Multiple sequence alignment - TraesCS1D01G196700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G196700 chr1D 100.000 5450 0 0 1 5450 276536106 276530657 0.000000e+00 10065.0
1 TraesCS1D01G196700 chr1D 96.000 50 1 1 4779 4827 276531283 276531234 4.530000e-11 80.5
2 TraesCS1D01G196700 chr1D 96.000 50 1 1 4824 4873 276531328 276531280 4.530000e-11 80.5
3 TraesCS1D01G196700 chr1A 95.173 2424 69 15 649 3040 348721848 348719441 0.000000e+00 3784.0
4 TraesCS1D01G196700 chr1A 94.249 852 30 8 3989 4828 348718134 348717290 0.000000e+00 1284.0
5 TraesCS1D01G196700 chr1A 93.617 799 26 5 3198 3973 348719279 348718483 0.000000e+00 1170.0
6 TraesCS1D01G196700 chr1A 93.594 640 19 13 4824 5445 348717342 348716707 0.000000e+00 935.0
7 TraesCS1D01G196700 chr1B 94.306 2406 66 19 663 3040 375821685 375819323 0.000000e+00 3618.0
8 TraesCS1D01G196700 chr1B 93.677 1803 64 14 3038 4828 375819242 375817478 0.000000e+00 2652.0
9 TraesCS1D01G196700 chr1B 82.946 645 58 21 4831 5445 375817520 375816898 8.040000e-148 534.0
10 TraesCS1D01G196700 chr1B 92.000 50 4 0 461 510 170006857 170006808 2.720000e-08 71.3
11 TraesCS1D01G196700 chr6D 90.795 239 18 3 230 464 69960260 69960022 3.170000e-82 316.0
12 TraesCS1D01G196700 chr6D 87.500 136 13 4 38 170 322985680 322985546 2.630000e-33 154.0
13 TraesCS1D01G196700 chr6D 77.689 251 37 15 1 235 344205448 344205695 9.520000e-28 135.0
14 TraesCS1D01G196700 chr6D 88.312 77 8 1 37 113 35221158 35221233 2.090000e-14 91.6
15 TraesCS1D01G196700 chr6B 91.855 221 16 1 238 456 26081591 26081811 1.910000e-79 307.0
16 TraesCS1D01G196700 chr6B 91.818 220 16 1 239 456 15138989 15139208 6.860000e-79 305.0
17 TraesCS1D01G196700 chr4A 91.228 228 16 2 233 456 157584748 157584975 1.910000e-79 307.0
18 TraesCS1D01G196700 chr4A 94.400 125 7 0 1240 1364 611579928 611580052 5.570000e-45 193.0
19 TraesCS1D01G196700 chr7B 91.818 220 16 1 239 456 669827076 669827295 6.860000e-79 305.0
20 TraesCS1D01G196700 chr4B 91.818 220 16 1 238 455 647306409 647306628 6.860000e-79 305.0
21 TraesCS1D01G196700 chr4B 91.031 223 18 1 238 458 468005200 468004978 3.190000e-77 300.0
22 TraesCS1D01G196700 chr3B 91.818 220 16 1 239 456 816483357 816483138 6.860000e-79 305.0
23 TraesCS1D01G196700 chr3B 78.283 198 17 14 4530 4722 681956861 681956685 2.690000e-18 104.0
24 TraesCS1D01G196700 chr7A 91.480 223 16 2 235 455 725204800 725204579 2.470000e-78 303.0
25 TraesCS1D01G196700 chr7A 89.091 55 4 2 75 129 42501574 42501522 3.520000e-07 67.6
26 TraesCS1D01G196700 chr5D 94.400 125 7 0 1240 1364 558438652 558438776 5.570000e-45 193.0
27 TraesCS1D01G196700 chr5B 94.400 125 7 0 1240 1364 704243023 704242899 5.570000e-45 193.0
28 TraesCS1D01G196700 chr7D 83.028 218 25 9 31 240 88007016 88007229 2.590000e-43 187.0
29 TraesCS1D01G196700 chr7D 79.327 208 31 8 37 233 547407414 547407620 9.520000e-28 135.0
30 TraesCS1D01G196700 chr2B 97.561 41 1 0 460 500 55541756 55541796 2.720000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G196700 chr1D 276530657 276536106 5449 True 10065.00 10065 100.000000 1 5450 1 chr1D.!!$R1 5449
1 TraesCS1D01G196700 chr1A 348716707 348721848 5141 True 1793.25 3784 94.158250 649 5445 4 chr1A.!!$R1 4796
2 TraesCS1D01G196700 chr1B 375816898 375821685 4787 True 2268.00 3618 90.309667 663 5445 3 chr1B.!!$R2 4782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 503 0.032416 TCCCCAAACCGGAAAAACCA 60.032 50.0 9.46 0.0 38.90 3.67 F
576 577 0.106708 TAGAATGGGCCGCTAGCTTG 59.893 55.0 13.93 4.9 43.05 4.01 F
597 598 0.109272 TCGAGTCTGTGCGAATGGTC 60.109 55.0 0.00 0.0 33.04 4.02 F
930 943 0.192064 TCCTCCCATCCCCATCTCTC 59.808 60.0 0.00 0.0 0.00 3.20 F
2164 2202 0.179073 ATGGTGGAAAGATCGAGGCG 60.179 55.0 0.00 0.0 0.00 5.52 F
2528 2566 1.709578 AACTGAGGAGACAGCAGACA 58.290 50.0 0.00 0.0 41.06 3.41 F
4311 4835 0.244721 GCATGGCTGGTTTCCTTGAC 59.755 55.0 0.00 0.0 32.32 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1574 1607 0.106819 GCTGGCCTCATCCACATTCT 60.107 55.000 3.32 0.00 31.74 2.40 R
1659 1692 6.682113 GCATTCAACATTATGCATCTCCACTT 60.682 38.462 0.19 0.00 44.99 3.16 R
1933 1969 6.863126 AGTTCAAGAAATGCAGTAAATTTCCG 59.137 34.615 6.19 0.00 42.49 4.30 R
2528 2566 7.968405 GGCTCGTCATTGTATGAAAAGTAAAAT 59.032 33.333 0.00 0.00 41.69 1.82 R
3800 3989 1.949525 ATTGTCAGCAAAGACGCAGTT 59.050 42.857 0.00 0.00 38.68 3.16 R
4365 4889 1.077930 TCCAGCCATGCTCTTGAGC 60.078 57.895 15.01 15.01 36.40 4.26 R
5150 5698 1.142748 GCAGATGTCGGAGTCCAGG 59.857 63.158 10.49 0.00 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 9.869757 ATTACTTGAAAGTAGCAAACAAGTTTT 57.130 25.926 14.28 2.78 45.37 2.43
78 79 7.581011 ACTTGAAAGTAGCAAACAAGTTTTG 57.419 32.000 0.00 0.00 45.37 2.44
79 80 7.375053 ACTTGAAAGTAGCAAACAAGTTTTGA 58.625 30.769 0.00 0.00 45.37 2.69
80 81 7.870445 ACTTGAAAGTAGCAAACAAGTTTTGAA 59.130 29.630 0.00 0.00 45.37 2.69
81 82 8.594881 TTGAAAGTAGCAAACAAGTTTTGAAA 57.405 26.923 0.91 0.00 0.00 2.69
82 83 8.770438 TGAAAGTAGCAAACAAGTTTTGAAAT 57.230 26.923 0.91 0.00 0.00 2.17
83 84 8.655092 TGAAAGTAGCAAACAAGTTTTGAAATG 58.345 29.630 0.91 0.00 0.00 2.32
84 85 7.538303 AAGTAGCAAACAAGTTTTGAAATGG 57.462 32.000 0.91 0.00 0.00 3.16
85 86 6.872920 AGTAGCAAACAAGTTTTGAAATGGA 58.127 32.000 0.91 0.00 0.00 3.41
86 87 7.327214 AGTAGCAAACAAGTTTTGAAATGGAA 58.673 30.769 0.91 0.00 0.00 3.53
87 88 7.986889 AGTAGCAAACAAGTTTTGAAATGGAAT 59.013 29.630 0.91 0.00 0.00 3.01
88 89 7.628769 AGCAAACAAGTTTTGAAATGGAATT 57.371 28.000 0.91 0.00 38.98 2.17
89 90 8.729805 AGCAAACAAGTTTTGAAATGGAATTA 57.270 26.923 0.91 0.00 33.67 1.40
90 91 9.341078 AGCAAACAAGTTTTGAAATGGAATTAT 57.659 25.926 0.91 0.00 33.67 1.28
91 92 9.949174 GCAAACAAGTTTTGAAATGGAATTATT 57.051 25.926 0.91 0.00 33.67 1.40
131 132 5.873179 TTTTCTGAAGACGTTGTGAAAGT 57.127 34.783 0.00 0.00 0.00 2.66
132 133 5.873179 TTTCTGAAGACGTTGTGAAAGTT 57.127 34.783 0.00 0.00 0.00 2.66
133 134 4.857871 TCTGAAGACGTTGTGAAAGTTG 57.142 40.909 0.00 0.00 0.00 3.16
134 135 4.250464 TCTGAAGACGTTGTGAAAGTTGT 58.750 39.130 0.00 0.00 0.00 3.32
135 136 4.328983 TCTGAAGACGTTGTGAAAGTTGTC 59.671 41.667 0.00 0.00 0.00 3.18
136 137 3.997681 TGAAGACGTTGTGAAAGTTGTCA 59.002 39.130 0.00 0.00 0.00 3.58
137 138 4.452795 TGAAGACGTTGTGAAAGTTGTCAA 59.547 37.500 0.00 0.00 0.00 3.18
138 139 4.336532 AGACGTTGTGAAAGTTGTCAAC 57.663 40.909 7.68 7.68 37.42 3.18
139 140 3.749088 AGACGTTGTGAAAGTTGTCAACA 59.251 39.130 17.78 0.00 39.72 3.33
140 141 4.214545 AGACGTTGTGAAAGTTGTCAACAA 59.785 37.500 17.78 0.03 39.72 2.83
141 142 4.861210 ACGTTGTGAAAGTTGTCAACAAA 58.139 34.783 17.78 0.00 39.72 2.83
142 143 5.282510 ACGTTGTGAAAGTTGTCAACAAAA 58.717 33.333 17.78 0.00 39.72 2.44
143 144 5.749109 ACGTTGTGAAAGTTGTCAACAAAAA 59.251 32.000 17.78 0.00 39.72 1.94
144 145 6.062021 CGTTGTGAAAGTTGTCAACAAAAAC 58.938 36.000 17.78 10.60 39.72 2.43
145 146 6.291849 CGTTGTGAAAGTTGTCAACAAAAACA 60.292 34.615 17.78 12.77 39.72 2.83
146 147 7.568497 CGTTGTGAAAGTTGTCAACAAAAACAT 60.568 33.333 17.78 0.00 39.72 2.71
147 148 8.704234 GTTGTGAAAGTTGTCAACAAAAACATA 58.296 29.630 17.78 6.22 39.59 2.29
148 149 8.818141 TGTGAAAGTTGTCAACAAAAACATAA 57.182 26.923 17.78 2.14 37.63 1.90
149 150 9.261180 TGTGAAAGTTGTCAACAAAAACATAAA 57.739 25.926 17.78 0.21 37.63 1.40
150 151 9.739786 GTGAAAGTTGTCAACAAAAACATAAAG 57.260 29.630 17.78 0.00 37.63 1.85
151 152 9.482627 TGAAAGTTGTCAACAAAAACATAAAGT 57.517 25.926 17.78 0.00 37.63 2.66
248 249 3.921257 AAAAACCGTACTCCCTCCG 57.079 52.632 0.00 0.00 0.00 4.63
249 250 1.051008 AAAAACCGTACTCCCTCCGT 58.949 50.000 0.00 0.00 0.00 4.69
250 251 0.605083 AAAACCGTACTCCCTCCGTC 59.395 55.000 0.00 0.00 0.00 4.79
251 252 1.253593 AAACCGTACTCCCTCCGTCC 61.254 60.000 0.00 0.00 0.00 4.79
252 253 2.832201 CCGTACTCCCTCCGTCCC 60.832 72.222 0.00 0.00 0.00 4.46
253 254 3.207669 CGTACTCCCTCCGTCCCG 61.208 72.222 0.00 0.00 0.00 5.14
264 265 3.953201 CCGTCCCGGTGTATAAGTC 57.047 57.895 0.00 0.00 42.73 3.01
265 266 1.105457 CCGTCCCGGTGTATAAGTCA 58.895 55.000 0.00 0.00 42.73 3.41
266 267 1.684983 CCGTCCCGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 42.73 3.06
267 268 2.101917 CCGTCCCGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 42.73 2.57
268 269 3.431207 CCGTCCCGGTGTATAAGTCATTT 60.431 47.826 0.00 0.00 42.73 2.32
269 270 3.554324 CGTCCCGGTGTATAAGTCATTTG 59.446 47.826 0.00 0.00 0.00 2.32
270 271 3.311596 GTCCCGGTGTATAAGTCATTTGC 59.688 47.826 0.00 0.00 0.00 3.68
271 272 2.286833 CCCGGTGTATAAGTCATTTGCG 59.713 50.000 0.00 0.00 0.00 4.85
272 273 2.933906 CCGGTGTATAAGTCATTTGCGT 59.066 45.455 0.00 0.00 0.00 5.24
273 274 4.114073 CCGGTGTATAAGTCATTTGCGTA 58.886 43.478 0.00 0.00 0.00 4.42
274 275 4.208460 CCGGTGTATAAGTCATTTGCGTAG 59.792 45.833 0.00 0.00 0.00 3.51
275 276 4.802039 CGGTGTATAAGTCATTTGCGTAGT 59.198 41.667 0.00 0.00 0.00 2.73
276 277 5.290158 CGGTGTATAAGTCATTTGCGTAGTT 59.710 40.000 0.00 0.00 0.00 2.24
277 278 6.183360 CGGTGTATAAGTCATTTGCGTAGTTT 60.183 38.462 0.00 0.00 0.00 2.66
278 279 7.524065 GGTGTATAAGTCATTTGCGTAGTTTT 58.476 34.615 0.00 0.00 0.00 2.43
279 280 8.658609 GGTGTATAAGTCATTTGCGTAGTTTTA 58.341 33.333 0.00 0.00 0.00 1.52
280 281 9.685005 GTGTATAAGTCATTTGCGTAGTTTTAG 57.315 33.333 0.00 0.00 0.00 1.85
281 282 8.875803 TGTATAAGTCATTTGCGTAGTTTTAGG 58.124 33.333 0.00 0.00 0.00 2.69
282 283 4.680171 AGTCATTTGCGTAGTTTTAGGC 57.320 40.909 0.00 0.00 40.26 3.93
283 284 3.439129 AGTCATTTGCGTAGTTTTAGGCC 59.561 43.478 0.00 0.00 39.36 5.19
284 285 3.189702 GTCATTTGCGTAGTTTTAGGCCA 59.810 43.478 5.01 0.00 39.36 5.36
285 286 4.013728 TCATTTGCGTAGTTTTAGGCCAT 58.986 39.130 5.01 0.00 39.36 4.40
286 287 4.095782 TCATTTGCGTAGTTTTAGGCCATC 59.904 41.667 5.01 0.00 39.36 3.51
287 288 1.647346 TGCGTAGTTTTAGGCCATCG 58.353 50.000 5.01 0.00 39.36 3.84
288 289 1.205179 TGCGTAGTTTTAGGCCATCGA 59.795 47.619 5.01 0.00 39.36 3.59
289 290 2.159014 TGCGTAGTTTTAGGCCATCGAT 60.159 45.455 5.01 0.00 39.36 3.59
290 291 2.870411 GCGTAGTTTTAGGCCATCGATT 59.130 45.455 5.01 0.00 35.23 3.34
291 292 3.311596 GCGTAGTTTTAGGCCATCGATTT 59.688 43.478 5.01 0.00 35.23 2.17
292 293 4.785341 GCGTAGTTTTAGGCCATCGATTTG 60.785 45.833 5.01 0.00 35.23 2.32
293 294 4.569162 CGTAGTTTTAGGCCATCGATTTGA 59.431 41.667 5.01 0.00 0.00 2.69
294 295 5.236478 CGTAGTTTTAGGCCATCGATTTGAT 59.764 40.000 5.01 0.00 38.01 2.57
310 311 9.970395 ATCGATTTGATGCATTAAATATGTGTT 57.030 25.926 24.54 6.55 35.45 3.32
349 350 9.570468 AAGTATATCACTAGATTTCTACACGGA 57.430 33.333 0.00 0.00 36.04 4.69
350 351 9.742144 AGTATATCACTAGATTTCTACACGGAT 57.258 33.333 0.00 0.00 34.98 4.18
351 352 9.776158 GTATATCACTAGATTTCTACACGGATG 57.224 37.037 0.00 0.00 35.67 3.51
352 353 6.716934 ATCACTAGATTTCTACACGGATGT 57.283 37.500 0.00 0.00 43.30 3.06
353 354 7.818997 ATCACTAGATTTCTACACGGATGTA 57.181 36.000 0.00 0.00 40.48 2.29
354 355 9.000486 TATCACTAGATTTCTACACGGATGTAG 58.000 37.037 7.95 7.95 45.22 2.74
428 429 9.864034 AATTATTGATCTAAAACTACGCGAATG 57.136 29.630 15.93 4.47 0.00 2.67
429 430 8.637281 TTATTGATCTAAAACTACGCGAATGA 57.363 30.769 15.93 0.00 0.00 2.57
430 431 5.944049 TGATCTAAAACTACGCGAATGAC 57.056 39.130 15.93 0.00 0.00 3.06
431 432 5.647589 TGATCTAAAACTACGCGAATGACT 58.352 37.500 15.93 0.00 0.00 3.41
432 433 6.097356 TGATCTAAAACTACGCGAATGACTT 58.903 36.000 15.93 0.94 0.00 3.01
433 434 7.252708 TGATCTAAAACTACGCGAATGACTTA 58.747 34.615 15.93 2.18 0.00 2.24
434 435 7.919091 TGATCTAAAACTACGCGAATGACTTAT 59.081 33.333 15.93 0.00 0.00 1.73
435 436 9.390795 GATCTAAAACTACGCGAATGACTTATA 57.609 33.333 15.93 0.00 0.00 0.98
436 437 8.552469 TCTAAAACTACGCGAATGACTTATAC 57.448 34.615 15.93 0.00 0.00 1.47
437 438 8.183536 TCTAAAACTACGCGAATGACTTATACA 58.816 33.333 15.93 0.00 0.00 2.29
438 439 6.564854 AAACTACGCGAATGACTTATACAC 57.435 37.500 15.93 0.00 0.00 2.90
439 440 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
440 441 2.456989 ACGCGAATGACTTATACACCG 58.543 47.619 15.93 0.00 0.00 4.94
441 442 2.097954 ACGCGAATGACTTATACACCGA 59.902 45.455 15.93 0.00 0.00 4.69
442 443 2.719556 CGCGAATGACTTATACACCGAG 59.280 50.000 0.00 0.00 0.00 4.63
443 444 3.547413 CGCGAATGACTTATACACCGAGA 60.547 47.826 0.00 0.00 0.00 4.04
444 445 3.729716 GCGAATGACTTATACACCGAGAC 59.270 47.826 0.00 0.00 0.00 3.36
445 446 3.966844 CGAATGACTTATACACCGAGACG 59.033 47.826 0.00 0.00 0.00 4.18
446 447 4.260497 CGAATGACTTATACACCGAGACGA 60.260 45.833 0.00 0.00 0.00 4.20
447 448 5.571784 AATGACTTATACACCGAGACGAA 57.428 39.130 0.00 0.00 0.00 3.85
448 449 4.611310 TGACTTATACACCGAGACGAAG 57.389 45.455 0.00 0.00 0.00 3.79
449 450 3.376234 TGACTTATACACCGAGACGAAGG 59.624 47.826 0.00 0.00 0.00 3.46
450 451 3.350833 ACTTATACACCGAGACGAAGGT 58.649 45.455 0.00 0.00 42.34 3.50
451 452 4.517285 ACTTATACACCGAGACGAAGGTA 58.483 43.478 0.00 0.00 39.00 3.08
452 453 4.574013 ACTTATACACCGAGACGAAGGTAG 59.426 45.833 0.00 0.00 39.00 3.18
453 454 2.479566 TACACCGAGACGAAGGTAGT 57.520 50.000 0.00 0.00 39.00 2.73
454 455 2.479566 ACACCGAGACGAAGGTAGTA 57.520 50.000 0.00 0.00 39.00 1.82
455 456 2.354259 ACACCGAGACGAAGGTAGTAG 58.646 52.381 0.00 0.00 39.00 2.57
456 457 2.027745 ACACCGAGACGAAGGTAGTAGA 60.028 50.000 0.00 0.00 39.00 2.59
457 458 3.005554 CACCGAGACGAAGGTAGTAGAA 58.994 50.000 0.00 0.00 39.00 2.10
458 459 3.438087 CACCGAGACGAAGGTAGTAGAAA 59.562 47.826 0.00 0.00 39.00 2.52
459 460 3.438434 ACCGAGACGAAGGTAGTAGAAAC 59.562 47.826 0.00 0.00 39.30 2.78
460 461 3.484886 CCGAGACGAAGGTAGTAGAAACG 60.485 52.174 0.00 0.00 0.00 3.60
461 462 3.484886 CGAGACGAAGGTAGTAGAAACGG 60.485 52.174 0.00 0.00 0.00 4.44
462 463 3.416156 AGACGAAGGTAGTAGAAACGGT 58.584 45.455 0.00 0.00 0.00 4.83
463 464 3.823304 AGACGAAGGTAGTAGAAACGGTT 59.177 43.478 0.00 0.00 0.00 4.44
464 465 4.083057 AGACGAAGGTAGTAGAAACGGTTC 60.083 45.833 4.63 4.63 0.00 3.62
465 466 3.569701 ACGAAGGTAGTAGAAACGGTTCA 59.430 43.478 16.95 0.00 36.09 3.18
466 467 4.164294 CGAAGGTAGTAGAAACGGTTCAG 58.836 47.826 16.95 0.00 36.09 3.02
467 468 4.492611 GAAGGTAGTAGAAACGGTTCAGG 58.507 47.826 16.95 0.00 36.09 3.86
468 469 3.771216 AGGTAGTAGAAACGGTTCAGGA 58.229 45.455 16.95 0.00 36.09 3.86
469 470 3.762823 AGGTAGTAGAAACGGTTCAGGAG 59.237 47.826 16.95 0.00 36.09 3.69
470 471 2.745515 AGTAGAAACGGTTCAGGAGC 57.254 50.000 16.95 0.34 36.09 4.70
471 472 1.275573 AGTAGAAACGGTTCAGGAGCC 59.724 52.381 16.95 0.00 36.09 4.70
472 473 1.275573 GTAGAAACGGTTCAGGAGCCT 59.724 52.381 16.95 0.00 36.09 4.58
473 474 0.765510 AGAAACGGTTCAGGAGCCTT 59.234 50.000 16.95 0.00 36.09 4.35
474 475 1.157585 GAAACGGTTCAGGAGCCTTC 58.842 55.000 8.70 0.00 33.61 3.46
475 476 0.765510 AAACGGTTCAGGAGCCTTCT 59.234 50.000 0.00 0.00 0.00 2.85
476 477 1.640917 AACGGTTCAGGAGCCTTCTA 58.359 50.000 0.66 0.00 0.00 2.10
477 478 1.187087 ACGGTTCAGGAGCCTTCTAG 58.813 55.000 0.66 0.00 0.00 2.43
478 479 1.272536 ACGGTTCAGGAGCCTTCTAGA 60.273 52.381 0.66 0.00 0.00 2.43
479 480 1.825474 CGGTTCAGGAGCCTTCTAGAA 59.175 52.381 4.81 4.81 0.00 2.10
480 481 2.432510 CGGTTCAGGAGCCTTCTAGAAT 59.567 50.000 5.44 0.00 0.00 2.40
481 482 3.739519 CGGTTCAGGAGCCTTCTAGAATG 60.740 52.174 5.44 4.39 0.00 2.67
482 483 3.198853 GGTTCAGGAGCCTTCTAGAATGT 59.801 47.826 5.44 0.00 0.00 2.71
483 484 4.323868 GGTTCAGGAGCCTTCTAGAATGTT 60.324 45.833 5.44 0.73 0.00 2.71
484 485 4.744795 TCAGGAGCCTTCTAGAATGTTC 57.255 45.455 13.74 13.74 0.00 3.18
485 486 3.452627 TCAGGAGCCTTCTAGAATGTTCC 59.547 47.826 25.99 25.99 36.87 3.62
486 487 2.774809 AGGAGCCTTCTAGAATGTTCCC 59.225 50.000 28.09 17.45 37.15 3.97
487 488 2.158740 GGAGCCTTCTAGAATGTTCCCC 60.159 54.545 24.13 8.73 32.85 4.81
488 489 2.505819 GAGCCTTCTAGAATGTTCCCCA 59.494 50.000 5.44 0.00 0.00 4.96
489 490 2.919602 AGCCTTCTAGAATGTTCCCCAA 59.080 45.455 5.44 0.00 0.00 4.12
490 491 3.333680 AGCCTTCTAGAATGTTCCCCAAA 59.666 43.478 5.44 0.00 0.00 3.28
491 492 3.444034 GCCTTCTAGAATGTTCCCCAAAC 59.556 47.826 5.44 0.00 38.43 2.93
492 493 4.017126 CCTTCTAGAATGTTCCCCAAACC 58.983 47.826 5.44 0.00 37.03 3.27
493 494 3.343941 TCTAGAATGTTCCCCAAACCG 57.656 47.619 0.00 0.00 37.03 4.44
494 495 2.026636 TCTAGAATGTTCCCCAAACCGG 60.027 50.000 0.00 0.00 37.03 5.28
495 496 0.774908 AGAATGTTCCCCAAACCGGA 59.225 50.000 9.46 0.00 37.03 5.14
496 497 1.146152 AGAATGTTCCCCAAACCGGAA 59.854 47.619 9.46 0.00 37.03 4.30
497 498 1.964933 GAATGTTCCCCAAACCGGAAA 59.035 47.619 9.46 0.00 41.03 3.13
498 499 2.089600 ATGTTCCCCAAACCGGAAAA 57.910 45.000 9.46 0.00 41.03 2.29
499 500 1.861982 TGTTCCCCAAACCGGAAAAA 58.138 45.000 9.46 0.00 41.03 1.94
500 501 1.481363 TGTTCCCCAAACCGGAAAAAC 59.519 47.619 9.46 3.14 41.03 2.43
501 502 1.121378 TTCCCCAAACCGGAAAAACC 58.879 50.000 9.46 0.00 36.44 3.27
502 503 0.032416 TCCCCAAACCGGAAAAACCA 60.032 50.000 9.46 0.00 38.90 3.67
503 504 0.391228 CCCCAAACCGGAAAAACCAG 59.609 55.000 9.46 0.00 38.90 4.00
504 505 0.391228 CCCAAACCGGAAAAACCAGG 59.609 55.000 9.46 0.00 38.90 4.45
505 506 1.116308 CCAAACCGGAAAAACCAGGT 58.884 50.000 9.46 0.00 43.48 4.00
507 508 2.545731 CAAACCGGAAAAACCAGGTTG 58.454 47.619 9.46 0.00 46.44 3.77
508 509 1.116308 AACCGGAAAAACCAGGTTGG 58.884 50.000 9.46 4.76 45.89 3.77
509 510 0.259356 ACCGGAAAAACCAGGTTGGA 59.741 50.000 9.46 0.00 40.96 3.53
510 511 0.958822 CCGGAAAAACCAGGTTGGAG 59.041 55.000 5.30 0.00 40.96 3.86
511 512 0.313987 CGGAAAAACCAGGTTGGAGC 59.686 55.000 5.30 0.00 40.96 4.70
512 513 1.704641 GGAAAAACCAGGTTGGAGCT 58.295 50.000 5.30 0.00 40.96 4.09
513 514 2.039418 GGAAAAACCAGGTTGGAGCTT 58.961 47.619 5.30 0.00 40.96 3.74
514 515 2.434336 GGAAAAACCAGGTTGGAGCTTT 59.566 45.455 5.30 1.81 40.96 3.51
515 516 3.492656 GGAAAAACCAGGTTGGAGCTTTC 60.493 47.826 5.30 11.27 40.96 2.62
516 517 2.452600 AAACCAGGTTGGAGCTTTCA 57.547 45.000 5.30 0.00 40.96 2.69
517 518 2.452600 AACCAGGTTGGAGCTTTCAA 57.547 45.000 3.18 0.00 40.96 2.69
518 519 1.986882 ACCAGGTTGGAGCTTTCAAG 58.013 50.000 1.40 0.00 40.96 3.02
519 520 1.251251 CCAGGTTGGAGCTTTCAAGG 58.749 55.000 4.04 0.10 40.96 3.61
520 521 1.202927 CCAGGTTGGAGCTTTCAAGGA 60.203 52.381 4.04 0.00 40.96 3.36
521 522 2.556114 CCAGGTTGGAGCTTTCAAGGAT 60.556 50.000 4.04 0.00 40.96 3.24
522 523 2.490903 CAGGTTGGAGCTTTCAAGGATG 59.509 50.000 4.04 1.38 0.00 3.51
523 524 2.108952 AGGTTGGAGCTTTCAAGGATGT 59.891 45.455 4.04 0.00 0.00 3.06
524 525 2.893489 GGTTGGAGCTTTCAAGGATGTT 59.107 45.455 4.04 0.00 0.00 2.71
525 526 3.057245 GGTTGGAGCTTTCAAGGATGTTC 60.057 47.826 4.04 0.00 0.00 3.18
526 527 2.795329 TGGAGCTTTCAAGGATGTTCC 58.205 47.619 0.00 0.00 36.58 3.62
536 537 1.938585 AGGATGTTCCTCAAGACGGA 58.061 50.000 0.00 0.00 45.66 4.69
537 538 2.472029 AGGATGTTCCTCAAGACGGAT 58.528 47.619 0.00 0.00 45.66 4.18
538 539 2.169352 AGGATGTTCCTCAAGACGGATG 59.831 50.000 0.00 0.00 45.66 3.51
539 540 1.936547 GATGTTCCTCAAGACGGATGC 59.063 52.381 0.00 0.00 0.00 3.91
540 541 0.389817 TGTTCCTCAAGACGGATGCG 60.390 55.000 4.58 4.58 0.00 4.73
541 542 0.389948 GTTCCTCAAGACGGATGCGT 60.390 55.000 13.64 13.64 0.00 5.24
542 543 0.389817 TTCCTCAAGACGGATGCGTG 60.390 55.000 19.71 2.64 0.00 5.34
543 544 1.079819 CCTCAAGACGGATGCGTGT 60.080 57.895 19.71 11.22 0.00 4.49
544 545 0.172578 CCTCAAGACGGATGCGTGTA 59.827 55.000 19.71 0.00 0.00 2.90
545 546 1.269166 CTCAAGACGGATGCGTGTAC 58.731 55.000 19.71 2.30 0.00 2.90
546 547 0.885879 TCAAGACGGATGCGTGTACT 59.114 50.000 19.71 5.13 0.00 2.73
547 548 1.135489 TCAAGACGGATGCGTGTACTC 60.135 52.381 19.71 1.42 0.00 2.59
548 549 0.179171 AAGACGGATGCGTGTACTCG 60.179 55.000 19.71 12.77 0.00 4.18
549 550 1.136147 GACGGATGCGTGTACTCGT 59.864 57.895 19.71 0.00 0.00 4.18
550 551 0.455633 GACGGATGCGTGTACTCGTT 60.456 55.000 19.71 6.87 0.00 3.85
551 552 0.804364 ACGGATGCGTGTACTCGTTA 59.196 50.000 12.84 8.65 0.00 3.18
552 553 1.202110 ACGGATGCGTGTACTCGTTAG 60.202 52.381 12.84 8.46 0.00 2.34
553 554 1.202110 CGGATGCGTGTACTCGTTAGT 60.202 52.381 17.63 3.06 39.91 2.24
554 555 2.730090 CGGATGCGTGTACTCGTTAGTT 60.730 50.000 17.63 0.38 37.15 2.24
555 556 3.248266 GGATGCGTGTACTCGTTAGTTT 58.752 45.455 17.63 0.00 37.15 2.66
556 557 3.302699 GGATGCGTGTACTCGTTAGTTTC 59.697 47.826 17.63 6.88 37.15 2.78
557 558 3.631145 TGCGTGTACTCGTTAGTTTCT 57.369 42.857 17.63 0.00 37.15 2.52
558 559 4.747540 TGCGTGTACTCGTTAGTTTCTA 57.252 40.909 17.63 0.00 37.15 2.10
559 560 4.715896 TGCGTGTACTCGTTAGTTTCTAG 58.284 43.478 17.63 0.00 37.15 2.43
560 561 4.452114 TGCGTGTACTCGTTAGTTTCTAGA 59.548 41.667 17.63 0.00 37.15 2.43
561 562 5.049474 TGCGTGTACTCGTTAGTTTCTAGAA 60.049 40.000 17.63 0.00 37.15 2.10
562 563 6.026513 GCGTGTACTCGTTAGTTTCTAGAAT 58.973 40.000 17.63 0.00 37.15 2.40
563 564 6.021626 GCGTGTACTCGTTAGTTTCTAGAATG 60.022 42.308 17.63 0.00 37.15 2.67
564 565 6.468319 CGTGTACTCGTTAGTTTCTAGAATGG 59.532 42.308 5.89 0.00 37.15 3.16
565 566 6.750963 GTGTACTCGTTAGTTTCTAGAATGGG 59.249 42.308 5.89 0.00 37.15 4.00
566 567 4.756502 ACTCGTTAGTTTCTAGAATGGGC 58.243 43.478 5.89 0.00 29.00 5.36
567 568 4.120589 CTCGTTAGTTTCTAGAATGGGCC 58.879 47.826 5.89 0.00 0.00 5.80
568 569 2.864343 CGTTAGTTTCTAGAATGGGCCG 59.136 50.000 5.89 3.28 0.00 6.13
569 570 2.612672 GTTAGTTTCTAGAATGGGCCGC 59.387 50.000 5.89 0.00 0.00 6.53
570 571 0.912486 AGTTTCTAGAATGGGCCGCT 59.088 50.000 5.89 0.00 0.00 5.52
571 572 2.116238 AGTTTCTAGAATGGGCCGCTA 58.884 47.619 5.89 0.00 0.00 4.26
572 573 2.103263 AGTTTCTAGAATGGGCCGCTAG 59.897 50.000 17.11 17.11 34.37 3.42
573 574 0.393077 TTCTAGAATGGGCCGCTAGC 59.607 55.000 17.96 4.06 42.60 3.42
574 575 0.470080 TCTAGAATGGGCCGCTAGCT 60.470 55.000 13.93 0.00 43.05 3.32
575 576 0.394565 CTAGAATGGGCCGCTAGCTT 59.605 55.000 13.93 0.00 43.05 3.74
576 577 0.106708 TAGAATGGGCCGCTAGCTTG 59.893 55.000 13.93 4.90 43.05 4.01
577 578 1.153168 GAATGGGCCGCTAGCTTGA 60.153 57.895 13.93 0.00 43.05 3.02
578 579 0.536006 GAATGGGCCGCTAGCTTGAT 60.536 55.000 13.93 0.00 43.05 2.57
579 580 0.536006 AATGGGCCGCTAGCTTGATC 60.536 55.000 13.93 0.00 43.05 2.92
580 581 2.663188 GGGCCGCTAGCTTGATCG 60.663 66.667 13.93 0.00 43.05 3.69
581 582 2.417516 GGCCGCTAGCTTGATCGA 59.582 61.111 13.93 0.00 43.05 3.59
582 583 1.663074 GGCCGCTAGCTTGATCGAG 60.663 63.158 13.93 5.50 43.05 4.04
583 584 1.066587 GCCGCTAGCTTGATCGAGT 59.933 57.895 13.93 1.64 38.99 4.18
584 585 0.937231 GCCGCTAGCTTGATCGAGTC 60.937 60.000 13.93 4.31 38.99 3.36
585 586 0.665835 CCGCTAGCTTGATCGAGTCT 59.334 55.000 13.93 11.03 0.00 3.24
586 587 1.599171 CCGCTAGCTTGATCGAGTCTG 60.599 57.143 13.93 3.39 0.00 3.51
587 588 1.064803 CGCTAGCTTGATCGAGTCTGT 59.935 52.381 13.93 0.00 0.00 3.41
588 589 2.458951 GCTAGCTTGATCGAGTCTGTG 58.541 52.381 7.70 7.86 0.00 3.66
589 590 2.458951 CTAGCTTGATCGAGTCTGTGC 58.541 52.381 11.71 0.00 0.00 4.57
590 591 0.457509 AGCTTGATCGAGTCTGTGCG 60.458 55.000 11.71 0.00 0.00 5.34
591 592 0.456824 GCTTGATCGAGTCTGTGCGA 60.457 55.000 11.71 0.00 41.14 5.10
592 593 1.982612 CTTGATCGAGTCTGTGCGAA 58.017 50.000 1.30 0.00 40.20 4.70
593 594 2.534298 CTTGATCGAGTCTGTGCGAAT 58.466 47.619 1.30 0.00 40.20 3.34
594 595 1.913317 TGATCGAGTCTGTGCGAATG 58.087 50.000 0.00 0.00 40.20 2.67
595 596 1.203928 GATCGAGTCTGTGCGAATGG 58.796 55.000 0.00 0.00 40.20 3.16
596 597 0.532573 ATCGAGTCTGTGCGAATGGT 59.467 50.000 0.00 0.00 40.20 3.55
597 598 0.109272 TCGAGTCTGTGCGAATGGTC 60.109 55.000 0.00 0.00 33.04 4.02
610 611 2.541556 GAATGGTCGACTACTTGAGGC 58.458 52.381 16.46 0.00 0.00 4.70
616 617 3.723554 GACTACTTGAGGCGGAGTG 57.276 57.895 1.58 0.00 0.00 3.51
617 618 0.458716 GACTACTTGAGGCGGAGTGC 60.459 60.000 1.58 0.00 45.38 4.40
627 628 2.006772 GCGGAGTGCGTCAAATAGG 58.993 57.895 5.77 0.00 0.00 2.57
628 629 0.459585 GCGGAGTGCGTCAAATAGGA 60.460 55.000 5.77 0.00 0.00 2.94
629 630 2.004583 CGGAGTGCGTCAAATAGGAA 57.995 50.000 0.00 0.00 0.00 3.36
630 631 2.343101 CGGAGTGCGTCAAATAGGAAA 58.657 47.619 0.00 0.00 0.00 3.13
631 632 2.739913 CGGAGTGCGTCAAATAGGAAAA 59.260 45.455 0.00 0.00 0.00 2.29
632 633 3.181520 CGGAGTGCGTCAAATAGGAAAAG 60.182 47.826 0.00 0.00 0.00 2.27
633 634 3.426292 GGAGTGCGTCAAATAGGAAAAGC 60.426 47.826 0.00 0.00 0.00 3.51
634 635 2.159627 AGTGCGTCAAATAGGAAAAGCG 59.840 45.455 0.00 0.00 0.00 4.68
635 636 2.095919 GTGCGTCAAATAGGAAAAGCGT 60.096 45.455 0.00 0.00 0.00 5.07
636 637 2.158841 TGCGTCAAATAGGAAAAGCGTC 59.841 45.455 0.00 0.00 0.00 5.19
637 638 2.415512 GCGTCAAATAGGAAAAGCGTCT 59.584 45.455 0.00 0.00 0.00 4.18
638 639 3.725010 GCGTCAAATAGGAAAAGCGTCTG 60.725 47.826 0.00 0.00 0.00 3.51
639 640 3.678072 CGTCAAATAGGAAAAGCGTCTGA 59.322 43.478 0.00 0.00 0.00 3.27
640 641 4.151689 CGTCAAATAGGAAAAGCGTCTGAA 59.848 41.667 0.00 0.00 0.00 3.02
641 642 5.163854 CGTCAAATAGGAAAAGCGTCTGAAT 60.164 40.000 0.00 0.00 0.00 2.57
642 643 6.251549 GTCAAATAGGAAAAGCGTCTGAATC 58.748 40.000 0.00 0.00 0.00 2.52
643 644 5.354234 TCAAATAGGAAAAGCGTCTGAATCC 59.646 40.000 0.00 0.00 0.00 3.01
644 645 4.762289 ATAGGAAAAGCGTCTGAATCCT 57.238 40.909 0.00 0.00 40.30 3.24
645 646 5.871396 ATAGGAAAAGCGTCTGAATCCTA 57.129 39.130 2.14 2.14 42.12 2.94
646 647 3.863041 AGGAAAAGCGTCTGAATCCTAC 58.137 45.455 0.00 0.00 35.59 3.18
647 648 3.260884 AGGAAAAGCGTCTGAATCCTACA 59.739 43.478 0.00 0.00 35.59 2.74
660 661 2.857186 TCCTACATGAAGCTGCAACA 57.143 45.000 0.00 1.49 0.00 3.33
662 663 2.038952 TCCTACATGAAGCTGCAACAGT 59.961 45.455 0.00 0.22 33.43 3.55
714 715 0.905337 GGGCTCACTATCCCCGCTAT 60.905 60.000 0.00 0.00 36.50 2.97
742 743 1.876322 TGCGGGCCAAAATTTTCTTG 58.124 45.000 4.39 0.00 0.00 3.02
928 941 0.839853 CCTCCTCCCATCCCCATCTC 60.840 65.000 0.00 0.00 0.00 2.75
929 942 0.193069 CTCCTCCCATCCCCATCTCT 59.807 60.000 0.00 0.00 0.00 3.10
930 943 0.192064 TCCTCCCATCCCCATCTCTC 59.808 60.000 0.00 0.00 0.00 3.20
1197 1216 0.466124 CCTCGTTTCATCCCTCTCCC 59.534 60.000 0.00 0.00 0.00 4.30
1229 1248 3.244215 CCACCTTATGTGTCTGTCTGTGT 60.244 47.826 0.00 0.00 43.85 3.72
1508 1541 7.608376 TGAAAATTCGTCCATTGTGTATTCCTA 59.392 33.333 0.00 0.00 0.00 2.94
1509 1542 7.931578 AAATTCGTCCATTGTGTATTCCTAA 57.068 32.000 0.00 0.00 0.00 2.69
1535 1568 3.603532 CTGTCATGCCATGTGAAGTAGT 58.396 45.455 4.31 0.00 0.00 2.73
1538 1571 3.871594 GTCATGCCATGTGAAGTAGTACC 59.128 47.826 4.31 0.00 0.00 3.34
1547 1580 3.254166 TGTGAAGTAGTACCACCGAACTC 59.746 47.826 7.09 0.00 0.00 3.01
1659 1692 7.012327 GCAGTTTATTCTGGCATAGATTGTGTA 59.988 37.037 0.00 0.00 34.80 2.90
1860 1895 9.330063 GTGTGAATGGAATGTTTATCAGATAGA 57.670 33.333 0.00 0.00 0.00 1.98
1933 1969 6.924060 CCTAACACCTAGCATATTGTCACTAC 59.076 42.308 0.00 0.00 0.00 2.73
1961 1997 9.468532 GAAATTTACTGCATTTCTTGAACTTCT 57.531 29.630 3.07 0.00 37.56 2.85
2164 2202 0.179073 ATGGTGGAAAGATCGAGGCG 60.179 55.000 0.00 0.00 0.00 5.52
2256 2294 4.105377 AGAAGATGGCAATAATAGTGGGCT 59.895 41.667 0.00 0.00 0.00 5.19
2528 2566 1.709578 AACTGAGGAGACAGCAGACA 58.290 50.000 0.00 0.00 41.06 3.41
3117 3280 2.501723 GGTAGCCTCTGTCAATTCAGGA 59.498 50.000 0.00 0.00 36.25 3.86
3118 3281 2.777832 AGCCTCTGTCAATTCAGGAC 57.222 50.000 0.00 0.00 36.25 3.85
3119 3282 2.264455 AGCCTCTGTCAATTCAGGACT 58.736 47.619 0.00 0.00 36.26 3.85
3120 3283 2.235898 AGCCTCTGTCAATTCAGGACTC 59.764 50.000 0.00 0.00 36.26 3.36
3154 3317 9.974980 GAAGATTTACCATTAAACCAACTTTGA 57.025 29.630 0.00 0.00 29.77 2.69
3172 3336 4.380843 TTGACTCTTTGGGGAAGCATTA 57.619 40.909 0.00 0.00 35.24 1.90
3308 3474 7.324354 TGGTTCATGTTGATGTCTGATAATG 57.676 36.000 0.00 0.00 0.00 1.90
3468 3656 6.262049 TGCTGTAATTGTGCTTTAGTTCTGAA 59.738 34.615 0.00 0.00 0.00 3.02
3480 3668 5.947228 TTAGTTCTGAAATGGCTTGTCTG 57.053 39.130 0.00 0.00 0.00 3.51
3517 3705 5.873179 TCGTGATGGTTTCTTTATTCCAC 57.127 39.130 0.00 0.00 32.60 4.02
3546 3734 6.150809 TGCATAATGAAGCATTTGAGTGTGTA 59.849 34.615 0.00 0.00 35.54 2.90
3547 3735 6.690098 GCATAATGAAGCATTTGAGTGTGTAG 59.310 38.462 0.00 0.00 35.54 2.74
4037 4560 2.229784 CCTTCCAACTTTCCATCACAGC 59.770 50.000 0.00 0.00 0.00 4.40
4093 4616 8.454106 GTGAATAATCTGTTTTCAGTACTGCAT 58.546 33.333 18.45 0.00 46.98 3.96
4311 4835 0.244721 GCATGGCTGGTTTCCTTGAC 59.755 55.000 0.00 0.00 32.32 3.18
4319 4843 0.591659 GGTTTCCTTGACGGACTTGC 59.408 55.000 0.00 0.00 42.97 4.01
4365 4889 0.244994 CCACTCAGGACTTGACCTCG 59.755 60.000 0.00 0.00 41.22 4.63
4413 4937 3.181456 GGAAGAAGCTGACATCTATGGCT 60.181 47.826 0.00 0.00 36.54 4.75
4513 5039 1.860950 CCGATCCTGATTGTTACTGCG 59.139 52.381 0.00 0.00 0.00 5.18
4599 5128 8.768955 CGGTAGAGAAAGAATGAGGATTTTATG 58.231 37.037 0.00 0.00 0.00 1.90
4602 5131 6.261826 AGAGAAAGAATGAGGATTTTATGGCG 59.738 38.462 0.00 0.00 0.00 5.69
4647 5176 1.981256 AGCATTTGGAGTTTCGTGGT 58.019 45.000 0.00 0.00 0.00 4.16
4732 5262 2.240493 ATGGTTATCAGTACAGGCGC 57.760 50.000 0.00 0.00 0.00 6.53
4733 5263 1.191535 TGGTTATCAGTACAGGCGCT 58.808 50.000 7.64 0.00 0.00 5.92
4735 5265 1.933853 GGTTATCAGTACAGGCGCTTG 59.066 52.381 19.01 19.01 0.00 4.01
4811 5346 5.894298 ATGCAACAGGGATGATAACTAGA 57.106 39.130 0.00 0.00 0.00 2.43
4812 5347 5.282055 TGCAACAGGGATGATAACTAGAG 57.718 43.478 0.00 0.00 0.00 2.43
4813 5348 4.716784 TGCAACAGGGATGATAACTAGAGT 59.283 41.667 0.00 0.00 0.00 3.24
4814 5349 5.897250 TGCAACAGGGATGATAACTAGAGTA 59.103 40.000 0.00 0.00 0.00 2.59
4815 5350 6.554982 TGCAACAGGGATGATAACTAGAGTAT 59.445 38.462 0.00 0.00 0.00 2.12
4816 5351 7.728532 TGCAACAGGGATGATAACTAGAGTATA 59.271 37.037 0.00 0.00 0.00 1.47
4817 5352 8.247562 GCAACAGGGATGATAACTAGAGTATAG 58.752 40.741 0.00 0.00 0.00 1.31
4818 5353 9.303116 CAACAGGGATGATAACTAGAGTATAGT 57.697 37.037 0.00 0.00 0.00 2.12
4819 5354 9.884814 AACAGGGATGATAACTAGAGTATAGTT 57.115 33.333 14.27 14.27 40.48 2.24
4820 5355 9.523168 ACAGGGATGATAACTAGAGTATAGTTC 57.477 37.037 13.29 1.91 38.55 3.01
4821 5356 9.521841 CAGGGATGATAACTAGAGTATAGTTCA 57.478 37.037 13.29 7.51 38.55 3.18
4822 5357 9.747898 AGGGATGATAACTAGAGTATAGTTCAG 57.252 37.037 13.29 0.00 38.55 3.02
4823 5358 8.463607 GGGATGATAACTAGAGTATAGTTCAGC 58.536 40.741 13.29 9.40 38.55 4.26
4824 5359 9.015367 GGATGATAACTAGAGTATAGTTCAGCA 57.985 37.037 13.29 10.44 38.55 4.41
4834 5369 8.950208 AGAGTATAGTTCAGCAAAGATAAACC 57.050 34.615 0.00 0.00 0.00 3.27
4835 5370 8.540388 AGAGTATAGTTCAGCAAAGATAAACCA 58.460 33.333 0.00 0.00 0.00 3.67
4836 5371 9.331282 GAGTATAGTTCAGCAAAGATAAACCAT 57.669 33.333 0.00 0.00 0.00 3.55
4837 5372 9.113838 AGTATAGTTCAGCAAAGATAAACCATG 57.886 33.333 0.00 0.00 0.00 3.66
4838 5373 5.064441 AGTTCAGCAAAGATAAACCATGC 57.936 39.130 0.00 0.00 37.28 4.06
4839 5374 4.523943 AGTTCAGCAAAGATAAACCATGCA 59.476 37.500 0.00 0.00 39.42 3.96
4840 5375 5.010922 AGTTCAGCAAAGATAAACCATGCAA 59.989 36.000 0.00 0.00 39.42 4.08
4841 5376 4.808558 TCAGCAAAGATAAACCATGCAAC 58.191 39.130 0.00 0.00 39.42 4.17
4842 5377 4.280425 TCAGCAAAGATAAACCATGCAACA 59.720 37.500 0.00 0.00 39.42 3.33
4843 5378 4.624024 CAGCAAAGATAAACCATGCAACAG 59.376 41.667 0.00 0.00 39.42 3.16
4844 5379 3.928375 GCAAAGATAAACCATGCAACAGG 59.072 43.478 0.00 0.00 37.00 4.00
4845 5380 4.497300 CAAAGATAAACCATGCAACAGGG 58.503 43.478 7.93 0.00 41.50 4.45
4846 5381 3.737559 AGATAAACCATGCAACAGGGA 57.262 42.857 5.13 0.00 37.52 4.20
4847 5382 4.255510 AGATAAACCATGCAACAGGGAT 57.744 40.909 5.13 0.00 37.52 3.85
4848 5383 3.956199 AGATAAACCATGCAACAGGGATG 59.044 43.478 5.13 0.00 44.27 3.51
4912 5447 5.971763 TGTTACAAGTGTCCAAAAATTGCT 58.028 33.333 0.00 0.00 0.00 3.91
5105 5653 0.667487 TTCTGCTTCTTCGCCGTCAG 60.667 55.000 0.00 0.00 0.00 3.51
5153 5701 2.271497 CTTCCCTGCTCTGGCCTG 59.729 66.667 3.32 2.92 37.74 4.85
5175 5723 4.794439 CCGACATCTGCACGCGGA 62.794 66.667 12.47 2.45 44.43 5.54
5255 5803 3.245048 GCACACAAAATTGCAGTGTTACC 59.755 43.478 5.98 0.00 43.40 2.85
5259 5807 2.632512 CAAAATTGCAGTGTTACCCCCT 59.367 45.455 0.00 0.00 0.00 4.79
5261 5809 2.694616 ATTGCAGTGTTACCCCCTTT 57.305 45.000 0.00 0.00 0.00 3.11
5308 5856 4.092968 GGACATTACACGTTTCATCAGTCC 59.907 45.833 0.00 0.00 35.57 3.85
5440 6008 3.486841 CGTGACAAAAACAGAAGCCAATG 59.513 43.478 0.00 0.00 0.00 2.82
5445 6013 4.875536 ACAAAAACAGAAGCCAATGAAACC 59.124 37.500 0.00 0.00 0.00 3.27
5446 6014 4.751767 AAAACAGAAGCCAATGAAACCA 57.248 36.364 0.00 0.00 0.00 3.67
5447 6015 4.961438 AAACAGAAGCCAATGAAACCAT 57.039 36.364 0.00 0.00 0.00 3.55
5448 6016 3.947910 ACAGAAGCCAATGAAACCATG 57.052 42.857 0.00 0.00 0.00 3.66
5449 6017 2.028748 ACAGAAGCCAATGAAACCATGC 60.029 45.455 0.00 0.00 0.00 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.869757 AAAACTTGTTTGCTACTTTCAAGTAAT 57.130 25.926 8.82 0.73 44.81 1.89
52 53 9.134734 CAAAACTTGTTTGCTACTTTCAAGTAA 57.865 29.630 8.82 0.00 44.81 2.24
53 54 8.516234 TCAAAACTTGTTTGCTACTTTCAAGTA 58.484 29.630 8.82 0.00 44.81 2.24
54 55 7.375053 TCAAAACTTGTTTGCTACTTTCAAGT 58.625 30.769 0.00 0.00 46.61 3.16
55 56 7.810766 TCAAAACTTGTTTGCTACTTTCAAG 57.189 32.000 0.00 0.00 40.54 3.02
56 57 8.594881 TTTCAAAACTTGTTTGCTACTTTCAA 57.405 26.923 0.00 0.00 0.00 2.69
57 58 8.655092 CATTTCAAAACTTGTTTGCTACTTTCA 58.345 29.630 0.00 0.00 0.00 2.69
58 59 8.116136 CCATTTCAAAACTTGTTTGCTACTTTC 58.884 33.333 0.00 0.00 0.00 2.62
59 60 7.821846 TCCATTTCAAAACTTGTTTGCTACTTT 59.178 29.630 0.00 0.00 0.00 2.66
60 61 7.327214 TCCATTTCAAAACTTGTTTGCTACTT 58.673 30.769 0.00 0.00 0.00 2.24
61 62 6.872920 TCCATTTCAAAACTTGTTTGCTACT 58.127 32.000 0.00 0.00 0.00 2.57
62 63 7.532682 TTCCATTTCAAAACTTGTTTGCTAC 57.467 32.000 0.00 0.00 0.00 3.58
63 64 8.729805 AATTCCATTTCAAAACTTGTTTGCTA 57.270 26.923 0.00 0.00 0.00 3.49
64 65 7.628769 AATTCCATTTCAAAACTTGTTTGCT 57.371 28.000 0.00 0.00 0.00 3.91
65 66 9.949174 AATAATTCCATTTCAAAACTTGTTTGC 57.051 25.926 0.00 0.00 0.00 3.68
108 109 6.249035 ACTTTCACAACGTCTTCAGAAAAA 57.751 33.333 0.00 0.00 0.00 1.94
109 110 5.873179 ACTTTCACAACGTCTTCAGAAAA 57.127 34.783 0.00 0.00 0.00 2.29
110 111 5.180492 ACAACTTTCACAACGTCTTCAGAAA 59.820 36.000 0.00 0.00 0.00 2.52
111 112 4.693566 ACAACTTTCACAACGTCTTCAGAA 59.306 37.500 0.00 0.00 0.00 3.02
112 113 4.250464 ACAACTTTCACAACGTCTTCAGA 58.750 39.130 0.00 0.00 0.00 3.27
113 114 4.092821 TGACAACTTTCACAACGTCTTCAG 59.907 41.667 0.00 0.00 0.00 3.02
114 115 3.997681 TGACAACTTTCACAACGTCTTCA 59.002 39.130 0.00 0.00 0.00 3.02
115 116 4.593597 TGACAACTTTCACAACGTCTTC 57.406 40.909 0.00 0.00 0.00 2.87
116 117 4.214545 TGTTGACAACTTTCACAACGTCTT 59.785 37.500 18.73 0.00 43.39 3.01
117 118 3.749088 TGTTGACAACTTTCACAACGTCT 59.251 39.130 18.73 0.00 43.39 4.18
118 119 4.073169 TGTTGACAACTTTCACAACGTC 57.927 40.909 18.73 0.00 43.39 4.34
119 120 4.491234 TTGTTGACAACTTTCACAACGT 57.509 36.364 18.73 0.00 43.39 3.99
120 121 5.814314 TTTTGTTGACAACTTTCACAACG 57.186 34.783 18.73 0.00 43.39 4.10
121 122 6.938542 TGTTTTTGTTGACAACTTTCACAAC 58.061 32.000 18.73 12.42 41.64 3.32
122 123 7.721286 ATGTTTTTGTTGACAACTTTCACAA 57.279 28.000 18.73 2.11 35.28 3.33
123 124 8.818141 TTATGTTTTTGTTGACAACTTTCACA 57.182 26.923 18.73 15.38 35.28 3.58
124 125 9.739786 CTTTATGTTTTTGTTGACAACTTTCAC 57.260 29.630 18.73 10.93 35.28 3.18
125 126 9.482627 ACTTTATGTTTTTGTTGACAACTTTCA 57.517 25.926 18.73 10.94 35.28 2.69
230 231 1.001293 GACGGAGGGAGTACGGTTTTT 59.999 52.381 0.00 0.00 0.00 1.94
231 232 0.605083 GACGGAGGGAGTACGGTTTT 59.395 55.000 0.00 0.00 0.00 2.43
232 233 1.253593 GGACGGAGGGAGTACGGTTT 61.254 60.000 0.00 0.00 0.00 3.27
233 234 1.680314 GGACGGAGGGAGTACGGTT 60.680 63.158 0.00 0.00 0.00 4.44
234 235 2.044551 GGACGGAGGGAGTACGGT 60.045 66.667 0.00 0.00 0.00 4.83
235 236 2.832201 GGGACGGAGGGAGTACGG 60.832 72.222 0.00 0.00 0.00 4.02
248 249 3.311596 GCAAATGACTTATACACCGGGAC 59.688 47.826 6.32 0.00 0.00 4.46
249 250 3.537580 GCAAATGACTTATACACCGGGA 58.462 45.455 6.32 0.00 0.00 5.14
250 251 2.286833 CGCAAATGACTTATACACCGGG 59.713 50.000 6.32 0.00 0.00 5.73
251 252 2.933906 ACGCAAATGACTTATACACCGG 59.066 45.455 0.00 0.00 0.00 5.28
252 253 4.802039 ACTACGCAAATGACTTATACACCG 59.198 41.667 0.00 0.00 0.00 4.94
253 254 6.657836 AACTACGCAAATGACTTATACACC 57.342 37.500 0.00 0.00 0.00 4.16
254 255 9.685005 CTAAAACTACGCAAATGACTTATACAC 57.315 33.333 0.00 0.00 0.00 2.90
255 256 8.875803 CCTAAAACTACGCAAATGACTTATACA 58.124 33.333 0.00 0.00 0.00 2.29
256 257 7.849515 GCCTAAAACTACGCAAATGACTTATAC 59.150 37.037 0.00 0.00 0.00 1.47
257 258 7.011669 GGCCTAAAACTACGCAAATGACTTATA 59.988 37.037 0.00 0.00 0.00 0.98
258 259 6.183360 GGCCTAAAACTACGCAAATGACTTAT 60.183 38.462 0.00 0.00 0.00 1.73
259 260 5.122711 GGCCTAAAACTACGCAAATGACTTA 59.877 40.000 0.00 0.00 0.00 2.24
260 261 4.082949 GGCCTAAAACTACGCAAATGACTT 60.083 41.667 0.00 0.00 0.00 3.01
261 262 3.439129 GGCCTAAAACTACGCAAATGACT 59.561 43.478 0.00 0.00 0.00 3.41
262 263 3.189702 TGGCCTAAAACTACGCAAATGAC 59.810 43.478 3.32 0.00 0.00 3.06
263 264 3.413327 TGGCCTAAAACTACGCAAATGA 58.587 40.909 3.32 0.00 0.00 2.57
264 265 3.840890 TGGCCTAAAACTACGCAAATG 57.159 42.857 3.32 0.00 0.00 2.32
265 266 3.064820 CGATGGCCTAAAACTACGCAAAT 59.935 43.478 3.32 0.00 0.00 2.32
266 267 2.417239 CGATGGCCTAAAACTACGCAAA 59.583 45.455 3.32 0.00 0.00 3.68
267 268 2.004017 CGATGGCCTAAAACTACGCAA 58.996 47.619 3.32 0.00 0.00 4.85
268 269 1.205179 TCGATGGCCTAAAACTACGCA 59.795 47.619 3.32 0.00 0.00 5.24
269 270 1.930567 TCGATGGCCTAAAACTACGC 58.069 50.000 3.32 0.00 0.00 4.42
270 271 4.569162 TCAAATCGATGGCCTAAAACTACG 59.431 41.667 3.32 0.00 0.00 3.51
271 272 6.430451 CATCAAATCGATGGCCTAAAACTAC 58.570 40.000 3.32 0.00 46.73 2.73
272 273 6.618287 CATCAAATCGATGGCCTAAAACTA 57.382 37.500 3.32 0.00 46.73 2.24
273 274 5.505173 CATCAAATCGATGGCCTAAAACT 57.495 39.130 3.32 0.00 46.73 2.66
284 285 9.970395 AACACATATTTAATGCATCAAATCGAT 57.030 25.926 11.18 0.00 33.27 3.59
323 324 9.570468 TCCGTGTAGAAATCTAGTGATATACTT 57.430 33.333 0.00 0.00 40.89 2.24
324 325 9.742144 ATCCGTGTAGAAATCTAGTGATATACT 57.258 33.333 0.00 0.00 43.56 2.12
325 326 9.776158 CATCCGTGTAGAAATCTAGTGATATAC 57.224 37.037 0.00 0.00 31.70 1.47
326 327 9.516546 ACATCCGTGTAGAAATCTAGTGATATA 57.483 33.333 0.00 0.00 36.63 0.86
327 328 8.410673 ACATCCGTGTAGAAATCTAGTGATAT 57.589 34.615 0.00 0.00 36.63 1.63
328 329 7.818997 ACATCCGTGTAGAAATCTAGTGATA 57.181 36.000 0.00 0.00 36.63 2.15
329 330 6.716934 ACATCCGTGTAGAAATCTAGTGAT 57.283 37.500 0.00 0.00 36.63 3.06
402 403 9.864034 CATTCGCGTAGTTTTAGATCAATAATT 57.136 29.630 5.77 0.00 0.00 1.40
403 404 9.256477 TCATTCGCGTAGTTTTAGATCAATAAT 57.744 29.630 5.77 0.00 0.00 1.28
404 405 8.537223 GTCATTCGCGTAGTTTTAGATCAATAA 58.463 33.333 5.77 0.00 0.00 1.40
405 406 7.919091 AGTCATTCGCGTAGTTTTAGATCAATA 59.081 33.333 5.77 0.00 0.00 1.90
406 407 6.757010 AGTCATTCGCGTAGTTTTAGATCAAT 59.243 34.615 5.77 0.00 0.00 2.57
407 408 6.097356 AGTCATTCGCGTAGTTTTAGATCAA 58.903 36.000 5.77 0.00 0.00 2.57
408 409 5.647589 AGTCATTCGCGTAGTTTTAGATCA 58.352 37.500 5.77 0.00 0.00 2.92
409 410 6.570690 AAGTCATTCGCGTAGTTTTAGATC 57.429 37.500 5.77 0.00 0.00 2.75
410 411 9.178427 GTATAAGTCATTCGCGTAGTTTTAGAT 57.822 33.333 5.77 0.00 0.00 1.98
411 412 8.183536 TGTATAAGTCATTCGCGTAGTTTTAGA 58.816 33.333 5.77 0.00 0.00 2.10
412 413 8.257841 GTGTATAAGTCATTCGCGTAGTTTTAG 58.742 37.037 5.77 0.00 0.00 1.85
413 414 7.220683 GGTGTATAAGTCATTCGCGTAGTTTTA 59.779 37.037 5.77 0.20 0.00 1.52
414 415 6.035327 GGTGTATAAGTCATTCGCGTAGTTTT 59.965 38.462 5.77 0.00 0.00 2.43
415 416 5.517770 GGTGTATAAGTCATTCGCGTAGTTT 59.482 40.000 5.77 0.00 0.00 2.66
416 417 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
417 418 4.604976 GGTGTATAAGTCATTCGCGTAGT 58.395 43.478 5.77 0.00 0.00 2.73
418 419 3.662645 CGGTGTATAAGTCATTCGCGTAG 59.337 47.826 5.77 0.00 0.00 3.51
419 420 3.312146 TCGGTGTATAAGTCATTCGCGTA 59.688 43.478 5.77 0.00 0.00 4.42
420 421 2.097954 TCGGTGTATAAGTCATTCGCGT 59.902 45.455 5.77 0.00 0.00 6.01
421 422 2.719556 CTCGGTGTATAAGTCATTCGCG 59.280 50.000 0.00 0.00 0.00 5.87
422 423 3.729716 GTCTCGGTGTATAAGTCATTCGC 59.270 47.826 0.00 0.00 0.00 4.70
423 424 3.966844 CGTCTCGGTGTATAAGTCATTCG 59.033 47.826 0.00 0.00 0.00 3.34
424 425 5.165911 TCGTCTCGGTGTATAAGTCATTC 57.834 43.478 0.00 0.00 0.00 2.67
425 426 5.450137 CCTTCGTCTCGGTGTATAAGTCATT 60.450 44.000 0.00 0.00 0.00 2.57
426 427 4.036498 CCTTCGTCTCGGTGTATAAGTCAT 59.964 45.833 0.00 0.00 0.00 3.06
427 428 3.376234 CCTTCGTCTCGGTGTATAAGTCA 59.624 47.826 0.00 0.00 0.00 3.41
428 429 3.376546 ACCTTCGTCTCGGTGTATAAGTC 59.623 47.826 0.00 0.00 30.90 3.01
429 430 3.350833 ACCTTCGTCTCGGTGTATAAGT 58.649 45.455 0.00 0.00 30.90 2.24
430 431 4.574013 ACTACCTTCGTCTCGGTGTATAAG 59.426 45.833 0.00 0.00 34.76 1.73
431 432 4.517285 ACTACCTTCGTCTCGGTGTATAA 58.483 43.478 0.00 0.00 34.76 0.98
432 433 4.142609 ACTACCTTCGTCTCGGTGTATA 57.857 45.455 0.00 0.00 34.76 1.47
433 434 2.996631 ACTACCTTCGTCTCGGTGTAT 58.003 47.619 0.00 0.00 34.76 2.29
434 435 2.479566 ACTACCTTCGTCTCGGTGTA 57.520 50.000 0.00 0.00 34.76 2.90
435 436 2.027745 TCTACTACCTTCGTCTCGGTGT 60.028 50.000 0.00 0.00 34.76 4.16
436 437 2.625737 TCTACTACCTTCGTCTCGGTG 58.374 52.381 0.00 0.00 34.76 4.94
437 438 3.340814 TTCTACTACCTTCGTCTCGGT 57.659 47.619 0.00 0.00 37.31 4.69
438 439 3.484886 CGTTTCTACTACCTTCGTCTCGG 60.485 52.174 0.00 0.00 0.00 4.63
439 440 3.484886 CCGTTTCTACTACCTTCGTCTCG 60.485 52.174 0.00 0.00 0.00 4.04
440 441 3.438434 ACCGTTTCTACTACCTTCGTCTC 59.562 47.826 0.00 0.00 0.00 3.36
441 442 3.416156 ACCGTTTCTACTACCTTCGTCT 58.584 45.455 0.00 0.00 0.00 4.18
442 443 3.839051 ACCGTTTCTACTACCTTCGTC 57.161 47.619 0.00 0.00 0.00 4.20
443 444 3.569701 TGAACCGTTTCTACTACCTTCGT 59.430 43.478 0.00 0.00 32.36 3.85
444 445 4.164294 CTGAACCGTTTCTACTACCTTCG 58.836 47.826 0.00 0.00 32.36 3.79
445 446 4.219288 TCCTGAACCGTTTCTACTACCTTC 59.781 45.833 0.00 0.00 32.36 3.46
446 447 4.154942 TCCTGAACCGTTTCTACTACCTT 58.845 43.478 0.00 0.00 32.36 3.50
447 448 3.762823 CTCCTGAACCGTTTCTACTACCT 59.237 47.826 0.00 0.00 32.36 3.08
448 449 3.675502 GCTCCTGAACCGTTTCTACTACC 60.676 52.174 0.00 0.00 32.36 3.18
449 450 3.509740 GCTCCTGAACCGTTTCTACTAC 58.490 50.000 0.00 0.00 32.36 2.73
450 451 2.494870 GGCTCCTGAACCGTTTCTACTA 59.505 50.000 0.00 0.00 32.36 1.82
451 452 1.275573 GGCTCCTGAACCGTTTCTACT 59.724 52.381 0.00 0.00 32.36 2.57
452 453 1.275573 AGGCTCCTGAACCGTTTCTAC 59.724 52.381 0.00 0.00 32.36 2.59
453 454 1.640917 AGGCTCCTGAACCGTTTCTA 58.359 50.000 0.00 0.00 32.36 2.10
454 455 0.765510 AAGGCTCCTGAACCGTTTCT 59.234 50.000 0.00 0.00 32.36 2.52
455 456 1.157585 GAAGGCTCCTGAACCGTTTC 58.842 55.000 0.00 0.00 0.00 2.78
456 457 0.765510 AGAAGGCTCCTGAACCGTTT 59.234 50.000 0.00 0.00 0.00 3.60
457 458 1.550976 CTAGAAGGCTCCTGAACCGTT 59.449 52.381 0.00 0.00 0.00 4.44
458 459 1.187087 CTAGAAGGCTCCTGAACCGT 58.813 55.000 0.00 0.00 0.00 4.83
459 460 1.475403 TCTAGAAGGCTCCTGAACCG 58.525 55.000 0.00 0.00 0.00 4.44
460 461 3.198853 ACATTCTAGAAGGCTCCTGAACC 59.801 47.826 16.73 0.00 0.00 3.62
461 462 4.479786 ACATTCTAGAAGGCTCCTGAAC 57.520 45.455 16.73 0.00 0.00 3.18
462 463 4.080863 GGAACATTCTAGAAGGCTCCTGAA 60.081 45.833 25.24 0.00 35.26 3.02
463 464 3.452627 GGAACATTCTAGAAGGCTCCTGA 59.547 47.826 25.24 0.00 35.26 3.86
464 465 3.432890 GGGAACATTCTAGAAGGCTCCTG 60.433 52.174 28.97 16.56 37.47 3.86
465 466 2.774809 GGGAACATTCTAGAAGGCTCCT 59.225 50.000 28.97 9.61 37.47 3.69
466 467 2.158740 GGGGAACATTCTAGAAGGCTCC 60.159 54.545 24.76 24.76 36.82 4.70
467 468 2.505819 TGGGGAACATTCTAGAAGGCTC 59.494 50.000 16.73 13.79 0.00 4.70
468 469 2.562296 TGGGGAACATTCTAGAAGGCT 58.438 47.619 16.73 4.78 0.00 4.58
469 470 3.366052 TTGGGGAACATTCTAGAAGGC 57.634 47.619 16.73 1.85 0.00 4.35
470 471 4.017126 GGTTTGGGGAACATTCTAGAAGG 58.983 47.826 15.32 15.32 40.13 3.46
471 472 3.689649 CGGTTTGGGGAACATTCTAGAAG 59.310 47.826 11.53 5.93 40.13 2.85
472 473 3.560453 CCGGTTTGGGGAACATTCTAGAA 60.560 47.826 7.82 7.82 40.13 2.10
473 474 2.026636 CCGGTTTGGGGAACATTCTAGA 60.027 50.000 0.00 0.00 40.13 2.43
474 475 2.026636 TCCGGTTTGGGGAACATTCTAG 60.027 50.000 0.00 0.00 40.13 2.43
475 476 1.986631 TCCGGTTTGGGGAACATTCTA 59.013 47.619 0.00 0.00 40.13 2.10
476 477 0.774908 TCCGGTTTGGGGAACATTCT 59.225 50.000 0.00 0.00 40.13 2.40
477 478 1.623163 TTCCGGTTTGGGGAACATTC 58.377 50.000 0.00 0.00 38.60 2.67
478 479 2.089600 TTTCCGGTTTGGGGAACATT 57.910 45.000 0.00 0.00 43.00 2.71
479 480 2.089600 TTTTCCGGTTTGGGGAACAT 57.910 45.000 0.00 0.00 43.00 2.71
480 481 1.481363 GTTTTTCCGGTTTGGGGAACA 59.519 47.619 0.00 0.00 43.00 3.18
481 482 1.202557 GGTTTTTCCGGTTTGGGGAAC 60.203 52.381 0.00 0.00 43.00 3.62
482 483 1.121378 GGTTTTTCCGGTTTGGGGAA 58.879 50.000 0.00 0.00 41.66 3.97
483 484 0.032416 TGGTTTTTCCGGTTTGGGGA 60.032 50.000 0.00 0.00 39.52 4.81
484 485 0.391228 CTGGTTTTTCCGGTTTGGGG 59.609 55.000 0.00 0.00 39.52 4.96
485 486 0.391228 CCTGGTTTTTCCGGTTTGGG 59.609 55.000 0.00 0.00 40.86 4.12
486 487 1.116308 ACCTGGTTTTTCCGGTTTGG 58.884 50.000 0.00 0.00 40.86 3.28
487 488 2.545731 CAACCTGGTTTTTCCGGTTTG 58.454 47.619 9.90 0.00 44.36 2.93
488 489 1.483004 CCAACCTGGTTTTTCCGGTTT 59.517 47.619 9.90 0.00 44.36 3.27
489 490 1.116308 CCAACCTGGTTTTTCCGGTT 58.884 50.000 9.90 7.10 46.09 4.44
490 491 0.259356 TCCAACCTGGTTTTTCCGGT 59.741 50.000 9.90 0.00 41.99 5.28
491 492 0.958822 CTCCAACCTGGTTTTTCCGG 59.041 55.000 9.90 7.94 39.03 5.14
492 493 0.313987 GCTCCAACCTGGTTTTTCCG 59.686 55.000 9.90 0.00 39.03 4.30
493 494 1.704641 AGCTCCAACCTGGTTTTTCC 58.295 50.000 9.90 0.00 39.03 3.13
494 495 3.132111 TGAAAGCTCCAACCTGGTTTTTC 59.868 43.478 19.55 19.55 39.03 2.29
495 496 3.103742 TGAAAGCTCCAACCTGGTTTTT 58.896 40.909 9.90 7.60 39.03 1.94
496 497 2.745968 TGAAAGCTCCAACCTGGTTTT 58.254 42.857 9.90 0.00 39.03 2.43
497 498 2.452600 TGAAAGCTCCAACCTGGTTT 57.547 45.000 9.90 0.00 39.03 3.27
498 499 2.310538 CTTGAAAGCTCCAACCTGGTT 58.689 47.619 6.18 6.18 39.03 3.67
499 500 1.479389 CCTTGAAAGCTCCAACCTGGT 60.479 52.381 0.00 0.00 39.03 4.00
500 501 1.202927 TCCTTGAAAGCTCCAACCTGG 60.203 52.381 0.00 0.00 39.43 4.45
501 502 2.276732 TCCTTGAAAGCTCCAACCTG 57.723 50.000 0.00 0.00 0.00 4.00
502 503 2.108952 ACATCCTTGAAAGCTCCAACCT 59.891 45.455 0.00 0.00 0.00 3.50
503 504 2.519013 ACATCCTTGAAAGCTCCAACC 58.481 47.619 0.00 0.00 0.00 3.77
504 505 3.057245 GGAACATCCTTGAAAGCTCCAAC 60.057 47.826 0.00 0.00 32.53 3.77
505 506 3.157087 GGAACATCCTTGAAAGCTCCAA 58.843 45.455 0.00 0.00 32.53 3.53
506 507 2.376518 AGGAACATCCTTGAAAGCTCCA 59.623 45.455 0.00 0.00 46.91 3.86
507 508 3.078891 AGGAACATCCTTGAAAGCTCC 57.921 47.619 0.00 0.00 46.91 4.70
518 519 2.555199 CATCCGTCTTGAGGAACATCC 58.445 52.381 0.00 0.00 41.69 3.51
519 520 1.936547 GCATCCGTCTTGAGGAACATC 59.063 52.381 0.00 0.00 41.69 3.06
520 521 1.740380 CGCATCCGTCTTGAGGAACAT 60.740 52.381 0.00 0.00 41.69 2.71
521 522 0.389817 CGCATCCGTCTTGAGGAACA 60.390 55.000 0.00 0.00 41.69 3.18
522 523 0.389948 ACGCATCCGTCTTGAGGAAC 60.390 55.000 0.00 0.00 46.39 3.62
523 524 0.389817 CACGCATCCGTCTTGAGGAA 60.390 55.000 0.00 0.00 46.39 3.36
524 525 1.215382 CACGCATCCGTCTTGAGGA 59.785 57.895 0.00 0.00 46.39 3.71
525 526 0.172578 TACACGCATCCGTCTTGAGG 59.827 55.000 0.00 0.00 46.39 3.86
526 527 1.135373 AGTACACGCATCCGTCTTGAG 60.135 52.381 0.00 0.00 46.39 3.02
527 528 0.885879 AGTACACGCATCCGTCTTGA 59.114 50.000 0.00 0.00 46.39 3.02
528 529 1.269166 GAGTACACGCATCCGTCTTG 58.731 55.000 0.00 0.00 46.39 3.02
529 530 0.179171 CGAGTACACGCATCCGTCTT 60.179 55.000 0.00 0.00 46.39 3.01
530 531 1.303799 ACGAGTACACGCATCCGTCT 61.304 55.000 12.79 0.00 46.39 4.18
531 532 0.455633 AACGAGTACACGCATCCGTC 60.456 55.000 12.79 0.00 46.39 4.79
532 533 3.764293 ACTAACGAGTACACGCATCCGT 61.764 50.000 12.79 0.93 40.78 4.69
533 534 1.202110 ACTAACGAGTACACGCATCCG 60.202 52.381 12.79 0.34 35.60 4.18
534 535 2.556534 ACTAACGAGTACACGCATCC 57.443 50.000 12.79 0.00 32.65 3.51
535 536 4.164294 AGAAACTAACGAGTACACGCATC 58.836 43.478 12.79 2.93 33.58 3.91
536 537 4.170292 AGAAACTAACGAGTACACGCAT 57.830 40.909 12.79 4.84 33.58 4.73
537 538 3.631145 AGAAACTAACGAGTACACGCA 57.369 42.857 12.79 0.21 33.58 5.24
538 539 4.962693 TCTAGAAACTAACGAGTACACGC 58.037 43.478 12.79 0.00 33.58 5.34
539 540 6.468319 CCATTCTAGAAACTAACGAGTACACG 59.532 42.308 9.71 11.29 33.58 4.49
540 541 6.750963 CCCATTCTAGAAACTAACGAGTACAC 59.249 42.308 9.71 0.00 33.58 2.90
541 542 6.626623 GCCCATTCTAGAAACTAACGAGTACA 60.627 42.308 9.71 0.00 33.58 2.90
542 543 5.747675 GCCCATTCTAGAAACTAACGAGTAC 59.252 44.000 9.71 0.00 33.58 2.73
543 544 5.163478 GGCCCATTCTAGAAACTAACGAGTA 60.163 44.000 9.71 0.00 33.58 2.59
544 545 4.382793 GGCCCATTCTAGAAACTAACGAGT 60.383 45.833 9.71 0.00 37.59 4.18
545 546 4.120589 GGCCCATTCTAGAAACTAACGAG 58.879 47.826 9.71 0.00 0.00 4.18
546 547 3.429822 CGGCCCATTCTAGAAACTAACGA 60.430 47.826 9.71 0.00 0.00 3.85
547 548 2.864343 CGGCCCATTCTAGAAACTAACG 59.136 50.000 9.71 8.35 0.00 3.18
548 549 2.612672 GCGGCCCATTCTAGAAACTAAC 59.387 50.000 9.71 0.00 0.00 2.34
549 550 2.504175 AGCGGCCCATTCTAGAAACTAA 59.496 45.455 9.71 0.00 0.00 2.24
550 551 2.116238 AGCGGCCCATTCTAGAAACTA 58.884 47.619 9.71 0.00 0.00 2.24
551 552 0.912486 AGCGGCCCATTCTAGAAACT 59.088 50.000 9.71 0.00 0.00 2.66
552 553 2.484889 CTAGCGGCCCATTCTAGAAAC 58.515 52.381 9.71 0.00 33.44 2.78
553 554 1.202651 GCTAGCGGCCCATTCTAGAAA 60.203 52.381 9.71 0.00 33.44 2.52
554 555 0.393077 GCTAGCGGCCCATTCTAGAA 59.607 55.000 7.82 7.82 33.44 2.10
555 556 0.470080 AGCTAGCGGCCCATTCTAGA 60.470 55.000 9.55 0.00 43.05 2.43
556 557 0.394565 AAGCTAGCGGCCCATTCTAG 59.605 55.000 9.55 4.45 43.05 2.43
557 558 0.106708 CAAGCTAGCGGCCCATTCTA 59.893 55.000 9.55 0.00 43.05 2.10
558 559 1.153086 CAAGCTAGCGGCCCATTCT 60.153 57.895 9.55 0.00 43.05 2.40
559 560 0.536006 ATCAAGCTAGCGGCCCATTC 60.536 55.000 9.55 0.00 43.05 2.67
560 561 0.536006 GATCAAGCTAGCGGCCCATT 60.536 55.000 9.55 0.00 43.05 3.16
561 562 1.072159 GATCAAGCTAGCGGCCCAT 59.928 57.895 9.55 0.00 43.05 4.00
562 563 2.505982 GATCAAGCTAGCGGCCCA 59.494 61.111 9.55 0.00 43.05 5.36
563 564 2.663188 CGATCAAGCTAGCGGCCC 60.663 66.667 9.55 0.00 43.05 5.80
564 565 1.663074 CTCGATCAAGCTAGCGGCC 60.663 63.158 9.55 0.00 43.05 6.13
565 566 0.937231 GACTCGATCAAGCTAGCGGC 60.937 60.000 9.55 0.00 42.19 6.53
566 567 0.665835 AGACTCGATCAAGCTAGCGG 59.334 55.000 9.55 6.06 0.00 5.52
567 568 1.064803 ACAGACTCGATCAAGCTAGCG 59.935 52.381 9.55 0.00 0.00 4.26
568 569 2.458951 CACAGACTCGATCAAGCTAGC 58.541 52.381 6.62 6.62 0.00 3.42
569 570 2.458951 GCACAGACTCGATCAAGCTAG 58.541 52.381 0.00 0.00 0.00 3.42
570 571 1.202188 CGCACAGACTCGATCAAGCTA 60.202 52.381 0.00 0.00 0.00 3.32
571 572 0.457509 CGCACAGACTCGATCAAGCT 60.458 55.000 0.00 0.00 0.00 3.74
572 573 0.456824 TCGCACAGACTCGATCAAGC 60.457 55.000 0.00 0.00 0.00 4.01
573 574 1.982612 TTCGCACAGACTCGATCAAG 58.017 50.000 0.00 0.00 34.48 3.02
574 575 2.262211 CATTCGCACAGACTCGATCAA 58.738 47.619 0.00 0.00 34.48 2.57
575 576 1.469767 CCATTCGCACAGACTCGATCA 60.470 52.381 0.00 0.00 34.48 2.92
576 577 1.203928 CCATTCGCACAGACTCGATC 58.796 55.000 0.00 0.00 34.48 3.69
577 578 0.532573 ACCATTCGCACAGACTCGAT 59.467 50.000 0.00 0.00 34.48 3.59
578 579 0.109272 GACCATTCGCACAGACTCGA 60.109 55.000 0.00 0.00 0.00 4.04
579 580 1.406219 CGACCATTCGCACAGACTCG 61.406 60.000 0.00 0.00 38.71 4.18
580 581 0.109272 TCGACCATTCGCACAGACTC 60.109 55.000 0.00 0.00 45.46 3.36
581 582 0.388649 GTCGACCATTCGCACAGACT 60.389 55.000 3.51 0.00 45.46 3.24
582 583 0.388649 AGTCGACCATTCGCACAGAC 60.389 55.000 13.01 0.00 45.46 3.51
583 584 1.135489 GTAGTCGACCATTCGCACAGA 60.135 52.381 13.01 0.00 45.46 3.41
584 585 1.135373 AGTAGTCGACCATTCGCACAG 60.135 52.381 13.01 0.00 45.46 3.66
585 586 0.885879 AGTAGTCGACCATTCGCACA 59.114 50.000 13.01 0.00 45.46 4.57
586 587 1.654105 CAAGTAGTCGACCATTCGCAC 59.346 52.381 13.01 0.00 45.46 5.34
587 588 1.542472 TCAAGTAGTCGACCATTCGCA 59.458 47.619 13.01 0.00 45.46 5.10
588 589 2.186076 CTCAAGTAGTCGACCATTCGC 58.814 52.381 13.01 0.00 45.46 4.70
590 591 2.541556 GCCTCAAGTAGTCGACCATTC 58.458 52.381 13.01 0.28 0.00 2.67
591 592 1.135083 CGCCTCAAGTAGTCGACCATT 60.135 52.381 13.01 1.49 0.00 3.16
592 593 0.456221 CGCCTCAAGTAGTCGACCAT 59.544 55.000 13.01 0.00 0.00 3.55
593 594 1.592400 CCGCCTCAAGTAGTCGACCA 61.592 60.000 13.01 0.00 0.00 4.02
594 595 1.139095 CCGCCTCAAGTAGTCGACC 59.861 63.158 13.01 0.00 0.00 4.79
595 596 0.099082 CTCCGCCTCAAGTAGTCGAC 59.901 60.000 7.70 7.70 0.00 4.20
596 597 0.322277 ACTCCGCCTCAAGTAGTCGA 60.322 55.000 0.00 0.00 0.00 4.20
597 598 0.179161 CACTCCGCCTCAAGTAGTCG 60.179 60.000 0.00 0.00 0.00 4.18
598 599 0.458716 GCACTCCGCCTCAAGTAGTC 60.459 60.000 0.00 0.00 32.94 2.59
599 600 1.592223 GCACTCCGCCTCAAGTAGT 59.408 57.895 0.00 0.00 32.94 2.73
600 601 1.517257 CGCACTCCGCCTCAAGTAG 60.517 63.158 0.00 0.00 37.30 2.57
601 602 2.209064 GACGCACTCCGCCTCAAGTA 62.209 60.000 0.00 0.00 41.76 2.24
602 603 3.575351 GACGCACTCCGCCTCAAGT 62.575 63.158 0.00 0.00 41.76 3.16
603 604 2.811317 GACGCACTCCGCCTCAAG 60.811 66.667 0.00 0.00 41.76 3.02
604 605 2.652382 TTTGACGCACTCCGCCTCAA 62.652 55.000 0.00 0.00 41.86 3.02
605 606 2.449031 ATTTGACGCACTCCGCCTCA 62.449 55.000 0.00 0.00 41.76 3.86
606 607 0.459585 TATTTGACGCACTCCGCCTC 60.460 55.000 0.00 0.00 41.76 4.70
607 608 0.460284 CTATTTGACGCACTCCGCCT 60.460 55.000 0.00 0.00 41.76 5.52
608 609 1.429148 CCTATTTGACGCACTCCGCC 61.429 60.000 0.00 0.00 41.76 6.13
609 610 0.459585 TCCTATTTGACGCACTCCGC 60.460 55.000 0.00 0.00 41.76 5.54
610 611 2.004583 TTCCTATTTGACGCACTCCG 57.995 50.000 0.00 0.00 44.21 4.63
611 612 3.426292 GCTTTTCCTATTTGACGCACTCC 60.426 47.826 0.00 0.00 0.00 3.85
612 613 3.725010 CGCTTTTCCTATTTGACGCACTC 60.725 47.826 0.00 0.00 0.00 3.51
613 614 2.159627 CGCTTTTCCTATTTGACGCACT 59.840 45.455 0.00 0.00 0.00 4.40
614 615 2.095919 ACGCTTTTCCTATTTGACGCAC 60.096 45.455 0.00 0.00 0.00 5.34
615 616 2.147958 ACGCTTTTCCTATTTGACGCA 58.852 42.857 0.00 0.00 0.00 5.24
616 617 2.415512 AGACGCTTTTCCTATTTGACGC 59.584 45.455 0.00 0.00 0.00 5.19
617 618 3.678072 TCAGACGCTTTTCCTATTTGACG 59.322 43.478 0.00 0.00 0.00 4.35
618 619 5.607119 TTCAGACGCTTTTCCTATTTGAC 57.393 39.130 0.00 0.00 0.00 3.18
619 620 5.354234 GGATTCAGACGCTTTTCCTATTTGA 59.646 40.000 0.00 0.00 0.00 2.69
620 621 5.355350 AGGATTCAGACGCTTTTCCTATTTG 59.645 40.000 0.00 0.00 31.93 2.32
621 622 5.501156 AGGATTCAGACGCTTTTCCTATTT 58.499 37.500 0.00 0.00 31.93 1.40
622 623 5.104259 AGGATTCAGACGCTTTTCCTATT 57.896 39.130 0.00 0.00 31.93 1.73
623 624 4.762289 AGGATTCAGACGCTTTTCCTAT 57.238 40.909 0.00 0.00 31.93 2.57
624 625 4.464951 TGTAGGATTCAGACGCTTTTCCTA 59.535 41.667 0.00 0.00 35.33 2.94
625 626 3.260884 TGTAGGATTCAGACGCTTTTCCT 59.739 43.478 0.00 0.00 37.38 3.36
626 627 3.596214 TGTAGGATTCAGACGCTTTTCC 58.404 45.455 0.00 0.00 0.00 3.13
627 628 4.870426 TCATGTAGGATTCAGACGCTTTTC 59.130 41.667 0.00 0.00 0.00 2.29
628 629 4.832248 TCATGTAGGATTCAGACGCTTTT 58.168 39.130 0.00 0.00 0.00 2.27
629 630 4.471904 TCATGTAGGATTCAGACGCTTT 57.528 40.909 0.00 0.00 0.00 3.51
630 631 4.437239 CTTCATGTAGGATTCAGACGCTT 58.563 43.478 0.00 0.00 0.00 4.68
631 632 3.739519 GCTTCATGTAGGATTCAGACGCT 60.740 47.826 1.21 0.00 0.00 5.07
632 633 2.541762 GCTTCATGTAGGATTCAGACGC 59.458 50.000 1.21 0.00 0.00 5.19
633 634 3.801050 CAGCTTCATGTAGGATTCAGACG 59.199 47.826 1.21 0.00 0.00 4.18
634 635 3.559242 GCAGCTTCATGTAGGATTCAGAC 59.441 47.826 1.21 0.00 0.00 3.51
635 636 3.198417 TGCAGCTTCATGTAGGATTCAGA 59.802 43.478 1.21 0.00 0.00 3.27
636 637 3.538591 TGCAGCTTCATGTAGGATTCAG 58.461 45.455 1.21 0.00 0.00 3.02
637 638 3.632643 TGCAGCTTCATGTAGGATTCA 57.367 42.857 1.21 0.00 0.00 2.57
638 639 3.691118 TGTTGCAGCTTCATGTAGGATTC 59.309 43.478 1.17 0.00 0.00 2.52
639 640 3.689347 TGTTGCAGCTTCATGTAGGATT 58.311 40.909 1.17 0.00 0.00 3.01
640 641 3.276857 CTGTTGCAGCTTCATGTAGGAT 58.723 45.455 1.17 0.00 0.00 3.24
641 642 2.038952 ACTGTTGCAGCTTCATGTAGGA 59.961 45.455 1.17 0.00 34.37 2.94
642 643 2.161012 CACTGTTGCAGCTTCATGTAGG 59.839 50.000 1.17 0.00 34.37 3.18
643 644 3.069289 TCACTGTTGCAGCTTCATGTAG 58.931 45.455 1.17 0.00 34.37 2.74
644 645 3.124578 TCACTGTTGCAGCTTCATGTA 57.875 42.857 1.17 0.00 34.37 2.29
645 646 1.971481 TCACTGTTGCAGCTTCATGT 58.029 45.000 1.17 0.00 34.37 3.21
646 647 2.921069 GCTTCACTGTTGCAGCTTCATG 60.921 50.000 1.17 0.00 38.80 3.07
647 648 1.268899 GCTTCACTGTTGCAGCTTCAT 59.731 47.619 1.17 0.00 38.80 2.57
660 661 2.980233 GCCCGTGCTTGCTTCACT 60.980 61.111 0.00 0.00 32.54 3.41
714 715 0.972134 TTTGGCCCGCAATGATCAAA 59.028 45.000 0.00 0.00 0.00 2.69
836 843 1.377202 GAGGCGAGGAAATGGTGCA 60.377 57.895 0.00 0.00 0.00 4.57
928 941 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
929 942 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
930 943 1.292941 TGAGGAGGAGGAGGAGGAGG 61.293 65.000 0.00 0.00 0.00 4.30
1197 1216 2.375345 ATAAGGTGGGAGGGGCACG 61.375 63.158 0.00 0.00 0.00 5.34
1209 1228 4.141711 ACAACACAGACAGACACATAAGGT 60.142 41.667 0.00 0.00 0.00 3.50
1229 1248 1.798234 GCACATCTGCAGGCACACAA 61.798 55.000 15.13 0.00 43.62 3.33
1535 1568 2.160205 CTCTCACAGAGTTCGGTGGTA 58.840 52.381 11.51 1.50 41.37 3.25
1538 1571 3.249091 CATTCTCTCACAGAGTTCGGTG 58.751 50.000 6.13 6.13 42.83 4.94
1547 1580 1.085091 GCCTGCACATTCTCTCACAG 58.915 55.000 0.00 0.00 0.00 3.66
1574 1607 0.106819 GCTGGCCTCATCCACATTCT 60.107 55.000 3.32 0.00 31.74 2.40
1659 1692 6.682113 GCATTCAACATTATGCATCTCCACTT 60.682 38.462 0.19 0.00 44.99 3.16
1933 1969 6.863126 AGTTCAAGAAATGCAGTAAATTTCCG 59.137 34.615 6.19 0.00 42.49 4.30
2018 2054 8.627403 CCTGCAGATTATTGTCAAAATAGTGAT 58.373 33.333 17.39 0.00 0.00 3.06
2528 2566 7.968405 GGCTCGTCATTGTATGAAAAGTAAAAT 59.032 33.333 0.00 0.00 41.69 1.82
3076 3239 9.546428 GGCTACCAATTTATGCAAAATTAAGAT 57.454 29.630 14.85 7.44 0.00 2.40
3117 3280 3.660669 TGGTAAATCTTCCCCTTTGGAGT 59.339 43.478 0.00 0.00 46.24 3.85
3118 3281 4.316025 TGGTAAATCTTCCCCTTTGGAG 57.684 45.455 0.00 0.00 46.24 3.86
3119 3282 4.965283 ATGGTAAATCTTCCCCTTTGGA 57.035 40.909 0.00 0.00 43.18 3.53
3120 3283 7.327975 GTTTAATGGTAAATCTTCCCCTTTGG 58.672 38.462 0.00 0.00 31.94 3.28
3154 3317 4.388577 AAGTAATGCTTCCCCAAAGAGT 57.611 40.909 0.00 0.00 37.12 3.24
3308 3474 3.089284 AGCCTTGTAATGCTGTTAACCC 58.911 45.455 2.48 0.00 36.23 4.11
3468 3656 7.231317 TCAGTAAGAATTTTCAGACAAGCCATT 59.769 33.333 0.00 0.00 0.00 3.16
3480 3668 7.308782 ACCATCACGATCAGTAAGAATTTTC 57.691 36.000 0.00 0.00 0.00 2.29
3517 3705 5.001237 TCAAATGCTTCATTATGCACAGG 57.999 39.130 0.00 0.00 42.26 4.00
3546 3734 6.661304 AACAATTTTCTCATTTCCAGAGCT 57.339 33.333 0.00 0.00 33.15 4.09
3547 3735 7.867403 TGTAAACAATTTTCTCATTTCCAGAGC 59.133 33.333 0.00 0.00 33.15 4.09
3800 3989 1.949525 ATTGTCAGCAAAGACGCAGTT 59.050 42.857 0.00 0.00 38.68 3.16
4002 4525 2.790433 TGGAAGGAAATCAACGGAAGG 58.210 47.619 0.00 0.00 0.00 3.46
4006 4529 4.546570 GAAAGTTGGAAGGAAATCAACGG 58.453 43.478 0.00 0.00 43.70 4.44
4037 4560 6.931840 GGAGTTAGGGTTATTAAGCTGATCAG 59.068 42.308 18.84 18.84 0.00 2.90
4048 4571 6.697641 TTCACTTGAGGAGTTAGGGTTATT 57.302 37.500 0.00 0.00 36.10 1.40
4049 4572 6.893020 ATTCACTTGAGGAGTTAGGGTTAT 57.107 37.500 0.00 0.00 36.10 1.89
4050 4573 7.801893 TTATTCACTTGAGGAGTTAGGGTTA 57.198 36.000 0.00 0.00 36.10 2.85
4051 4574 6.697641 TTATTCACTTGAGGAGTTAGGGTT 57.302 37.500 0.00 0.00 36.10 4.11
4093 4616 5.862678 AAAAAGGTAAACTAGCAAAGCCA 57.137 34.783 0.00 0.00 0.00 4.75
4319 4843 3.067106 ACCAGTCAACAGAGCATTAACG 58.933 45.455 0.00 0.00 0.00 3.18
4365 4889 1.077930 TCCAGCCATGCTCTTGAGC 60.078 57.895 15.01 15.01 36.40 4.26
4383 4907 1.346068 GTCAGCTTCTTCCCAGTCTGT 59.654 52.381 0.00 0.00 0.00 3.41
4413 4937 6.994496 GGTCAAGATCAGATATGATGTTGGAA 59.006 38.462 29.25 15.53 44.61 3.53
4495 5021 3.307242 GTCACGCAGTAACAATCAGGATC 59.693 47.826 0.00 0.00 41.61 3.36
4496 5022 3.262420 GTCACGCAGTAACAATCAGGAT 58.738 45.455 0.00 0.00 41.61 3.24
4513 5039 1.608590 CCACCACCAATCTGTTGTCAC 59.391 52.381 0.00 0.00 33.36 3.67
4599 5128 1.094785 TTAGCCAGAAAGCATTCGCC 58.905 50.000 0.00 0.00 40.63 5.54
4602 5131 3.437049 ACGACTTTAGCCAGAAAGCATTC 59.563 43.478 0.00 0.00 39.60 2.67
4647 5176 0.958382 GCACAACGCCCATCTGGTTA 60.958 55.000 0.00 0.00 36.04 2.85
4732 5262 2.134789 ACCAGCTTTCCATAGGCAAG 57.865 50.000 0.00 0.00 0.00 4.01
4733 5263 2.576191 ACTACCAGCTTTCCATAGGCAA 59.424 45.455 0.00 0.00 0.00 4.52
4735 5265 2.170607 TGACTACCAGCTTTCCATAGGC 59.829 50.000 0.00 0.00 0.00 3.93
4810 5345 8.718102 TGGTTTATCTTTGCTGAACTATACTC 57.282 34.615 0.00 0.00 0.00 2.59
4811 5346 9.113838 CATGGTTTATCTTTGCTGAACTATACT 57.886 33.333 0.00 0.00 0.00 2.12
4812 5347 7.857885 GCATGGTTTATCTTTGCTGAACTATAC 59.142 37.037 0.00 0.00 0.00 1.47
4813 5348 7.555914 TGCATGGTTTATCTTTGCTGAACTATA 59.444 33.333 0.00 0.00 34.47 1.31
4814 5349 6.377996 TGCATGGTTTATCTTTGCTGAACTAT 59.622 34.615 0.00 0.00 34.47 2.12
4815 5350 5.709631 TGCATGGTTTATCTTTGCTGAACTA 59.290 36.000 0.00 0.00 34.47 2.24
4816 5351 4.523943 TGCATGGTTTATCTTTGCTGAACT 59.476 37.500 0.00 0.00 34.47 3.01
4817 5352 4.808558 TGCATGGTTTATCTTTGCTGAAC 58.191 39.130 0.00 0.00 34.47 3.18
4818 5353 5.221402 TGTTGCATGGTTTATCTTTGCTGAA 60.221 36.000 0.00 0.00 34.47 3.02
4819 5354 4.280425 TGTTGCATGGTTTATCTTTGCTGA 59.720 37.500 0.00 0.00 34.47 4.26
4820 5355 4.558178 TGTTGCATGGTTTATCTTTGCTG 58.442 39.130 0.00 0.00 34.47 4.41
4821 5356 4.322198 CCTGTTGCATGGTTTATCTTTGCT 60.322 41.667 0.00 0.00 34.47 3.91
4822 5357 3.928375 CCTGTTGCATGGTTTATCTTTGC 59.072 43.478 0.00 0.00 0.00 3.68
4823 5358 4.220382 TCCCTGTTGCATGGTTTATCTTTG 59.780 41.667 0.00 0.00 0.00 2.77
4824 5359 4.415596 TCCCTGTTGCATGGTTTATCTTT 58.584 39.130 0.00 0.00 0.00 2.52
4825 5360 4.046286 TCCCTGTTGCATGGTTTATCTT 57.954 40.909 0.00 0.00 0.00 2.40
4826 5361 3.737559 TCCCTGTTGCATGGTTTATCT 57.262 42.857 0.00 0.00 0.00 1.98
4827 5362 3.953612 TCATCCCTGTTGCATGGTTTATC 59.046 43.478 0.00 0.00 0.00 1.75
4828 5363 3.979911 TCATCCCTGTTGCATGGTTTAT 58.020 40.909 0.00 0.00 0.00 1.40
4829 5364 3.448093 TCATCCCTGTTGCATGGTTTA 57.552 42.857 0.00 0.00 0.00 2.01
4830 5365 2.307496 TCATCCCTGTTGCATGGTTT 57.693 45.000 0.00 0.00 0.00 3.27
4831 5366 2.537633 ATCATCCCTGTTGCATGGTT 57.462 45.000 0.00 0.00 0.00 3.67
4832 5367 3.053395 AGTTATCATCCCTGTTGCATGGT 60.053 43.478 0.00 0.00 0.00 3.55
4833 5368 3.559069 AGTTATCATCCCTGTTGCATGG 58.441 45.455 0.00 0.00 0.00 3.66
4834 5369 5.614308 TCTAGTTATCATCCCTGTTGCATG 58.386 41.667 0.00 0.00 0.00 4.06
4835 5370 5.367937 ACTCTAGTTATCATCCCTGTTGCAT 59.632 40.000 0.00 0.00 0.00 3.96
4836 5371 4.716784 ACTCTAGTTATCATCCCTGTTGCA 59.283 41.667 0.00 0.00 0.00 4.08
4837 5372 5.283457 ACTCTAGTTATCATCCCTGTTGC 57.717 43.478 0.00 0.00 0.00 4.17
4838 5373 9.303116 ACTATACTCTAGTTATCATCCCTGTTG 57.697 37.037 0.00 0.00 0.00 3.33
4839 5374 9.884814 AACTATACTCTAGTTATCATCCCTGTT 57.115 33.333 0.00 0.00 36.14 3.16
4840 5375 9.523168 GAACTATACTCTAGTTATCATCCCTGT 57.477 37.037 0.00 0.00 37.83 4.00
4841 5376 9.521841 TGAACTATACTCTAGTTATCATCCCTG 57.478 37.037 0.00 0.00 37.83 4.45
4842 5377 9.747898 CTGAACTATACTCTAGTTATCATCCCT 57.252 37.037 0.00 0.00 37.83 4.20
4843 5378 8.463607 GCTGAACTATACTCTAGTTATCATCCC 58.536 40.741 0.00 0.00 37.83 3.85
4844 5379 9.015367 TGCTGAACTATACTCTAGTTATCATCC 57.985 37.037 0.00 0.00 37.83 3.51
4850 5385 9.032624 ACCTTTTGCTGAACTATACTCTAGTTA 57.967 33.333 0.00 0.00 37.83 2.24
4851 5386 7.908453 ACCTTTTGCTGAACTATACTCTAGTT 58.092 34.615 0.00 0.00 40.15 2.24
4852 5387 7.178628 TGACCTTTTGCTGAACTATACTCTAGT 59.821 37.037 0.00 0.00 0.00 2.57
4873 5408 1.136329 AACAGATGGCCACCTGACCT 61.136 55.000 34.76 14.46 34.65 3.85
4874 5409 0.618458 TAACAGATGGCCACCTGACC 59.382 55.000 34.76 6.54 34.65 4.02
4875 5410 1.003118 TGTAACAGATGGCCACCTGAC 59.997 52.381 34.76 22.16 34.65 3.51
4912 5447 3.198068 GAGAAAGCAGAACAGTGACACA 58.802 45.455 8.59 0.00 0.00 3.72
4983 5519 6.692486 GGGGACATCGCCTCATATATATAAG 58.308 44.000 7.70 0.00 44.66 1.73
5124 5672 2.279784 GGGAAGCGGATGAGAGCG 60.280 66.667 0.00 0.00 38.61 5.03
5126 5674 1.227497 GCAGGGAAGCGGATGAGAG 60.227 63.158 0.00 0.00 0.00 3.20
5150 5698 1.142748 GCAGATGTCGGAGTCCAGG 59.857 63.158 10.49 0.00 0.00 4.45
5153 5701 1.517257 CGTGCAGATGTCGGAGTCC 60.517 63.158 0.00 0.00 0.00 3.85
5175 5723 5.615289 AGTTTACTCTCAATCAGCTGTGTT 58.385 37.500 14.67 7.44 0.00 3.32
5308 5856 8.146479 AGCTTTTTAGCATTTTGAAAGGAAAG 57.854 30.769 0.00 0.00 37.25 2.62
5384 5940 3.825585 TCATGTGAGCAAAGCAAACCATA 59.174 39.130 0.00 0.00 0.00 2.74
5385 5941 2.629137 TCATGTGAGCAAAGCAAACCAT 59.371 40.909 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.