Multiple sequence alignment - TraesCS1D01G198300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G198300 chr1D 100.000 6056 0 0 1 6056 279941398 279935343 0.000000e+00 11184.0
1 TraesCS1D01G198300 chr1D 91.954 348 28 0 3388 3735 279937840 279937493 7.050000e-134 488.0
2 TraesCS1D01G198300 chr1D 91.954 348 28 0 3559 3906 279938011 279937664 7.050000e-134 488.0
3 TraesCS1D01G198300 chr1D 90.960 177 16 0 3388 3564 279937669 279937493 7.840000e-59 239.0
4 TraesCS1D01G198300 chr1D 90.960 177 16 0 3730 3906 279938011 279937835 7.840000e-59 239.0
5 TraesCS1D01G198300 chr1D 77.576 165 27 8 5 163 202300431 202300591 2.320000e-14 91.6
6 TraesCS1D01G198300 chr1A 95.027 5409 214 24 690 6056 351864037 351858642 0.000000e+00 8447.0
7 TraesCS1D01G198300 chr1A 93.391 348 23 0 3388 3735 351861160 351860813 3.240000e-142 516.0
8 TraesCS1D01G198300 chr1A 92.241 348 27 0 3559 3906 351861331 351860984 1.520000e-135 494.0
9 TraesCS1D01G198300 chr1A 92.655 177 13 0 3388 3564 351860989 351860813 7.790000e-64 255.0
10 TraesCS1D01G198300 chr1A 90.960 177 16 0 3730 3906 351861331 351861155 7.840000e-59 239.0
11 TraesCS1D01G198300 chr1A 88.144 194 14 7 4 194 249145678 249145491 7.900000e-54 222.0
12 TraesCS1D01G198300 chr1A 91.270 126 8 3 401 523 351864344 351864219 1.040000e-37 169.0
13 TraesCS1D01G198300 chr1A 91.358 81 6 1 530 610 351864153 351864074 6.420000e-20 110.0
14 TraesCS1D01G198300 chr1B 95.919 4803 136 28 538 5290 380440482 380435690 0.000000e+00 7729.0
15 TraesCS1D01G198300 chr1B 94.063 758 19 5 5323 6056 380435690 380434935 0.000000e+00 1127.0
16 TraesCS1D01G198300 chr1B 91.379 348 30 0 3559 3906 380437594 380437247 1.530000e-130 477.0
17 TraesCS1D01G198300 chr1B 91.092 348 31 0 3388 3735 380437423 380437076 7.100000e-129 472.0
18 TraesCS1D01G198300 chr1B 90.395 177 17 0 3730 3906 380437594 380437418 3.650000e-57 233.0
19 TraesCS1D01G198300 chr1B 89.831 177 18 0 3388 3564 380437252 380437076 1.700000e-55 228.0
20 TraesCS1D01G198300 chr1B 91.270 126 8 3 401 523 380440687 380440562 1.040000e-37 169.0
21 TraesCS1D01G198300 chr5A 84.431 334 32 6 1320 1652 465120584 465120270 1.640000e-80 311.0
22 TraesCS1D01G198300 chr5A 76.923 260 23 21 1014 1261 465120824 465120590 4.960000e-21 113.0
23 TraesCS1D01G198300 chr7D 88.764 178 19 1 10 187 228536685 228536509 3.680000e-52 217.0
24 TraesCS1D01G198300 chr7D 86.667 75 7 3 120 193 478065607 478065535 5.030000e-11 80.5
25 TraesCS1D01G198300 chr7A 86.022 93 10 3 2 93 517647416 517647506 5.000000e-16 97.1
26 TraesCS1D01G198300 chr7A 90.141 71 6 1 125 194 240752359 240752289 2.320000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G198300 chr1D 279935343 279941398 6055 True 2527.600000 11184 93.165600 1 6056 5 chr1D.!!$R1 6055
1 TraesCS1D01G198300 chr1A 351858642 351864344 5702 True 1461.428571 8447 92.414571 401 6056 7 chr1A.!!$R2 5655
2 TraesCS1D01G198300 chr1B 380434935 380440687 5752 True 1490.714286 7729 91.992714 401 6056 7 chr1B.!!$R1 5655
3 TraesCS1D01G198300 chr5A 465120270 465120824 554 True 212.000000 311 80.677000 1014 1652 2 chr5A.!!$R1 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
523 524 0.099968 CAAGCAATCCCACATCAGCG 59.900 55.000 0.00 0.00 0.00 5.18 F
999 1114 0.107459 CTTCAACAGGGGGCTAGCTC 60.107 60.000 15.72 11.22 0.00 4.09 F
1780 1923 1.228245 GTGTTTCCAGAGGCAGCCA 60.228 57.895 15.80 0.00 0.00 4.75 F
2620 2763 1.004080 GCTGACAGAGAAGGCTGCA 60.004 57.895 6.65 0.00 39.51 4.41 F
3229 3372 1.072505 GAAGGAGGTCGGGTTTGCA 59.927 57.895 0.00 0.00 0.00 4.08 F
3455 3598 1.577736 CTCCCACCTCAAGGATCTGT 58.422 55.000 2.30 0.00 38.94 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1989 2132 0.109226 GACGGACTTGAACCTCTCGG 60.109 60.000 0.00 0.0 0.00 4.63 R
2376 2519 1.220477 GCTCTGACCAGCTTCTCCC 59.780 63.158 0.00 0.0 36.38 4.30 R
3164 3307 1.202940 GGCTTCTGAACCCAACCTCTT 60.203 52.381 0.00 0.0 0.00 2.85 R
4600 4743 1.077625 AGCTCCGTCTTCTCCCTGT 59.922 57.895 0.00 0.0 0.00 4.00 R
4627 4770 1.105759 GCATCAGAAGGCCACCCATC 61.106 60.000 5.01 0.0 0.00 3.51 R
5275 5426 0.031716 AGATACTGAGCCTCCCAGCA 60.032 55.000 0.00 0.0 35.14 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.640597 ATCAAGCTCATCTCAAATGAATTCA 57.359 32.000 11.26 11.26 0.00 2.57
32 33 7.457024 TCAAGCTCATCTCAAATGAATTCAA 57.543 32.000 13.09 0.00 0.00 2.69
33 34 7.888424 TCAAGCTCATCTCAAATGAATTCAAA 58.112 30.769 13.09 0.00 0.00 2.69
34 35 8.361889 TCAAGCTCATCTCAAATGAATTCAAAA 58.638 29.630 13.09 0.00 0.00 2.44
35 36 8.433126 CAAGCTCATCTCAAATGAATTCAAAAC 58.567 33.333 13.09 0.00 0.00 2.43
36 37 7.663827 AGCTCATCTCAAATGAATTCAAAACA 58.336 30.769 13.09 0.00 0.00 2.83
37 38 8.145767 AGCTCATCTCAAATGAATTCAAAACAA 58.854 29.630 13.09 0.00 0.00 2.83
38 39 8.767085 GCTCATCTCAAATGAATTCAAAACAAA 58.233 29.630 13.09 0.00 0.00 2.83
84 85 8.800370 TTTATTACATAGTTCATCAAGCCACA 57.200 30.769 0.00 0.00 0.00 4.17
85 86 8.800370 TTATTACATAGTTCATCAAGCCACAA 57.200 30.769 0.00 0.00 0.00 3.33
86 87 6.494893 TTACATAGTTCATCAAGCCACAAC 57.505 37.500 0.00 0.00 0.00 3.32
87 88 4.397420 ACATAGTTCATCAAGCCACAACA 58.603 39.130 0.00 0.00 0.00 3.33
88 89 5.012239 ACATAGTTCATCAAGCCACAACAT 58.988 37.500 0.00 0.00 0.00 2.71
89 90 5.124457 ACATAGTTCATCAAGCCACAACATC 59.876 40.000 0.00 0.00 0.00 3.06
90 91 3.489355 AGTTCATCAAGCCACAACATCA 58.511 40.909 0.00 0.00 0.00 3.07
91 92 3.890756 AGTTCATCAAGCCACAACATCAA 59.109 39.130 0.00 0.00 0.00 2.57
92 93 4.341806 AGTTCATCAAGCCACAACATCAAA 59.658 37.500 0.00 0.00 0.00 2.69
93 94 4.933505 TCATCAAGCCACAACATCAAAA 57.066 36.364 0.00 0.00 0.00 2.44
94 95 5.471556 TCATCAAGCCACAACATCAAAAT 57.528 34.783 0.00 0.00 0.00 1.82
95 96 5.856156 TCATCAAGCCACAACATCAAAATT 58.144 33.333 0.00 0.00 0.00 1.82
96 97 6.990798 TCATCAAGCCACAACATCAAAATTA 58.009 32.000 0.00 0.00 0.00 1.40
97 98 7.440198 TCATCAAGCCACAACATCAAAATTAA 58.560 30.769 0.00 0.00 0.00 1.40
98 99 7.384660 TCATCAAGCCACAACATCAAAATTAAC 59.615 33.333 0.00 0.00 0.00 2.01
99 100 6.577103 TCAAGCCACAACATCAAAATTAACA 58.423 32.000 0.00 0.00 0.00 2.41
100 101 6.478344 TCAAGCCACAACATCAAAATTAACAC 59.522 34.615 0.00 0.00 0.00 3.32
101 102 5.911752 AGCCACAACATCAAAATTAACACA 58.088 33.333 0.00 0.00 0.00 3.72
102 103 6.344500 AGCCACAACATCAAAATTAACACAA 58.656 32.000 0.00 0.00 0.00 3.33
103 104 6.820656 AGCCACAACATCAAAATTAACACAAA 59.179 30.769 0.00 0.00 0.00 2.83
104 105 7.498570 AGCCACAACATCAAAATTAACACAAAT 59.501 29.630 0.00 0.00 0.00 2.32
105 106 8.127954 GCCACAACATCAAAATTAACACAAATT 58.872 29.630 0.00 0.00 0.00 1.82
106 107 9.435802 CCACAACATCAAAATTAACACAAATTG 57.564 29.630 0.00 0.00 0.00 2.32
107 108 9.985318 CACAACATCAAAATTAACACAAATTGT 57.015 25.926 0.00 0.00 41.74 2.71
122 123 8.939201 ACACAAATTGTTCATCAAACATAACA 57.061 26.923 0.00 0.00 46.94 2.41
123 124 8.816144 ACACAAATTGTTCATCAAACATAACAC 58.184 29.630 0.00 0.00 46.94 3.32
124 125 8.274939 CACAAATTGTTCATCAAACATAACACC 58.725 33.333 0.00 0.00 46.94 4.16
125 126 7.984050 ACAAATTGTTCATCAAACATAACACCA 59.016 29.630 0.00 0.00 46.94 4.17
126 127 8.824781 CAAATTGTTCATCAAACATAACACCAA 58.175 29.630 0.00 0.00 46.94 3.67
127 128 8.954950 AATTGTTCATCAAACATAACACCAAA 57.045 26.923 0.00 0.00 46.94 3.28
128 129 9.558396 AATTGTTCATCAAACATAACACCAAAT 57.442 25.926 0.00 0.00 46.94 2.32
129 130 8.954950 TTGTTCATCAAACATAACACCAAATT 57.045 26.923 0.00 0.00 46.94 1.82
130 131 8.362860 TGTTCATCAAACATAACACCAAATTG 57.637 30.769 0.00 0.00 42.95 2.32
131 132 7.984050 TGTTCATCAAACATAACACCAAATTGT 59.016 29.630 0.00 0.00 42.95 2.71
132 133 8.825745 GTTCATCAAACATAACACCAAATTGTT 58.174 29.630 0.00 0.00 39.18 2.83
133 134 8.586570 TCATCAAACATAACACCAAATTGTTC 57.413 30.769 0.00 0.00 40.29 3.18
134 135 8.200120 TCATCAAACATAACACCAAATTGTTCA 58.800 29.630 0.00 0.00 40.29 3.18
135 136 8.991026 CATCAAACATAACACCAAATTGTTCAT 58.009 29.630 0.00 0.00 40.29 2.57
136 137 8.586570 TCAAACATAACACCAAATTGTTCATC 57.413 30.769 0.00 0.00 40.29 2.92
137 138 8.200120 TCAAACATAACACCAAATTGTTCATCA 58.800 29.630 0.00 0.00 40.29 3.07
138 139 8.991026 CAAACATAACACCAAATTGTTCATCAT 58.009 29.630 0.00 0.00 40.29 2.45
139 140 8.761575 AACATAACACCAAATTGTTCATCATC 57.238 30.769 0.00 0.00 40.29 2.92
140 141 7.894708 ACATAACACCAAATTGTTCATCATCA 58.105 30.769 0.00 0.00 40.29 3.07
141 142 7.814107 ACATAACACCAAATTGTTCATCATCAC 59.186 33.333 0.00 0.00 40.29 3.06
142 143 5.787953 ACACCAAATTGTTCATCATCACA 57.212 34.783 0.00 0.00 0.00 3.58
143 144 5.531634 ACACCAAATTGTTCATCATCACAC 58.468 37.500 0.00 0.00 0.00 3.82
144 145 5.068855 ACACCAAATTGTTCATCATCACACA 59.931 36.000 0.00 0.00 0.00 3.72
145 146 6.160684 CACCAAATTGTTCATCATCACACAT 58.839 36.000 0.00 0.00 0.00 3.21
146 147 7.039853 ACACCAAATTGTTCATCATCACACATA 60.040 33.333 0.00 0.00 0.00 2.29
147 148 7.274033 CACCAAATTGTTCATCATCACACATAC 59.726 37.037 0.00 0.00 0.00 2.39
148 149 7.039853 ACCAAATTGTTCATCATCACACATACA 60.040 33.333 0.00 0.00 0.00 2.29
149 150 7.977293 CCAAATTGTTCATCATCACACATACAT 59.023 33.333 0.00 0.00 0.00 2.29
150 151 8.803799 CAAATTGTTCATCATCACACATACATG 58.196 33.333 0.00 0.00 0.00 3.21
151 152 7.868906 ATTGTTCATCATCACACATACATGA 57.131 32.000 0.00 0.00 0.00 3.07
152 153 7.684937 TTGTTCATCATCACACATACATGAA 57.315 32.000 0.00 0.00 30.43 2.57
153 154 7.684937 TGTTCATCATCACACATACATGAAA 57.315 32.000 0.00 0.00 33.28 2.69
154 155 7.529158 TGTTCATCATCACACATACATGAAAC 58.471 34.615 0.00 0.00 33.28 2.78
155 156 7.174599 TGTTCATCATCACACATACATGAAACA 59.825 33.333 0.00 0.00 33.28 2.83
156 157 7.868906 TCATCATCACACATACATGAAACAT 57.131 32.000 0.00 0.00 30.43 2.71
157 158 8.961294 TCATCATCACACATACATGAAACATA 57.039 30.769 0.00 0.00 30.43 2.29
158 159 9.048446 TCATCATCACACATACATGAAACATAG 57.952 33.333 0.00 0.00 30.43 2.23
159 160 9.048446 CATCATCACACATACATGAAACATAGA 57.952 33.333 0.00 0.00 30.43 1.98
160 161 8.652810 TCATCACACATACATGAAACATAGAG 57.347 34.615 0.00 0.00 0.00 2.43
161 162 8.477256 TCATCACACATACATGAAACATAGAGA 58.523 33.333 0.00 0.00 0.00 3.10
162 163 9.269453 CATCACACATACATGAAACATAGAGAT 57.731 33.333 0.00 0.00 0.00 2.75
163 164 8.652810 TCACACATACATGAAACATAGAGATG 57.347 34.615 0.00 0.00 39.16 2.90
164 165 8.477256 TCACACATACATGAAACATAGAGATGA 58.523 33.333 0.00 0.00 36.48 2.92
165 166 9.101655 CACACATACATGAAACATAGAGATGAA 57.898 33.333 0.00 0.00 36.48 2.57
166 167 9.671279 ACACATACATGAAACATAGAGATGAAA 57.329 29.630 0.00 0.00 36.48 2.69
167 168 9.926751 CACATACATGAAACATAGAGATGAAAC 57.073 33.333 0.00 0.00 36.48 2.78
168 169 9.113838 ACATACATGAAACATAGAGATGAAACC 57.886 33.333 0.00 0.00 36.48 3.27
169 170 9.112725 CATACATGAAACATAGAGATGAAACCA 57.887 33.333 0.00 0.00 36.48 3.67
170 171 7.621428 ACATGAAACATAGAGATGAAACCAG 57.379 36.000 0.00 0.00 36.48 4.00
171 172 7.170965 ACATGAAACATAGAGATGAAACCAGT 58.829 34.615 0.00 0.00 36.48 4.00
172 173 7.120285 ACATGAAACATAGAGATGAAACCAGTG 59.880 37.037 0.00 0.00 36.48 3.66
173 174 5.939883 TGAAACATAGAGATGAAACCAGTGG 59.060 40.000 7.91 7.91 36.48 4.00
174 175 4.494091 ACATAGAGATGAAACCAGTGGG 57.506 45.455 15.21 0.00 36.48 4.61
175 176 3.209410 CATAGAGATGAAACCAGTGGGC 58.791 50.000 15.21 2.93 34.28 5.36
176 177 1.366319 AGAGATGAAACCAGTGGGCT 58.634 50.000 15.21 0.00 37.90 5.19
177 178 1.707427 AGAGATGAAACCAGTGGGCTT 59.293 47.619 15.21 6.28 37.90 4.35
178 179 1.815003 GAGATGAAACCAGTGGGCTTG 59.185 52.381 15.21 0.00 37.90 4.01
179 180 1.145738 AGATGAAACCAGTGGGCTTGT 59.854 47.619 15.21 0.00 37.90 3.16
180 181 1.963515 GATGAAACCAGTGGGCTTGTT 59.036 47.619 15.21 0.00 37.90 2.83
181 182 2.738587 TGAAACCAGTGGGCTTGTTA 57.261 45.000 15.21 0.00 37.90 2.41
182 183 2.303175 TGAAACCAGTGGGCTTGTTAC 58.697 47.619 15.21 0.00 37.90 2.50
183 184 2.303175 GAAACCAGTGGGCTTGTTACA 58.697 47.619 15.21 0.00 37.90 2.41
184 185 1.687563 AACCAGTGGGCTTGTTACAC 58.312 50.000 15.21 0.00 37.90 2.90
185 186 0.548989 ACCAGTGGGCTTGTTACACA 59.451 50.000 15.21 0.00 37.58 3.72
186 187 1.144913 ACCAGTGGGCTTGTTACACAT 59.855 47.619 15.21 0.00 37.58 3.21
187 188 2.373836 ACCAGTGGGCTTGTTACACATA 59.626 45.455 15.21 0.00 37.58 2.29
188 189 2.747446 CCAGTGGGCTTGTTACACATAC 59.253 50.000 0.00 0.00 37.58 2.39
189 190 3.407698 CAGTGGGCTTGTTACACATACA 58.592 45.455 0.00 0.00 37.58 2.29
190 191 4.009675 CAGTGGGCTTGTTACACATACAT 58.990 43.478 0.00 0.00 37.58 2.29
191 192 4.009675 AGTGGGCTTGTTACACATACATG 58.990 43.478 0.00 0.00 37.58 3.21
192 193 2.752354 TGGGCTTGTTACACATACATGC 59.248 45.455 0.00 0.00 42.59 4.06
195 196 4.701956 GCTTGTTACACATACATGCCTT 57.298 40.909 0.00 0.00 39.44 4.35
196 197 4.414852 GCTTGTTACACATACATGCCTTG 58.585 43.478 0.00 0.00 39.44 3.61
197 198 4.082787 GCTTGTTACACATACATGCCTTGT 60.083 41.667 0.00 0.00 39.44 3.16
198 199 5.621197 TTGTTACACATACATGCCTTGTC 57.379 39.130 0.00 0.00 39.87 3.18
199 200 4.646572 TGTTACACATACATGCCTTGTCA 58.353 39.130 0.00 0.00 39.87 3.58
200 201 4.454161 TGTTACACATACATGCCTTGTCAC 59.546 41.667 0.00 0.00 39.87 3.67
201 202 3.138884 ACACATACATGCCTTGTCACA 57.861 42.857 0.00 0.00 39.87 3.58
202 203 2.813754 ACACATACATGCCTTGTCACAC 59.186 45.455 0.00 0.00 39.87 3.82
203 204 2.813172 CACATACATGCCTTGTCACACA 59.187 45.455 0.00 0.00 39.87 3.72
204 205 3.441222 CACATACATGCCTTGTCACACAT 59.559 43.478 0.00 0.00 39.87 3.21
205 206 4.635324 CACATACATGCCTTGTCACACATA 59.365 41.667 0.00 0.00 39.87 2.29
206 207 5.123661 CACATACATGCCTTGTCACACATAA 59.876 40.000 0.00 0.00 39.87 1.90
207 208 5.123820 ACATACATGCCTTGTCACACATAAC 59.876 40.000 0.00 0.00 39.87 1.89
208 209 3.485394 ACATGCCTTGTCACACATAACA 58.515 40.909 0.00 0.00 30.89 2.41
209 210 3.253188 ACATGCCTTGTCACACATAACAC 59.747 43.478 0.00 0.00 30.89 3.32
210 211 2.924421 TGCCTTGTCACACATAACACA 58.076 42.857 0.00 0.00 0.00 3.72
211 212 3.282885 TGCCTTGTCACACATAACACAA 58.717 40.909 0.00 0.00 0.00 3.33
212 213 3.696548 TGCCTTGTCACACATAACACAAA 59.303 39.130 0.00 0.00 0.00 2.83
213 214 4.340666 TGCCTTGTCACACATAACACAAAT 59.659 37.500 0.00 0.00 0.00 2.32
214 215 5.163468 TGCCTTGTCACACATAACACAAATT 60.163 36.000 0.00 0.00 0.00 1.82
215 216 5.752955 GCCTTGTCACACATAACACAAATTT 59.247 36.000 0.00 0.00 0.00 1.82
216 217 6.257630 GCCTTGTCACACATAACACAAATTTT 59.742 34.615 0.00 0.00 0.00 1.82
217 218 7.436673 GCCTTGTCACACATAACACAAATTTTA 59.563 33.333 0.00 0.00 0.00 1.52
218 219 8.751335 CCTTGTCACACATAACACAAATTTTAC 58.249 33.333 0.00 0.00 0.00 2.01
219 220 7.900299 TGTCACACATAACACAAATTTTACG 57.100 32.000 0.00 0.00 0.00 3.18
220 221 6.415280 TGTCACACATAACACAAATTTTACGC 59.585 34.615 0.00 0.00 0.00 4.42
221 222 6.635239 GTCACACATAACACAAATTTTACGCT 59.365 34.615 0.00 0.00 0.00 5.07
222 223 6.634837 TCACACATAACACAAATTTTACGCTG 59.365 34.615 0.00 0.00 0.00 5.18
223 224 5.401079 ACACATAACACAAATTTTACGCTGC 59.599 36.000 0.00 0.00 0.00 5.25
224 225 5.629020 CACATAACACAAATTTTACGCTGCT 59.371 36.000 0.00 0.00 0.00 4.24
225 226 5.629020 ACATAACACAAATTTTACGCTGCTG 59.371 36.000 0.00 0.00 0.00 4.41
226 227 2.393764 ACACAAATTTTACGCTGCTGC 58.606 42.857 5.34 5.34 0.00 5.25
227 228 2.034558 ACACAAATTTTACGCTGCTGCT 59.965 40.909 14.03 3.65 36.97 4.24
228 229 2.406024 CACAAATTTTACGCTGCTGCTG 59.594 45.455 14.03 9.56 36.97 4.41
229 230 1.387756 CAAATTTTACGCTGCTGCTGC 59.612 47.619 19.94 19.94 36.97 5.25
248 249 1.515081 CAAATTTGCAGCACTTGGGG 58.485 50.000 5.01 0.00 0.00 4.96
249 250 0.250424 AAATTTGCAGCACTTGGGGC 60.250 50.000 0.00 0.00 0.00 5.80
250 251 1.409251 AATTTGCAGCACTTGGGGCA 61.409 50.000 0.00 0.00 0.00 5.36
251 252 1.409251 ATTTGCAGCACTTGGGGCAA 61.409 50.000 0.00 0.00 43.79 4.52
252 253 2.062777 TTGCAGCACTTGGGGCAAA 61.063 52.632 0.00 0.00 42.66 3.68
253 254 1.620739 TTGCAGCACTTGGGGCAAAA 61.621 50.000 0.00 0.00 42.66 2.44
254 255 1.372307 GCAGCACTTGGGGCAAAAT 59.628 52.632 0.00 0.00 0.00 1.82
255 256 0.250424 GCAGCACTTGGGGCAAAATT 60.250 50.000 0.00 0.00 0.00 1.82
256 257 1.815021 GCAGCACTTGGGGCAAAATTT 60.815 47.619 0.00 0.00 0.00 1.82
257 258 2.574450 CAGCACTTGGGGCAAAATTTT 58.426 42.857 0.00 0.00 0.00 1.82
258 259 2.291190 CAGCACTTGGGGCAAAATTTTG 59.709 45.455 23.74 23.74 41.03 2.44
259 260 1.608109 GCACTTGGGGCAAAATTTTGG 59.392 47.619 27.60 14.80 38.57 3.28
260 261 2.228925 CACTTGGGGCAAAATTTTGGG 58.771 47.619 27.60 8.26 38.57 4.12
261 262 1.144708 ACTTGGGGCAAAATTTTGGGG 59.855 47.619 27.60 7.59 38.57 4.96
262 263 0.178978 TTGGGGCAAAATTTTGGGGC 60.179 50.000 27.60 17.05 38.57 5.80
263 264 1.064824 TGGGGCAAAATTTTGGGGCT 61.065 50.000 27.60 0.00 38.57 5.19
264 265 0.608856 GGGGCAAAATTTTGGGGCTG 60.609 55.000 27.60 6.95 38.57 4.85
265 266 1.243342 GGGCAAAATTTTGGGGCTGC 61.243 55.000 27.60 15.59 38.57 5.25
266 267 1.243342 GGCAAAATTTTGGGGCTGCC 61.243 55.000 27.60 20.06 42.28 4.85
267 268 1.243342 GCAAAATTTTGGGGCTGCCC 61.243 55.000 29.93 29.93 44.51 5.36
278 279 0.597568 GGGCTGCCCAAAATTTTTGC 59.402 50.000 32.46 12.98 44.65 3.68
279 280 1.316651 GGCTGCCCAAAATTTTTGCA 58.683 45.000 18.77 18.77 0.00 4.08
281 282 2.691984 CTGCCCAAAATTTTTGCAGC 57.308 45.000 26.74 19.90 42.40 5.25
282 283 1.948145 CTGCCCAAAATTTTTGCAGCA 59.052 42.857 26.74 24.29 42.40 4.41
283 284 2.554893 CTGCCCAAAATTTTTGCAGCAT 59.445 40.909 26.74 0.00 42.40 3.79
284 285 2.293677 TGCCCAAAATTTTTGCAGCATG 59.706 40.909 23.09 9.04 40.87 4.06
285 286 2.553172 GCCCAAAATTTTTGCAGCATGA 59.447 40.909 20.98 0.00 39.69 3.07
286 287 3.365565 GCCCAAAATTTTTGCAGCATGAG 60.366 43.478 20.98 6.79 39.69 2.90
287 288 4.066490 CCCAAAATTTTTGCAGCATGAGA 58.934 39.130 15.02 0.00 39.69 3.27
288 289 4.698304 CCCAAAATTTTTGCAGCATGAGAT 59.302 37.500 15.02 0.00 39.69 2.75
289 290 5.875910 CCCAAAATTTTTGCAGCATGAGATA 59.124 36.000 15.02 0.00 39.69 1.98
290 291 6.036735 CCCAAAATTTTTGCAGCATGAGATAG 59.963 38.462 15.02 0.00 39.69 2.08
291 292 6.814644 CCAAAATTTTTGCAGCATGAGATAGA 59.185 34.615 15.02 0.00 39.69 1.98
292 293 7.010183 CCAAAATTTTTGCAGCATGAGATAGAG 59.990 37.037 15.02 0.00 39.69 2.43
293 294 7.400599 AAATTTTTGCAGCATGAGATAGAGA 57.599 32.000 0.00 0.00 39.69 3.10
294 295 7.584122 AATTTTTGCAGCATGAGATAGAGAT 57.416 32.000 0.00 0.00 39.69 2.75
295 296 8.687292 AATTTTTGCAGCATGAGATAGAGATA 57.313 30.769 0.00 0.00 39.69 1.98
296 297 7.725818 TTTTTGCAGCATGAGATAGAGATAG 57.274 36.000 0.00 0.00 39.69 2.08
297 298 5.402997 TTGCAGCATGAGATAGAGATAGG 57.597 43.478 0.00 0.00 39.69 2.57
298 299 3.768215 TGCAGCATGAGATAGAGATAGGG 59.232 47.826 0.00 0.00 39.69 3.53
299 300 3.430651 GCAGCATGAGATAGAGATAGGGC 60.431 52.174 0.00 0.00 39.69 5.19
300 301 3.768215 CAGCATGAGATAGAGATAGGGCA 59.232 47.826 0.00 0.00 39.69 5.36
301 302 4.025360 AGCATGAGATAGAGATAGGGCAG 58.975 47.826 0.00 0.00 0.00 4.85
302 303 3.768757 GCATGAGATAGAGATAGGGCAGT 59.231 47.826 0.00 0.00 0.00 4.40
303 304 4.222588 GCATGAGATAGAGATAGGGCAGTT 59.777 45.833 0.00 0.00 0.00 3.16
304 305 5.722263 CATGAGATAGAGATAGGGCAGTTG 58.278 45.833 0.00 0.00 0.00 3.16
305 306 4.809193 TGAGATAGAGATAGGGCAGTTGT 58.191 43.478 0.00 0.00 0.00 3.32
306 307 5.211973 TGAGATAGAGATAGGGCAGTTGTT 58.788 41.667 0.00 0.00 0.00 2.83
307 308 5.069648 TGAGATAGAGATAGGGCAGTTGTTG 59.930 44.000 0.00 0.00 0.00 3.33
308 309 5.211973 AGATAGAGATAGGGCAGTTGTTGA 58.788 41.667 0.00 0.00 0.00 3.18
309 310 5.663106 AGATAGAGATAGGGCAGTTGTTGAA 59.337 40.000 0.00 0.00 0.00 2.69
310 311 4.213564 AGAGATAGGGCAGTTGTTGAAG 57.786 45.455 0.00 0.00 0.00 3.02
311 312 2.680339 GAGATAGGGCAGTTGTTGAAGC 59.320 50.000 0.00 0.00 0.00 3.86
312 313 2.040278 AGATAGGGCAGTTGTTGAAGCA 59.960 45.455 0.00 0.00 0.00 3.91
313 314 1.604604 TAGGGCAGTTGTTGAAGCAC 58.395 50.000 0.00 0.00 0.00 4.40
314 315 1.109323 AGGGCAGTTGTTGAAGCACC 61.109 55.000 0.00 0.00 0.00 5.01
315 316 1.008538 GGCAGTTGTTGAAGCACCG 60.009 57.895 0.00 0.00 0.00 4.94
316 317 1.724582 GGCAGTTGTTGAAGCACCGT 61.725 55.000 0.00 0.00 0.00 4.83
317 318 0.100503 GCAGTTGTTGAAGCACCGTT 59.899 50.000 0.00 0.00 0.00 4.44
318 319 1.469079 GCAGTTGTTGAAGCACCGTTT 60.469 47.619 0.00 0.00 0.00 3.60
319 320 2.874849 CAGTTGTTGAAGCACCGTTTT 58.125 42.857 0.00 0.00 0.00 2.43
320 321 3.249917 CAGTTGTTGAAGCACCGTTTTT 58.750 40.909 0.00 0.00 0.00 1.94
321 322 4.416620 CAGTTGTTGAAGCACCGTTTTTA 58.583 39.130 0.00 0.00 0.00 1.52
322 323 4.499040 CAGTTGTTGAAGCACCGTTTTTAG 59.501 41.667 0.00 0.00 0.00 1.85
323 324 3.701532 TGTTGAAGCACCGTTTTTAGG 57.298 42.857 0.00 0.00 0.00 2.69
324 325 3.018149 TGTTGAAGCACCGTTTTTAGGT 58.982 40.909 0.00 0.00 43.97 3.08
325 326 3.444388 TGTTGAAGCACCGTTTTTAGGTT 59.556 39.130 0.00 0.00 40.59 3.50
326 327 3.974871 TGAAGCACCGTTTTTAGGTTC 57.025 42.857 0.00 0.00 40.59 3.62
327 328 3.280295 TGAAGCACCGTTTTTAGGTTCA 58.720 40.909 0.00 0.00 43.59 3.18
328 329 3.695060 TGAAGCACCGTTTTTAGGTTCAA 59.305 39.130 0.00 0.00 43.07 2.69
329 330 4.158025 TGAAGCACCGTTTTTAGGTTCAAA 59.842 37.500 0.00 0.00 43.07 2.69
330 331 4.929819 AGCACCGTTTTTAGGTTCAAAT 57.070 36.364 0.00 0.00 40.59 2.32
331 332 4.616953 AGCACCGTTTTTAGGTTCAAATG 58.383 39.130 0.00 0.00 40.59 2.32
332 333 3.183574 GCACCGTTTTTAGGTTCAAATGC 59.816 43.478 0.00 0.00 40.59 3.56
333 334 3.738791 CACCGTTTTTAGGTTCAAATGCC 59.261 43.478 0.00 0.00 40.59 4.40
334 335 3.243941 ACCGTTTTTAGGTTCAAATGCCC 60.244 43.478 0.00 0.00 39.29 5.36
335 336 3.006430 CCGTTTTTAGGTTCAAATGCCCT 59.994 43.478 0.00 0.00 0.00 5.19
336 337 4.218852 CCGTTTTTAGGTTCAAATGCCCTA 59.781 41.667 0.00 0.00 0.00 3.53
337 338 5.279056 CCGTTTTTAGGTTCAAATGCCCTAA 60.279 40.000 7.10 7.10 38.69 2.69
338 339 5.631929 CGTTTTTAGGTTCAAATGCCCTAAC 59.368 40.000 9.54 3.58 39.82 2.34
339 340 6.517605 GTTTTTAGGTTCAAATGCCCTAACA 58.482 36.000 9.54 3.58 39.82 2.41
340 341 6.926630 TTTTAGGTTCAAATGCCCTAACAT 57.073 33.333 9.54 0.00 39.82 2.71
341 342 8.308207 GTTTTTAGGTTCAAATGCCCTAACATA 58.692 33.333 9.54 0.00 39.82 2.29
342 343 7.639113 TTTAGGTTCAAATGCCCTAACATAG 57.361 36.000 9.54 0.00 39.82 2.23
343 344 5.193099 AGGTTCAAATGCCCTAACATAGT 57.807 39.130 0.00 0.00 0.00 2.12
344 345 6.321821 AGGTTCAAATGCCCTAACATAGTA 57.678 37.500 0.00 0.00 0.00 1.82
345 346 6.911308 AGGTTCAAATGCCCTAACATAGTAT 58.089 36.000 0.00 0.00 0.00 2.12
346 347 7.354312 AGGTTCAAATGCCCTAACATAGTATT 58.646 34.615 0.00 0.00 0.00 1.89
347 348 7.839200 AGGTTCAAATGCCCTAACATAGTATTT 59.161 33.333 0.00 0.00 0.00 1.40
348 349 8.474831 GGTTCAAATGCCCTAACATAGTATTTT 58.525 33.333 0.00 0.00 0.00 1.82
349 350 9.301153 GTTCAAATGCCCTAACATAGTATTTTG 57.699 33.333 0.00 0.00 0.00 2.44
350 351 8.815565 TCAAATGCCCTAACATAGTATTTTGA 57.184 30.769 0.00 0.00 0.00 2.69
351 352 9.249053 TCAAATGCCCTAACATAGTATTTTGAA 57.751 29.630 0.00 0.00 0.00 2.69
352 353 9.301153 CAAATGCCCTAACATAGTATTTTGAAC 57.699 33.333 0.00 0.00 0.00 3.18
353 354 8.588290 AATGCCCTAACATAGTATTTTGAACA 57.412 30.769 0.00 0.00 0.00 3.18
354 355 8.766994 ATGCCCTAACATAGTATTTTGAACAT 57.233 30.769 0.00 0.00 0.00 2.71
355 356 8.220755 TGCCCTAACATAGTATTTTGAACATC 57.779 34.615 0.00 0.00 0.00 3.06
356 357 8.052748 TGCCCTAACATAGTATTTTGAACATCT 58.947 33.333 0.00 0.00 0.00 2.90
357 358 8.345565 GCCCTAACATAGTATTTTGAACATCTG 58.654 37.037 0.00 0.00 0.00 2.90
358 359 9.396022 CCCTAACATAGTATTTTGAACATCTGT 57.604 33.333 0.00 0.00 0.00 3.41
380 381 9.613428 TCTGTCCTATTTTTACATATGTTGGAG 57.387 33.333 14.77 3.69 0.00 3.86
381 382 9.396022 CTGTCCTATTTTTACATATGTTGGAGT 57.604 33.333 14.77 1.13 0.00 3.85
382 383 9.173021 TGTCCTATTTTTACATATGTTGGAGTG 57.827 33.333 14.77 0.13 0.00 3.51
383 384 8.129211 GTCCTATTTTTACATATGTTGGAGTGC 58.871 37.037 14.77 0.00 0.00 4.40
384 385 8.052748 TCCTATTTTTACATATGTTGGAGTGCT 58.947 33.333 14.77 0.00 0.00 4.40
385 386 8.345565 CCTATTTTTACATATGTTGGAGTGCTC 58.654 37.037 14.77 0.00 0.00 4.26
396 397 1.703411 GGAGTGCTCCTAGAGATGCT 58.297 55.000 10.80 0.00 46.16 3.79
397 398 2.038659 GGAGTGCTCCTAGAGATGCTT 58.961 52.381 10.80 0.00 46.16 3.91
398 399 2.035832 GGAGTGCTCCTAGAGATGCTTC 59.964 54.545 10.80 0.00 46.16 3.86
399 400 2.958355 GAGTGCTCCTAGAGATGCTTCT 59.042 50.000 0.96 0.96 33.88 2.85
429 430 4.698583 TCGAGTCAGTTAAGTTAGAGCC 57.301 45.455 0.00 0.00 0.00 4.70
449 450 0.673644 AAGTATGGGTGTGCGTCAGC 60.674 55.000 2.91 2.91 45.41 4.26
521 522 1.475280 CACCAAGCAATCCCACATCAG 59.525 52.381 0.00 0.00 0.00 2.90
523 524 0.099968 CAAGCAATCCCACATCAGCG 59.900 55.000 0.00 0.00 0.00 5.18
524 525 0.322816 AAGCAATCCCACATCAGCGT 60.323 50.000 0.00 0.00 0.00 5.07
525 526 0.541392 AGCAATCCCACATCAGCGTA 59.459 50.000 0.00 0.00 0.00 4.42
527 528 1.742831 GCAATCCCACATCAGCGTAAA 59.257 47.619 0.00 0.00 0.00 2.01
528 529 2.223340 GCAATCCCACATCAGCGTAAAG 60.223 50.000 0.00 0.00 0.00 1.85
554 623 2.037902 TGCGTGGAAGTATCTTTGGACA 59.962 45.455 0.00 0.00 0.00 4.02
590 659 5.012893 ACTTTGGGCCTCTTTTCTTATCAG 58.987 41.667 4.53 0.00 0.00 2.90
615 695 1.064389 AGATTGGGACCCTTTAGCTGC 60.064 52.381 13.00 0.00 0.00 5.25
621 701 2.245438 GACCCTTTAGCTGCTCGGCT 62.245 60.000 4.91 8.40 45.29 5.52
654 734 8.250332 TGTAAGATTTAATTGGGCTTGATGTTC 58.750 33.333 0.00 0.00 0.00 3.18
656 736 6.870769 AGATTTAATTGGGCTTGATGTTCAG 58.129 36.000 0.00 0.00 0.00 3.02
657 737 6.664816 AGATTTAATTGGGCTTGATGTTCAGA 59.335 34.615 0.00 0.00 0.00 3.27
658 738 6.662865 TTTAATTGGGCTTGATGTTCAGAA 57.337 33.333 0.00 0.00 0.00 3.02
659 739 6.662865 TTAATTGGGCTTGATGTTCAGAAA 57.337 33.333 0.00 0.00 0.00 2.52
660 740 5.549742 AATTGGGCTTGATGTTCAGAAAA 57.450 34.783 0.00 0.00 0.00 2.29
661 741 5.549742 ATTGGGCTTGATGTTCAGAAAAA 57.450 34.783 0.00 0.00 0.00 1.94
662 742 4.589216 TGGGCTTGATGTTCAGAAAAAG 57.411 40.909 0.00 0.00 0.00 2.27
663 743 3.321682 TGGGCTTGATGTTCAGAAAAAGG 59.678 43.478 0.00 0.00 0.00 3.11
664 744 3.320626 GGCTTGATGTTCAGAAAAAGGC 58.679 45.455 6.84 6.84 33.83 4.35
665 745 3.006217 GGCTTGATGTTCAGAAAAAGGCT 59.994 43.478 12.11 0.00 37.27 4.58
666 746 4.502087 GGCTTGATGTTCAGAAAAAGGCTT 60.502 41.667 0.00 0.00 37.27 4.35
667 747 4.446719 GCTTGATGTTCAGAAAAAGGCTTG 59.553 41.667 0.00 0.00 0.00 4.01
668 748 5.737063 GCTTGATGTTCAGAAAAAGGCTTGA 60.737 40.000 0.00 0.00 0.00 3.02
669 749 6.409524 TTGATGTTCAGAAAAAGGCTTGAT 57.590 33.333 0.00 0.00 0.00 2.57
670 750 5.775686 TGATGTTCAGAAAAAGGCTTGATG 58.224 37.500 0.00 0.00 0.00 3.07
671 751 5.302568 TGATGTTCAGAAAAAGGCTTGATGT 59.697 36.000 0.00 0.00 0.00 3.06
672 752 5.596836 TGTTCAGAAAAAGGCTTGATGTT 57.403 34.783 0.00 0.00 0.00 2.71
673 753 5.976458 TGTTCAGAAAAAGGCTTGATGTTT 58.024 33.333 0.00 0.00 0.00 2.83
674 754 6.042143 TGTTCAGAAAAAGGCTTGATGTTTC 58.958 36.000 12.17 12.17 0.00 2.78
885 993 0.388520 CTGTCGTCTTCACCATCGCA 60.389 55.000 0.00 0.00 0.00 5.10
888 996 0.179111 TCGTCTTCACCATCGCATCC 60.179 55.000 0.00 0.00 0.00 3.51
889 997 0.179100 CGTCTTCACCATCGCATCCT 60.179 55.000 0.00 0.00 0.00 3.24
890 998 1.740380 CGTCTTCACCATCGCATCCTT 60.740 52.381 0.00 0.00 0.00 3.36
900 1008 3.379372 CCATCGCATCCTTCTTGTTCAAT 59.621 43.478 0.00 0.00 0.00 2.57
933 1047 4.229639 TCCTCTCCTTCATGCATATGTCT 58.770 43.478 0.00 0.00 35.73 3.41
935 1049 4.040095 CCTCTCCTTCATGCATATGTCTCA 59.960 45.833 0.00 0.00 35.73 3.27
948 1063 1.004440 GTCTCAGCTTCGGTTGGCT 60.004 57.895 0.00 0.00 39.60 4.75
999 1114 0.107459 CTTCAACAGGGGGCTAGCTC 60.107 60.000 15.72 11.22 0.00 4.09
1105 1230 4.469227 AGTGATACTTGTCCATCTTCTGCT 59.531 41.667 0.00 0.00 0.00 4.24
1214 1339 3.313690 CGTACAAATTGCCAAAACCCTC 58.686 45.455 0.00 0.00 0.00 4.30
1287 1417 5.044476 TCCCTCCAACAGATTTGGCTAAATA 60.044 40.000 8.15 0.00 39.38 1.40
1490 1627 1.676967 GCTAGCCAAACCTGCTGCT 60.677 57.895 2.29 0.00 39.91 4.24
1491 1628 1.652167 GCTAGCCAAACCTGCTGCTC 61.652 60.000 2.29 0.00 39.91 4.26
1501 1641 3.564262 CTGCTGCTCCAGGATCAAA 57.436 52.632 0.00 0.00 30.16 2.69
1584 1724 1.666011 GCTCCACTCGACAAGTCCA 59.334 57.895 0.00 0.00 35.45 4.02
1610 1750 1.243342 CCGCTCAAAAGCCATCACCA 61.243 55.000 0.00 0.00 46.34 4.17
1654 1794 2.570181 CTCGCCGAACCGTACCTT 59.430 61.111 0.00 0.00 0.00 3.50
1707 1847 2.339418 ACGTGAGACAACGAAACACAA 58.661 42.857 3.45 0.00 46.49 3.33
1761 1904 1.919918 CGCCACTGACTGATCTTCTC 58.080 55.000 0.00 0.00 0.00 2.87
1780 1923 1.228245 GTGTTTCCAGAGGCAGCCA 60.228 57.895 15.80 0.00 0.00 4.75
1788 1931 2.203126 GAGGCAGCCAAGGATCGG 60.203 66.667 15.80 0.00 0.00 4.18
1989 2132 2.202676 CGAAGAGGCGCTGGAGAC 60.203 66.667 7.64 0.00 0.00 3.36
2125 2268 1.867363 ATTCCCTCGCTAAGGTGACT 58.133 50.000 1.79 0.00 44.56 3.41
2407 2550 2.224402 GGTCAGAGCAGAAGAAGTGGTT 60.224 50.000 0.00 0.00 0.00 3.67
2620 2763 1.004080 GCTGACAGAGAAGGCTGCA 60.004 57.895 6.65 0.00 39.51 4.41
2736 2879 3.307059 GCTACCATTGACAGACTGAGGTT 60.307 47.826 10.08 0.00 0.00 3.50
2759 2902 3.506067 TGAACACGAGCTACTGAATGAGA 59.494 43.478 0.00 0.00 0.00 3.27
3108 3251 2.309755 TGGAATCAGAGGCCAAGAATGT 59.690 45.455 5.01 0.00 0.00 2.71
3164 3307 5.104693 TCCAACTACCTCAAGAAAACAGTCA 60.105 40.000 0.00 0.00 0.00 3.41
3229 3372 1.072505 GAAGGAGGTCGGGTTTGCA 59.927 57.895 0.00 0.00 0.00 4.08
3455 3598 1.577736 CTCCCACCTCAAGGATCTGT 58.422 55.000 2.30 0.00 38.94 3.41
3766 3909 3.120060 GCTCGAGTGCAGAACAATCAATT 60.120 43.478 15.13 0.00 43.60 2.32
3807 3950 2.082231 CAAGGATCTGCTGTCAACCAG 58.918 52.381 0.00 0.00 44.53 4.00
4201 4344 2.125512 AGCATCGCACGGGAGAAC 60.126 61.111 0.00 0.00 0.00 3.01
4300 4443 3.492309 CCATGAAAGGAGGAGATCAGTCG 60.492 52.174 0.00 0.00 0.00 4.18
4627 4770 0.175302 AAGACGGAGCTGCAGATCAG 59.825 55.000 31.24 29.08 45.62 2.90
4801 4949 5.047235 TCCTAGCCTAGAAACTCAAACTGTC 60.047 44.000 0.00 0.00 0.00 3.51
4813 4961 9.095065 GAAACTCAAACTGTCACTACTTCTTTA 57.905 33.333 0.00 0.00 0.00 1.85
5113 5264 2.878406 GGGCTTGTATTATCATGCACGT 59.122 45.455 0.00 0.00 39.28 4.49
5193 5344 1.186200 GTTCATCCAAGGGGGCTTTC 58.814 55.000 0.00 0.00 36.21 2.62
5199 5350 0.407918 CCAAGGGGGCTTTCAGGTAA 59.592 55.000 0.00 0.00 0.00 2.85
5247 5398 4.389374 TGTTCAGGAAAGTAAAGCTGGAG 58.611 43.478 0.00 0.00 0.00 3.86
5253 5404 5.412904 CAGGAAAGTAAAGCTGGAGTTAAGG 59.587 44.000 0.00 0.00 0.00 2.69
5270 5421 5.940470 AGTTAAGGCTGAAGAATGTTACCAG 59.060 40.000 0.00 0.00 0.00 4.00
5275 5426 6.485171 AGGCTGAAGAATGTTACCAGTAAAT 58.515 36.000 0.00 0.00 0.00 1.40
5290 5441 1.065126 GTAAATGCTGGGAGGCTCAGT 60.065 52.381 17.69 0.00 34.89 3.41
5292 5443 1.516110 AATGCTGGGAGGCTCAGTAT 58.484 50.000 17.69 8.82 38.80 2.12
5473 5624 6.915349 TGGTTTTTGTCCTTCGGTTTATATG 58.085 36.000 0.00 0.00 0.00 1.78
5580 5739 2.723322 TAGCAAGCAAGCAGATGGAT 57.277 45.000 3.19 0.00 36.85 3.41
5653 5812 2.952310 AGCCTTTTCCCATATTCTTCGC 59.048 45.455 0.00 0.00 0.00 4.70
5739 5913 1.421268 AGACCATGACAGCCACTTCAA 59.579 47.619 0.00 0.00 0.00 2.69
5748 5922 6.899393 TGACAGCCACTTCAATTTCTTTAT 57.101 33.333 0.00 0.00 0.00 1.40
5976 6151 1.004320 CCGGTTGATTGGACGGTCA 60.004 57.895 10.76 0.00 41.34 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.350951 TGAATTCATTTGAGATGAGCTTGATAT 57.649 29.630 3.38 0.00 0.00 1.63
6 7 8.741603 TGAATTCATTTGAGATGAGCTTGATA 57.258 30.769 3.38 0.00 0.00 2.15
7 8 7.640597 TGAATTCATTTGAGATGAGCTTGAT 57.359 32.000 3.38 0.00 0.00 2.57
8 9 7.457024 TTGAATTCATTTGAGATGAGCTTGA 57.543 32.000 9.40 0.00 0.00 3.02
9 10 8.433126 GTTTTGAATTCATTTGAGATGAGCTTG 58.567 33.333 9.40 0.00 0.00 4.01
10 11 8.145767 TGTTTTGAATTCATTTGAGATGAGCTT 58.854 29.630 9.40 0.00 0.00 3.74
11 12 7.663827 TGTTTTGAATTCATTTGAGATGAGCT 58.336 30.769 9.40 0.00 0.00 4.09
12 13 7.878477 TGTTTTGAATTCATTTGAGATGAGC 57.122 32.000 9.40 0.00 0.00 4.26
58 59 9.407380 TGTGGCTTGATGAACTATGTAATAAAT 57.593 29.630 0.00 0.00 0.00 1.40
59 60 8.800370 TGTGGCTTGATGAACTATGTAATAAA 57.200 30.769 0.00 0.00 0.00 1.40
60 61 8.673711 GTTGTGGCTTGATGAACTATGTAATAA 58.326 33.333 0.00 0.00 0.00 1.40
61 62 7.826744 TGTTGTGGCTTGATGAACTATGTAATA 59.173 33.333 0.00 0.00 0.00 0.98
62 63 6.658816 TGTTGTGGCTTGATGAACTATGTAAT 59.341 34.615 0.00 0.00 0.00 1.89
63 64 6.000840 TGTTGTGGCTTGATGAACTATGTAA 58.999 36.000 0.00 0.00 0.00 2.41
64 65 5.555966 TGTTGTGGCTTGATGAACTATGTA 58.444 37.500 0.00 0.00 0.00 2.29
65 66 4.397420 TGTTGTGGCTTGATGAACTATGT 58.603 39.130 0.00 0.00 0.00 2.29
66 67 5.124297 TGATGTTGTGGCTTGATGAACTATG 59.876 40.000 0.00 0.00 0.00 2.23
67 68 5.255687 TGATGTTGTGGCTTGATGAACTAT 58.744 37.500 0.00 0.00 0.00 2.12
68 69 4.650734 TGATGTTGTGGCTTGATGAACTA 58.349 39.130 0.00 0.00 0.00 2.24
69 70 3.489355 TGATGTTGTGGCTTGATGAACT 58.511 40.909 0.00 0.00 0.00 3.01
70 71 3.921119 TGATGTTGTGGCTTGATGAAC 57.079 42.857 0.00 0.00 0.00 3.18
71 72 4.933505 TTTGATGTTGTGGCTTGATGAA 57.066 36.364 0.00 0.00 0.00 2.57
72 73 4.933505 TTTTGATGTTGTGGCTTGATGA 57.066 36.364 0.00 0.00 0.00 2.92
73 74 7.171167 TGTTAATTTTGATGTTGTGGCTTGATG 59.829 33.333 0.00 0.00 0.00 3.07
74 75 7.171337 GTGTTAATTTTGATGTTGTGGCTTGAT 59.829 33.333 0.00 0.00 0.00 2.57
75 76 6.478344 GTGTTAATTTTGATGTTGTGGCTTGA 59.522 34.615 0.00 0.00 0.00 3.02
76 77 6.257411 TGTGTTAATTTTGATGTTGTGGCTTG 59.743 34.615 0.00 0.00 0.00 4.01
77 78 6.344500 TGTGTTAATTTTGATGTTGTGGCTT 58.656 32.000 0.00 0.00 0.00 4.35
78 79 5.911752 TGTGTTAATTTTGATGTTGTGGCT 58.088 33.333 0.00 0.00 0.00 4.75
79 80 6.595772 TTGTGTTAATTTTGATGTTGTGGC 57.404 33.333 0.00 0.00 0.00 5.01
80 81 9.435802 CAATTTGTGTTAATTTTGATGTTGTGG 57.564 29.630 0.00 0.00 0.00 4.17
81 82 9.985318 ACAATTTGTGTTAATTTTGATGTTGTG 57.015 25.926 0.15 0.00 37.01 3.33
106 107 8.364129 ACAATTTGGTGTTATGTTTGATGAAC 57.636 30.769 0.78 0.00 38.78 3.18
107 108 8.954950 AACAATTTGGTGTTATGTTTGATGAA 57.045 26.923 0.78 0.00 39.94 2.57
108 109 8.200120 TGAACAATTTGGTGTTATGTTTGATGA 58.800 29.630 0.78 0.00 41.78 2.92
109 110 8.362860 TGAACAATTTGGTGTTATGTTTGATG 57.637 30.769 0.78 0.00 41.78 3.07
110 111 9.206870 GATGAACAATTTGGTGTTATGTTTGAT 57.793 29.630 0.78 0.00 41.78 2.57
111 112 8.200120 TGATGAACAATTTGGTGTTATGTTTGA 58.800 29.630 0.78 0.00 41.78 2.69
112 113 8.362860 TGATGAACAATTTGGTGTTATGTTTG 57.637 30.769 0.78 0.00 41.78 2.93
113 114 9.206870 GATGATGAACAATTTGGTGTTATGTTT 57.793 29.630 0.78 0.00 41.78 2.83
114 115 8.366401 TGATGATGAACAATTTGGTGTTATGTT 58.634 29.630 0.78 0.00 41.78 2.71
115 116 7.814107 GTGATGATGAACAATTTGGTGTTATGT 59.186 33.333 0.78 0.00 41.78 2.29
116 117 7.813627 TGTGATGATGAACAATTTGGTGTTATG 59.186 33.333 0.78 0.00 41.78 1.90
117 118 7.814107 GTGTGATGATGAACAATTTGGTGTTAT 59.186 33.333 0.78 0.00 41.78 1.89
118 119 7.144661 GTGTGATGATGAACAATTTGGTGTTA 58.855 34.615 0.78 0.00 41.78 2.41
119 120 5.984926 GTGTGATGATGAACAATTTGGTGTT 59.015 36.000 0.78 0.00 44.38 3.32
120 121 5.068855 TGTGTGATGATGAACAATTTGGTGT 59.931 36.000 0.78 0.00 0.00 4.16
121 122 5.530712 TGTGTGATGATGAACAATTTGGTG 58.469 37.500 0.78 0.00 0.00 4.17
122 123 5.787953 TGTGTGATGATGAACAATTTGGT 57.212 34.783 0.78 0.00 0.00 3.67
123 124 7.314393 TGTATGTGTGATGATGAACAATTTGG 58.686 34.615 0.78 0.00 0.00 3.28
124 125 8.803799 CATGTATGTGTGATGATGAACAATTTG 58.196 33.333 0.00 0.00 0.00 2.32
125 126 8.741841 TCATGTATGTGTGATGATGAACAATTT 58.258 29.630 0.00 0.00 0.00 1.82
126 127 8.283699 TCATGTATGTGTGATGATGAACAATT 57.716 30.769 0.00 0.00 0.00 2.32
127 128 7.868906 TCATGTATGTGTGATGATGAACAAT 57.131 32.000 0.00 0.00 0.00 2.71
128 129 7.684937 TTCATGTATGTGTGATGATGAACAA 57.315 32.000 0.00 0.00 0.00 2.83
129 130 7.174599 TGTTTCATGTATGTGTGATGATGAACA 59.825 33.333 0.00 0.00 31.33 3.18
130 131 7.529158 TGTTTCATGTATGTGTGATGATGAAC 58.471 34.615 0.00 0.00 31.33 3.18
131 132 7.684937 TGTTTCATGTATGTGTGATGATGAA 57.315 32.000 0.00 0.00 0.00 2.57
132 133 7.868906 ATGTTTCATGTATGTGTGATGATGA 57.131 32.000 0.00 0.00 0.00 2.92
133 134 9.048446 TCTATGTTTCATGTATGTGTGATGATG 57.952 33.333 0.00 0.00 0.00 3.07
134 135 9.269453 CTCTATGTTTCATGTATGTGTGATGAT 57.731 33.333 0.00 0.00 0.00 2.45
135 136 8.477256 TCTCTATGTTTCATGTATGTGTGATGA 58.523 33.333 0.00 0.00 0.00 2.92
136 137 8.652810 TCTCTATGTTTCATGTATGTGTGATG 57.347 34.615 0.00 0.00 0.00 3.07
137 138 9.269453 CATCTCTATGTTTCATGTATGTGTGAT 57.731 33.333 0.00 0.00 0.00 3.06
138 139 8.477256 TCATCTCTATGTTTCATGTATGTGTGA 58.523 33.333 0.00 0.00 34.50 3.58
139 140 8.652810 TCATCTCTATGTTTCATGTATGTGTG 57.347 34.615 0.00 0.00 34.50 3.82
140 141 9.671279 TTTCATCTCTATGTTTCATGTATGTGT 57.329 29.630 0.00 0.00 34.50 3.72
141 142 9.926751 GTTTCATCTCTATGTTTCATGTATGTG 57.073 33.333 0.00 0.00 34.50 3.21
142 143 9.113838 GGTTTCATCTCTATGTTTCATGTATGT 57.886 33.333 0.00 0.00 34.50 2.29
143 144 9.112725 TGGTTTCATCTCTATGTTTCATGTATG 57.887 33.333 0.00 0.00 34.50 2.39
144 145 9.334947 CTGGTTTCATCTCTATGTTTCATGTAT 57.665 33.333 0.00 0.00 34.50 2.29
145 146 8.321353 ACTGGTTTCATCTCTATGTTTCATGTA 58.679 33.333 0.00 0.00 34.50 2.29
146 147 7.120285 CACTGGTTTCATCTCTATGTTTCATGT 59.880 37.037 0.00 0.00 34.50 3.21
147 148 7.414873 CCACTGGTTTCATCTCTATGTTTCATG 60.415 40.741 0.00 0.00 34.50 3.07
148 149 6.600822 CCACTGGTTTCATCTCTATGTTTCAT 59.399 38.462 0.00 0.00 34.50 2.57
149 150 5.939883 CCACTGGTTTCATCTCTATGTTTCA 59.060 40.000 0.00 0.00 34.50 2.69
150 151 5.355350 CCCACTGGTTTCATCTCTATGTTTC 59.645 44.000 0.00 0.00 34.50 2.78
151 152 5.256474 CCCACTGGTTTCATCTCTATGTTT 58.744 41.667 0.00 0.00 34.50 2.83
152 153 4.848357 CCCACTGGTTTCATCTCTATGTT 58.152 43.478 0.00 0.00 34.50 2.71
153 154 3.370953 GCCCACTGGTTTCATCTCTATGT 60.371 47.826 0.00 0.00 34.50 2.29
154 155 3.118112 AGCCCACTGGTTTCATCTCTATG 60.118 47.826 0.00 0.00 0.00 2.23
155 156 3.118531 AGCCCACTGGTTTCATCTCTAT 58.881 45.455 0.00 0.00 0.00 1.98
156 157 2.551270 AGCCCACTGGTTTCATCTCTA 58.449 47.619 0.00 0.00 0.00 2.43
157 158 1.366319 AGCCCACTGGTTTCATCTCT 58.634 50.000 0.00 0.00 0.00 3.10
158 159 1.815003 CAAGCCCACTGGTTTCATCTC 59.185 52.381 0.00 0.00 31.91 2.75
159 160 1.145738 ACAAGCCCACTGGTTTCATCT 59.854 47.619 0.00 0.00 31.91 2.90
160 161 1.620822 ACAAGCCCACTGGTTTCATC 58.379 50.000 0.00 0.00 31.91 2.92
161 162 2.086610 AACAAGCCCACTGGTTTCAT 57.913 45.000 0.00 0.00 36.61 2.57
162 163 2.303175 GTAACAAGCCCACTGGTTTCA 58.697 47.619 0.00 0.00 36.61 2.69
163 164 2.034179 GTGTAACAAGCCCACTGGTTTC 59.966 50.000 0.00 0.00 36.61 2.78
164 165 2.028876 GTGTAACAAGCCCACTGGTTT 58.971 47.619 0.00 0.00 36.61 3.27
165 166 1.687563 GTGTAACAAGCCCACTGGTT 58.312 50.000 0.00 0.00 42.88 3.67
166 167 3.414486 GTGTAACAAGCCCACTGGT 57.586 52.632 0.00 0.00 36.32 4.00
174 175 4.082787 ACAAGGCATGTATGTGTAACAAGC 60.083 41.667 0.00 0.00 42.80 4.01
175 176 5.627499 ACAAGGCATGTATGTGTAACAAG 57.373 39.130 0.00 0.00 42.80 3.16
178 179 4.454161 TGTGACAAGGCATGTATGTGTAAC 59.546 41.667 0.00 3.97 44.12 2.50
179 180 4.454161 GTGTGACAAGGCATGTATGTGTAA 59.546 41.667 0.00 0.00 44.12 2.41
180 181 4.000325 GTGTGACAAGGCATGTATGTGTA 59.000 43.478 0.00 0.00 44.12 2.90
181 182 2.813754 GTGTGACAAGGCATGTATGTGT 59.186 45.455 0.00 0.01 44.12 3.72
182 183 2.813172 TGTGTGACAAGGCATGTATGTG 59.187 45.455 0.00 0.00 44.12 3.21
183 184 3.138884 TGTGTGACAAGGCATGTATGT 57.861 42.857 0.00 0.00 44.12 2.29
184 185 5.123661 TGTTATGTGTGACAAGGCATGTATG 59.876 40.000 0.00 0.00 44.12 2.39
185 186 5.123820 GTGTTATGTGTGACAAGGCATGTAT 59.876 40.000 0.00 0.00 44.12 2.29
186 187 4.454161 GTGTTATGTGTGACAAGGCATGTA 59.546 41.667 0.00 0.00 44.12 2.29
188 189 3.252944 TGTGTTATGTGTGACAAGGCATG 59.747 43.478 0.00 0.00 0.00 4.06
189 190 3.485394 TGTGTTATGTGTGACAAGGCAT 58.515 40.909 0.00 0.00 0.00 4.40
190 191 2.924421 TGTGTTATGTGTGACAAGGCA 58.076 42.857 0.00 0.00 0.00 4.75
191 192 3.980646 TTGTGTTATGTGTGACAAGGC 57.019 42.857 0.00 0.00 0.00 4.35
192 193 7.769272 AAAATTTGTGTTATGTGTGACAAGG 57.231 32.000 0.00 0.00 30.37 3.61
193 194 8.468349 CGTAAAATTTGTGTTATGTGTGACAAG 58.532 33.333 0.00 0.00 30.37 3.16
194 195 7.043986 GCGTAAAATTTGTGTTATGTGTGACAA 60.044 33.333 0.00 0.00 0.00 3.18
195 196 6.415280 GCGTAAAATTTGTGTTATGTGTGACA 59.585 34.615 0.00 0.00 0.00 3.58
196 197 6.635239 AGCGTAAAATTTGTGTTATGTGTGAC 59.365 34.615 0.00 0.00 0.00 3.67
197 198 6.634837 CAGCGTAAAATTTGTGTTATGTGTGA 59.365 34.615 0.00 0.00 0.00 3.58
198 199 6.613328 GCAGCGTAAAATTTGTGTTATGTGTG 60.613 38.462 0.00 0.00 0.00 3.82
199 200 5.401079 GCAGCGTAAAATTTGTGTTATGTGT 59.599 36.000 0.00 0.00 0.00 3.72
200 201 5.629020 AGCAGCGTAAAATTTGTGTTATGTG 59.371 36.000 0.00 0.00 0.00 3.21
201 202 5.629020 CAGCAGCGTAAAATTTGTGTTATGT 59.371 36.000 0.00 0.00 0.00 2.29
202 203 5.443170 GCAGCAGCGTAAAATTTGTGTTATG 60.443 40.000 0.00 0.00 0.00 1.90
203 204 4.621034 GCAGCAGCGTAAAATTTGTGTTAT 59.379 37.500 0.00 0.00 0.00 1.89
204 205 3.978217 GCAGCAGCGTAAAATTTGTGTTA 59.022 39.130 0.00 0.00 0.00 2.41
205 206 2.794350 GCAGCAGCGTAAAATTTGTGTT 59.206 40.909 0.00 0.00 0.00 3.32
206 207 2.393764 GCAGCAGCGTAAAATTTGTGT 58.606 42.857 0.00 0.00 0.00 3.72
229 230 1.515081 CCCCAAGTGCTGCAAATTTG 58.485 50.000 14.03 14.03 0.00 2.32
230 231 0.250424 GCCCCAAGTGCTGCAAATTT 60.250 50.000 2.77 0.00 0.00 1.82
231 232 1.372307 GCCCCAAGTGCTGCAAATT 59.628 52.632 2.77 0.00 0.00 1.82
232 233 1.409251 TTGCCCCAAGTGCTGCAAAT 61.409 50.000 2.77 0.00 40.46 2.32
233 234 2.062777 TTGCCCCAAGTGCTGCAAA 61.063 52.632 2.77 0.00 40.46 3.68
234 235 1.620739 TTTTGCCCCAAGTGCTGCAA 61.621 50.000 2.77 0.00 41.57 4.08
235 236 1.409251 ATTTTGCCCCAAGTGCTGCA 61.409 50.000 0.00 0.00 0.00 4.41
236 237 0.250424 AATTTTGCCCCAAGTGCTGC 60.250 50.000 0.00 0.00 0.00 5.25
237 238 2.259266 AAATTTTGCCCCAAGTGCTG 57.741 45.000 0.00 0.00 0.00 4.41
238 239 2.574450 CAAAATTTTGCCCCAAGTGCT 58.426 42.857 17.48 0.00 0.00 4.40
239 240 1.608109 CCAAAATTTTGCCCCAAGTGC 59.392 47.619 22.90 0.00 36.86 4.40
240 241 2.228925 CCCAAAATTTTGCCCCAAGTG 58.771 47.619 22.90 8.57 36.86 3.16
241 242 1.144708 CCCCAAAATTTTGCCCCAAGT 59.855 47.619 22.90 0.00 36.86 3.16
242 243 1.908344 CCCCAAAATTTTGCCCCAAG 58.092 50.000 22.90 9.85 36.86 3.61
243 244 0.178978 GCCCCAAAATTTTGCCCCAA 60.179 50.000 22.90 0.00 36.86 4.12
244 245 1.064824 AGCCCCAAAATTTTGCCCCA 61.065 50.000 22.90 0.00 36.86 4.96
245 246 0.608856 CAGCCCCAAAATTTTGCCCC 60.609 55.000 22.90 13.17 36.86 5.80
246 247 1.243342 GCAGCCCCAAAATTTTGCCC 61.243 55.000 22.90 13.48 36.86 5.36
247 248 1.243342 GGCAGCCCCAAAATTTTGCC 61.243 55.000 22.90 17.44 43.54 4.52
248 249 2.256391 GGCAGCCCCAAAATTTTGC 58.744 52.632 22.90 13.39 36.86 3.68
259 260 0.597568 GCAAAAATTTTGGGCAGCCC 59.402 50.000 25.54 25.54 45.71 5.19
260 261 1.267533 CTGCAAAAATTTTGGGCAGCC 59.732 47.619 29.48 1.26 40.24 4.85
261 262 2.691984 CTGCAAAAATTTTGGGCAGC 57.308 45.000 29.48 18.45 40.24 5.25
262 263 1.948145 TGCTGCAAAAATTTTGGGCAG 59.052 42.857 32.76 32.76 44.99 4.85
263 264 2.048444 TGCTGCAAAAATTTTGGGCA 57.952 40.000 22.01 22.01 32.62 5.36
264 265 2.553172 TCATGCTGCAAAAATTTTGGGC 59.447 40.909 18.67 16.74 0.00 5.36
265 266 4.066490 TCTCATGCTGCAAAAATTTTGGG 58.934 39.130 18.67 0.00 0.00 4.12
266 267 5.873179 ATCTCATGCTGCAAAAATTTTGG 57.127 34.783 18.67 2.03 0.00 3.28
267 268 7.758076 TCTCTATCTCATGCTGCAAAAATTTTG 59.242 33.333 13.64 13.64 0.00 2.44
268 269 7.833786 TCTCTATCTCATGCTGCAAAAATTTT 58.166 30.769 6.36 0.00 0.00 1.82
269 270 7.400599 TCTCTATCTCATGCTGCAAAAATTT 57.599 32.000 6.36 0.00 0.00 1.82
270 271 7.584122 ATCTCTATCTCATGCTGCAAAAATT 57.416 32.000 6.36 0.00 0.00 1.82
271 272 7.390996 CCTATCTCTATCTCATGCTGCAAAAAT 59.609 37.037 6.36 0.97 0.00 1.82
272 273 6.709397 CCTATCTCTATCTCATGCTGCAAAAA 59.291 38.462 6.36 0.00 0.00 1.94
273 274 6.228995 CCTATCTCTATCTCATGCTGCAAAA 58.771 40.000 6.36 0.00 0.00 2.44
274 275 5.279859 CCCTATCTCTATCTCATGCTGCAAA 60.280 44.000 6.36 0.00 0.00 3.68
275 276 4.222366 CCCTATCTCTATCTCATGCTGCAA 59.778 45.833 6.36 0.00 0.00 4.08
276 277 3.768215 CCCTATCTCTATCTCATGCTGCA 59.232 47.826 4.13 4.13 0.00 4.41
277 278 3.430651 GCCCTATCTCTATCTCATGCTGC 60.431 52.174 0.00 0.00 0.00 5.25
278 279 3.768215 TGCCCTATCTCTATCTCATGCTG 59.232 47.826 0.00 0.00 0.00 4.41
279 280 4.025360 CTGCCCTATCTCTATCTCATGCT 58.975 47.826 0.00 0.00 0.00 3.79
280 281 3.768757 ACTGCCCTATCTCTATCTCATGC 59.231 47.826 0.00 0.00 0.00 4.06
281 282 5.245751 ACAACTGCCCTATCTCTATCTCATG 59.754 44.000 0.00 0.00 0.00 3.07
282 283 5.401750 ACAACTGCCCTATCTCTATCTCAT 58.598 41.667 0.00 0.00 0.00 2.90
283 284 4.809193 ACAACTGCCCTATCTCTATCTCA 58.191 43.478 0.00 0.00 0.00 3.27
284 285 5.303078 TCAACAACTGCCCTATCTCTATCTC 59.697 44.000 0.00 0.00 0.00 2.75
285 286 5.211973 TCAACAACTGCCCTATCTCTATCT 58.788 41.667 0.00 0.00 0.00 1.98
286 287 5.537300 TCAACAACTGCCCTATCTCTATC 57.463 43.478 0.00 0.00 0.00 2.08
287 288 5.686124 GCTTCAACAACTGCCCTATCTCTAT 60.686 44.000 0.00 0.00 0.00 1.98
288 289 4.383118 GCTTCAACAACTGCCCTATCTCTA 60.383 45.833 0.00 0.00 0.00 2.43
289 290 3.620966 GCTTCAACAACTGCCCTATCTCT 60.621 47.826 0.00 0.00 0.00 3.10
290 291 2.680339 GCTTCAACAACTGCCCTATCTC 59.320 50.000 0.00 0.00 0.00 2.75
291 292 2.040278 TGCTTCAACAACTGCCCTATCT 59.960 45.455 0.00 0.00 0.00 1.98
292 293 2.162408 GTGCTTCAACAACTGCCCTATC 59.838 50.000 0.00 0.00 0.00 2.08
293 294 2.162681 GTGCTTCAACAACTGCCCTAT 58.837 47.619 0.00 0.00 0.00 2.57
294 295 1.604604 GTGCTTCAACAACTGCCCTA 58.395 50.000 0.00 0.00 0.00 3.53
295 296 1.109323 GGTGCTTCAACAACTGCCCT 61.109 55.000 0.00 0.00 0.00 5.19
296 297 1.363807 GGTGCTTCAACAACTGCCC 59.636 57.895 0.00 0.00 0.00 5.36
297 298 1.008538 CGGTGCTTCAACAACTGCC 60.009 57.895 0.00 0.00 0.00 4.85
298 299 0.100503 AACGGTGCTTCAACAACTGC 59.899 50.000 0.00 0.00 0.00 4.40
299 300 2.559998 AAACGGTGCTTCAACAACTG 57.440 45.000 0.00 0.00 0.00 3.16
300 301 3.586100 AAAAACGGTGCTTCAACAACT 57.414 38.095 0.00 0.00 0.00 3.16
301 302 3.794564 CCTAAAAACGGTGCTTCAACAAC 59.205 43.478 0.00 0.00 0.00 3.32
302 303 3.444388 ACCTAAAAACGGTGCTTCAACAA 59.556 39.130 0.00 0.00 32.41 2.83
303 304 3.018149 ACCTAAAAACGGTGCTTCAACA 58.982 40.909 0.00 0.00 32.41 3.33
304 305 3.703286 ACCTAAAAACGGTGCTTCAAC 57.297 42.857 0.00 0.00 32.41 3.18
305 306 3.695060 TGAACCTAAAAACGGTGCTTCAA 59.305 39.130 0.00 0.00 34.33 2.69
306 307 3.280295 TGAACCTAAAAACGGTGCTTCA 58.720 40.909 0.00 0.00 34.33 3.02
307 308 3.974871 TGAACCTAAAAACGGTGCTTC 57.025 42.857 0.00 0.00 34.33 3.86
308 309 4.722361 TTTGAACCTAAAAACGGTGCTT 57.278 36.364 0.00 0.00 34.33 3.91
309 310 4.616953 CATTTGAACCTAAAAACGGTGCT 58.383 39.130 0.00 0.00 34.33 4.40
310 311 3.183574 GCATTTGAACCTAAAAACGGTGC 59.816 43.478 0.00 0.00 34.33 5.01
311 312 3.738791 GGCATTTGAACCTAAAAACGGTG 59.261 43.478 0.00 0.00 34.33 4.94
312 313 3.243941 GGGCATTTGAACCTAAAAACGGT 60.244 43.478 0.00 0.00 35.97 4.83
313 314 3.006430 AGGGCATTTGAACCTAAAAACGG 59.994 43.478 0.00 0.00 31.53 4.44
314 315 4.251543 AGGGCATTTGAACCTAAAAACG 57.748 40.909 0.00 0.00 31.53 3.60
315 316 6.517605 TGTTAGGGCATTTGAACCTAAAAAC 58.482 36.000 12.75 7.08 45.51 2.43
316 317 6.732896 TGTTAGGGCATTTGAACCTAAAAA 57.267 33.333 12.75 5.52 45.51 1.94
317 318 6.926630 ATGTTAGGGCATTTGAACCTAAAA 57.073 33.333 12.75 9.76 45.51 1.52
318 319 7.179269 ACTATGTTAGGGCATTTGAACCTAAA 58.821 34.615 12.75 7.03 45.51 1.85
319 320 6.727394 ACTATGTTAGGGCATTTGAACCTAA 58.273 36.000 9.01 9.01 42.80 2.69
320 321 6.321821 ACTATGTTAGGGCATTTGAACCTA 57.678 37.500 0.00 0.00 35.84 3.08
321 322 5.193099 ACTATGTTAGGGCATTTGAACCT 57.807 39.130 0.00 0.00 38.40 3.50
322 323 7.582667 AATACTATGTTAGGGCATTTGAACC 57.417 36.000 0.00 0.00 0.00 3.62
323 324 9.301153 CAAAATACTATGTTAGGGCATTTGAAC 57.699 33.333 0.00 0.00 0.00 3.18
324 325 9.249053 TCAAAATACTATGTTAGGGCATTTGAA 57.751 29.630 0.00 0.00 31.61 2.69
325 326 8.815565 TCAAAATACTATGTTAGGGCATTTGA 57.184 30.769 0.00 0.00 31.84 2.69
326 327 9.301153 GTTCAAAATACTATGTTAGGGCATTTG 57.699 33.333 0.00 0.00 0.00 2.32
327 328 9.030452 TGTTCAAAATACTATGTTAGGGCATTT 57.970 29.630 0.00 0.00 0.00 2.32
328 329 8.588290 TGTTCAAAATACTATGTTAGGGCATT 57.412 30.769 0.00 0.00 0.00 3.56
329 330 8.766994 ATGTTCAAAATACTATGTTAGGGCAT 57.233 30.769 0.00 0.00 0.00 4.40
330 331 8.052748 AGATGTTCAAAATACTATGTTAGGGCA 58.947 33.333 0.00 0.00 0.00 5.36
331 332 8.345565 CAGATGTTCAAAATACTATGTTAGGGC 58.654 37.037 0.00 0.00 0.00 5.19
332 333 9.396022 ACAGATGTTCAAAATACTATGTTAGGG 57.604 33.333 0.00 0.00 0.00 3.53
354 355 9.613428 CTCCAACATATGTAAAAATAGGACAGA 57.387 33.333 9.21 0.00 0.00 3.41
355 356 9.396022 ACTCCAACATATGTAAAAATAGGACAG 57.604 33.333 9.21 1.44 0.00 3.51
356 357 9.173021 CACTCCAACATATGTAAAAATAGGACA 57.827 33.333 9.21 0.00 0.00 4.02
357 358 8.129211 GCACTCCAACATATGTAAAAATAGGAC 58.871 37.037 9.21 0.00 0.00 3.85
358 359 8.052748 AGCACTCCAACATATGTAAAAATAGGA 58.947 33.333 9.21 7.29 0.00 2.94
359 360 8.225603 AGCACTCCAACATATGTAAAAATAGG 57.774 34.615 9.21 3.44 0.00 2.57
377 378 5.715630 AAGAAGCATCTCTAGGAGCACTCC 61.716 50.000 8.74 8.74 41.89 3.85
378 379 2.958355 AGAAGCATCTCTAGGAGCACTC 59.042 50.000 0.00 0.00 0.00 3.51
379 380 3.030873 AGAAGCATCTCTAGGAGCACT 57.969 47.619 0.00 0.00 0.00 4.40
380 381 3.817709 AAGAAGCATCTCTAGGAGCAC 57.182 47.619 0.00 0.00 33.77 4.40
381 382 4.029520 AGAAAGAAGCATCTCTAGGAGCA 58.970 43.478 0.00 0.00 33.77 4.26
382 383 4.670896 AGAAAGAAGCATCTCTAGGAGC 57.329 45.455 0.00 0.00 33.77 4.70
383 384 7.346751 AGTAAGAAAGAAGCATCTCTAGGAG 57.653 40.000 0.00 0.00 33.77 3.69
384 385 7.415765 CGAAGTAAGAAAGAAGCATCTCTAGGA 60.416 40.741 0.00 0.00 33.77 2.94
385 386 6.695278 CGAAGTAAGAAAGAAGCATCTCTAGG 59.305 42.308 0.00 0.00 33.77 3.02
386 387 7.476667 TCGAAGTAAGAAAGAAGCATCTCTAG 58.523 38.462 0.00 0.00 33.77 2.43
387 388 7.121463 ACTCGAAGTAAGAAAGAAGCATCTCTA 59.879 37.037 0.00 0.00 33.77 2.43
388 389 6.071616 ACTCGAAGTAAGAAAGAAGCATCTCT 60.072 38.462 0.00 0.00 33.77 3.10
389 390 6.096695 ACTCGAAGTAAGAAAGAAGCATCTC 58.903 40.000 0.00 0.00 33.77 2.75
390 391 6.031751 ACTCGAAGTAAGAAAGAAGCATCT 57.968 37.500 0.00 0.00 37.57 2.90
391 392 5.864474 TGACTCGAAGTAAGAAAGAAGCATC 59.136 40.000 0.00 0.00 0.00 3.91
392 393 5.784177 TGACTCGAAGTAAGAAAGAAGCAT 58.216 37.500 0.00 0.00 0.00 3.79
393 394 5.196341 TGACTCGAAGTAAGAAAGAAGCA 57.804 39.130 0.00 0.00 0.00 3.91
394 395 5.224135 ACTGACTCGAAGTAAGAAAGAAGC 58.776 41.667 6.43 0.00 30.89 3.86
395 396 8.798748 TTAACTGACTCGAAGTAAGAAAGAAG 57.201 34.615 6.43 0.00 30.89 2.85
396 397 8.411683 ACTTAACTGACTCGAAGTAAGAAAGAA 58.588 33.333 16.43 4.69 32.49 2.52
397 398 7.938715 ACTTAACTGACTCGAAGTAAGAAAGA 58.061 34.615 16.43 0.00 32.49 2.52
398 399 8.576936 AACTTAACTGACTCGAAGTAAGAAAG 57.423 34.615 6.43 9.96 33.42 2.62
399 400 9.674824 CTAACTTAACTGACTCGAAGTAAGAAA 57.325 33.333 6.43 1.52 30.89 2.52
429 430 1.078709 CTGACGCACACCCATACTTG 58.921 55.000 0.00 0.00 0.00 3.16
513 514 3.173599 CAAATGCTTTACGCTGATGTGG 58.826 45.455 0.00 0.00 40.11 4.17
515 516 2.728846 CGCAAATGCTTTACGCTGATGT 60.729 45.455 3.63 0.00 40.11 3.06
521 522 0.109964 TCCACGCAAATGCTTTACGC 60.110 50.000 3.63 3.04 39.32 4.42
523 524 3.282831 ACTTCCACGCAAATGCTTTAC 57.717 42.857 3.63 0.00 39.32 2.01
524 525 4.941263 AGATACTTCCACGCAAATGCTTTA 59.059 37.500 3.63 0.00 39.32 1.85
525 526 3.758554 AGATACTTCCACGCAAATGCTTT 59.241 39.130 3.63 0.00 39.32 3.51
527 528 2.991250 AGATACTTCCACGCAAATGCT 58.009 42.857 3.63 0.00 39.32 3.79
528 529 3.764885 AAGATACTTCCACGCAAATGC 57.235 42.857 0.00 0.00 37.78 3.56
533 602 2.037902 TGTCCAAAGATACTTCCACGCA 59.962 45.455 0.00 0.00 0.00 5.24
536 605 4.223032 TCCTCTGTCCAAAGATACTTCCAC 59.777 45.833 0.00 0.00 0.00 4.02
554 623 1.827969 CCCAAAGTCTGACGATCCTCT 59.172 52.381 1.52 0.00 0.00 3.69
590 659 4.164413 AGCTAAAGGGTCCCAATCTAGTTC 59.836 45.833 11.55 0.00 0.00 3.01
615 695 2.724977 TCTTACACTCACAAGCCGAG 57.275 50.000 0.00 0.00 36.53 4.63
621 701 6.719370 AGCCCAATTAAATCTTACACTCACAA 59.281 34.615 0.00 0.00 0.00 3.33
654 734 6.907206 TTTGAAACATCAAGCCTTTTTCTG 57.093 33.333 2.16 0.00 0.00 3.02
682 762 6.895204 TCAGCCTATAAAGCCCAATTAAAACT 59.105 34.615 0.00 0.00 0.00 2.66
885 993 3.686726 GCGTGAGATTGAACAAGAAGGAT 59.313 43.478 0.00 0.00 0.00 3.24
888 996 2.160417 GGGCGTGAGATTGAACAAGAAG 59.840 50.000 0.00 0.00 0.00 2.85
889 997 2.151202 GGGCGTGAGATTGAACAAGAA 58.849 47.619 0.00 0.00 0.00 2.52
890 998 1.071542 TGGGCGTGAGATTGAACAAGA 59.928 47.619 0.00 0.00 0.00 3.02
900 1008 1.758514 GGAGAGGATGGGCGTGAGA 60.759 63.158 0.00 0.00 0.00 3.27
933 1047 2.050836 TTGGAGCCAACCGAAGCTGA 62.051 55.000 0.00 0.00 40.11 4.26
935 1049 1.302832 CTTGGAGCCAACCGAAGCT 60.303 57.895 0.00 0.00 43.55 3.74
948 1063 2.007049 GCGCTAGCTTAACTGCTTGGA 61.007 52.381 13.93 0.00 43.74 3.53
957 1072 1.209128 GCAATCTCGCGCTAGCTTAA 58.791 50.000 13.93 0.00 42.32 1.85
999 1114 1.975363 GACTGCAGCAAGGCTAAGCG 61.975 60.000 15.27 3.60 36.40 4.68
1287 1417 5.630121 TCCGATCCATATTAATTGTGGCTT 58.370 37.500 12.44 5.23 33.01 4.35
1295 1425 8.423906 AACTAGTCACTCCGATCCATATTAAT 57.576 34.615 0.00 0.00 0.00 1.40
1490 1627 1.888512 GCTTGCTTGTTTGATCCTGGA 59.111 47.619 0.00 0.00 0.00 3.86
1491 1628 1.614903 TGCTTGCTTGTTTGATCCTGG 59.385 47.619 0.00 0.00 0.00 4.45
1501 1641 2.266627 GCCTCTGCTGCTTGCTTGT 61.267 57.895 0.00 0.00 43.37 3.16
1563 1703 2.143594 GACTTGTCGAGTGGAGCGGT 62.144 60.000 0.00 0.00 39.19 5.68
1571 1711 0.168348 CGTCGATGGACTTGTCGAGT 59.832 55.000 6.29 0.00 46.22 4.18
1584 1724 2.740714 GCTTTTGAGCGGCGTCGAT 61.741 57.895 16.53 6.82 39.00 3.59
1610 1750 2.987547 TTCGACCGGCGTTCTCCT 60.988 61.111 16.00 0.00 41.80 3.69
1644 1784 2.187958 GGGGGTAGTAAAGGTACGGTT 58.812 52.381 0.00 0.00 35.20 4.44
1654 1794 0.327924 TCTCACGTCGGGGGTAGTAA 59.672 55.000 0.00 0.00 0.00 2.24
1721 1862 5.224888 GCGCATGAATGGAATGACAAATAT 58.775 37.500 0.30 0.00 0.00 1.28
1761 1904 2.328099 GGCTGCCTCTGGAAACACG 61.328 63.158 12.43 0.00 35.60 4.49
1780 1923 2.125106 GACGCCTTGCCGATCCTT 60.125 61.111 0.00 0.00 0.00 3.36
1972 2115 2.202676 GTCTCCAGCGCCTCTTCG 60.203 66.667 2.29 0.00 0.00 3.79
1989 2132 0.109226 GACGGACTTGAACCTCTCGG 60.109 60.000 0.00 0.00 0.00 4.63
2125 2268 1.485124 TGGCATTCTCGAGCTCCTTA 58.515 50.000 7.81 0.00 0.00 2.69
2376 2519 1.220477 GCTCTGACCAGCTTCTCCC 59.780 63.158 0.00 0.00 36.38 4.30
2407 2550 2.119611 TCGACCTTGAGCCCCTCA 59.880 61.111 0.00 0.00 38.87 3.86
2529 2672 2.084546 CCTCCTCGTTGGATTTGTTCC 58.915 52.381 0.85 0.00 45.16 3.62
2620 2763 1.812922 CGCTTCGCCTTCTGATGCT 60.813 57.895 0.00 0.00 35.15 3.79
2736 2879 4.022329 TCTCATTCAGTAGCTCGTGTTCAA 60.022 41.667 0.00 0.00 0.00 2.69
2759 2902 1.667830 CGACAACCTGCCGATGTGT 60.668 57.895 0.00 0.00 0.00 3.72
2777 2920 1.712977 CTCGCTGCCTTCTCATTGCC 61.713 60.000 0.00 0.00 0.00 4.52
3108 3251 9.193133 CAAGAATCAACTCGTACTTCTCTTTTA 57.807 33.333 0.00 0.00 0.00 1.52
3164 3307 1.202940 GGCTTCTGAACCCAACCTCTT 60.203 52.381 0.00 0.00 0.00 2.85
3189 3332 3.458189 GACACCCGATCATCCTGTAAAG 58.542 50.000 0.00 0.00 0.00 1.85
3229 3372 3.388676 CCTCTGATCTCCTGAGCATTTCT 59.611 47.826 0.00 0.00 38.00 2.52
3455 3598 2.106511 CCTCCTTCTCCTTGGTTGACAA 59.893 50.000 0.00 0.00 37.55 3.18
3545 3688 4.510571 GCATCCATCAATTTTGAGGCTTT 58.489 39.130 0.00 0.00 41.08 3.51
3715 3858 4.382254 GCATCCATCAATTTTGAGGCTTCA 60.382 41.667 0.00 0.00 41.08 3.02
3807 3950 1.377856 GCAAGCACCTCCTTCTCCC 60.378 63.158 0.00 0.00 0.00 4.30
4600 4743 1.077625 AGCTCCGTCTTCTCCCTGT 59.922 57.895 0.00 0.00 0.00 4.00
4627 4770 1.105759 GCATCAGAAGGCCACCCATC 61.106 60.000 5.01 0.00 0.00 3.51
4821 4969 9.965824 TCAAAAATTCAGAAGGAAAATAGTGAC 57.034 29.630 0.00 0.00 39.39 3.67
4988 5138 2.169769 CCGCCAAGGTACAGGAAGAATA 59.830 50.000 0.00 0.00 34.51 1.75
5113 5264 9.373450 AGATATTCTCATAGCTAAAGTCCAGAA 57.627 33.333 0.00 0.19 29.34 3.02
5193 5344 5.130350 TGAACCTCTTTTTCCTGTTACCTG 58.870 41.667 0.00 0.00 0.00 4.00
5199 5350 4.855340 TGAACTGAACCTCTTTTTCCTGT 58.145 39.130 0.00 0.00 0.00 4.00
5270 5421 1.065126 ACTGAGCCTCCCAGCATTTAC 60.065 52.381 0.00 0.00 35.14 2.01
5275 5426 0.031716 AGATACTGAGCCTCCCAGCA 60.032 55.000 0.00 0.00 35.14 4.41
5423 5574 6.062095 GGGCAGAAATCCATAAGCTAGTTAA 58.938 40.000 0.00 0.00 0.00 2.01
5527 5678 3.119495 GCAGCCAACAATAGTTTACCAGG 60.119 47.826 0.00 0.00 35.28 4.45
5580 5739 1.543208 GCACACTGACCTGTTGATCCA 60.543 52.381 0.00 0.00 0.00 3.41
5653 5812 1.151668 CGTGCACCTCCAAAAGAGAG 58.848 55.000 12.15 0.00 46.50 3.20
5748 5922 4.967084 TCTGGCACTAACCTGACTAAAA 57.033 40.909 0.00 0.00 33.20 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.