Multiple sequence alignment - TraesCS1D01G199100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G199100 chr1D 100.000 4636 0 0 1 4636 281398609 281403244 0.000000e+00 8562.0
1 TraesCS1D01G199100 chr1A 91.997 1412 87 15 2002 3405 353258648 353257255 0.000000e+00 1958.0
2 TraesCS1D01G199100 chr1A 94.081 811 41 4 3832 4636 353256671 353255862 0.000000e+00 1225.0
3 TraesCS1D01G199100 chr1A 84.094 635 66 22 936 1546 353259998 353259375 8.650000e-162 580.0
4 TraesCS1D01G199100 chr1A 90.355 197 7 5 3518 3713 353257057 353256872 9.960000e-62 248.0
5 TraesCS1D01G199100 chr7D 96.639 952 14 7 1 935 52488775 52489725 0.000000e+00 1565.0
6 TraesCS1D01G199100 chr5A 94.917 964 16 9 1 939 835023 834068 0.000000e+00 1478.0
7 TraesCS1D01G199100 chr3A 95.000 960 15 9 1 935 699631638 699632589 0.000000e+00 1476.0
8 TraesCS1D01G199100 chr3A 100.000 28 0 0 1940 1967 651513177 651513204 8.000000e-03 52.8
9 TraesCS1D01G199100 chr1B 94.354 797 34 4 3844 4636 382218628 382217839 0.000000e+00 1212.0
10 TraesCS1D01G199100 chr1B 92.557 833 56 2 2002 2832 382220574 382219746 0.000000e+00 1190.0
11 TraesCS1D01G199100 chr1B 93.186 587 24 6 2831 3415 382219666 382219094 0.000000e+00 848.0
12 TraesCS1D01G199100 chr1B 84.926 272 13 12 3518 3771 382218908 382218647 2.770000e-62 250.0
13 TraesCS1D01G199100 chr1B 94.828 116 4 1 1 114 687155980 687156095 3.690000e-41 180.0
14 TraesCS1D01G199100 chr5D 85.297 993 78 34 1 935 552439891 552438909 0.000000e+00 963.0
15 TraesCS1D01G199100 chr7A 85.200 1000 72 37 1 935 7810848 7811836 0.000000e+00 957.0
16 TraesCS1D01G199100 chr6A 83.923 989 95 33 1 936 56312975 56311998 0.000000e+00 887.0
17 TraesCS1D01G199100 chr6A 83.822 989 96 29 1 936 56377204 56376227 0.000000e+00 881.0
18 TraesCS1D01G199100 chr6A 89.211 380 35 4 1 375 2270410 2270788 1.950000e-128 470.0
19 TraesCS1D01G199100 chr2D 88.052 770 64 14 1 761 190399446 190400196 0.000000e+00 887.0
20 TraesCS1D01G199100 chr2B 93.617 47 3 0 1942 1988 188021499 188021453 2.310000e-08 71.3
21 TraesCS1D01G199100 chr2B 91.489 47 4 0 1942 1988 188149621 188149575 1.080000e-06 65.8
22 TraesCS1D01G199100 chr2B 91.489 47 4 0 1942 1988 188255893 188255847 1.080000e-06 65.8
23 TraesCS1D01G199100 chr2B 96.875 32 1 0 1942 1973 636553344 636553313 2.000000e-03 54.7
24 TraesCS1D01G199100 chrUn 91.489 47 4 0 1942 1988 477603369 477603323 1.080000e-06 65.8
25 TraesCS1D01G199100 chr4B 91.304 46 4 0 1940 1985 21371233 21371188 3.870000e-06 63.9
26 TraesCS1D01G199100 chr4B 93.023 43 3 0 1941 1983 360230644 360230602 3.870000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G199100 chr1D 281398609 281403244 4635 False 8562.00 8562 100.00000 1 4636 1 chr1D.!!$F1 4635
1 TraesCS1D01G199100 chr1A 353255862 353259998 4136 True 1002.75 1958 90.13175 936 4636 4 chr1A.!!$R1 3700
2 TraesCS1D01G199100 chr7D 52488775 52489725 950 False 1565.00 1565 96.63900 1 935 1 chr7D.!!$F1 934
3 TraesCS1D01G199100 chr5A 834068 835023 955 True 1478.00 1478 94.91700 1 939 1 chr5A.!!$R1 938
4 TraesCS1D01G199100 chr3A 699631638 699632589 951 False 1476.00 1476 95.00000 1 935 1 chr3A.!!$F2 934
5 TraesCS1D01G199100 chr1B 382217839 382220574 2735 True 875.00 1212 91.25575 2002 4636 4 chr1B.!!$R1 2634
6 TraesCS1D01G199100 chr5D 552438909 552439891 982 True 963.00 963 85.29700 1 935 1 chr5D.!!$R1 934
7 TraesCS1D01G199100 chr7A 7810848 7811836 988 False 957.00 957 85.20000 1 935 1 chr7A.!!$F1 934
8 TraesCS1D01G199100 chr6A 56311998 56312975 977 True 887.00 887 83.92300 1 936 1 chr6A.!!$R1 935
9 TraesCS1D01G199100 chr6A 56376227 56377204 977 True 881.00 881 83.82200 1 936 1 chr6A.!!$R2 935
10 TraesCS1D01G199100 chr2D 190399446 190400196 750 False 887.00 887 88.05200 1 761 1 chr2D.!!$F1 760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
976 1071 0.875908 CCTCACACACACGGACACAG 60.876 60.0 0.00 0.0 0.00 3.66 F
1095 1192 0.038526 CAACTTACTCCCGTGCGTCT 60.039 55.0 0.00 0.0 0.00 4.18 F
1557 1678 0.179089 CTCGGTCTCCCATCTTGCTG 60.179 60.0 0.00 0.0 0.00 4.41 F
1814 2298 0.321210 CCGAACCACATGTGTGCCTA 60.321 55.0 23.79 0.0 44.34 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2104 2592 0.036732 TGCCAAGCTTTCCGATGTCT 59.963 50.0 0.00 0.00 0.00 3.41 R
2270 2758 0.103572 TCCGCCCGCTACTGAATTAC 59.896 55.0 0.00 0.00 0.00 1.89 R
2492 2980 0.179156 CTTTAGCGACCGCCTCGTTA 60.179 55.0 11.03 0.00 44.92 3.18 R
3698 4431 0.035056 GGCAGGCTTGTGTACATCCT 60.035 55.0 0.00 0.92 31.97 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
180 197 1.691196 TTGTTCTTTGGACTGCAGGG 58.309 50.000 19.93 0.00 0.00 4.45
228 247 4.267349 TCTTTCTACCAGGCAGTTGTAC 57.733 45.455 0.00 0.00 0.00 2.90
280 299 2.254546 ATTCAGTGAAGTGCAACGGA 57.745 45.000 11.91 0.00 45.86 4.69
538 570 3.375782 AGAAAATCACTGTTTGCAGGC 57.624 42.857 0.00 0.00 46.62 4.85
964 1059 2.433318 GCAGTCCTCGCCTCACAC 60.433 66.667 0.00 0.00 0.00 3.82
976 1071 0.875908 CCTCACACACACGGACACAG 60.876 60.000 0.00 0.00 0.00 3.66
999 1096 2.101415 AGTGTGCGCTCATGCTAGAATA 59.899 45.455 16.02 0.00 36.97 1.75
1013 1110 2.071778 AGAATAATGGCGGCCATGTT 57.928 45.000 33.56 28.34 44.40 2.71
1027 1124 0.604073 CATGTTCATTGCAGCCACCA 59.396 50.000 0.00 0.00 0.00 4.17
1030 1127 1.153524 TTCATTGCAGCCACCACCT 59.846 52.632 0.00 0.00 0.00 4.00
1031 1128 1.180456 TTCATTGCAGCCACCACCTG 61.180 55.000 0.00 0.00 0.00 4.00
1037 1134 4.341783 AGCCACCACCTGCTGCTC 62.342 66.667 0.00 0.00 36.23 4.26
1053 1150 1.074850 CTCCTCCTCCTCCTTCCCC 60.075 68.421 0.00 0.00 0.00 4.81
1061 1158 2.434331 CTCCTTCCCCGCAAACCA 59.566 61.111 0.00 0.00 0.00 3.67
1080 1177 4.704833 AGCCGGCACATCGCAACT 62.705 61.111 31.54 0.00 45.17 3.16
1092 1189 2.726691 CGCAACTTACTCCCGTGCG 61.727 63.158 1.69 1.69 37.93 5.34
1093 1190 1.666872 GCAACTTACTCCCGTGCGT 60.667 57.895 0.00 0.00 0.00 5.24
1095 1192 0.038526 CAACTTACTCCCGTGCGTCT 60.039 55.000 0.00 0.00 0.00 4.18
1096 1193 0.243095 AACTTACTCCCGTGCGTCTC 59.757 55.000 0.00 0.00 0.00 3.36
1109 1206 1.883732 CGTCTCGCCTTCCTCTTCA 59.116 57.895 0.00 0.00 0.00 3.02
1140 1237 2.881389 CGTCGCTCTCTCCTTGCT 59.119 61.111 0.00 0.00 0.00 3.91
1197 1294 4.680537 ACCTCCCTGTCGGCGTCT 62.681 66.667 6.85 0.00 0.00 4.18
1230 1327 1.135489 CACGACTACGAGGCAAGCTAA 60.135 52.381 0.00 0.00 42.66 3.09
1231 1328 1.132643 ACGACTACGAGGCAAGCTAAG 59.867 52.381 0.00 0.00 42.66 2.18
1232 1329 1.562017 GACTACGAGGCAAGCTAAGC 58.438 55.000 2.60 2.60 0.00 3.09
1233 1330 1.135333 GACTACGAGGCAAGCTAAGCT 59.865 52.381 10.47 0.00 42.56 3.74
1234 1331 2.358267 GACTACGAGGCAAGCTAAGCTA 59.642 50.000 10.47 0.00 38.25 3.32
1238 1335 0.460311 GAGGCAAGCTAAGCTACCGA 59.540 55.000 10.47 0.00 38.25 4.69
1245 1342 3.444703 AGCTAAGCTACCGATGTCTTG 57.555 47.619 0.00 0.00 36.99 3.02
1246 1343 2.761208 AGCTAAGCTACCGATGTCTTGT 59.239 45.455 0.00 0.00 36.99 3.16
1253 1350 3.368236 GCTACCGATGTCTTGTCTTTGTC 59.632 47.826 0.00 0.00 0.00 3.18
1256 1353 2.076863 CGATGTCTTGTCTTTGTCCCC 58.923 52.381 0.00 0.00 0.00 4.81
1257 1354 2.437413 GATGTCTTGTCTTTGTCCCCC 58.563 52.381 0.00 0.00 0.00 5.40
1258 1355 1.217916 TGTCTTGTCTTTGTCCCCCA 58.782 50.000 0.00 0.00 0.00 4.96
1259 1356 1.133915 TGTCTTGTCTTTGTCCCCCAC 60.134 52.381 0.00 0.00 0.00 4.61
1261 1358 1.142870 TCTTGTCTTTGTCCCCCACTG 59.857 52.381 0.00 0.00 0.00 3.66
1262 1359 0.467290 TTGTCTTTGTCCCCCACTGC 60.467 55.000 0.00 0.00 0.00 4.40
1263 1360 1.603739 GTCTTTGTCCCCCACTGCC 60.604 63.158 0.00 0.00 0.00 4.85
1264 1361 2.283173 CTTTGTCCCCCACTGCCC 60.283 66.667 0.00 0.00 0.00 5.36
1302 1399 9.780413 CTTCATTTTTCTTACCTTATCTGCTTC 57.220 33.333 0.00 0.00 0.00 3.86
1306 1403 4.046938 TCTTACCTTATCTGCTTCTGCG 57.953 45.455 0.00 0.00 43.34 5.18
1308 1405 0.807667 ACCTTATCTGCTTCTGCGCG 60.808 55.000 0.00 0.00 43.34 6.86
1309 1406 0.807667 CCTTATCTGCTTCTGCGCGT 60.808 55.000 8.43 0.00 43.34 6.01
1310 1407 0.574454 CTTATCTGCTTCTGCGCGTC 59.426 55.000 8.43 0.00 43.34 5.19
1324 1421 4.293648 CGTCCGTGTGGGTGAGCA 62.294 66.667 0.00 0.00 37.00 4.26
1326 1423 2.110213 TCCGTGTGGGTGAGCAAC 59.890 61.111 0.00 0.00 37.00 4.17
1337 1442 3.087370 GGTGAGCAACCTATCCCTTTT 57.913 47.619 1.45 0.00 46.55 2.27
1351 1456 3.496331 TCCCTTTTCCCAATTCTGTCAC 58.504 45.455 0.00 0.00 0.00 3.67
1357 1462 2.054021 TCCCAATTCTGTCACCTCACA 58.946 47.619 0.00 0.00 0.00 3.58
1365 1470 3.239449 TCTGTCACCTCACAGTACCATT 58.761 45.455 0.74 0.00 43.80 3.16
1366 1471 4.412843 TCTGTCACCTCACAGTACCATTA 58.587 43.478 0.74 0.00 43.80 1.90
1368 1473 3.259876 TGTCACCTCACAGTACCATTACC 59.740 47.826 0.00 0.00 0.00 2.85
1369 1474 3.259876 GTCACCTCACAGTACCATTACCA 59.740 47.826 0.00 0.00 0.00 3.25
1370 1475 3.904965 TCACCTCACAGTACCATTACCAA 59.095 43.478 0.00 0.00 0.00 3.67
1371 1476 4.000988 CACCTCACAGTACCATTACCAAC 58.999 47.826 0.00 0.00 0.00 3.77
1372 1477 3.649023 ACCTCACAGTACCATTACCAACA 59.351 43.478 0.00 0.00 0.00 3.33
1373 1478 4.288626 ACCTCACAGTACCATTACCAACAT 59.711 41.667 0.00 0.00 0.00 2.71
1374 1479 5.486063 ACCTCACAGTACCATTACCAACATA 59.514 40.000 0.00 0.00 0.00 2.29
1375 1480 6.157994 ACCTCACAGTACCATTACCAACATAT 59.842 38.462 0.00 0.00 0.00 1.78
1376 1481 6.483307 CCTCACAGTACCATTACCAACATATG 59.517 42.308 0.00 0.00 0.00 1.78
1378 1483 7.801104 TCACAGTACCATTACCAACATATGAT 58.199 34.615 10.38 0.00 0.00 2.45
1380 1485 9.208022 CACAGTACCATTACCAACATATGATAG 57.792 37.037 10.38 0.00 0.00 2.08
1381 1486 8.934697 ACAGTACCATTACCAACATATGATAGT 58.065 33.333 10.38 0.00 0.00 2.12
1413 1518 2.632996 TCTTGATATCCCTACCTTGGCG 59.367 50.000 0.00 0.00 0.00 5.69
1421 1526 0.899720 CCTACCTTGGCGACACCTTA 59.100 55.000 0.00 0.00 42.67 2.69
1425 1530 1.549170 ACCTTGGCGACACCTTACTAG 59.451 52.381 0.00 0.00 42.67 2.57
1436 1547 5.180868 CGACACCTTACTAGTACTTCAGTGT 59.819 44.000 16.41 16.41 38.55 3.55
1437 1548 6.328641 ACACCTTACTAGTACTTCAGTGTG 57.671 41.667 16.00 6.91 34.83 3.82
1438 1549 5.162075 CACCTTACTAGTACTTCAGTGTGC 58.838 45.833 0.00 0.00 0.00 4.57
1453 1564 3.226346 GTGTGCTGCACATGATTTCAT 57.774 42.857 34.82 0.00 46.32 2.57
1457 1568 6.497437 GTGTGCTGCACATGATTTCATAATA 58.503 36.000 34.82 7.14 46.32 0.98
1462 1573 6.421801 GCTGCACATGATTTCATAATAAACCC 59.578 38.462 0.00 0.00 34.26 4.11
1485 1605 6.424207 CCCTGTTATATTAGAAGAAGAACGCC 59.576 42.308 0.00 0.00 0.00 5.68
1493 1613 0.253327 AAGAAGAACGCCAGGGGATC 59.747 55.000 11.28 8.22 0.00 3.36
1510 1630 4.889995 GGGGATCTATTCAGAAAACCCAAG 59.110 45.833 0.00 0.00 40.98 3.61
1511 1631 5.510430 GGGATCTATTCAGAAAACCCAAGT 58.490 41.667 0.00 0.00 39.95 3.16
1522 1643 7.771183 TCAGAAAACCCAAGTATATGCATTTC 58.229 34.615 3.54 0.00 0.00 2.17
1527 1648 6.524101 ACCCAAGTATATGCATTTCGTTTT 57.476 33.333 3.54 0.00 0.00 2.43
1534 1655 9.855021 AAGTATATGCATTTCGTTTTTAAGCTT 57.145 25.926 3.54 3.48 0.00 3.74
1538 1659 6.280537 TGCATTTCGTTTTTAAGCTTTTCC 57.719 33.333 3.20 0.00 0.00 3.13
1542 1663 4.477302 TCGTTTTTAAGCTTTTCCTCGG 57.523 40.909 3.20 0.00 0.00 4.63
1546 1667 5.450171 GTTTTTAAGCTTTTCCTCGGTCTC 58.550 41.667 3.20 0.00 0.00 3.36
1548 1669 0.325272 AAGCTTTTCCTCGGTCTCCC 59.675 55.000 0.00 0.00 0.00 4.30
1549 1670 0.836400 AGCTTTTCCTCGGTCTCCCA 60.836 55.000 0.00 0.00 0.00 4.37
1551 1672 1.744114 GCTTTTCCTCGGTCTCCCATC 60.744 57.143 0.00 0.00 0.00 3.51
1552 1673 1.834263 CTTTTCCTCGGTCTCCCATCT 59.166 52.381 0.00 0.00 0.00 2.90
1554 1675 1.195115 TTCCTCGGTCTCCCATCTTG 58.805 55.000 0.00 0.00 0.00 3.02
1555 1676 1.144936 CCTCGGTCTCCCATCTTGC 59.855 63.158 0.00 0.00 0.00 4.01
1556 1677 1.333636 CCTCGGTCTCCCATCTTGCT 61.334 60.000 0.00 0.00 0.00 3.91
1557 1678 0.179089 CTCGGTCTCCCATCTTGCTG 60.179 60.000 0.00 0.00 0.00 4.41
1558 1679 0.614697 TCGGTCTCCCATCTTGCTGA 60.615 55.000 0.00 0.00 0.00 4.26
1559 1680 0.467384 CGGTCTCCCATCTTGCTGAT 59.533 55.000 0.00 0.00 35.40 2.90
1563 1684 3.371380 GGTCTCCCATCTTGCTGATTTCT 60.371 47.826 0.00 0.00 32.05 2.52
1564 1685 3.876320 GTCTCCCATCTTGCTGATTTCTC 59.124 47.826 0.00 0.00 32.05 2.87
1565 1686 3.520721 TCTCCCATCTTGCTGATTTCTCA 59.479 43.478 0.00 0.00 32.05 3.27
1590 1726 1.166531 GCATTCCTGCGTACCCCATC 61.167 60.000 0.00 0.00 38.92 3.51
1597 1733 4.287580 CGTACCCCATCAAACGCA 57.712 55.556 0.00 0.00 0.00 5.24
1601 1737 1.670811 GTACCCCATCAAACGCATCTG 59.329 52.381 0.00 0.00 0.00 2.90
1606 1742 1.133598 CCATCAAACGCATCTGCACAT 59.866 47.619 2.72 0.00 42.21 3.21
1607 1743 2.416296 CCATCAAACGCATCTGCACATT 60.416 45.455 2.72 0.00 42.21 2.71
1663 1832 6.355397 CAGATCATTCTGCGTTTATCTGTT 57.645 37.500 0.00 0.00 42.79 3.16
1669 1838 2.225491 TCTGCGTTTATCTGTTTGTGCC 59.775 45.455 0.00 0.00 0.00 5.01
1670 1839 1.268352 TGCGTTTATCTGTTTGTGCCC 59.732 47.619 0.00 0.00 0.00 5.36
1672 1841 2.094752 GCGTTTATCTGTTTGTGCCCAT 60.095 45.455 0.00 0.00 0.00 4.00
1682 1851 5.948758 TCTGTTTGTGCCCATATGTTAATCA 59.051 36.000 1.24 0.00 0.00 2.57
1691 1865 5.301551 GCCCATATGTTAATCATGAACACCA 59.698 40.000 0.00 0.00 39.51 4.17
1705 1879 4.901868 TGAACACCACTATAACACTTCCC 58.098 43.478 0.00 0.00 0.00 3.97
1709 1883 3.689649 CACCACTATAACACTTCCCTTGC 59.310 47.826 0.00 0.00 0.00 4.01
1710 1884 3.329520 ACCACTATAACACTTCCCTTGCA 59.670 43.478 0.00 0.00 0.00 4.08
1712 1886 4.764823 CCACTATAACACTTCCCTTGCAAA 59.235 41.667 0.00 0.00 0.00 3.68
1713 1887 5.242838 CCACTATAACACTTCCCTTGCAAAA 59.757 40.000 0.00 0.00 0.00 2.44
1714 1888 6.381801 CACTATAACACTTCCCTTGCAAAAG 58.618 40.000 0.00 4.09 0.00 2.27
1716 1890 7.174253 CACTATAACACTTCCCTTGCAAAAGTA 59.826 37.037 13.27 1.38 32.20 2.24
1717 1891 7.888546 ACTATAACACTTCCCTTGCAAAAGTAT 59.111 33.333 13.27 7.70 32.20 2.12
1718 1892 4.853924 ACACTTCCCTTGCAAAAGTATG 57.146 40.909 13.27 6.57 32.20 2.39
1720 1894 3.573967 CACTTCCCTTGCAAAAGTATGGT 59.426 43.478 13.27 0.00 32.20 3.55
1721 1895 4.764823 CACTTCCCTTGCAAAAGTATGGTA 59.235 41.667 13.27 0.00 32.20 3.25
1723 1897 3.692690 TCCCTTGCAAAAGTATGGTACC 58.307 45.455 4.43 4.43 0.00 3.34
1724 1898 2.422127 CCCTTGCAAAAGTATGGTACCG 59.578 50.000 7.57 0.00 0.00 4.02
1725 1899 2.159435 CCTTGCAAAAGTATGGTACCGC 60.159 50.000 7.57 2.15 0.00 5.68
1726 1900 2.186532 TGCAAAAGTATGGTACCGCA 57.813 45.000 7.57 5.04 0.00 5.69
1727 1901 2.717390 TGCAAAAGTATGGTACCGCAT 58.283 42.857 7.57 0.00 0.00 4.73
1729 1903 2.943033 GCAAAAGTATGGTACCGCATCT 59.057 45.455 7.57 0.17 0.00 2.90
1730 1904 3.377172 GCAAAAGTATGGTACCGCATCTT 59.623 43.478 7.57 6.53 0.00 2.40
1731 1905 4.142469 GCAAAAGTATGGTACCGCATCTTT 60.142 41.667 7.57 11.86 0.00 2.52
1733 1907 4.755266 AAGTATGGTACCGCATCTTTCT 57.245 40.909 7.57 0.00 0.00 2.52
1734 1908 4.323553 AGTATGGTACCGCATCTTTCTC 57.676 45.455 7.57 0.00 0.00 2.87
1736 1910 1.179152 TGGTACCGCATCTTTCTCGA 58.821 50.000 7.57 0.00 0.00 4.04
1737 1911 1.754803 TGGTACCGCATCTTTCTCGAT 59.245 47.619 7.57 0.00 0.00 3.59
1738 1912 2.223735 TGGTACCGCATCTTTCTCGATC 60.224 50.000 7.57 0.00 0.00 3.69
1739 1913 2.044860 GTACCGCATCTTTCTCGATCG 58.955 52.381 9.36 9.36 0.00 3.69
1740 1914 0.738975 ACCGCATCTTTCTCGATCGA 59.261 50.000 18.32 18.32 0.00 3.59
1761 2232 6.330278 TCGAAAGATGACATGTTACGAGATT 58.670 36.000 0.00 0.00 33.31 2.40
1763 2234 7.971722 TCGAAAGATGACATGTTACGAGATTTA 59.028 33.333 0.00 0.00 33.31 1.40
1765 2236 9.855361 GAAAGATGACATGTTACGAGATTTATG 57.145 33.333 0.00 0.00 0.00 1.90
1766 2237 7.413475 AGATGACATGTTACGAGATTTATGC 57.587 36.000 0.00 0.00 0.00 3.14
1767 2238 7.212976 AGATGACATGTTACGAGATTTATGCT 58.787 34.615 0.00 0.00 0.00 3.79
1768 2239 7.712639 AGATGACATGTTACGAGATTTATGCTT 59.287 33.333 0.00 0.00 0.00 3.91
1769 2240 7.234187 TGACATGTTACGAGATTTATGCTTC 57.766 36.000 0.00 0.00 0.00 3.86
1770 2241 6.816140 TGACATGTTACGAGATTTATGCTTCA 59.184 34.615 0.00 0.00 0.00 3.02
1771 2242 7.495606 TGACATGTTACGAGATTTATGCTTCAT 59.504 33.333 0.00 0.00 0.00 2.57
1772 2243 8.887036 ACATGTTACGAGATTTATGCTTCATA 57.113 30.769 0.00 0.00 0.00 2.15
1773 2244 9.325198 ACATGTTACGAGATTTATGCTTCATAA 57.675 29.630 0.00 0.00 34.95 1.90
1780 2251 9.319143 ACGAGATTTATGCTTCATAATATAGCC 57.681 33.333 0.00 0.00 36.41 3.93
1781 2252 9.539825 CGAGATTTATGCTTCATAATATAGCCT 57.460 33.333 0.73 0.00 36.41 4.58
1788 2259 8.946797 ATGCTTCATAATATAGCCTTTTCCTT 57.053 30.769 0.00 0.00 34.03 3.36
1789 2260 8.766994 TGCTTCATAATATAGCCTTTTCCTTT 57.233 30.769 0.00 0.00 34.03 3.11
1796 2280 9.809395 ATAATATAGCCTTTTCCTTTTAGTCCC 57.191 33.333 0.00 0.00 0.00 4.46
1803 2287 2.845363 TCCTTTTAGTCCCGAACCAC 57.155 50.000 0.00 0.00 0.00 4.16
1806 2290 2.747446 CCTTTTAGTCCCGAACCACATG 59.253 50.000 0.00 0.00 0.00 3.21
1811 2295 1.599518 TCCCGAACCACATGTGTGC 60.600 57.895 23.79 11.63 44.34 4.57
1812 2296 2.625823 CCCGAACCACATGTGTGCC 61.626 63.158 23.79 11.05 44.34 5.01
1814 2298 0.321210 CCGAACCACATGTGTGCCTA 60.321 55.000 23.79 0.00 44.34 3.93
1821 2309 1.938577 CACATGTGTGCCTATCTCTGC 59.061 52.381 18.03 0.00 39.39 4.26
1832 2320 3.766591 GCCTATCTCTGCAAGCTCCTATA 59.233 47.826 0.00 0.00 0.00 1.31
1835 2323 4.888326 ATCTCTGCAAGCTCCTATAAGG 57.112 45.455 0.00 0.00 36.46 2.69
1836 2324 2.968574 TCTCTGCAAGCTCCTATAAGGG 59.031 50.000 0.00 0.00 35.59 3.95
1838 2326 1.771255 CTGCAAGCTCCTATAAGGGGT 59.229 52.381 0.00 0.00 38.44 4.95
1841 2329 4.758822 TGCAAGCTCCTATAAGGGGTATA 58.241 43.478 0.00 0.00 38.44 1.47
1843 2331 5.248477 TGCAAGCTCCTATAAGGGGTATAAG 59.752 44.000 0.00 0.00 38.44 1.73
1846 2334 5.844601 AGCTCCTATAAGGGGTATAAGAGG 58.155 45.833 0.00 0.00 38.44 3.69
1848 2336 5.657745 GCTCCTATAAGGGGTATAAGAGGTC 59.342 48.000 0.00 0.00 38.44 3.85
1849 2337 6.753259 GCTCCTATAAGGGGTATAAGAGGTCA 60.753 46.154 0.00 0.00 38.44 4.02
1850 2338 6.801953 TCCTATAAGGGGTATAAGAGGTCAG 58.198 44.000 0.00 0.00 35.59 3.51
1852 2340 6.664384 CCTATAAGGGGTATAAGAGGTCAGTC 59.336 46.154 0.00 0.00 0.00 3.51
1853 2341 2.946785 AGGGGTATAAGAGGTCAGTCG 58.053 52.381 0.00 0.00 0.00 4.18
1854 2342 1.340568 GGGGTATAAGAGGTCAGTCGC 59.659 57.143 0.00 0.00 0.00 5.19
1855 2343 2.029623 GGGTATAAGAGGTCAGTCGCA 58.970 52.381 0.00 0.00 0.00 5.10
1856 2344 2.429610 GGGTATAAGAGGTCAGTCGCAA 59.570 50.000 0.00 0.00 0.00 4.85
1857 2345 3.118884 GGGTATAAGAGGTCAGTCGCAAA 60.119 47.826 0.00 0.00 0.00 3.68
1858 2346 4.501071 GGTATAAGAGGTCAGTCGCAAAA 58.499 43.478 0.00 0.00 0.00 2.44
1859 2347 4.933400 GGTATAAGAGGTCAGTCGCAAAAA 59.067 41.667 0.00 0.00 0.00 1.94
1888 2376 7.723109 AAAAAGGGGTATAAGAGGTGGATAT 57.277 36.000 0.00 0.00 0.00 1.63
1889 2377 6.954352 AAAGGGGTATAAGAGGTGGATATC 57.046 41.667 0.00 0.00 0.00 1.63
1890 2378 5.905633 AGGGGTATAAGAGGTGGATATCT 57.094 43.478 2.05 0.00 0.00 1.98
1891 2379 5.594777 AGGGGTATAAGAGGTGGATATCTG 58.405 45.833 2.05 0.00 0.00 2.90
1892 2380 5.078006 AGGGGTATAAGAGGTGGATATCTGT 59.922 44.000 2.05 0.00 0.00 3.41
1893 2381 5.785940 GGGGTATAAGAGGTGGATATCTGTT 59.214 44.000 2.05 0.00 0.00 3.16
1894 2382 6.070710 GGGGTATAAGAGGTGGATATCTGTTC 60.071 46.154 2.05 0.00 0.00 3.18
1900 2388 5.903810 AGAGGTGGATATCTGTTCGTTAAC 58.096 41.667 2.05 0.00 36.07 2.01
1901 2389 5.019785 AGGTGGATATCTGTTCGTTAACC 57.980 43.478 2.05 0.00 34.49 2.85
1903 2391 5.895534 AGGTGGATATCTGTTCGTTAACCTA 59.104 40.000 2.05 0.00 34.49 3.08
1913 2401 6.698766 TCTGTTCGTTAACCTACTGAAAACTC 59.301 38.462 0.00 0.00 34.49 3.01
1914 2402 5.754890 TGTTCGTTAACCTACTGAAAACTCC 59.245 40.000 0.00 0.00 34.49 3.85
1929 2417 2.044793 ACTCCCCTTCTGTGAATCCA 57.955 50.000 0.00 0.00 0.00 3.41
1935 2423 2.040278 CCCTTCTGTGAATCCACTCCAA 59.960 50.000 0.00 0.00 43.55 3.53
1936 2424 3.498481 CCCTTCTGTGAATCCACTCCAAA 60.498 47.826 0.00 0.00 43.55 3.28
1937 2425 3.503748 CCTTCTGTGAATCCACTCCAAAC 59.496 47.826 0.00 0.00 43.55 2.93
1941 2429 5.200483 TCTGTGAATCCACTCCAAACTTTT 58.800 37.500 0.00 0.00 43.55 2.27
1942 2430 6.361433 TCTGTGAATCCACTCCAAACTTTTA 58.639 36.000 0.00 0.00 43.55 1.52
1943 2431 6.262273 TCTGTGAATCCACTCCAAACTTTTAC 59.738 38.462 0.00 0.00 43.55 2.01
1944 2432 6.126409 TGTGAATCCACTCCAAACTTTTACT 58.874 36.000 0.00 0.00 43.55 2.24
1945 2433 6.262273 TGTGAATCCACTCCAAACTTTTACTC 59.738 38.462 0.00 0.00 43.55 2.59
1946 2434 5.768164 TGAATCCACTCCAAACTTTTACTCC 59.232 40.000 0.00 0.00 0.00 3.85
1947 2435 4.094830 TCCACTCCAAACTTTTACTCCC 57.905 45.455 0.00 0.00 0.00 4.30
1948 2436 3.720002 TCCACTCCAAACTTTTACTCCCT 59.280 43.478 0.00 0.00 0.00 4.20
1949 2437 4.072839 CCACTCCAAACTTTTACTCCCTC 58.927 47.826 0.00 0.00 0.00 4.30
1950 2438 4.072839 CACTCCAAACTTTTACTCCCTCC 58.927 47.826 0.00 0.00 0.00 4.30
1951 2439 3.244457 ACTCCAAACTTTTACTCCCTCCG 60.244 47.826 0.00 0.00 0.00 4.63
1952 2440 2.707257 TCCAAACTTTTACTCCCTCCGT 59.293 45.455 0.00 0.00 0.00 4.69
1953 2441 3.072211 CCAAACTTTTACTCCCTCCGTC 58.928 50.000 0.00 0.00 0.00 4.79
1954 2442 3.072211 CAAACTTTTACTCCCTCCGTCC 58.928 50.000 0.00 0.00 0.00 4.79
1955 2443 1.273759 ACTTTTACTCCCTCCGTCCC 58.726 55.000 0.00 0.00 0.00 4.46
1956 2444 1.272807 CTTTTACTCCCTCCGTCCCA 58.727 55.000 0.00 0.00 0.00 4.37
1957 2445 1.838077 CTTTTACTCCCTCCGTCCCAT 59.162 52.381 0.00 0.00 0.00 4.00
1958 2446 2.852714 TTTACTCCCTCCGTCCCATA 57.147 50.000 0.00 0.00 0.00 2.74
1959 2447 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
1960 2448 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
1961 2449 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
1962 2450 2.606378 ACTCCCTCCGTCCCATAATAC 58.394 52.381 0.00 0.00 0.00 1.89
1963 2451 2.090943 ACTCCCTCCGTCCCATAATACA 60.091 50.000 0.00 0.00 0.00 2.29
1964 2452 2.969950 CTCCCTCCGTCCCATAATACAA 59.030 50.000 0.00 0.00 0.00 2.41
1965 2453 2.969950 TCCCTCCGTCCCATAATACAAG 59.030 50.000 0.00 0.00 0.00 3.16
1966 2454 2.969950 CCCTCCGTCCCATAATACAAGA 59.030 50.000 0.00 0.00 0.00 3.02
1967 2455 3.583086 CCCTCCGTCCCATAATACAAGAT 59.417 47.826 0.00 0.00 0.00 2.40
1968 2456 4.775780 CCCTCCGTCCCATAATACAAGATA 59.224 45.833 0.00 0.00 0.00 1.98
1969 2457 5.425539 CCCTCCGTCCCATAATACAAGATAT 59.574 44.000 0.00 0.00 0.00 1.63
1970 2458 6.070194 CCCTCCGTCCCATAATACAAGATATT 60.070 42.308 0.00 0.00 0.00 1.28
1971 2459 7.125204 CCCTCCGTCCCATAATACAAGATATTA 59.875 40.741 0.00 0.00 0.00 0.98
1972 2460 8.705594 CCTCCGTCCCATAATACAAGATATTAT 58.294 37.037 0.00 0.00 32.14 1.28
1973 2461 9.751542 CTCCGTCCCATAATACAAGATATTATC 57.248 37.037 0.00 0.00 30.19 1.75
1974 2462 9.262240 TCCGTCCCATAATACAAGATATTATCA 57.738 33.333 6.46 0.00 30.19 2.15
1997 2485 9.790297 ATCATAACCAATATGTAGGGACTAGAT 57.210 33.333 0.00 0.00 46.93 1.98
2013 2501 7.289317 AGGGACTAGATACGATGTTGGAAAATA 59.711 37.037 0.00 0.00 36.02 1.40
2016 2504 8.311650 ACTAGATACGATGTTGGAAAATATGC 57.688 34.615 0.00 0.00 0.00 3.14
2033 2521 2.162319 TGCAGCTTGTCATGTCGTTA 57.838 45.000 0.00 0.00 0.00 3.18
2152 2640 8.230472 AGAGTTCAAGAGATGTTTTTGTTGAT 57.770 30.769 0.00 0.00 0.00 2.57
2218 2706 5.380043 ACACTGAGGACTTTGATGAATGTT 58.620 37.500 0.00 0.00 0.00 2.71
2221 2709 4.984295 TGAGGACTTTGATGAATGTTGGA 58.016 39.130 0.00 0.00 0.00 3.53
2266 2754 6.375377 GTCTTCTGAGACGATATGGTATGTC 58.625 44.000 0.00 0.00 42.60 3.06
2270 2758 5.241728 TCTGAGACGATATGGTATGTCTTGG 59.758 44.000 0.00 0.00 41.50 3.61
2273 2761 6.548251 TGAGACGATATGGTATGTCTTGGTAA 59.452 38.462 0.00 0.00 41.50 2.85
2274 2762 7.232737 TGAGACGATATGGTATGTCTTGGTAAT 59.767 37.037 0.00 0.00 41.50 1.89
2282 2770 6.346096 TGGTATGTCTTGGTAATTCAGTAGC 58.654 40.000 0.00 0.00 0.00 3.58
2283 2771 5.462398 GGTATGTCTTGGTAATTCAGTAGCG 59.538 44.000 0.00 0.00 0.00 4.26
2284 2772 3.857052 TGTCTTGGTAATTCAGTAGCGG 58.143 45.455 0.00 0.00 0.00 5.52
2308 2796 2.290577 GGACTCTTGCCTGTGAGGATTT 60.291 50.000 0.00 0.00 37.67 2.17
2324 2812 4.264460 GGATTTATCCGCTCACTCATCT 57.736 45.455 0.00 0.00 37.19 2.90
2327 2815 4.944619 TTTATCCGCTCACTCATCTCAT 57.055 40.909 0.00 0.00 0.00 2.90
2342 2830 7.120285 CACTCATCTCATTGTTACAGGTTCATT 59.880 37.037 0.00 0.00 0.00 2.57
2345 2833 6.801539 TCTCATTGTTACAGGTTCATTGAC 57.198 37.500 0.00 0.00 0.00 3.18
2366 2854 2.427506 GAGGATCAGTTGGTGGTGAAC 58.572 52.381 0.00 0.00 33.17 3.18
2414 2902 1.212688 TGGCCCGACATTGATGAATCT 59.787 47.619 0.00 0.00 0.00 2.40
2423 2911 6.204359 CGACATTGATGAATCTTGGAAATCC 58.796 40.000 0.00 0.00 0.00 3.01
2453 2941 1.531149 GGGATCACACAGTTGTTGACG 59.469 52.381 0.00 0.00 31.66 4.35
2459 2947 1.156736 CACAGTTGTTGACGGGGATC 58.843 55.000 0.00 0.00 0.00 3.36
2477 2965 2.831685 TCAGCGTTCACATAGTTGGT 57.168 45.000 0.00 0.00 0.00 3.67
2684 3176 3.581101 TGGTTCTATAGCAGATGAGGCT 58.419 45.455 0.00 0.00 45.18 4.58
2721 3213 1.438651 TGCGTGTTTGCAGGTATCTC 58.561 50.000 0.00 0.00 40.62 2.75
2730 3222 1.985159 TGCAGGTATCTCCCAGTTTGT 59.015 47.619 0.00 0.00 36.75 2.83
2772 3264 2.682856 TGCCACTCAAAAGTCTGTTGAC 59.317 45.455 0.93 0.00 43.22 3.18
2867 3440 6.868864 ACTGCAGTGAGTTAAACTACATGTAG 59.131 38.462 27.66 27.66 39.04 2.74
2948 3521 2.501723 CCTAGAAAGCCTTAGCAGGTCA 59.498 50.000 0.00 0.00 43.18 4.02
2987 3561 0.863799 GCTTCTTTGCTTGCTTTGGC 59.136 50.000 0.00 0.00 39.26 4.52
3113 3688 2.024176 ATCTTCATTCCGGGTTCACG 57.976 50.000 0.00 0.00 0.00 4.35
3178 3753 3.829886 TTCGCTTGGTTGATGATTGTC 57.170 42.857 0.00 0.00 0.00 3.18
3188 3763 5.006386 GGTTGATGATTGTCTGGTTCTTCT 58.994 41.667 0.00 0.00 0.00 2.85
3192 3767 6.064060 TGATGATTGTCTGGTTCTTCTTTGT 58.936 36.000 0.00 0.00 0.00 2.83
3229 3807 2.124403 GCTGGGGGTGCAGATGAG 60.124 66.667 0.00 0.00 0.00 2.90
3405 3983 3.516615 CAGACAAGAAGCTAGCAGGTAC 58.483 50.000 18.83 3.15 0.00 3.34
3406 3984 2.164624 AGACAAGAAGCTAGCAGGTACG 59.835 50.000 18.83 3.00 0.00 3.67
3407 3985 1.281899 CAAGAAGCTAGCAGGTACGC 58.718 55.000 18.83 0.00 0.00 4.42
3408 3986 0.895530 AAGAAGCTAGCAGGTACGCA 59.104 50.000 18.83 0.00 0.00 5.24
3411 3989 0.320374 AAGCTAGCAGGTACGCAACA 59.680 50.000 18.83 0.00 0.00 3.33
3412 3990 0.389948 AGCTAGCAGGTACGCAACAC 60.390 55.000 18.83 0.00 0.00 3.32
3413 3991 1.359459 GCTAGCAGGTACGCAACACC 61.359 60.000 10.63 0.00 36.22 4.16
3414 3992 0.037697 CTAGCAGGTACGCAACACCA 60.038 55.000 1.64 0.00 38.62 4.17
3416 3994 1.597027 GCAGGTACGCAACACCACT 60.597 57.895 1.64 0.00 38.62 4.00
3417 3995 0.320073 GCAGGTACGCAACACCACTA 60.320 55.000 1.64 0.00 38.62 2.74
3419 3997 1.042229 AGGTACGCAACACCACTACA 58.958 50.000 1.64 0.00 38.62 2.74
3420 3998 1.621814 AGGTACGCAACACCACTACAT 59.378 47.619 1.64 0.00 38.62 2.29
3436 4160 6.884836 ACCACTACATTTAGATTCCCTTTCAC 59.115 38.462 0.00 0.00 0.00 3.18
3468 4192 3.916761 TCTGCAAGAAAAATGGCATCAC 58.083 40.909 0.00 0.00 42.31 3.06
3469 4193 3.575256 TCTGCAAGAAAAATGGCATCACT 59.425 39.130 0.00 0.00 42.31 3.41
3470 4194 3.916761 TGCAAGAAAAATGGCATCACTC 58.083 40.909 0.00 0.00 0.00 3.51
3471 4195 2.919229 GCAAGAAAAATGGCATCACTCG 59.081 45.455 0.00 0.00 0.00 4.18
3472 4196 3.366273 GCAAGAAAAATGGCATCACTCGA 60.366 43.478 0.00 0.00 0.00 4.04
3473 4197 4.409570 CAAGAAAAATGGCATCACTCGAG 58.590 43.478 11.84 11.84 0.00 4.04
3474 4198 3.679389 AGAAAAATGGCATCACTCGAGT 58.321 40.909 13.58 13.58 0.00 4.18
3475 4199 3.438087 AGAAAAATGGCATCACTCGAGTG 59.562 43.478 34.76 34.76 46.91 3.51
3476 4200 2.479566 AAATGGCATCACTCGAGTGT 57.520 45.000 37.21 24.84 45.76 3.55
3477 4201 2.479566 AATGGCATCACTCGAGTGTT 57.520 45.000 37.21 29.33 45.76 3.32
3478 4202 2.479566 ATGGCATCACTCGAGTGTTT 57.520 45.000 37.21 25.82 45.76 2.83
3479 4203 1.511850 TGGCATCACTCGAGTGTTTG 58.488 50.000 37.21 33.09 45.76 2.93
3480 4204 0.798776 GGCATCACTCGAGTGTTTGG 59.201 55.000 37.21 26.35 45.76 3.28
3481 4205 1.512926 GCATCACTCGAGTGTTTGGT 58.487 50.000 37.21 20.18 45.76 3.67
3482 4206 2.611971 GGCATCACTCGAGTGTTTGGTA 60.612 50.000 37.21 22.16 45.76 3.25
3483 4207 3.064207 GCATCACTCGAGTGTTTGGTAA 58.936 45.455 37.21 21.49 45.76 2.85
3484 4208 3.123621 GCATCACTCGAGTGTTTGGTAAG 59.876 47.826 37.21 20.59 45.76 2.34
3485 4209 4.556233 CATCACTCGAGTGTTTGGTAAGA 58.444 43.478 37.21 20.15 45.76 2.10
3486 4210 4.659111 TCACTCGAGTGTTTGGTAAGAA 57.341 40.909 37.21 17.03 45.76 2.52
3487 4211 5.013568 TCACTCGAGTGTTTGGTAAGAAA 57.986 39.130 37.21 16.55 45.76 2.52
3488 4212 4.807304 TCACTCGAGTGTTTGGTAAGAAAC 59.193 41.667 37.21 0.00 45.76 2.78
3489 4213 4.025145 CACTCGAGTGTTTGGTAAGAAACC 60.025 45.833 32.77 0.00 43.69 3.27
3490 4214 6.196649 CACTCGAGTGTTTGGTAAGAAACCT 61.197 44.000 32.77 0.00 43.73 3.50
3491 4215 6.957525 CACTCGAGTGTTTGGTAAGAAACCTA 60.958 42.308 32.77 0.00 43.73 3.08
3492 4216 8.679767 CACTCGAGTGTTTGGTAAGAAACCTAG 61.680 44.444 32.77 4.71 43.73 3.02
3502 4226 6.819397 GGTAAGAAACCTAGCAGACAAAAT 57.181 37.500 0.00 0.00 45.75 1.82
3503 4227 7.215719 GGTAAGAAACCTAGCAGACAAAATT 57.784 36.000 0.00 0.00 45.75 1.82
3504 4228 7.658261 GGTAAGAAACCTAGCAGACAAAATTT 58.342 34.615 0.00 0.00 45.75 1.82
3505 4229 7.595130 GGTAAGAAACCTAGCAGACAAAATTTG 59.405 37.037 3.89 3.89 45.75 2.32
3506 4230 5.532557 AGAAACCTAGCAGACAAAATTTGC 58.467 37.500 5.52 0.00 38.09 3.68
3507 4231 3.942130 ACCTAGCAGACAAAATTTGCC 57.058 42.857 5.52 0.00 38.58 4.52
3508 4232 3.230134 ACCTAGCAGACAAAATTTGCCA 58.770 40.909 5.52 0.00 38.58 4.92
3509 4233 3.005791 ACCTAGCAGACAAAATTTGCCAC 59.994 43.478 5.52 0.00 38.58 5.01
3510 4234 3.256631 CCTAGCAGACAAAATTTGCCACT 59.743 43.478 5.52 0.00 38.58 4.00
3511 4235 3.102052 AGCAGACAAAATTTGCCACTG 57.898 42.857 17.20 17.20 38.58 3.66
3512 4236 2.694628 AGCAGACAAAATTTGCCACTGA 59.305 40.909 22.15 0.00 38.58 3.41
3513 4237 3.322828 AGCAGACAAAATTTGCCACTGAT 59.677 39.130 22.15 16.89 38.58 2.90
3514 4238 4.060205 GCAGACAAAATTTGCCACTGATT 58.940 39.130 22.15 0.00 34.19 2.57
3515 4239 4.512571 GCAGACAAAATTTGCCACTGATTT 59.487 37.500 22.15 0.00 34.19 2.17
3516 4240 5.559417 GCAGACAAAATTTGCCACTGATTTG 60.559 40.000 22.15 5.02 34.19 2.32
3698 4431 7.499321 TTCAAGACTTTATTCCGTTGCTTAA 57.501 32.000 0.00 0.00 0.00 1.85
3710 4443 3.749088 CCGTTGCTTAAGGATGTACACAA 59.251 43.478 4.29 0.00 0.00 3.33
3714 4447 3.009033 TGCTTAAGGATGTACACAAGCCT 59.991 43.478 17.91 11.74 38.04 4.58
3716 4449 1.826385 AAGGATGTACACAAGCCTGC 58.174 50.000 0.00 0.00 35.68 4.85
3717 4450 0.035056 AGGATGTACACAAGCCTGCC 60.035 55.000 0.00 0.00 34.68 4.85
3719 4452 1.369091 GATGTACACAAGCCTGCCCG 61.369 60.000 0.00 0.00 0.00 6.13
3720 4453 2.032071 GTACACAAGCCTGCCCGT 59.968 61.111 0.00 0.00 0.00 5.28
3721 4454 2.031919 TACACAAGCCTGCCCGTG 59.968 61.111 6.91 6.91 35.48 4.94
3734 4467 2.725008 CCGTGCAAAGCGGGAAAA 59.275 55.556 6.35 0.00 44.98 2.29
3771 4530 4.462483 GGACCAAGAGTATGAAATGCCAAA 59.538 41.667 0.00 0.00 0.00 3.28
3779 4539 7.271511 AGAGTATGAAATGCCAAACTCTCTAG 58.728 38.462 0.00 0.00 39.48 2.43
3788 4548 2.561419 CCAAACTCTCTAGTTCACCCGA 59.439 50.000 0.00 0.00 45.37 5.14
3789 4549 3.195825 CCAAACTCTCTAGTTCACCCGAT 59.804 47.826 0.00 0.00 45.37 4.18
3790 4550 4.425520 CAAACTCTCTAGTTCACCCGATC 58.574 47.826 0.00 0.00 45.37 3.69
3791 4551 2.657143 ACTCTCTAGTTCACCCGATCC 58.343 52.381 0.00 0.00 29.00 3.36
3792 4552 2.025226 ACTCTCTAGTTCACCCGATCCA 60.025 50.000 0.00 0.00 29.00 3.41
3794 4554 2.758979 TCTCTAGTTCACCCGATCCAAC 59.241 50.000 0.00 0.00 0.00 3.77
3795 4555 1.475280 TCTAGTTCACCCGATCCAACG 59.525 52.381 0.00 0.00 0.00 4.10
3796 4556 1.475280 CTAGTTCACCCGATCCAACGA 59.525 52.381 0.00 0.00 35.09 3.85
3797 4557 0.902531 AGTTCACCCGATCCAACGAT 59.097 50.000 0.00 0.00 35.09 3.73
3798 4558 1.006832 GTTCACCCGATCCAACGATG 58.993 55.000 0.00 0.00 35.09 3.84
3801 4561 1.024046 CACCCGATCCAACGATGCAA 61.024 55.000 0.00 0.00 35.09 4.08
3802 4562 0.107214 ACCCGATCCAACGATGCAAT 60.107 50.000 0.00 0.00 35.09 3.56
3803 4563 1.024271 CCCGATCCAACGATGCAATT 58.976 50.000 0.00 0.00 35.09 2.32
3804 4564 2.217750 CCCGATCCAACGATGCAATTA 58.782 47.619 0.00 0.00 35.09 1.40
3805 4565 2.813754 CCCGATCCAACGATGCAATTAT 59.186 45.455 0.00 0.00 35.09 1.28
3806 4566 3.120199 CCCGATCCAACGATGCAATTATC 60.120 47.826 0.00 0.00 35.09 1.75
3807 4567 3.498018 CCGATCCAACGATGCAATTATCA 59.502 43.478 0.00 0.00 35.09 2.15
3809 4569 4.377738 CGATCCAACGATGCAATTATCAGG 60.378 45.833 0.00 0.00 35.09 3.86
3811 4571 2.951642 CCAACGATGCAATTATCAGGGT 59.048 45.455 0.00 0.00 0.00 4.34
3812 4572 3.003689 CCAACGATGCAATTATCAGGGTC 59.996 47.826 0.00 0.00 0.00 4.46
3813 4573 2.483876 ACGATGCAATTATCAGGGTCG 58.516 47.619 0.00 0.00 0.00 4.79
3829 4590 0.099791 GTCGCTCTCTACCACTGAGC 59.900 60.000 0.00 0.00 46.73 4.26
3835 4596 3.088532 CTCTCTACCACTGAGCAGAAGT 58.911 50.000 4.21 3.79 0.00 3.01
3837 4598 1.813178 TCTACCACTGAGCAGAAGTCG 59.187 52.381 4.21 0.00 0.00 4.18
3838 4599 1.813178 CTACCACTGAGCAGAAGTCGA 59.187 52.381 4.21 0.00 0.00 4.20
3839 4600 0.315568 ACCACTGAGCAGAAGTCGAC 59.684 55.000 7.70 7.70 0.00 4.20
3840 4601 0.315251 CCACTGAGCAGAAGTCGACA 59.685 55.000 19.50 0.00 0.00 4.35
3848 4677 0.869880 CAGAAGTCGACACACACGCA 60.870 55.000 19.50 0.00 0.00 5.24
3861 4690 3.723764 CACACACGCAAGAATAAACACAC 59.276 43.478 0.00 0.00 43.62 3.82
3865 4694 5.115472 CACACGCAAGAATAAACACACAATC 59.885 40.000 0.00 0.00 43.62 2.67
3888 4717 9.558396 AATCAAGAAAATTAACAGAAAATGGCA 57.442 25.926 0.00 0.00 0.00 4.92
3954 4787 4.018324 AGGAGGGTAAACAAGGATTCTTCC 60.018 45.833 0.00 0.00 42.96 3.46
3988 4821 8.147244 ACCATCTTAGGTTCACAAGTATACTT 57.853 34.615 12.50 12.50 39.34 2.24
4176 5013 1.926511 ATTTGCTGCTTCCCGCTTCG 61.927 55.000 0.00 0.00 40.11 3.79
4286 5124 2.264005 TGTGTGTTAAACGGGCAGAT 57.736 45.000 0.00 0.00 0.00 2.90
4432 5270 3.766545 TCTGCTTATTTTCTTGGCCTGT 58.233 40.909 3.32 0.00 0.00 4.00
4436 5274 7.116075 TCTGCTTATTTTCTTGGCCTGTTATA 58.884 34.615 3.32 0.00 0.00 0.98
4458 5296 3.740044 ACACAAACACAAGTCAACTCG 57.260 42.857 0.00 0.00 0.00 4.18
4499 5337 3.690460 AGGCCAGTTTTCAATCGAGAAT 58.310 40.909 5.01 0.00 0.00 2.40
4501 5339 5.440610 AGGCCAGTTTTCAATCGAGAATAT 58.559 37.500 5.01 0.00 0.00 1.28
4572 5410 8.680001 CAGTTATTGATCATGTCCATTTTCTCA 58.320 33.333 0.00 0.00 0.00 3.27
4584 5422 4.755123 TCCATTTTCTCACGAGGAAGTTTC 59.245 41.667 0.00 0.00 0.00 2.78
4596 5434 4.151689 CGAGGAAGTTTCGTTGAAATAGCA 59.848 41.667 0.00 0.00 33.97 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 170 4.037923 GCAGTCCAAAGAACAAATTCAGGA 59.962 41.667 0.00 0.00 37.29 3.86
228 247 4.617959 TCTGAAACTCCAAGTACGAACAG 58.382 43.478 0.00 0.00 0.00 3.16
280 299 1.678970 GCGCCATCCCCTCTGTTTT 60.679 57.895 0.00 0.00 0.00 2.43
962 1057 0.930310 CACTTCTGTGTCCGTGTGTG 59.070 55.000 0.00 0.00 39.24 3.82
999 1096 0.176219 CAATGAACATGGCCGCCATT 59.824 50.000 22.88 10.25 42.23 3.16
1013 1110 1.604308 CAGGTGGTGGCTGCAATGA 60.604 57.895 0.50 0.00 0.00 2.57
1027 1124 2.686835 GGAGGAGGAGCAGCAGGT 60.687 66.667 0.00 0.00 0.00 4.00
1030 1127 2.364842 GGAGGAGGAGGAGCAGCA 60.365 66.667 0.00 0.00 0.00 4.41
1031 1128 1.685355 GAAGGAGGAGGAGGAGCAGC 61.685 65.000 0.00 0.00 0.00 5.25
1037 1134 2.444895 CGGGGAAGGAGGAGGAGG 60.445 72.222 0.00 0.00 0.00 4.30
1067 1164 0.727398 GGAGTAAGTTGCGATGTGCC 59.273 55.000 0.00 0.00 45.60 5.01
1080 1177 2.872557 CGAGACGCACGGGAGTAA 59.127 61.111 0.00 0.00 44.67 2.24
1092 1189 1.535015 CGATGAAGAGGAAGGCGAGAC 60.535 57.143 0.00 0.00 0.00 3.36
1093 1190 0.741326 CGATGAAGAGGAAGGCGAGA 59.259 55.000 0.00 0.00 0.00 4.04
1095 1192 1.816537 CCGATGAAGAGGAAGGCGA 59.183 57.895 0.00 0.00 0.00 5.54
1096 1193 1.884926 GCCGATGAAGAGGAAGGCG 60.885 63.158 0.00 0.00 34.94 5.52
1230 1327 3.006967 ACAAAGACAAGACATCGGTAGCT 59.993 43.478 0.00 0.00 0.00 3.32
1231 1328 3.326747 ACAAAGACAAGACATCGGTAGC 58.673 45.455 0.00 0.00 0.00 3.58
1232 1329 3.927142 GGACAAAGACAAGACATCGGTAG 59.073 47.826 0.00 0.00 0.00 3.18
1233 1330 3.306502 GGGACAAAGACAAGACATCGGTA 60.307 47.826 0.00 0.00 0.00 4.02
1234 1331 2.550208 GGGACAAAGACAAGACATCGGT 60.550 50.000 0.00 0.00 0.00 4.69
1238 1335 1.780309 TGGGGGACAAAGACAAGACAT 59.220 47.619 0.00 0.00 0.00 3.06
1245 1342 1.603739 GGCAGTGGGGGACAAAGAC 60.604 63.158 0.00 0.00 0.00 3.01
1246 1343 2.840753 GGGCAGTGGGGGACAAAGA 61.841 63.158 0.00 0.00 0.00 2.52
1256 1353 2.987547 CACAAGCAGGGGCAGTGG 60.988 66.667 0.00 0.00 44.61 4.00
1257 1354 3.677648 GCACAAGCAGGGGCAGTG 61.678 66.667 0.00 7.59 45.43 3.66
1308 1405 2.110213 TTGCTCACCCACACGGAC 59.890 61.111 0.00 0.00 34.64 4.79
1309 1406 2.110213 GTTGCTCACCCACACGGA 59.890 61.111 0.00 0.00 34.64 4.69
1310 1407 2.978010 GGTTGCTCACCCACACGG 60.978 66.667 0.00 0.00 40.19 4.94
1318 1415 3.017442 GGAAAAGGGATAGGTTGCTCAC 58.983 50.000 0.00 0.00 0.00 3.51
1319 1416 2.025321 GGGAAAAGGGATAGGTTGCTCA 60.025 50.000 0.00 0.00 0.00 4.26
1320 1417 2.025321 TGGGAAAAGGGATAGGTTGCTC 60.025 50.000 0.00 0.00 0.00 4.26
1321 1418 2.000048 TGGGAAAAGGGATAGGTTGCT 59.000 47.619 0.00 0.00 0.00 3.91
1322 1419 2.525105 TGGGAAAAGGGATAGGTTGC 57.475 50.000 0.00 0.00 0.00 4.17
1323 1420 5.127682 CAGAATTGGGAAAAGGGATAGGTTG 59.872 44.000 0.00 0.00 0.00 3.77
1324 1421 5.222547 ACAGAATTGGGAAAAGGGATAGGTT 60.223 40.000 0.00 0.00 0.00 3.50
1326 1423 4.871822 ACAGAATTGGGAAAAGGGATAGG 58.128 43.478 0.00 0.00 0.00 2.57
1327 1424 5.358160 GTGACAGAATTGGGAAAAGGGATAG 59.642 44.000 0.00 0.00 0.00 2.08
1328 1425 5.261216 GTGACAGAATTGGGAAAAGGGATA 58.739 41.667 0.00 0.00 0.00 2.59
1329 1426 4.089361 GTGACAGAATTGGGAAAAGGGAT 58.911 43.478 0.00 0.00 0.00 3.85
1333 1438 4.022849 GTGAGGTGACAGAATTGGGAAAAG 60.023 45.833 0.00 0.00 0.00 2.27
1337 1442 2.038952 CTGTGAGGTGACAGAATTGGGA 59.961 50.000 0.00 0.00 45.39 4.37
1351 1456 4.280436 TGTTGGTAATGGTACTGTGAGG 57.720 45.455 0.00 0.00 0.00 3.86
1382 1487 9.796242 AGGTAGGGATATCAAGATTTCTATCAT 57.204 33.333 4.83 0.00 32.95 2.45
1383 1488 9.621239 AAGGTAGGGATATCAAGATTTCTATCA 57.379 33.333 4.83 0.00 32.95 2.15
1397 1502 1.692519 GTGTCGCCAAGGTAGGGATAT 59.307 52.381 0.00 0.00 0.00 1.63
1398 1503 1.117150 GTGTCGCCAAGGTAGGGATA 58.883 55.000 0.00 0.00 0.00 2.59
1401 1506 1.838073 AAGGTGTCGCCAAGGTAGGG 61.838 60.000 4.97 0.00 40.61 3.53
1413 1518 6.380190 CACACTGAAGTACTAGTAAGGTGTC 58.620 44.000 3.61 0.00 33.92 3.67
1436 1547 6.979817 GGTTTATTATGAAATCATGTGCAGCA 59.020 34.615 6.17 0.00 37.15 4.41
1437 1548 6.421801 GGGTTTATTATGAAATCATGTGCAGC 59.578 38.462 6.17 0.00 37.15 5.25
1438 1549 7.650504 CAGGGTTTATTATGAAATCATGTGCAG 59.349 37.037 6.17 0.00 37.15 4.41
1457 1568 9.379791 CGTTCTTCTTCTAATATAACAGGGTTT 57.620 33.333 0.00 0.00 0.00 3.27
1462 1573 7.169982 CCTGGCGTTCTTCTTCTAATATAACAG 59.830 40.741 0.00 0.00 0.00 3.16
1469 1580 2.092914 CCCCTGGCGTTCTTCTTCTAAT 60.093 50.000 0.00 0.00 0.00 1.73
1470 1581 1.278127 CCCCTGGCGTTCTTCTTCTAA 59.722 52.381 0.00 0.00 0.00 2.10
1473 1593 0.253327 ATCCCCTGGCGTTCTTCTTC 59.747 55.000 0.00 0.00 0.00 2.87
1485 1605 4.079787 TGGGTTTTCTGAATAGATCCCCTG 60.080 45.833 0.00 0.00 37.64 4.45
1493 1613 8.450578 TGCATATACTTGGGTTTTCTGAATAG 57.549 34.615 0.00 0.00 0.00 1.73
1522 1643 4.024302 AGACCGAGGAAAAGCTTAAAAACG 60.024 41.667 0.00 3.90 0.00 3.60
1527 1648 2.027469 GGGAGACCGAGGAAAAGCTTAA 60.027 50.000 0.00 0.00 43.64 1.85
1542 1663 3.876320 GAGAAATCAGCAAGATGGGAGAC 59.124 47.826 0.00 0.00 36.96 3.36
1555 1676 5.049336 CAGGAATGCATAGCTGAGAAATCAG 60.049 44.000 0.00 0.83 40.51 2.90
1556 1677 4.820173 CAGGAATGCATAGCTGAGAAATCA 59.180 41.667 0.00 0.00 0.00 2.57
1557 1678 4.320348 GCAGGAATGCATAGCTGAGAAATC 60.320 45.833 0.00 0.00 34.41 2.17
1558 1679 3.568853 GCAGGAATGCATAGCTGAGAAAT 59.431 43.478 0.00 0.00 34.41 2.17
1559 1680 2.947652 GCAGGAATGCATAGCTGAGAAA 59.052 45.455 0.00 0.00 34.41 2.52
1563 1684 0.178767 ACGCAGGAATGCATAGCTGA 59.821 50.000 0.00 0.00 34.41 4.26
1564 1685 1.528586 GTACGCAGGAATGCATAGCTG 59.471 52.381 0.00 2.29 34.41 4.24
1565 1686 1.541233 GGTACGCAGGAATGCATAGCT 60.541 52.381 0.00 0.00 29.81 3.32
1566 1687 0.868406 GGTACGCAGGAATGCATAGC 59.132 55.000 0.00 1.21 34.41 2.97
1567 1688 1.512926 GGGTACGCAGGAATGCATAG 58.487 55.000 0.00 0.00 34.41 2.23
1581 1717 1.670811 CAGATGCGTTTGATGGGGTAC 59.329 52.381 0.00 0.00 0.00 3.34
1590 1726 0.711670 GCAATGTGCAGATGCGTTTG 59.288 50.000 0.00 5.30 44.26 2.93
1642 1811 6.467047 CACAAACAGATAAACGCAGAATGATC 59.533 38.462 0.00 0.00 39.69 2.92
1643 1812 6.317088 CACAAACAGATAAACGCAGAATGAT 58.683 36.000 0.00 0.00 39.69 2.45
1644 1813 5.688823 CACAAACAGATAAACGCAGAATGA 58.311 37.500 0.00 0.00 39.69 2.57
1645 1814 4.321745 GCACAAACAGATAAACGCAGAATG 59.678 41.667 0.00 0.00 40.87 2.67
1646 1815 4.475944 GCACAAACAGATAAACGCAGAAT 58.524 39.130 0.00 0.00 0.00 2.40
1647 1816 3.304391 GGCACAAACAGATAAACGCAGAA 60.304 43.478 0.00 0.00 0.00 3.02
1648 1817 2.225491 GGCACAAACAGATAAACGCAGA 59.775 45.455 0.00 0.00 0.00 4.26
1649 1818 2.584791 GGCACAAACAGATAAACGCAG 58.415 47.619 0.00 0.00 0.00 5.18
1650 1819 1.268352 GGGCACAAACAGATAAACGCA 59.732 47.619 0.00 0.00 0.00 5.24
1651 1820 1.268352 TGGGCACAAACAGATAAACGC 59.732 47.619 0.00 0.00 0.00 4.84
1652 1821 3.848272 ATGGGCACAAACAGATAAACG 57.152 42.857 0.00 0.00 0.00 3.60
1653 1822 6.207691 ACATATGGGCACAAACAGATAAAC 57.792 37.500 7.80 0.00 0.00 2.01
1654 1823 6.849085 AACATATGGGCACAAACAGATAAA 57.151 33.333 7.80 0.00 0.00 1.40
1657 1826 6.606796 TGATTAACATATGGGCACAAACAGAT 59.393 34.615 7.80 0.00 0.00 2.90
1663 1832 6.379417 TGTTCATGATTAACATATGGGCACAA 59.621 34.615 7.80 0.00 37.46 3.33
1669 1838 7.572523 AGTGGTGTTCATGATTAACATATGG 57.427 36.000 7.80 0.00 38.95 2.74
1682 1851 5.250774 AGGGAAGTGTTATAGTGGTGTTCAT 59.749 40.000 0.00 0.00 0.00 2.57
1691 1865 6.068670 ACTTTTGCAAGGGAAGTGTTATAGT 58.931 36.000 12.97 0.00 33.82 2.12
1698 1872 3.573967 ACCATACTTTTGCAAGGGAAGTG 59.426 43.478 20.30 9.80 35.43 3.16
1705 1879 2.486203 TGCGGTACCATACTTTTGCAAG 59.514 45.455 13.54 0.00 35.92 4.01
1709 1883 5.354234 AGAAAGATGCGGTACCATACTTTTG 59.646 40.000 13.54 0.00 30.28 2.44
1710 1884 5.497474 AGAAAGATGCGGTACCATACTTTT 58.503 37.500 13.54 6.56 30.28 2.27
1712 1886 4.694339 GAGAAAGATGCGGTACCATACTT 58.306 43.478 13.54 8.55 0.00 2.24
1713 1887 3.243434 CGAGAAAGATGCGGTACCATACT 60.243 47.826 13.54 2.44 0.00 2.12
1714 1888 3.050619 CGAGAAAGATGCGGTACCATAC 58.949 50.000 13.54 0.78 0.00 2.39
1716 1890 1.754803 TCGAGAAAGATGCGGTACCAT 59.245 47.619 13.54 0.00 0.00 3.55
1717 1891 1.179152 TCGAGAAAGATGCGGTACCA 58.821 50.000 13.54 0.00 0.00 3.25
1718 1892 2.395654 GATCGAGAAAGATGCGGTACC 58.604 52.381 0.16 0.16 0.00 3.34
1720 1894 1.944709 TCGATCGAGAAAGATGCGGTA 59.055 47.619 15.15 0.00 0.00 4.02
1721 1895 0.738975 TCGATCGAGAAAGATGCGGT 59.261 50.000 15.15 0.00 0.00 5.68
1729 1903 5.410924 ACATGTCATCTTTCGATCGAGAAA 58.589 37.500 18.54 9.90 37.74 2.52
1730 1904 4.998788 ACATGTCATCTTTCGATCGAGAA 58.001 39.130 18.54 13.84 0.00 2.87
1731 1905 4.639135 ACATGTCATCTTTCGATCGAGA 57.361 40.909 18.54 13.27 0.00 4.04
1733 1907 4.733405 CGTAACATGTCATCTTTCGATCGA 59.267 41.667 15.15 15.15 0.00 3.59
1734 1908 4.733405 TCGTAACATGTCATCTTTCGATCG 59.267 41.667 9.36 9.36 0.00 3.69
1736 1910 5.891451 TCTCGTAACATGTCATCTTTCGAT 58.109 37.500 0.00 0.00 0.00 3.59
1737 1911 5.305139 TCTCGTAACATGTCATCTTTCGA 57.695 39.130 0.00 0.00 0.00 3.71
1738 1912 6.575083 AATCTCGTAACATGTCATCTTTCG 57.425 37.500 0.00 0.00 0.00 3.46
1739 1913 9.855361 CATAAATCTCGTAACATGTCATCTTTC 57.145 33.333 0.00 0.00 0.00 2.62
1740 1914 8.338259 GCATAAATCTCGTAACATGTCATCTTT 58.662 33.333 0.00 0.00 0.00 2.52
1755 2226 9.539825 AGGCTATATTATGAAGCATAAATCTCG 57.460 33.333 4.21 0.00 39.34 4.04
1763 2234 8.946797 AAGGAAAAGGCTATATTATGAAGCAT 57.053 30.769 0.00 0.00 38.01 3.79
1770 2241 9.809395 GGGACTAAAAGGAAAAGGCTATATTAT 57.191 33.333 0.00 0.00 0.00 1.28
1771 2242 7.935210 CGGGACTAAAAGGAAAAGGCTATATTA 59.065 37.037 0.00 0.00 0.00 0.98
1772 2243 6.771267 CGGGACTAAAAGGAAAAGGCTATATT 59.229 38.462 0.00 0.00 0.00 1.28
1773 2244 6.100714 TCGGGACTAAAAGGAAAAGGCTATAT 59.899 38.462 0.00 0.00 0.00 0.86
1774 2245 5.426185 TCGGGACTAAAAGGAAAAGGCTATA 59.574 40.000 0.00 0.00 0.00 1.31
1777 2248 2.374170 TCGGGACTAAAAGGAAAAGGCT 59.626 45.455 0.00 0.00 0.00 4.58
1778 2249 2.786777 TCGGGACTAAAAGGAAAAGGC 58.213 47.619 0.00 0.00 0.00 4.35
1779 2250 3.504906 GGTTCGGGACTAAAAGGAAAAGG 59.495 47.826 0.00 0.00 0.00 3.11
1780 2251 4.023450 GTGGTTCGGGACTAAAAGGAAAAG 60.023 45.833 0.00 0.00 0.00 2.27
1781 2252 3.884693 GTGGTTCGGGACTAAAAGGAAAA 59.115 43.478 0.00 0.00 0.00 2.29
1782 2253 3.117963 TGTGGTTCGGGACTAAAAGGAAA 60.118 43.478 0.00 0.00 0.00 3.13
1784 2255 2.048601 TGTGGTTCGGGACTAAAAGGA 58.951 47.619 0.00 0.00 0.00 3.36
1785 2256 2.554370 TGTGGTTCGGGACTAAAAGG 57.446 50.000 0.00 0.00 0.00 3.11
1786 2257 3.188460 CACATGTGGTTCGGGACTAAAAG 59.812 47.826 18.51 0.00 0.00 2.27
1788 2259 2.105134 ACACATGTGGTTCGGGACTAAA 59.895 45.455 28.64 0.00 34.19 1.85
1789 2260 1.695242 ACACATGTGGTTCGGGACTAA 59.305 47.619 28.64 0.00 34.19 2.24
1792 2276 1.852067 GCACACATGTGGTTCGGGAC 61.852 60.000 28.64 5.96 45.72 4.46
1796 2280 1.665679 GATAGGCACACATGTGGTTCG 59.334 52.381 28.64 15.10 45.72 3.95
1803 2287 2.320745 TGCAGAGATAGGCACACATG 57.679 50.000 0.00 0.00 34.58 3.21
1806 2290 1.012841 GCTTGCAGAGATAGGCACAC 58.987 55.000 0.00 0.00 40.23 3.82
1811 2295 5.105392 CCTTATAGGAGCTTGCAGAGATAGG 60.105 48.000 0.00 0.00 37.67 2.57
1812 2296 5.105392 CCCTTATAGGAGCTTGCAGAGATAG 60.105 48.000 0.00 0.00 37.67 2.08
1814 2298 3.582208 CCCTTATAGGAGCTTGCAGAGAT 59.418 47.826 0.00 0.00 37.67 2.75
1821 2309 6.155393 CCTCTTATACCCCTTATAGGAGCTTG 59.845 46.154 0.00 0.00 42.04 4.01
1832 2320 3.297736 CGACTGACCTCTTATACCCCTT 58.702 50.000 0.00 0.00 0.00 3.95
1835 2323 2.029623 TGCGACTGACCTCTTATACCC 58.970 52.381 0.00 0.00 0.00 3.69
1836 2324 3.795623 TTGCGACTGACCTCTTATACC 57.204 47.619 0.00 0.00 0.00 2.73
1864 2352 7.576649 AGATATCCACCTCTTATACCCCTTTTT 59.423 37.037 0.00 0.00 0.00 1.94
1865 2353 7.017651 CAGATATCCACCTCTTATACCCCTTTT 59.982 40.741 0.00 0.00 0.00 2.27
1866 2354 6.502158 CAGATATCCACCTCTTATACCCCTTT 59.498 42.308 0.00 0.00 0.00 3.11
1867 2355 6.026186 CAGATATCCACCTCTTATACCCCTT 58.974 44.000 0.00 0.00 0.00 3.95
1868 2356 5.078006 ACAGATATCCACCTCTTATACCCCT 59.922 44.000 0.00 0.00 0.00 4.79
1869 2357 5.342866 ACAGATATCCACCTCTTATACCCC 58.657 45.833 0.00 0.00 0.00 4.95
1870 2358 6.350277 CGAACAGATATCCACCTCTTATACCC 60.350 46.154 0.00 0.00 0.00 3.69
1871 2359 6.208994 ACGAACAGATATCCACCTCTTATACC 59.791 42.308 0.00 0.00 0.00 2.73
1872 2360 7.216973 ACGAACAGATATCCACCTCTTATAC 57.783 40.000 0.00 0.00 0.00 1.47
1873 2361 7.834881 AACGAACAGATATCCACCTCTTATA 57.165 36.000 0.00 0.00 0.00 0.98
1874 2362 6.732896 AACGAACAGATATCCACCTCTTAT 57.267 37.500 0.00 0.00 0.00 1.73
1875 2363 7.417116 GGTTAACGAACAGATATCCACCTCTTA 60.417 40.741 0.00 0.00 37.29 2.10
1876 2364 6.338937 GTTAACGAACAGATATCCACCTCTT 58.661 40.000 0.00 0.00 35.48 2.85
1877 2365 5.163437 GGTTAACGAACAGATATCCACCTCT 60.163 44.000 0.00 0.00 37.29 3.69
1878 2366 5.048507 GGTTAACGAACAGATATCCACCTC 58.951 45.833 0.00 0.00 37.29 3.85
1879 2367 4.715297 AGGTTAACGAACAGATATCCACCT 59.285 41.667 0.00 0.00 37.29 4.00
1880 2368 5.019785 AGGTTAACGAACAGATATCCACC 57.980 43.478 0.00 0.00 37.29 4.61
1881 2369 6.696148 CAGTAGGTTAACGAACAGATATCCAC 59.304 42.308 10.49 0.00 37.29 4.02
1882 2370 6.604396 TCAGTAGGTTAACGAACAGATATCCA 59.396 38.462 10.49 0.00 37.29 3.41
1883 2371 7.035840 TCAGTAGGTTAACGAACAGATATCC 57.964 40.000 10.49 0.00 37.29 2.59
1884 2372 8.922058 TTTCAGTAGGTTAACGAACAGATATC 57.078 34.615 10.49 0.00 37.29 1.63
1885 2373 9.148104 GTTTTCAGTAGGTTAACGAACAGATAT 57.852 33.333 10.49 0.00 37.29 1.63
1886 2374 8.362639 AGTTTTCAGTAGGTTAACGAACAGATA 58.637 33.333 10.49 2.55 37.29 1.98
1887 2375 7.215085 AGTTTTCAGTAGGTTAACGAACAGAT 58.785 34.615 10.49 0.00 37.29 2.90
1888 2376 6.576185 AGTTTTCAGTAGGTTAACGAACAGA 58.424 36.000 10.49 6.02 37.29 3.41
1889 2377 6.073927 GGAGTTTTCAGTAGGTTAACGAACAG 60.074 42.308 10.49 4.10 37.29 3.16
1890 2378 5.754890 GGAGTTTTCAGTAGGTTAACGAACA 59.245 40.000 10.49 0.00 37.29 3.18
1891 2379 5.178252 GGGAGTTTTCAGTAGGTTAACGAAC 59.822 44.000 0.00 0.24 34.56 3.95
1892 2380 5.299949 GGGAGTTTTCAGTAGGTTAACGAA 58.700 41.667 0.00 0.00 0.00 3.85
1893 2381 4.262592 GGGGAGTTTTCAGTAGGTTAACGA 60.263 45.833 0.00 0.00 0.00 3.85
1894 2382 3.999001 GGGGAGTTTTCAGTAGGTTAACG 59.001 47.826 0.00 0.00 0.00 3.18
1900 2388 3.328050 ACAGAAGGGGAGTTTTCAGTAGG 59.672 47.826 0.00 0.00 0.00 3.18
1901 2389 4.040461 TCACAGAAGGGGAGTTTTCAGTAG 59.960 45.833 0.00 0.00 0.00 2.57
1903 2391 2.777692 TCACAGAAGGGGAGTTTTCAGT 59.222 45.455 0.00 0.00 0.00 3.41
1913 2401 1.065126 GGAGTGGATTCACAGAAGGGG 60.065 57.143 6.96 0.00 45.91 4.79
1914 2402 1.630369 TGGAGTGGATTCACAGAAGGG 59.370 52.381 6.96 0.00 45.91 3.95
1929 2417 3.244457 CGGAGGGAGTAAAAGTTTGGAGT 60.244 47.826 0.00 0.00 0.00 3.85
1935 2423 1.627329 GGGACGGAGGGAGTAAAAGTT 59.373 52.381 0.00 0.00 0.00 2.66
1936 2424 1.273759 GGGACGGAGGGAGTAAAAGT 58.726 55.000 0.00 0.00 0.00 2.66
1937 2425 1.272807 TGGGACGGAGGGAGTAAAAG 58.727 55.000 0.00 0.00 0.00 2.27
1941 2429 3.140707 TGTATTATGGGACGGAGGGAGTA 59.859 47.826 0.00 0.00 0.00 2.59
1942 2430 2.090943 TGTATTATGGGACGGAGGGAGT 60.091 50.000 0.00 0.00 0.00 3.85
1943 2431 2.605257 TGTATTATGGGACGGAGGGAG 58.395 52.381 0.00 0.00 0.00 4.30
1944 2432 2.779429 TGTATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
1945 2433 2.969950 TCTTGTATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
1946 2434 4.891992 ATCTTGTATTATGGGACGGAGG 57.108 45.455 0.00 0.00 0.00 4.30
1947 2435 9.751542 GATAATATCTTGTATTATGGGACGGAG 57.248 37.037 5.34 0.00 32.14 4.63
1948 2436 9.262240 TGATAATATCTTGTATTATGGGACGGA 57.738 33.333 1.66 0.00 32.14 4.69
1971 2459 9.790297 ATCTAGTCCCTACATATTGGTTATGAT 57.210 33.333 0.00 0.00 40.22 2.45
1974 2462 9.186837 CGTATCTAGTCCCTACATATTGGTTAT 57.813 37.037 0.00 0.00 0.00 1.89
1975 2463 8.385491 TCGTATCTAGTCCCTACATATTGGTTA 58.615 37.037 0.00 0.00 0.00 2.85
1976 2464 7.236529 TCGTATCTAGTCCCTACATATTGGTT 58.763 38.462 0.00 0.00 0.00 3.67
1977 2465 6.787170 TCGTATCTAGTCCCTACATATTGGT 58.213 40.000 0.00 0.00 0.00 3.67
1978 2466 7.339721 ACATCGTATCTAGTCCCTACATATTGG 59.660 40.741 0.00 0.00 0.00 3.16
1979 2467 8.282455 ACATCGTATCTAGTCCCTACATATTG 57.718 38.462 0.00 0.00 0.00 1.90
1980 2468 8.740906 CAACATCGTATCTAGTCCCTACATATT 58.259 37.037 0.00 0.00 0.00 1.28
1981 2469 7.339721 CCAACATCGTATCTAGTCCCTACATAT 59.660 40.741 0.00 0.00 0.00 1.78
1982 2470 6.657966 CCAACATCGTATCTAGTCCCTACATA 59.342 42.308 0.00 0.00 0.00 2.29
1983 2471 5.477291 CCAACATCGTATCTAGTCCCTACAT 59.523 44.000 0.00 0.00 0.00 2.29
1984 2472 4.825634 CCAACATCGTATCTAGTCCCTACA 59.174 45.833 0.00 0.00 0.00 2.74
1985 2473 5.068636 TCCAACATCGTATCTAGTCCCTAC 58.931 45.833 0.00 0.00 0.00 3.18
1986 2474 5.314718 TCCAACATCGTATCTAGTCCCTA 57.685 43.478 0.00 0.00 0.00 3.53
1987 2475 4.180377 TCCAACATCGTATCTAGTCCCT 57.820 45.455 0.00 0.00 0.00 4.20
1988 2476 4.931661 TTCCAACATCGTATCTAGTCCC 57.068 45.455 0.00 0.00 0.00 4.46
1989 2477 8.926710 CATATTTTCCAACATCGTATCTAGTCC 58.073 37.037 0.00 0.00 0.00 3.85
1993 2481 7.095229 GCTGCATATTTTCCAACATCGTATCTA 60.095 37.037 0.00 0.00 0.00 1.98
1994 2482 6.293626 GCTGCATATTTTCCAACATCGTATCT 60.294 38.462 0.00 0.00 0.00 1.98
1997 2485 4.881273 AGCTGCATATTTTCCAACATCGTA 59.119 37.500 1.02 0.00 0.00 3.43
2000 2488 5.413499 ACAAGCTGCATATTTTCCAACATC 58.587 37.500 1.02 0.00 0.00 3.06
2013 2501 1.527034 AACGACATGACAAGCTGCAT 58.473 45.000 0.00 0.00 0.00 3.96
2016 2504 8.673626 ATTATTTTTAACGACATGACAAGCTG 57.326 30.769 0.00 0.00 0.00 4.24
2059 2547 8.299570 CCGTTTGTATCGGTAAACTATATAGGT 58.700 37.037 14.25 4.38 42.62 3.08
2060 2548 8.514594 TCCGTTTGTATCGGTAAACTATATAGG 58.485 37.037 14.25 0.00 46.86 2.57
2062 2550 9.283768 TCTCCGTTTGTATCGGTAAACTATATA 57.716 33.333 4.36 0.00 46.86 0.86
2104 2592 0.036732 TGCCAAGCTTTCCGATGTCT 59.963 50.000 0.00 0.00 0.00 3.41
2110 2598 1.131883 CTCTCAATGCCAAGCTTTCCG 59.868 52.381 0.00 0.00 0.00 4.30
2152 2640 0.108186 GCAGGGACATGTCATCGACA 60.108 55.000 26.47 0.00 46.90 4.35
2218 2706 0.174845 CCCTGTCGAATAGCGTTCCA 59.825 55.000 0.00 0.00 41.80 3.53
2221 2709 3.056322 ACTTAACCCTGTCGAATAGCGTT 60.056 43.478 6.33 6.33 41.80 4.84
2266 2754 1.940613 GCCCGCTACTGAATTACCAAG 59.059 52.381 0.00 0.00 0.00 3.61
2270 2758 0.103572 TCCGCCCGCTACTGAATTAC 59.896 55.000 0.00 0.00 0.00 1.89
2273 2761 2.017559 GAGTCCGCCCGCTACTGAAT 62.018 60.000 0.00 0.00 0.00 2.57
2274 2762 2.678934 AGTCCGCCCGCTACTGAA 60.679 61.111 0.00 0.00 0.00 3.02
2308 2796 3.638627 ACAATGAGATGAGTGAGCGGATA 59.361 43.478 0.00 0.00 0.00 2.59
2312 2800 4.176271 TGTAACAATGAGATGAGTGAGCG 58.824 43.478 0.00 0.00 0.00 5.03
2314 2802 5.728471 ACCTGTAACAATGAGATGAGTGAG 58.272 41.667 0.00 0.00 0.00 3.51
2316 2804 5.934043 TGAACCTGTAACAATGAGATGAGTG 59.066 40.000 0.00 0.00 0.00 3.51
2321 2809 6.092670 CGTCAATGAACCTGTAACAATGAGAT 59.907 38.462 0.00 0.00 0.00 2.75
2323 2811 5.408299 TCGTCAATGAACCTGTAACAATGAG 59.592 40.000 0.00 0.00 0.00 2.90
2324 2812 5.301555 TCGTCAATGAACCTGTAACAATGA 58.698 37.500 0.00 0.00 0.00 2.57
2327 2815 4.062293 CCTCGTCAATGAACCTGTAACAA 58.938 43.478 0.00 0.00 0.00 2.83
2342 2830 0.608130 CCACCAACTGATCCTCGTCA 59.392 55.000 0.00 0.00 0.00 4.35
2345 2833 0.608130 TCACCACCAACTGATCCTCG 59.392 55.000 0.00 0.00 0.00 4.63
2366 2854 2.992543 CTCTTGCTCGACTTTCTTCAGG 59.007 50.000 0.00 0.00 0.00 3.86
2414 2902 1.272092 CCAGCAGTGAGGGATTTCCAA 60.272 52.381 0.00 0.00 38.24 3.53
2423 2911 0.392193 GTGTGATCCCAGCAGTGAGG 60.392 60.000 0.00 0.00 0.00 3.86
2453 2941 1.139058 ACTATGTGAACGCTGATCCCC 59.861 52.381 0.00 0.00 0.00 4.81
2459 2947 2.157668 GTCACCAACTATGTGAACGCTG 59.842 50.000 0.00 0.00 43.82 5.18
2477 2965 3.317149 CCTCGTTAATATCCGTGGAGTCA 59.683 47.826 0.00 0.00 39.42 3.41
2492 2980 0.179156 CTTTAGCGACCGCCTCGTTA 60.179 55.000 11.03 0.00 44.92 3.18
2570 3058 3.119388 GCAGCAGAAACAAGGATGCAATA 60.119 43.478 0.00 0.00 42.99 1.90
2684 3176 2.543445 CGCAGCAAAACACATTTCAGGA 60.543 45.455 0.00 0.00 0.00 3.86
2721 3213 2.549754 CAGCTCACTTGTACAAACTGGG 59.450 50.000 10.03 8.86 0.00 4.45
2730 3222 3.441922 CACTCTCTAGCAGCTCACTTGTA 59.558 47.826 0.00 0.00 0.00 2.41
2772 3264 2.350388 GCACCAAAATGACGTACAGGTG 60.350 50.000 14.15 14.15 41.23 4.00
2800 3292 3.936902 TTAGCACCGAAATGAATACGC 57.063 42.857 0.00 0.00 0.00 4.42
2867 3440 2.188731 GCCGCCCCTACAGGTAAC 59.811 66.667 0.00 0.00 0.00 2.50
2948 3521 5.939764 AGCTCCAAAGAAAAAGAAAACCT 57.060 34.783 0.00 0.00 0.00 3.50
2987 3561 6.364165 CACATTTTTACTTGGCAAGTGATCAG 59.636 38.462 36.40 24.16 42.84 2.90
3001 3575 4.111916 GCTGCAACACACACATTTTTACT 58.888 39.130 0.00 0.00 0.00 2.24
3113 3688 1.890510 GGACACCGACAACCACACC 60.891 63.158 0.00 0.00 0.00 4.16
3178 3753 3.243201 GCAGGTCAACAAAGAAGAACCAG 60.243 47.826 0.00 0.00 0.00 4.00
3188 3763 1.541147 GCATAGCAGCAGGTCAACAAA 59.459 47.619 0.00 0.00 0.00 2.83
3192 3767 0.325933 ACAGCATAGCAGCAGGTCAA 59.674 50.000 0.00 0.00 36.85 3.18
3292 3870 0.250858 CCAGCTTCACCACCACATCA 60.251 55.000 0.00 0.00 0.00 3.07
3405 3983 5.447279 GGAATCTAAATGTAGTGGTGTTGCG 60.447 44.000 0.00 0.00 0.00 4.85
3406 3984 5.163652 GGGAATCTAAATGTAGTGGTGTTGC 60.164 44.000 0.00 0.00 0.00 4.17
3407 3985 6.180472 AGGGAATCTAAATGTAGTGGTGTTG 58.820 40.000 0.00 0.00 0.00 3.33
3408 3986 6.388619 AGGGAATCTAAATGTAGTGGTGTT 57.611 37.500 0.00 0.00 0.00 3.32
3411 3989 6.884836 GTGAAAGGGAATCTAAATGTAGTGGT 59.115 38.462 0.00 0.00 0.00 4.16
3412 3990 7.112779 AGTGAAAGGGAATCTAAATGTAGTGG 58.887 38.462 0.00 0.00 0.00 4.00
3413 3991 9.319143 CTAGTGAAAGGGAATCTAAATGTAGTG 57.681 37.037 0.00 0.00 0.00 2.74
3414 3992 8.487028 CCTAGTGAAAGGGAATCTAAATGTAGT 58.513 37.037 0.00 0.00 32.55 2.73
3416 3994 8.265055 CACCTAGTGAAAGGGAATCTAAATGTA 58.735 37.037 0.00 0.00 41.32 2.29
3417 3995 7.112779 CACCTAGTGAAAGGGAATCTAAATGT 58.887 38.462 0.00 0.00 41.32 2.71
3419 3997 6.122964 GCACCTAGTGAAAGGGAATCTAAAT 58.877 40.000 0.00 0.00 41.32 1.40
3420 3998 5.013704 TGCACCTAGTGAAAGGGAATCTAAA 59.986 40.000 0.00 0.00 41.32 1.85
3436 4160 6.441093 TTTTTCTTGCAGATATGCACCTAG 57.559 37.500 15.91 10.35 45.32 3.02
3468 4192 4.727235 GGTTTCTTACCAAACACTCGAG 57.273 45.455 11.84 11.84 46.92 4.04
3480 4204 7.114953 GCAAATTTTGTCTGCTAGGTTTCTTAC 59.885 37.037 10.65 0.00 33.20 2.34
3481 4205 7.145323 GCAAATTTTGTCTGCTAGGTTTCTTA 58.855 34.615 10.65 0.00 33.20 2.10
3482 4206 5.985530 GCAAATTTTGTCTGCTAGGTTTCTT 59.014 36.000 10.65 0.00 33.20 2.52
3483 4207 5.509670 GGCAAATTTTGTCTGCTAGGTTTCT 60.510 40.000 10.65 0.00 36.32 2.52
3484 4208 4.686091 GGCAAATTTTGTCTGCTAGGTTTC 59.314 41.667 10.65 0.00 36.32 2.78
3485 4209 4.100808 TGGCAAATTTTGTCTGCTAGGTTT 59.899 37.500 14.34 0.00 35.94 3.27
3486 4210 3.640967 TGGCAAATTTTGTCTGCTAGGTT 59.359 39.130 14.34 0.00 35.94 3.50
3487 4211 3.005791 GTGGCAAATTTTGTCTGCTAGGT 59.994 43.478 14.34 0.00 35.94 3.08
3488 4212 3.256631 AGTGGCAAATTTTGTCTGCTAGG 59.743 43.478 14.34 0.00 35.94 3.02
3489 4213 4.022935 TCAGTGGCAAATTTTGTCTGCTAG 60.023 41.667 14.34 7.98 35.94 3.42
3490 4214 3.888323 TCAGTGGCAAATTTTGTCTGCTA 59.112 39.130 14.34 0.00 35.94 3.49
3491 4215 2.694628 TCAGTGGCAAATTTTGTCTGCT 59.305 40.909 14.34 9.66 35.94 4.24
3492 4216 3.096489 TCAGTGGCAAATTTTGTCTGC 57.904 42.857 14.34 7.76 35.94 4.26
3493 4217 5.049954 CCAAATCAGTGGCAAATTTTGTCTG 60.050 40.000 14.34 15.90 35.94 3.51
3494 4218 5.058490 CCAAATCAGTGGCAAATTTTGTCT 58.942 37.500 14.34 6.56 35.94 3.41
3495 4219 4.815846 ACCAAATCAGTGGCAAATTTTGTC 59.184 37.500 6.79 6.79 43.00 3.18
3496 4220 4.575645 CACCAAATCAGTGGCAAATTTTGT 59.424 37.500 10.65 0.00 43.00 2.83
3497 4221 4.575645 ACACCAAATCAGTGGCAAATTTTG 59.424 37.500 4.72 4.72 43.00 2.44
3498 4222 4.779696 ACACCAAATCAGTGGCAAATTTT 58.220 34.783 0.00 0.00 43.00 1.82
3499 4223 4.420522 ACACCAAATCAGTGGCAAATTT 57.579 36.364 0.00 0.00 43.00 1.82
3500 4224 4.128643 CAACACCAAATCAGTGGCAAATT 58.871 39.130 0.00 0.00 43.00 1.82
3501 4225 3.494749 CCAACACCAAATCAGTGGCAAAT 60.495 43.478 0.00 0.00 43.00 2.32
3502 4226 2.158986 CCAACACCAAATCAGTGGCAAA 60.159 45.455 0.00 0.00 43.00 3.68
3503 4227 1.411977 CCAACACCAAATCAGTGGCAA 59.588 47.619 0.00 0.00 43.00 4.52
3504 4228 1.039068 CCAACACCAAATCAGTGGCA 58.961 50.000 0.00 0.00 43.00 4.92
3505 4229 1.327303 TCCAACACCAAATCAGTGGC 58.673 50.000 0.00 0.00 43.00 5.01
3506 4230 3.306225 CCATTCCAACACCAAATCAGTGG 60.306 47.826 0.00 0.00 44.92 4.00
3507 4231 3.861886 GCCATTCCAACACCAAATCAGTG 60.862 47.826 0.00 0.00 41.15 3.66
3508 4232 2.299867 GCCATTCCAACACCAAATCAGT 59.700 45.455 0.00 0.00 0.00 3.41
3509 4233 2.299582 TGCCATTCCAACACCAAATCAG 59.700 45.455 0.00 0.00 0.00 2.90
3510 4234 2.299582 CTGCCATTCCAACACCAAATCA 59.700 45.455 0.00 0.00 0.00 2.57
3511 4235 2.354003 CCTGCCATTCCAACACCAAATC 60.354 50.000 0.00 0.00 0.00 2.17
3512 4236 1.624813 CCTGCCATTCCAACACCAAAT 59.375 47.619 0.00 0.00 0.00 2.32
3513 4237 1.047002 CCTGCCATTCCAACACCAAA 58.953 50.000 0.00 0.00 0.00 3.28
3514 4238 0.831288 CCCTGCCATTCCAACACCAA 60.831 55.000 0.00 0.00 0.00 3.67
3515 4239 1.228831 CCCTGCCATTCCAACACCA 60.229 57.895 0.00 0.00 0.00 4.17
3516 4240 0.541764 TTCCCTGCCATTCCAACACC 60.542 55.000 0.00 0.00 0.00 4.16
3688 4421 3.331150 TGTGTACATCCTTAAGCAACGG 58.669 45.455 0.00 0.00 0.00 4.44
3698 4431 0.035056 GGCAGGCTTGTGTACATCCT 60.035 55.000 0.00 0.92 31.97 3.24
3719 4452 3.057526 AGAGTATTTTTCCCGCTTTGCAC 60.058 43.478 0.00 0.00 0.00 4.57
3720 4453 3.153919 AGAGTATTTTTCCCGCTTTGCA 58.846 40.909 0.00 0.00 0.00 4.08
3721 4454 3.850122 AGAGTATTTTTCCCGCTTTGC 57.150 42.857 0.00 0.00 0.00 3.68
3722 4455 7.535139 TGAATAAGAGTATTTTTCCCGCTTTG 58.465 34.615 0.00 0.00 29.69 2.77
3723 4456 7.148069 CCTGAATAAGAGTATTTTTCCCGCTTT 60.148 37.037 0.00 0.00 29.69 3.51
3725 4458 5.823045 CCTGAATAAGAGTATTTTTCCCGCT 59.177 40.000 0.00 0.00 29.69 5.52
3726 4459 5.820947 TCCTGAATAAGAGTATTTTTCCCGC 59.179 40.000 0.00 0.00 29.69 6.13
3728 4461 7.116736 TGGTCCTGAATAAGAGTATTTTTCCC 58.883 38.462 0.00 0.00 29.69 3.97
3729 4462 8.575649 TTGGTCCTGAATAAGAGTATTTTTCC 57.424 34.615 0.00 0.00 29.69 3.13
3731 4464 9.454859 CTCTTGGTCCTGAATAAGAGTATTTTT 57.545 33.333 7.47 0.00 40.59 1.94
3771 4530 2.025226 TGGATCGGGTGAACTAGAGAGT 60.025 50.000 0.00 0.00 37.59 3.24
3779 4539 1.006832 CATCGTTGGATCGGGTGAAC 58.993 55.000 0.00 0.00 0.00 3.18
3788 4548 3.822735 CCCTGATAATTGCATCGTTGGAT 59.177 43.478 0.00 0.00 0.00 3.41
3789 4549 3.213506 CCCTGATAATTGCATCGTTGGA 58.786 45.455 0.00 0.00 0.00 3.53
3790 4550 2.951642 ACCCTGATAATTGCATCGTTGG 59.048 45.455 0.00 0.00 0.00 3.77
3791 4551 3.303329 CGACCCTGATAATTGCATCGTTG 60.303 47.826 0.00 0.00 0.00 4.10
3792 4552 2.872245 CGACCCTGATAATTGCATCGTT 59.128 45.455 0.00 0.00 0.00 3.85
3794 4554 1.195448 GCGACCCTGATAATTGCATCG 59.805 52.381 0.00 0.00 0.00 3.84
3795 4555 2.481952 GAGCGACCCTGATAATTGCATC 59.518 50.000 0.00 0.00 0.00 3.91
3796 4556 2.105477 AGAGCGACCCTGATAATTGCAT 59.895 45.455 0.00 0.00 0.00 3.96
3797 4557 1.486310 AGAGCGACCCTGATAATTGCA 59.514 47.619 0.00 0.00 0.00 4.08
3798 4558 2.139118 GAGAGCGACCCTGATAATTGC 58.861 52.381 0.00 0.00 0.00 3.56
3801 4561 3.158676 GGTAGAGAGCGACCCTGATAAT 58.841 50.000 0.00 0.00 34.09 1.28
3802 4562 2.092049 TGGTAGAGAGCGACCCTGATAA 60.092 50.000 0.00 0.00 38.86 1.75
3803 4563 1.493446 TGGTAGAGAGCGACCCTGATA 59.507 52.381 0.00 0.00 38.86 2.15
3804 4564 0.259065 TGGTAGAGAGCGACCCTGAT 59.741 55.000 0.00 0.00 38.86 2.90
3805 4565 0.680280 GTGGTAGAGAGCGACCCTGA 60.680 60.000 0.00 0.00 38.86 3.86
3806 4566 0.681564 AGTGGTAGAGAGCGACCCTG 60.682 60.000 0.00 0.00 38.86 4.45
3807 4567 0.681564 CAGTGGTAGAGAGCGACCCT 60.682 60.000 0.00 0.00 38.86 4.34
3809 4569 0.736053 CTCAGTGGTAGAGAGCGACC 59.264 60.000 0.00 0.00 39.92 4.79
3811 4571 2.483441 GCTCAGTGGTAGAGAGCGA 58.517 57.895 0.00 0.00 44.37 4.93
3829 4590 0.869880 TGCGTGTGTGTCGACTTCTG 60.870 55.000 17.92 3.11 0.00 3.02
3830 4591 0.179121 TTGCGTGTGTGTCGACTTCT 60.179 50.000 17.92 0.00 0.00 2.85
3831 4592 0.229753 CTTGCGTGTGTGTCGACTTC 59.770 55.000 17.92 10.45 0.00 3.01
3832 4593 0.179121 TCTTGCGTGTGTGTCGACTT 60.179 50.000 17.92 0.00 0.00 3.01
3833 4594 0.179121 TTCTTGCGTGTGTGTCGACT 60.179 50.000 17.92 0.00 0.00 4.18
3835 4596 2.425578 TATTCTTGCGTGTGTGTCGA 57.574 45.000 0.00 0.00 0.00 4.20
3837 4598 3.966218 GTGTTTATTCTTGCGTGTGTGTC 59.034 43.478 0.00 0.00 0.00 3.67
3838 4599 3.375610 TGTGTTTATTCTTGCGTGTGTGT 59.624 39.130 0.00 0.00 0.00 3.72
3839 4600 3.723764 GTGTGTTTATTCTTGCGTGTGTG 59.276 43.478 0.00 0.00 0.00 3.82
3840 4601 3.375610 TGTGTGTTTATTCTTGCGTGTGT 59.624 39.130 0.00 0.00 0.00 3.72
3861 4690 9.815936 GCCATTTTCTGTTAATTTTCTTGATTG 57.184 29.630 0.00 0.00 0.00 2.67
3924 4757 4.661709 TCCTTGTTTACCCTCCTAGTTTGT 59.338 41.667 0.00 0.00 0.00 2.83
3954 4787 3.739401 ACCTAAGATGGTTTCAAGGGG 57.261 47.619 0.00 0.00 36.89 4.79
4286 5124 4.371786 CGCTGTTAGCTCCTGATTCATTA 58.628 43.478 0.00 0.00 39.60 1.90
4432 5270 7.906010 CGAGTTGACTTGTGTTTGTGTTTATAA 59.094 33.333 0.00 0.00 0.00 0.98
4436 5274 4.472286 CGAGTTGACTTGTGTTTGTGTTT 58.528 39.130 0.00 0.00 0.00 2.83
4458 5296 1.304464 CCCCTTCTTGTTGGAGCCC 60.304 63.158 0.00 0.00 0.00 5.19
4499 5337 9.109393 GCTATTCATCAGTTCTTGGTTGTTATA 57.891 33.333 0.00 0.00 0.00 0.98
4501 5339 6.939730 TGCTATTCATCAGTTCTTGGTTGTTA 59.060 34.615 0.00 0.00 0.00 2.41
4584 5422 6.020440 CCATGTTATTTGCTGCTATTTCAACG 60.020 38.462 0.00 0.00 0.00 4.10
4596 5434 5.226194 TGCCTTTTTCCATGTTATTTGCT 57.774 34.783 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.