.00 3.84
498 501 1.101049 CAGTTGGTCACGCTTTGGGT 61.101 55.000 0.00 0.00 0.00 4.51
514 517 3.846588 AGTTCATGGAGGTTATGGTCAGT 59.153 43.478 0.00 0.00 0.00 3.41
515 518 4.080919 TCAGTTCATGGAGGTTATGGTCAG 60.081 45.833 0.00 0.00 0.00 3.51
516 519 3.843619 TCAGTTCATGGAGGTTATGGTCA 59.156 43.478 0.00 0.00 0.00 4.02
517 520 4.487714 TCAGTTCATGGAGGTTATGGTC 57.512 45.455 0.00 0.00 0.00 4.02
518 521 4.042809 TGTTCAGTTCATGGAGGTTATGGT 59.957 41.667 0.00 0.00 0.00 3.55
519 522 4.588899 TGTTCAGTTCATGGAGGTTATGG 58.411 43.478 0.00 0.00 0.00 2.74
520 523 6.764308 AATGTTCAGTTCATGGAGGTTATG 57.236 37.500 0.00 0.00 0.00 1.90
521 524 6.543831 GCTAATGTTCAGTTCATGGAGGTTAT 59.456 38.462 0.00 0.00 0.00 1.89
531 534 4.881273 ACACACTTGCTAATGTTCAGTTCA 59.119 37.500 0.00 0.00 0.00 3.18
568 571 9.595823 GAGACTACTAATGCTAAATTGTGGTTA 57.404 33.333 0.00 0.00 0.00 2.85
569 572 8.100791 TGAGACTACTAATGCTAAATTGTGGTT 58.899 33.333 0.00 0.00 0.00 3.67
570 573 7.620880 TGAGACTACTAATGCTAAATTGTGGT 58.379 34.615 0.00 0.00 0.00 4.16
571 574 8.668510 ATGAGACTACTAATGCTAAATTGTGG 57.331 34.615 0.00 0.00 0.00 4.17
572 575 8.483218 CGATGAGACTACTAATGCTAAATTGTG 58.517 37.037 0.00 0.00 0.00 3.33
627 630 2.358737 GTGTGTTGGCTCTCCGGG 60.359 66.667 0.00 0.00 34.14 5.73
634 637 3.758715 GGCAAAAAGTGTGTTGGCT 57.241 47.368 3.01 0.00 44.50 4.75
638 641 7.714377 TGATTTCAATATGGCAAAAAGTGTGTT 59.286 29.630 0.00 0.00 0.00 3.32
648 651 6.696583 CGCATTACTTGATTTCAATATGGCAA 59.303 34.615 0.00 0.00 35.02 4.52
659 662 4.323417 TGGAGACACGCATTACTTGATTT 58.677 39.130 0.00 0.00 33.40 2.17
689 692 0.670546 TCTGTAGAGTTGCAAGCGGC 60.671 55.000 0.00 0.00 45.13 6.53
690 693 2.015736 ATCTGTAGAGTTGCAAGCGG 57.984 50.000 0.00 0.00 0.00 5.52
691 694 3.119291 CCTATCTGTAGAGTTGCAAGCG 58.881 50.000 0.00 0.00 0.00 4.68
692 695 3.118592 ACCCTATCTGTAGAGTTGCAAGC 60.119 47.826 0.00 0.00 0.00 4.01
736 739 3.335356 ATGGCAGCCTCCTTCACCG 62.335 63.158 14.15 0.00 0.00 4.94
772 775 8.876275 ATCGTTATGCATGCTCAAAAATAAAT 57.124 26.923 20.33 2.05 0.00 1.40
776 779 6.864685 CCATATCGTTATGCATGCTCAAAAAT 59.135 34.615 20.33 5.16 34.94 1.82
785 794 2.349580 CCGAGCCATATCGTTATGCATG 59.650 50.000 10.16 0.00 41.12 4.06
856 865 2.043953 GGCCGGCCCATTCTCTTT 60.044 61.111 36.64 0.00 0.00 2.52
910 919 4.023291 GTCTCTCTCTCTGGAATGGAAGT 58.977 47.826 0.00 0.00 0.00 3.01
920 929 0.393673 TGCCTCCGTCTCTCTCTCTG 60.394 60.000 0.00 0.00 0.00 3.35
1134 1155 2.503356 AGAAGGAGCATGGACGAATCTT 59.497 45.455 0.00 0.00 0.00 2.40
1158 1179 0.321653 ATCTTGACCGAACAGCCACC 60.322 55.000 0.00 0.00 0.00 4.61
1229 1250 3.187842 GCGATCCCAATAATCGGTAAACC 59.812 47.826 7.52 0.00 44.71 3.27
1236 1257 4.090066 CGAAACTAGCGATCCCAATAATCG 59.910 45.833 1.36 1.36 46.71 3.34
1237 1258 4.989168 ACGAAACTAGCGATCCCAATAATC 59.011 41.667 0.00 0.00 0.00 1.75
1282 1303 4.014569 TGTGCTGTTGCCTACTCATTTA 57.985 40.909 0.00 0.00 38.71 1.40
1299 1320 1.026718 GGCAGTAGGTGGACATGTGC 61.027 60.000 10.90 10.90 0.00 4.57
1307 1328 3.950397 TGTAATTTGAGGCAGTAGGTGG 58.050 45.455 0.00 0.00 0.00 4.61
1334 1386 7.166473 CAGAATAATTTCGAAGGCATGTAAAGC 59.834 37.037 0.00 0.00 36.93 3.51
1335 1387 7.166473 GCAGAATAATTTCGAAGGCATGTAAAG 59.834 37.037 0.00 0.00 36.93 1.85
1336 1388 6.972328 GCAGAATAATTTCGAAGGCATGTAAA 59.028 34.615 0.00 0.00 36.93 2.01
1387 1439 5.507985 CCAAGAGGAAGGAACATTTGTGTTC 60.508 44.000 11.73 11.73 41.42 3.18
1439 1495 1.468127 CGGCAGATGCATTTGTGTACA 59.532 47.619 17.65 0.00 44.36 2.90
1466 1522 7.307493 TGTGATTCACTATTGAGGAAAATCG 57.693 36.000 17.26 0.00 35.11 3.34
1467 1523 8.514594 TGTTGTGATTCACTATTGAGGAAAATC 58.485 33.333 17.26 0.00 35.11 2.17
1481 1537 5.689383 AGGTATGTTGTGTTGTGATTCAC 57.311 39.130 9.93 9.93 35.43 3.18
1483 1539 6.312399 TGAAGGTATGTTGTGTTGTGATTC 57.688 37.500 0.00 0.00 0.00 2.52
1537 1593 9.406113 ACTCTAGTAATCTAAACGGTCTTGTAT 57.594 33.333 0.00 0.00 0.00 2.29
1538 1594 8.798859 ACTCTAGTAATCTAAACGGTCTTGTA 57.201 34.615 0.00 0.00 0.00 2.41
1539 1595 7.700022 ACTCTAGTAATCTAAACGGTCTTGT 57.300 36.000 0.00 0.00 0.00 3.16
1540 1596 8.891720 ACTACTCTAGTAATCTAAACGGTCTTG 58.108 37.037 0.00 0.00 37.23 3.02
1541 1597 8.891720 CACTACTCTAGTAATCTAAACGGTCTT 58.108 37.037 0.00 0.00 37.23 3.01
1542 1598 8.263640 TCACTACTCTAGTAATCTAAACGGTCT 58.736 37.037 0.00 0.00 37.23 3.85
1543 1599 8.430801 TCACTACTCTAGTAATCTAAACGGTC 57.569 38.462 0.00 0.00 37.23 4.79
1544 1600 8.977267 ATCACTACTCTAGTAATCTAAACGGT 57.023 34.615 0.00 0.00 37.23 4.83
1545 1601 9.275398 AGATCACTACTCTAGTAATCTAAACGG 57.725 37.037 0.00 0.00 37.23 4.44
1583 1639 8.225107 GCGTTGTACTTCATCTGTAAACAAATA 58.775 33.333 0.00 0.00 0.00 1.40
1584 1640 7.075741 GCGTTGTACTTCATCTGTAAACAAAT 58.924 34.615 0.00 0.00 0.00 2.32
1585 1641 6.037281 TGCGTTGTACTTCATCTGTAAACAAA 59.963 34.615 0.00 0.00 0.00 2.83
1586 1642 5.524281 TGCGTTGTACTTCATCTGTAAACAA 59.476 36.000 0.00 0.00 0.00 2.83
1587 1643 5.051153 TGCGTTGTACTTCATCTGTAAACA 58.949 37.500 0.00 0.00 0.00 2.83
1588 1644 5.585500 TGCGTTGTACTTCATCTGTAAAC 57.415 39.130 0.00 0.00 0.00 2.01
1589 1645 5.332732 CGTTGCGTTGTACTTCATCTGTAAA 60.333 40.000 0.00 0.00 0.00 2.01
1590 1646 4.149221 CGTTGCGTTGTACTTCATCTGTAA 59.851 41.667 0.00 0.00 0.00 2.41
1591 1647 3.671459 CGTTGCGTTGTACTTCATCTGTA 59.329 43.478 0.00 0.00 0.00 2.74
1592 1648 2.475111 CGTTGCGTTGTACTTCATCTGT 59.525 45.455 0.00 0.00 0.00 3.41
1593 1649 2.729360 TCGTTGCGTTGTACTTCATCTG 59.271 45.455 0.00 0.00 0.00 2.90
1594 1650 2.987149 CTCGTTGCGTTGTACTTCATCT 59.013 45.455 0.00 0.00 0.00 2.90
1595 1651 2.984471 TCTCGTTGCGTTGTACTTCATC 59.016 45.455 0.00 0.00 0.00 2.92
1596 1652 3.021269 TCTCGTTGCGTTGTACTTCAT 57.979 42.857 0.00 0.00 0.00 2.57
1597 1653 2.495409 TCTCGTTGCGTTGTACTTCA 57.505 45.000 0.00 0.00 0.00 3.02
1598 1654 3.244579 ACTTTCTCGTTGCGTTGTACTTC 59.755 43.478 0.00 0.00 0.00 3.01
1599 1655 3.000925 CACTTTCTCGTTGCGTTGTACTT 59.999 43.478 0.00 0.00 0.00 2.24
1600 1656 2.538449 CACTTTCTCGTTGCGTTGTACT 59.462 45.455 0.00 0.00 0.00 2.73
1601 1657 2.887733 CACTTTCTCGTTGCGTTGTAC 58.112 47.619 0.00 0.00 0.00 2.90
1602 1658 1.259507 GCACTTTCTCGTTGCGTTGTA 59.740 47.619 0.00 0.00 0.00 2.41
1608 1664 2.556287 CCCGCACTTTCTCGTTGC 59.444 61.111 0.00 0.00 0.00 4.17
1612 1668 0.882927 TCAAACCCCGCACTTTCTCG 60.883 55.000 0.00 0.00 0.00 4.04
1627 1683 8.764524 CCAACCGATGGTATTAATTTTTCAAA 57.235 30.769 0.00 0.00 44.85 2.69
1673 1730 6.935167 AGGTGAAAACATGTGAAAGTCTTTT 58.065 32.000 0.00 0.00 0.00 2.27
1677 1734 5.163561 TGGAAGGTGAAAACATGTGAAAGTC 60.164 40.000 0.00 0.00 0.00 3.01
1685 1742 5.577945 GCATTATGTGGAAGGTGAAAACATG 59.422 40.000 0.00 0.00 33.67 3.21
1686 1743 5.481473 AGCATTATGTGGAAGGTGAAAACAT 59.519 36.000 0.00 0.00 35.70 2.71
1689 1746 6.418057 AAAGCATTATGTGGAAGGTGAAAA 57.582 33.333 0.00 0.00 0.00 2.29
1754 1811 8.770438 GAGAATTCTCAACTGTTCAATCTACT 57.230 34.615 27.08 0.00 42.42 2.57
1771 1851 8.088463 AGAAGATACCTTGATGTGAGAATTCT 57.912 34.615 7.95 7.95 31.62 2.40
1784 1864 5.385617 CGCTTTCACAAAGAAGATACCTTG 58.614 41.667 0.01 0.00 41.02 3.61
1855 1939 6.713762 AAAAATGTGTTCTCTGATGGAACA 57.286 33.333 8.02 8.02 46.95 3.18
1895 1981 2.229792 CTTGAAGCTGCAGGGTGTAAA 58.770 47.619 17.12 0.00 0.00 2.01
1917 2003 1.850345 AGTGGGGACTCCAACTTGAAA 59.150 47.619 0.00 0.00 44.90 2.69
1940 2026 9.452065 GAAAAGAGTGAAAGTGATTCCTTTTAC 57.548 33.333 0.00 11.31 37.26 2.01
2025 2111 4.398358 CAGTGAGTACCGACAAGAATAGGA 59.602 45.833 0.00 0.00 0.00 2.94
2261 2347 3.562973 AGAAGTTTGCACACTGAGACATG 59.437 43.478 6.22 0.00 0.00 3.21
2262 2348 3.812053 GAGAAGTTTGCACACTGAGACAT 59.188 43.478 6.22 0.00 0.00 3.06
2277 2363 5.163509 GGTTTGCCTGAAAAGAAGAGAAGTT 60.164 40.000 0.00 0.00 0.00 2.66
2398 2484 1.555533 GCAGTAGCTCAACTAAGGGGT 59.444 52.381 0.00 0.00 37.91 4.95
2435 2521 1.755179 ATGTGGGCATGCAGTAGAAC 58.245 50.000 21.36 8.20 33.37 3.01
2441 2527 2.276201 CATTCAAATGTGGGCATGCAG 58.724 47.619 21.36 0.00 35.15 4.41
2456 2542 8.946085 GTCTATAAGTTTGATGGTCAACATTCA 58.054 33.333 0.00 0.00 40.72 2.57
2554 2640 5.596361 TCAGGCGATAGAGAAAAGAAGAGAT 59.404 40.000 0.00 0.00 39.76 2.75
2571 2657 2.426522 CAAAGTTCCAATCTCAGGCGA 58.573 47.619 0.00 0.00 0.00 5.54
2811 2897 6.545298 AGGAATATTAGAGAAAGCTTGCCTTG 59.455 38.462 0.00 0.00 33.01 3.61
2828 2914 6.460123 CGCAGGAAAATAGCACAAGGAATATT 60.460 38.462 0.00 0.00 0.00 1.28
2829 2915 5.009010 CGCAGGAAAATAGCACAAGGAATAT 59.991 40.000 0.00 0.00 0.00 1.28
2830 2916 4.335315 CGCAGGAAAATAGCACAAGGAATA 59.665 41.667 0.00 0.00 0.00 1.75
2831 2917 3.129287 CGCAGGAAAATAGCACAAGGAAT 59.871 43.478 0.00 0.00 0.00 3.01
2893 2979 5.648092 AGGTAATACATGTTGTTCAGGAAGC 59.352 40.000 2.30 0.00 0.00 3.86
2894 2980 8.786826 TTAGGTAATACATGTTGTTCAGGAAG 57.213 34.615 2.30 0.00 0.00 3.46
3064 3152 7.379098 ACATCGAGGGAAAATAAGAAACTTC 57.621 36.000 0.69 0.00 0.00 3.01
3178 3268 3.928992 ACTGAATCTACTTGCACACATCG 59.071 43.478 0.00 0.00 0.00 3.84
3206 3296 8.513774 TGGTTTCGAATTACCAATAGTAAAACC 58.486 33.333 17.41 8.13 44.04 3.27
3430 3520 4.590647 GGTACCATTCAGATCAGATCAGGA 59.409 45.833 13.14 6.91 0.00 3.86
3524 3615 4.222124 ACATTATTCAGGTCCAGTCCAC 57.778 45.455 0.00 0.00 0.00 4.02
3608 3699 0.966179 ACCCAATCGCCAGTTTTTCC 59.034 50.000 0.00 0.00 0.00 3.13
3611 3702 2.253513 CGACCCAATCGCCAGTTTT 58.746 52.632 0.00 0.00 45.52 2.43
3624 3715 1.512156 AATGCAAACACCGACGACCC 61.512 55.000 0.00 0.00 0.00 4.46
3659 3751 1.818060 GCACCATTGCCATCAGTACAA 59.182 47.619 0.00 0.00 43.66 2.41
3660 3752 1.462616 GCACCATTGCCATCAGTACA 58.537 50.000 0.00 0.00 43.66 2.90
3670 3762 0.733566 CAACATCCACGCACCATTGC 60.734 55.000 0.00 0.00 46.21 3.56
3890 4084 1.004440 AGCTCAACCGTCAGGCTTC 60.004 57.895 0.00 0.00 42.76 3.86
3923 4117 4.882842 ACTAAATTGTTCGGGCCAAAAT 57.117 36.364 4.39 0.00 0.00 1.82
3970 4164 2.514458 ACAGTGGGATGGAATGGAAC 57.486 50.000 0.00 0.00 0.00 3.62
3971 4165 4.879295 AATACAGTGGGATGGAATGGAA 57.121 40.909 0.00 0.00 0.00 3.53
4022 4216 0.817013 TTCTTTTCCATCATGGCGGC 59.183 50.000 0.00 0.00 37.47 6.53
4023 4217 2.368439 TCTTCTTTTCCATCATGGCGG 58.632 47.619 0.00 0.00 37.47 6.13
4024 4218 3.379372 ACATCTTCTTTTCCATCATGGCG 59.621 43.478 0.00 0.00 37.47 5.69
4025 4219 4.679662 CACATCTTCTTTTCCATCATGGC 58.320 43.478 0.00 0.00 37.47 4.40
4026 4220 4.158949 TGCACATCTTCTTTTCCATCATGG 59.841 41.667 0.00 0.00 39.43 3.66
4027 4221 5.319140 TGCACATCTTCTTTTCCATCATG 57.681 39.130 0.00 0.00 0.00 3.07
4028 4222 5.988310 TTGCACATCTTCTTTTCCATCAT 57.012 34.783 0.00 0.00 0.00 2.45
4029 4223 5.477637 TCATTGCACATCTTCTTTTCCATCA 59.522 36.000 0.00 0.00 0.00 3.07
4030 4224 5.957798 TCATTGCACATCTTCTTTTCCATC 58.042 37.500 0.00 0.00 0.00 3.51
4031 4225 5.988310 TCATTGCACATCTTCTTTTCCAT 57.012 34.783 0.00 0.00 0.00 3.41
4046 4240 1.303236 CACCCGGGTCTTCATTGCA 60.303 57.895 27.51 0.00 0.00 4.08
4083 4277 1.224592 CACTGATAGGTGGGCCCAC 59.775 63.158 42.18 42.18 45.49 4.61
4123 4317 2.530151 ACTCAAGCTCCCCTGGCA 60.530 61.111 0.00 0.00 0.00 4.92
4127 4321 1.985116 GACGGACTCAAGCTCCCCT 60.985 63.158 0.00 0.00 0.00 4.79
4128 4322 1.950973 GAGACGGACTCAAGCTCCCC 61.951 65.000 2.60 0.00 44.36 4.81
4129 4323 1.513622 GAGACGGACTCAAGCTCCC 59.486 63.158 2.60 0.00 44.36 4.30
4130 4324 1.137825 CGAGACGGACTCAAGCTCC 59.862 63.158 8.14 0.00 45.14 4.70
4131 4325 0.522180 TTCGAGACGGACTCAAGCTC 59.478 55.000 8.14 0.00 45.14 4.09
4132 4326 1.178276 ATTCGAGACGGACTCAAGCT 58.822 50.000 8.14 0.00 45.14 3.74
4133 4327 2.846039 TATTCGAGACGGACTCAAGC 57.154 50.000 8.14 0.00 45.14 4.01
4134 4328 4.358494 AGTTATTCGAGACGGACTCAAG 57.642 45.455 8.14 0.00 45.14 3.02
4135 4329 6.318144 AGAATAGTTATTCGAGACGGACTCAA 59.682 38.462 8.14 2.51 45.10 3.02
4136 4330 5.821470 AGAATAGTTATTCGAGACGGACTCA 59.179 40.000 8.14 0.00 45.10 3.41
4137 4331 6.303021 AGAATAGTTATTCGAGACGGACTC 57.697 41.667 6.30 0.00 45.10 3.36
4138 4332 7.982761 ATAGAATAGTTATTCGAGACGGACT 57.017 36.000 6.30 0.00 45.10 3.85
4139 4333 9.149225 TCTATAGAATAGTTATTCGAGACGGAC 57.851 37.037 0.00 0.00 45.10 4.79
4140 4334 9.149225 GTCTATAGAATAGTTATTCGAGACGGA 57.851 37.037 3.40 8.54 45.10 4.69
4143 4337 9.743937 CACGTCTATAGAATAGTTATTCGAGAC 57.256 37.037 20.44 20.44 45.10 3.36
4144 4338 8.933807 CCACGTCTATAGAATAGTTATTCGAGA 58.066 37.037 3.40 7.68 45.10 4.04
4145 4339 8.176365 CCCACGTCTATAGAATAGTTATTCGAG 58.824 40.741 3.40 0.00 45.10 4.04
4146 4340 7.361542 GCCCACGTCTATAGAATAGTTATTCGA 60.362 40.741 3.40 2.51 45.10 3.71
4147 4341 6.746364 GCCCACGTCTATAGAATAGTTATTCG 59.254 42.308 3.40 3.18 45.10 3.34
4148 4342 7.600065 TGCCCACGTCTATAGAATAGTTATTC 58.400 38.462 3.40 4.12 41.78 1.75
4149 4343 7.534723 TGCCCACGTCTATAGAATAGTTATT 57.465 36.000 3.40 0.00 0.00 1.40
4150 4344 7.719871 ATGCCCACGTCTATAGAATAGTTAT 57.280 36.000 3.40 0.00 0.00 1.89
4151 4345 7.534723 AATGCCCACGTCTATAGAATAGTTA 57.465 36.000 3.40 0.00 0.00 2.24
4152 4346 6.420913 AATGCCCACGTCTATAGAATAGTT 57.579 37.500 3.40 0.00 0.00 2.24
4153 4347 6.267928 AGAAATGCCCACGTCTATAGAATAGT 59.732 38.462 3.40 2.61 0.00 2.12
4154 4348 6.692486 AGAAATGCCCACGTCTATAGAATAG 58.308 40.000 3.40 1.97 0.00 1.73
4155 4349 6.665992 AGAAATGCCCACGTCTATAGAATA 57.334 37.500 3.40 0.00 0.00 1.75
4156 4350 5.552870 AGAAATGCCCACGTCTATAGAAT 57.447 39.130 3.40 0.00 0.00 2.40
4157 4351 5.116180 CAAGAAATGCCCACGTCTATAGAA 58.884 41.667 3.40 0.00 0.00 2.10
4158 4352 4.442893 CCAAGAAATGCCCACGTCTATAGA 60.443 45.833 0.00 0.00 0.00 1.98
4159 4353 3.809832 CCAAGAAATGCCCACGTCTATAG 59.190 47.826 0.00 0.00 0.00 1.31
4160 4354 3.433031 CCCAAGAAATGCCCACGTCTATA 60.433 47.826 0.00 0.00 0.00 1.31
4161 4355 2.643551 CCAAGAAATGCCCACGTCTAT 58.356 47.619 0.00 0.00 0.00 1.98
4162 4356 1.339631 CCCAAGAAATGCCCACGTCTA 60.340 52.381 0.00 0.00 0.00 2.59
4163 4357 0.609131 CCCAAGAAATGCCCACGTCT 60.609 55.000 0.00 0.00 0.00 4.18
4164 4358 0.893727 ACCCAAGAAATGCCCACGTC 60.894 55.000 0.00 0.00 0.00 4.34
4165 4359 0.893727 GACCCAAGAAATGCCCACGT 60.894 55.000 0.00 0.00 0.00 4.49
4166 4360 0.609131 AGACCCAAGAAATGCCCACG 60.609 55.000 0.00 0.00 0.00 4.94
4167 4361 0.890683 CAGACCCAAGAAATGCCCAC 59.109 55.000 0.00 0.00 0.00 4.61
4168 4362 0.251742 CCAGACCCAAGAAATGCCCA 60.252 55.000 0.00 0.00 0.00 5.36
4169 4363 1.607801 GCCAGACCCAAGAAATGCCC 61.608 60.000 0.00 0.00 0.00 5.36
4170 4364 0.613012 AGCCAGACCCAAGAAATGCC 60.613 55.000 0.00 0.00 0.00 4.40
4171 4365 1.260544 AAGCCAGACCCAAGAAATGC 58.739 50.000 0.00 0.00 0.00 3.56
4172 4366 4.341366 AAAAAGCCAGACCCAAGAAATG 57.659 40.909 0.00 0.00 0.00 2.32
4190 4384 4.116238 GCTTTTCAATGTCCGGTCAAAAA 58.884 39.130 5.25 7.43 0.00 1.94
4191 4385 3.383185 AGCTTTTCAATGTCCGGTCAAAA 59.617 39.130 5.25 0.00 0.00 2.44
4192 4386 2.955660 AGCTTTTCAATGTCCGGTCAAA 59.044 40.909 5.25 0.00 0.00 2.69
4193 4387 2.552315 GAGCTTTTCAATGTCCGGTCAA 59.448 45.455 5.25 0.00 0.00 3.18
4194 4388 2.151202 GAGCTTTTCAATGTCCGGTCA 58.849 47.619 3.25 3.25 0.00 4.02
4195 4389 2.151202 TGAGCTTTTCAATGTCCGGTC 58.849 47.619 0.00 0.00 31.34 4.79
4196 4390 2.270352 TGAGCTTTTCAATGTCCGGT 57.730 45.000 0.00 0.00 31.34 5.28
4197 4391 2.351738 GGTTGAGCTTTTCAATGTCCGG 60.352 50.000 0.00 0.00 46.85 5.14
4198 4392 2.554032 AGGTTGAGCTTTTCAATGTCCG 59.446 45.455 0.00 0.00 46.85 4.79
4199 4393 3.823304 AGAGGTTGAGCTTTTCAATGTCC 59.177 43.478 0.00 0.00 46.85 4.02
4200 4394 6.205658 ACTTAGAGGTTGAGCTTTTCAATGTC 59.794 38.462 0.00 0.00 46.85 3.06
4201 4395 6.064717 ACTTAGAGGTTGAGCTTTTCAATGT 58.935 36.000 0.00 0.00 46.85 2.71
4202 4396 6.205464 TGACTTAGAGGTTGAGCTTTTCAATG 59.795 38.462 0.00 0.00 46.85 2.82
4203 4397 6.299141 TGACTTAGAGGTTGAGCTTTTCAAT 58.701 36.000 0.00 0.00 46.85 2.57
4204 4398 5.680619 TGACTTAGAGGTTGAGCTTTTCAA 58.319 37.500 0.00 0.00 43.40 2.69
4205 4399 5.070446 TCTGACTTAGAGGTTGAGCTTTTCA 59.930 40.000 0.00 0.00 0.00 2.69
4206 4400 5.542779 TCTGACTTAGAGGTTGAGCTTTTC 58.457 41.667 0.00 0.00 0.00 2.29
4207 4401 5.552870 TCTGACTTAGAGGTTGAGCTTTT 57.447 39.130 0.00 0.00 0.00 2.27
4219 4413 1.644337 TGGGGTAGGCTCTGACTTAGA 59.356 52.381 0.00 0.00 0.00 2.10
4220 4414 2.160721 TGGGGTAGGCTCTGACTTAG 57.839 55.000 0.00 0.00 0.00 2.18
4221 4415 2.185387 GTTGGGGTAGGCTCTGACTTA 58.815 52.381 0.00 0.00 0.00 2.24
4222 4416 0.984995 GTTGGGGTAGGCTCTGACTT 59.015 55.000 0.00 0.00 0.00 3.01
4223 4417 0.910088 GGTTGGGGTAGGCTCTGACT 60.910 60.000 0.00 0.00 0.00 3.41
4224 4418 1.198759 TGGTTGGGGTAGGCTCTGAC 61.199 60.000 0.00 0.00 0.00 3.51
4225 4419 0.474854 TTGGTTGGGGTAGGCTCTGA 60.475 55.000 0.00 0.00 0.00 3.27
4226 4420 0.404040 TTTGGTTGGGGTAGGCTCTG 59.596 55.000 0.00 0.00 0.00 3.35
4227 4421 1.285078 GATTTGGTTGGGGTAGGCTCT 59.715 52.381 0.00 0.00 0.00 4.09
4228 4422 1.005450 TGATTTGGTTGGGGTAGGCTC 59.995 52.381 0.00 0.00 0.00 4.70
4229 4423 1.080638 TGATTTGGTTGGGGTAGGCT 58.919 50.000 0.00 0.00 0.00 4.58
4230 4424 1.931635 TTGATTTGGTTGGGGTAGGC 58.068 50.000 0.00 0.00 0.00 3.93
4231 4425 6.613153 TTTATTTGATTTGGTTGGGGTAGG 57.387 37.500 0.00 0.00 0.00 3.18
4232 4426 8.945057 CATTTTTATTTGATTTGGTTGGGGTAG 58.055 33.333 0.00 0.00 0.00 3.18
4233 4427 7.391833 GCATTTTTATTTGATTTGGTTGGGGTA 59.608 33.333 0.00 0.00 0.00 3.69
4234 4428 6.208402 GCATTTTTATTTGATTTGGTTGGGGT 59.792 34.615 0.00 0.00 0.00 4.95
4235 4429 6.208204 TGCATTTTTATTTGATTTGGTTGGGG 59.792 34.615 0.00 0.00 0.00 4.96
4236 4430 7.211966 TGCATTTTTATTTGATTTGGTTGGG 57.788 32.000 0.00 0.00 0.00 4.12
4237 4431 8.732531 AGATGCATTTTTATTTGATTTGGTTGG 58.267 29.630 0.00 0.00 0.00 3.77
4279 4473 6.180472 TCCCTTAAGATGAACCAGTGAATTC 58.820 40.000 3.36 0.00 0.00 2.17
4286 4480 7.751768 GGAATATTCCCTTAAGATGAACCAG 57.248 40.000 22.09 0.00 41.62 4.00
4337 4531 8.564574 GTGTTGATGTACTAAGAAATTGGTTGA 58.435 33.333 0.00 0.00 0.00 3.18
4345 4539 8.826710 CACTTCTTGTGTTGATGTACTAAGAAA 58.173 33.333 0.00 0.00 41.53 2.52
4364 4558 0.404040 TCCCCAATTCGCCACTTCTT 59.596 50.000 0.00 0.00 0.00 2.52
4375 4569 3.716872 CTGAGGTAGTACCATCCCCAATT 59.283 47.826 21.49 0.00 41.95 2.32
4376 4570 3.311402 ACTGAGGTAGTACCATCCCCAAT 60.311 47.826 21.49 0.00 41.95 3.16
4377 4571 2.045326 ACTGAGGTAGTACCATCCCCAA 59.955 50.000 21.49 0.54 41.95 4.12
4378 4572 1.649633 ACTGAGGTAGTACCATCCCCA 59.350 52.381 21.49 9.48 41.95 4.96
4379 4573 2.040178 CACTGAGGTAGTACCATCCCC 58.960 57.143 21.49 5.60 41.95 4.81
4380 4574 3.028094 TCACTGAGGTAGTACCATCCC 57.972 52.381 21.49 7.89 41.95 3.85
4381 4575 5.615925 ATTTCACTGAGGTAGTACCATCC 57.384 43.478 21.49 10.23 41.95 3.51
4382 4576 5.294552 GCAATTTCACTGAGGTAGTACCATC 59.705 44.000 21.49 15.03 41.95 3.51
4383 4577 5.186198 GCAATTTCACTGAGGTAGTACCAT 58.814 41.667 21.49 6.55 41.95 3.55
4384 4578 4.575885 GCAATTTCACTGAGGTAGTACCA 58.424 43.478 21.49 0.45 41.95 3.25
4385 4579 3.617263 CGCAATTTCACTGAGGTAGTACC 59.383 47.826 11.73 11.73 37.60 3.34
4386 4580 3.617263 CCGCAATTTCACTGAGGTAGTAC 59.383 47.826 0.00 0.00 37.60 2.73
4387 4581 3.369052 CCCGCAATTTCACTGAGGTAGTA 60.369 47.826 0.00 0.00 37.60 1.82
4388 4582 2.615493 CCCGCAATTTCACTGAGGTAGT 60.615 50.000 0.00 0.00 41.36 2.73
4389 4583 2.009774 CCCGCAATTTCACTGAGGTAG 58.990 52.381 0.00 0.00 32.30 3.18
4390 4584 1.626321 TCCCGCAATTTCACTGAGGTA 59.374 47.619 0.00 0.00 32.30 3.08
4391 4585 0.400213 TCCCGCAATTTCACTGAGGT 59.600 50.000 0.00 0.00 32.30 3.85
4392 4586 1.470098 CTTCCCGCAATTTCACTGAGG 59.530 52.381 0.00 0.00 33.86 3.86
4393 4587 2.426522 TCTTCCCGCAATTTCACTGAG 58.573 47.619 0.00 0.00 0.00 3.35
4394 4588 2.559698 TCTTCCCGCAATTTCACTGA 57.440 45.000 0.00 0.00 0.00 3.41
4395 4589 2.159338 CCATCTTCCCGCAATTTCACTG 60.159 50.000 0.00 0.00 0.00 3.66
4396 4590 2.094675 CCATCTTCCCGCAATTTCACT 58.905 47.619 0.00 0.00 0.00 3.41
4397 4591 1.134946 CCCATCTTCCCGCAATTTCAC 59.865 52.381 0.00 0.00 0.00 3.18
4398 4592 1.272425 ACCCATCTTCCCGCAATTTCA 60.272 47.619 0.00 0.00 0.00 2.69
4399 4593 1.474330 ACCCATCTTCCCGCAATTTC 58.526 50.000 0.00 0.00 0.00 2.17
4400 4594 2.654863 CTACCCATCTTCCCGCAATTT 58.345 47.619 0.00 0.00 0.00 1.82
4401 4595 1.133792 CCTACCCATCTTCCCGCAATT 60.134 52.381 0.00 0.00 0.00 2.32
4402 4596 0.474184 CCTACCCATCTTCCCGCAAT 59.526 55.000 0.00 0.00 0.00 3.56
4403 4597 0.912487 ACCTACCCATCTTCCCGCAA 60.912 55.000 0.00 0.00 0.00 4.85
4404 4598 1.306654 ACCTACCCATCTTCCCGCA 60.307 57.895 0.00 0.00 0.00 5.69
4405 4599 1.146263 CACCTACCCATCTTCCCGC 59.854 63.158 0.00 0.00 0.00 6.13
4406 4600 1.696097 CCCACCTACCCATCTTCCCG 61.696 65.000 0.00 0.00 0.00 5.14
4407 4601 1.353394 CCCCACCTACCCATCTTCCC 61.353 65.000 0.00 0.00 0.00 3.97
4408 4602 1.996070 GCCCCACCTACCCATCTTCC 61.996 65.000 0.00 0.00 0.00 3.46
4409 4603 1.532238 GCCCCACCTACCCATCTTC 59.468 63.158 0.00 0.00 0.00 2.87
4410 4604 2.006991 GGCCCCACCTACCCATCTT 61.007 63.158 0.00 0.00 34.51 2.40
4411 4605 2.368329 GGCCCCACCTACCCATCT 60.368 66.667 0.00 0.00 34.51 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.