Multiple sequence alignment - TraesCS1D01G196600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G196600 chr1D 100.000 5807 0 0 959 6765 276525830 276531636 0.000000e+00 10724.0
1 TraesCS1D01G196600 chr1D 100.000 645 0 0 1 645 276524872 276525516 0.000000e+00 1192.0
2 TraesCS1D01G196600 chr1D 82.609 552 83 8 4147 4695 276502324 276502865 6.140000e-130 475.0
3 TraesCS1D01G196600 chr1D 85.093 161 17 5 3754 3910 276502119 276502276 2.530000e-34 158.0
4 TraesCS1D01G196600 chr1D 92.958 71 5 0 56 126 374360812 374360742 3.340000e-18 104.0
5 TraesCS1D01G196600 chr1D 93.443 61 4 0 56 116 298061754 298061814 2.600000e-14 91.6
6 TraesCS1D01G196600 chr1D 96.000 50 1 1 6409 6457 276531234 276531283 5.620000e-11 80.5
7 TraesCS1D01G196600 chr1D 96.000 50 1 1 6363 6412 276531280 276531328 5.620000e-11 80.5
8 TraesCS1D01G196600 chr1A 92.702 2028 86 19 1922 3917 348712994 348714991 0.000000e+00 2868.0
9 TraesCS1D01G196600 chr1A 96.061 1701 32 10 4100 5797 348714989 348716657 0.000000e+00 2737.0
10 TraesCS1D01G196600 chr1A 91.968 1133 64 13 959 2078 348712098 348713216 0.000000e+00 1563.0
11 TraesCS1D01G196600 chr1A 93.594 640 19 13 5791 6412 348716707 348717342 0.000000e+00 935.0
12 TraesCS1D01G196600 chr1A 91.148 418 32 3 1 416 348711222 348711636 4.580000e-156 562.0
13 TraesCS1D01G196600 chr1A 94.005 367 13 4 6408 6765 348717290 348717656 1.280000e-151 547.0
14 TraesCS1D01G196600 chr1A 81.421 549 88 9 4150 4695 348693618 348694155 2.900000e-118 436.0
15 TraesCS1D01G196600 chr1A 89.474 190 17 2 3915 4104 393460748 393460934 3.150000e-58 237.0
16 TraesCS1D01G196600 chr1A 84.456 193 23 5 3915 4101 588159675 588159866 4.170000e-42 183.0
17 TraesCS1D01G196600 chr1A 85.093 161 17 5 3754 3910 348693408 348693565 2.530000e-34 158.0
18 TraesCS1D01G196600 chr1A 97.753 89 1 1 400 488 348711651 348711738 1.180000e-32 152.0
19 TraesCS1D01G196600 chr1A 88.732 71 7 1 56 125 554283406 554283476 1.210000e-12 86.1
20 TraesCS1D01G196600 chr1A 88.732 71 7 1 56 125 554290287 554290217 1.210000e-12 86.1
21 TraesCS1D01G196600 chr1B 97.123 1703 26 5 4100 5797 375815165 375816849 0.000000e+00 2852.0
22 TraesCS1D01G196600 chr1B 92.018 2017 94 15 1942 3917 375813177 375815167 0.000000e+00 2771.0
23 TraesCS1D01G196600 chr1B 90.353 1078 71 14 1012 2078 375812318 375813373 0.000000e+00 1384.0
24 TraesCS1D01G196600 chr1B 91.587 416 9 4 253 645 375811691 375812103 9.920000e-153 551.0
25 TraesCS1D01G196600 chr1B 82.946 645 58 21 5791 6405 375816898 375817520 9.990000e-148 534.0
26 TraesCS1D01G196600 chr1B 91.803 366 17 7 6408 6765 375817478 375817838 1.310000e-136 497.0
27 TraesCS1D01G196600 chr1B 82.149 549 85 8 4150 4695 375805320 375805858 6.180000e-125 459.0
28 TraesCS1D01G196600 chr1B 89.552 268 28 0 1 268 375811410 375811677 2.340000e-89 340.0
29 TraesCS1D01G196600 chr1B 94.375 160 6 1 959 1118 375812184 375812340 6.780000e-60 243.0
30 TraesCS1D01G196600 chr1B 80.087 231 36 9 3685 3910 375805049 375805274 5.430000e-36 163.0
31 TraesCS1D01G196600 chr3B 80.068 878 146 19 4100 4974 681954694 681955545 5.760000e-175 625.0
32 TraesCS1D01G196600 chr3B 80.556 756 108 20 2709 3460 681952997 681953717 4.610000e-151 545.0
33 TraesCS1D01G196600 chr3B 88.066 243 27 2 3675 3917 681954456 681954696 3.090000e-73 287.0
34 TraesCS1D01G196600 chr3B 87.059 170 15 2 3915 4084 25121176 25121014 1.160000e-42 185.0
35 TraesCS1D01G196600 chr3B 85.955 178 15 7 3931 4103 569966917 569967089 1.500000e-41 182.0
36 TraesCS1D01G196600 chr3B 88.889 117 7 2 5299 5409 681955561 681955677 9.150000e-29 139.0
37 TraesCS1D01G196600 chr3B 78.283 198 17 14 6514 6706 681956685 681956861 3.340000e-18 104.0
38 TraesCS1D01G196600 chr4D 93.048 187 8 4 3915 4101 301014621 301014440 1.120000e-67 268.0
39 TraesCS1D01G196600 chr4D 88.506 174 17 3 3931 4103 271321867 271322038 2.470000e-49 207.0
40 TraesCS1D01G196600 chr2D 90.374 187 11 1 3915 4101 287236847 287236668 8.770000e-59 239.0
41 TraesCS1D01G196600 chr2D 84.656 189 22 3 3915 4101 72166629 72166812 1.500000e-41 182.0
42 TraesCS1D01G196600 chr4B 86.517 178 13 6 3931 4103 321213628 321213457 1.160000e-42 185.0
43 TraesCS1D01G196600 chr4B 88.732 71 8 0 56 126 142569251 142569181 3.360000e-13 87.9
44 TraesCS1D01G196600 chr3D 89.286 84 8 1 56 139 538477670 538477588 3.340000e-18 104.0
45 TraesCS1D01G196600 chr3D 90.000 70 7 0 56 125 27901523 27901454 2.600000e-14 91.6
46 TraesCS1D01G196600 chr7D 92.857 70 5 0 56 125 116824735 116824666 1.200000e-17 102.0
47 TraesCS1D01G196600 chr6D 92.857 70 5 0 56 125 443452146 443452215 1.200000e-17 102.0
48 TraesCS1D01G196600 chr6D 95.082 61 3 0 56 116 55208518 55208578 5.580000e-16 97.1
49 TraesCS1D01G196600 chr5D 91.429 70 6 0 56 125 122518240 122518309 5.580000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G196600 chr1D 276524872 276531636 6764 False 3019.250000 10724 98.000000 1 6765 4 chr1D.!!$F3 6764
1 TraesCS1D01G196600 chr1D 276502119 276502865 746 False 316.500000 475 83.851000 3754 4695 2 chr1D.!!$F2 941
2 TraesCS1D01G196600 chr1A 348711222 348717656 6434 False 1337.714286 2868 93.890143 1 6765 7 chr1A.!!$F5 6764
3 TraesCS1D01G196600 chr1A 348693408 348694155 747 False 297.000000 436 83.257000 3754 4695 2 chr1A.!!$F4 941
4 TraesCS1D01G196600 chr1B 375811410 375817838 6428 False 1146.500000 2852 91.219625 1 6765 8 chr1B.!!$F2 6764
5 TraesCS1D01G196600 chr1B 375805049 375805858 809 False 311.000000 459 81.118000 3685 4695 2 chr1B.!!$F1 1010
6 TraesCS1D01G196600 chr3B 681952997 681956861 3864 False 340.000000 625 83.172400 2709 6706 5 chr3B.!!$F2 3997

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
82 83 0.921347 CGAGCCAAAATACGAGTCGG 59.079 55.0 18.30 0.0 0.00 4.79 F
1962 2114 0.179097 GGGACAAGAGGAGACATCGC 60.179 60.0 0.00 0.0 0.00 4.58 F
2082 2237 0.037232 GGAAGACAAGGAGACACGGG 60.037 60.0 0.00 0.0 0.00 5.28 F
2495 2669 0.250597 AGGTCGCACTTTTGGTACCC 60.251 55.0 10.07 0.0 0.00 3.69 F
3977 4724 0.606096 TGGACTACCACACACGGATG 59.394 55.0 0.00 0.0 41.77 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2034 2186 0.034089 GGACCTGGAACCTTGATGGG 60.034 60.0 0.0 0.0 41.11 4.00 R
3958 4705 0.606096 CATCCGTGTGTGGTAGTCCA 59.394 55.0 0.0 0.0 42.05 4.02 R
3959 4706 0.606604 ACATCCGTGTGTGGTAGTCC 59.393 55.0 0.0 0.0 37.14 3.85 R
4185 4939 0.379669 CCAATCTGTCCGAGCAATGC 59.620 55.0 0.0 0.0 0.00 3.56 R
5782 6626 0.899720 AGCCAATGAAACCATGCCAG 59.100 50.0 0.0 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 0.921347 CGAGCCAAAATACGAGTCGG 59.079 55.000 18.30 0.00 0.00 4.79
87 88 2.673043 GCCAAAATACGAGTCGGTCTCA 60.673 50.000 18.30 0.00 42.88 3.27
125 126 5.597182 TCTCGAGCTTTTCTTATAGCCCTAA 59.403 40.000 7.81 0.00 38.14 2.69
235 236 1.912731 TGTTGGGTAGAGGCATGCTTA 59.087 47.619 18.92 5.37 0.00 3.09
257 287 1.876849 TGGTTGCCCATGCCAAATAT 58.123 45.000 0.00 0.00 35.17 1.28
299 329 2.711542 CCGGCCTCTACAGAAATTGTT 58.288 47.619 0.00 0.00 41.29 2.83
500 563 1.152631 ACCCAAAGGTCCCAAACGG 60.153 57.895 0.00 0.00 46.45 4.44
1324 1465 5.235401 GCCCGATCTTCTTCTATTTTGTCTC 59.765 44.000 0.00 0.00 0.00 3.36
1342 1483 6.438259 TGTCTCTTTAGTCCTGTTCTATCG 57.562 41.667 0.00 0.00 0.00 2.92
1418 1559 1.461127 GCGCTAATTAATCCGCTGGAG 59.539 52.381 16.18 0.00 42.83 3.86
1444 1588 5.876357 TCTTGTACTATTTTGCTTCCCTGT 58.124 37.500 0.00 0.00 0.00 4.00
1533 1677 5.031578 GTCGCGGCTATCTAGATAGATTTG 58.968 45.833 34.32 22.54 42.55 2.32
1604 1753 6.508202 TGATTACCCCTAGATAGGTAGCTACT 59.492 42.308 22.74 11.65 42.03 2.57
1673 1822 1.005924 CCCCCTTGATTTGGCACTAGT 59.994 52.381 0.00 0.00 0.00 2.57
1782 1931 1.078214 TTTGCTGCTAGCTCCGCAT 60.078 52.632 21.43 0.00 42.97 4.73
1832 1981 6.017605 CCTGACATTAACATCACTAATCTGGC 60.018 42.308 0.00 0.00 0.00 4.85
1877 2026 3.710722 CAGGGTCCGGCTTCAGCT 61.711 66.667 0.00 0.00 41.70 4.24
1889 2038 1.065564 GCTTCAGCTGAGGAAGGACAT 60.066 52.381 28.36 0.00 41.57 3.06
1898 2047 1.407258 GAGGAAGGACATGAGGAGACG 59.593 57.143 0.00 0.00 0.00 4.18
1901 2050 2.096248 GAAGGACATGAGGAGACGTCT 58.904 52.381 20.18 20.18 0.00 4.18
1902 2051 1.757682 AGGACATGAGGAGACGTCTC 58.242 55.000 32.96 32.96 42.14 3.36
1961 2113 1.407258 GAGGGACAAGAGGAGACATCG 59.593 57.143 0.00 0.00 0.00 3.84
1962 2114 0.179097 GGGACAAGAGGAGACATCGC 60.179 60.000 0.00 0.00 0.00 4.58
1964 2116 1.066858 GGACAAGAGGAGACATCGCAA 60.067 52.381 0.00 0.00 0.00 4.85
2000 2152 1.153349 GGTTCCAGATCCAGCCGAC 60.153 63.158 0.00 0.00 0.00 4.79
2005 2157 2.043852 AGATCCAGCCGACGAGGT 60.044 61.111 0.00 0.00 43.70 3.85
2007 2159 0.820074 AGATCCAGCCGACGAGGTAG 60.820 60.000 0.00 0.00 43.70 3.18
2009 2161 0.820074 ATCCAGCCGACGAGGTAGAG 60.820 60.000 0.00 0.00 43.70 2.43
2010 2162 1.451567 CCAGCCGACGAGGTAGAGA 60.452 63.158 0.00 0.00 43.70 3.10
2021 2173 2.546368 CGAGGTAGAGAAGGAGACATCG 59.454 54.545 0.00 0.00 39.33 3.84
2022 2174 2.292292 GAGGTAGAGAAGGAGACATCGC 59.708 54.545 0.00 0.00 32.09 4.58
2025 2177 2.957491 AGAGAAGGAGACATCGCAAG 57.043 50.000 0.00 0.00 32.09 4.01
2050 2205 2.834638 AATCCCATCAAGGTTCCAGG 57.165 50.000 0.00 0.00 34.66 4.45
2052 2207 0.991920 TCCCATCAAGGTTCCAGGTC 59.008 55.000 0.00 0.00 34.66 3.85
2060 2215 2.670148 GGTTCCAGGTCCAGCCGAT 61.670 63.158 0.00 0.00 43.70 4.18
2065 2220 2.060383 CAGGTCCAGCCGATGAGGA 61.060 63.158 0.00 0.00 45.00 3.71
2078 2233 2.493675 CGATGAGGAAGACAAGGAGACA 59.506 50.000 0.00 0.00 0.00 3.41
2079 2234 3.674682 CGATGAGGAAGACAAGGAGACAC 60.675 52.174 0.00 0.00 0.00 3.67
2080 2235 1.613925 TGAGGAAGACAAGGAGACACG 59.386 52.381 0.00 0.00 0.00 4.49
2081 2236 0.969894 AGGAAGACAAGGAGACACGG 59.030 55.000 0.00 0.00 0.00 4.94
2082 2237 0.037232 GGAAGACAAGGAGACACGGG 60.037 60.000 0.00 0.00 0.00 5.28
2083 2238 0.037232 GAAGACAAGGAGACACGGGG 60.037 60.000 0.00 0.00 0.00 5.73
2084 2239 0.471211 AAGACAAGGAGACACGGGGA 60.471 55.000 0.00 0.00 0.00 4.81
2092 2247 1.608283 GGAGACACGGGGAGACAAAAG 60.608 57.143 0.00 0.00 0.00 2.27
2125 2280 1.525923 CAGGTCTGGCAGATGAGGG 59.474 63.158 21.84 5.42 0.00 4.30
2133 2288 1.451028 GCAGATGAGGGTGACTGGC 60.451 63.158 0.00 0.00 0.00 4.85
2267 2441 4.362279 TGTCAATTCTTGTTTGAAGCTGC 58.638 39.130 0.00 0.00 35.03 5.25
2341 2515 7.604927 TGGTGTACCAATTTTATCTAGTGTGTC 59.395 37.037 0.24 0.00 44.35 3.67
2405 2579 9.489084 TCATGCACTCCAATATTTACATAGTAC 57.511 33.333 0.00 0.00 0.00 2.73
2406 2580 9.494271 CATGCACTCCAATATTTACATAGTACT 57.506 33.333 0.00 0.00 0.00 2.73
2407 2581 8.887036 TGCACTCCAATATTTACATAGTACTG 57.113 34.615 5.39 0.00 0.00 2.74
2408 2582 8.482943 TGCACTCCAATATTTACATAGTACTGT 58.517 33.333 5.39 0.00 0.00 3.55
2409 2583 9.976511 GCACTCCAATATTTACATAGTACTGTA 57.023 33.333 5.39 0.00 0.00 2.74
2495 2669 0.250597 AGGTCGCACTTTTGGTACCC 60.251 55.000 10.07 0.00 0.00 3.69
2551 2725 2.766345 ATTGCATTGTGGCGGATTTT 57.234 40.000 0.00 0.00 36.28 1.82
2698 2872 9.857656 ATCAAGATTGTATGGATCTGTACAATT 57.142 29.630 24.10 14.80 46.14 2.32
2703 2877 5.842907 TGTATGGATCTGTACAATTCGAGG 58.157 41.667 0.00 0.00 0.00 4.63
3146 3325 8.771920 TTAATTGTATTCTCCAGTGTGTAGTG 57.228 34.615 0.00 0.00 0.00 2.74
3158 3337 3.698250 TGTAGTGCACACAGTTCCC 57.302 52.632 21.04 0.00 30.04 3.97
3233 3412 7.767261 AGTCATCTAGTTCAATCTACTGTCAC 58.233 38.462 0.00 0.00 0.00 3.67
3260 3439 3.572604 AGTTTACCTACTGTCGAGCAC 57.427 47.619 0.00 0.00 0.00 4.40
3335 3514 2.368875 AGGTGGTTCTGACGAATTCTGT 59.631 45.455 3.52 3.32 0.00 3.41
3468 3647 7.365497 AGCCTTTAAAATTCCTTCCCATATG 57.635 36.000 0.00 0.00 0.00 1.78
3517 3963 3.660111 GCCTGTGGTGTTGGTCGC 61.660 66.667 0.00 0.00 0.00 5.19
3522 3968 2.892914 TGGTGTTGGTCGCGTGTG 60.893 61.111 5.77 0.00 0.00 3.82
3523 3969 2.893404 GGTGTTGGTCGCGTGTGT 60.893 61.111 5.77 0.00 0.00 3.72
3524 3970 1.592131 GGTGTTGGTCGCGTGTGTA 60.592 57.895 5.77 0.00 0.00 2.90
3526 3972 1.952133 TGTTGGTCGCGTGTGTAGC 60.952 57.895 5.77 0.00 0.00 3.58
3917 4664 5.084519 TGTTGATCCTCACTACCAGTTACT 58.915 41.667 0.00 0.00 0.00 2.24
3918 4665 5.185249 TGTTGATCCTCACTACCAGTTACTC 59.815 44.000 0.00 0.00 0.00 2.59
3919 4666 4.279145 TGATCCTCACTACCAGTTACTCC 58.721 47.826 0.00 0.00 0.00 3.85
3920 4667 3.097342 TCCTCACTACCAGTTACTCCC 57.903 52.381 0.00 0.00 0.00 4.30
3921 4668 2.653366 TCCTCACTACCAGTTACTCCCT 59.347 50.000 0.00 0.00 0.00 4.20
3922 4669 3.025262 CCTCACTACCAGTTACTCCCTC 58.975 54.545 0.00 0.00 0.00 4.30
3923 4670 3.563697 CCTCACTACCAGTTACTCCCTCA 60.564 52.174 0.00 0.00 0.00 3.86
3924 4671 3.697045 CTCACTACCAGTTACTCCCTCAG 59.303 52.174 0.00 0.00 0.00 3.35
3925 4672 3.075582 TCACTACCAGTTACTCCCTCAGT 59.924 47.826 0.00 0.00 39.41 3.41
3926 4673 3.833070 CACTACCAGTTACTCCCTCAGTT 59.167 47.826 0.00 0.00 36.43 3.16
3927 4674 4.082136 CACTACCAGTTACTCCCTCAGTTC 60.082 50.000 0.00 0.00 36.43 3.01
3928 4675 2.258109 ACCAGTTACTCCCTCAGTTCC 58.742 52.381 0.00 0.00 36.43 3.62
3929 4676 2.158143 ACCAGTTACTCCCTCAGTTCCT 60.158 50.000 0.00 0.00 36.43 3.36
3930 4677 3.077088 ACCAGTTACTCCCTCAGTTCCTA 59.923 47.826 0.00 0.00 36.43 2.94
3931 4678 4.094476 CCAGTTACTCCCTCAGTTCCTAA 58.906 47.826 0.00 0.00 36.43 2.69
3932 4679 4.530946 CCAGTTACTCCCTCAGTTCCTAAA 59.469 45.833 0.00 0.00 36.43 1.85
3933 4680 5.189934 CCAGTTACTCCCTCAGTTCCTAAAT 59.810 44.000 0.00 0.00 36.43 1.40
3934 4681 6.383147 CCAGTTACTCCCTCAGTTCCTAAATA 59.617 42.308 0.00 0.00 36.43 1.40
3935 4682 7.071321 CCAGTTACTCCCTCAGTTCCTAAATAT 59.929 40.741 0.00 0.00 36.43 1.28
3936 4683 8.487028 CAGTTACTCCCTCAGTTCCTAAATATT 58.513 37.037 0.00 0.00 36.43 1.28
3937 4684 9.059023 AGTTACTCCCTCAGTTCCTAAATATTT 57.941 33.333 5.89 5.89 36.43 1.40
3938 4685 9.110502 GTTACTCCCTCAGTTCCTAAATATTTG 57.889 37.037 11.05 1.40 36.43 2.32
3939 4686 7.272144 ACTCCCTCAGTTCCTAAATATTTGT 57.728 36.000 11.05 0.00 26.56 2.83
3940 4687 7.339482 ACTCCCTCAGTTCCTAAATATTTGTC 58.661 38.462 11.05 0.00 26.56 3.18
3941 4688 7.182930 ACTCCCTCAGTTCCTAAATATTTGTCT 59.817 37.037 11.05 0.00 26.56 3.41
3942 4689 7.928873 TCCCTCAGTTCCTAAATATTTGTCTT 58.071 34.615 11.05 0.00 0.00 3.01
3943 4690 8.390921 TCCCTCAGTTCCTAAATATTTGTCTTT 58.609 33.333 11.05 0.00 0.00 2.52
3944 4691 9.025041 CCCTCAGTTCCTAAATATTTGTCTTTT 57.975 33.333 11.05 0.00 0.00 2.27
3962 4709 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
3963 4710 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
3975 4722 4.603052 TGGACTACCACACACGGA 57.397 55.556 0.00 0.00 41.77 4.69
3976 4723 3.060828 TGGACTACCACACACGGAT 57.939 52.632 0.00 0.00 41.77 4.18
3977 4724 0.606096 TGGACTACCACACACGGATG 59.394 55.000 0.00 0.00 41.77 3.51
3978 4725 0.606604 GGACTACCACACACGGATGT 59.393 55.000 0.00 0.00 36.29 3.06
3979 4726 1.820519 GGACTACCACACACGGATGTA 59.179 52.381 0.00 0.00 34.91 2.29
3980 4727 2.429610 GGACTACCACACACGGATGTAT 59.570 50.000 0.00 0.00 34.91 2.29
3981 4728 3.633525 GGACTACCACACACGGATGTATA 59.366 47.826 0.00 0.00 34.91 1.47
3982 4729 4.280174 GGACTACCACACACGGATGTATAT 59.720 45.833 0.00 0.00 34.91 0.86
3983 4730 5.474532 GGACTACCACACACGGATGTATATA 59.525 44.000 0.00 0.00 34.91 0.86
3984 4731 6.349115 GGACTACCACACACGGATGTATATAG 60.349 46.154 0.00 0.00 34.91 1.31
3985 4732 6.301486 ACTACCACACACGGATGTATATAGA 58.699 40.000 10.23 0.00 36.72 1.98
3986 4733 5.449107 ACCACACACGGATGTATATAGAC 57.551 43.478 0.00 0.00 36.72 2.59
3987 4734 4.891168 ACCACACACGGATGTATATAGACA 59.109 41.667 2.07 2.07 36.72 3.41
3988 4735 5.538813 ACCACACACGGATGTATATAGACAT 59.461 40.000 12.70 12.70 42.82 3.06
3989 4736 6.717997 ACCACACACGGATGTATATAGACATA 59.282 38.462 12.82 0.00 40.18 2.29
3990 4737 7.396339 ACCACACACGGATGTATATAGACATAT 59.604 37.037 12.82 0.00 40.18 1.78
3991 4738 8.251026 CCACACACGGATGTATATAGACATATT 58.749 37.037 12.82 0.00 40.18 1.28
3992 4739 9.639601 CACACACGGATGTATATAGACATATTT 57.360 33.333 12.82 0.00 40.18 1.40
4041 4788 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
4042 4789 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
4043 4790 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
4044 4791 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4045 4792 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4046 4793 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4047 4794 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4048 4795 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4049 4796 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4050 4797 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4051 4798 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4052 4799 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4053 4800 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
4054 4801 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
4055 4802 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
4056 4803 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
4057 4804 5.648178 TTTGCTCCGTATGTAGTCACTTA 57.352 39.130 0.00 0.00 0.00 2.24
4058 4805 5.847111 TTGCTCCGTATGTAGTCACTTAT 57.153 39.130 0.00 0.00 0.00 1.73
4059 4806 5.847111 TGCTCCGTATGTAGTCACTTATT 57.153 39.130 0.00 0.00 0.00 1.40
4060 4807 5.588240 TGCTCCGTATGTAGTCACTTATTG 58.412 41.667 0.00 0.00 0.00 1.90
4061 4808 5.358725 TGCTCCGTATGTAGTCACTTATTGA 59.641 40.000 0.00 0.00 0.00 2.57
4062 4809 6.127563 TGCTCCGTATGTAGTCACTTATTGAA 60.128 38.462 0.00 0.00 35.39 2.69
4063 4810 6.755141 GCTCCGTATGTAGTCACTTATTGAAA 59.245 38.462 0.00 0.00 35.39 2.69
4064 4811 7.438459 GCTCCGTATGTAGTCACTTATTGAAAT 59.562 37.037 0.00 0.00 35.39 2.17
4065 4812 8.867112 TCCGTATGTAGTCACTTATTGAAATC 57.133 34.615 0.00 0.00 35.39 2.17
4066 4813 8.692710 TCCGTATGTAGTCACTTATTGAAATCT 58.307 33.333 0.00 0.00 35.39 2.40
4067 4814 8.969267 CCGTATGTAGTCACTTATTGAAATCTC 58.031 37.037 0.00 0.00 35.39 2.75
4068 4815 8.682895 CGTATGTAGTCACTTATTGAAATCTCG 58.317 37.037 0.00 0.00 35.39 4.04
4069 4816 9.731819 GTATGTAGTCACTTATTGAAATCTCGA 57.268 33.333 0.00 0.00 35.39 4.04
4070 4817 8.864069 ATGTAGTCACTTATTGAAATCTCGAG 57.136 34.615 5.93 5.93 35.39 4.04
4071 4818 8.051901 TGTAGTCACTTATTGAAATCTCGAGA 57.948 34.615 19.19 19.19 35.39 4.04
4072 4819 8.520351 TGTAGTCACTTATTGAAATCTCGAGAA 58.480 33.333 20.91 2.12 35.39 2.87
4073 4820 9.355215 GTAGTCACTTATTGAAATCTCGAGAAA 57.645 33.333 20.91 9.59 35.39 2.52
4074 4821 8.472683 AGTCACTTATTGAAATCTCGAGAAAG 57.527 34.615 20.91 17.77 35.39 2.62
4075 4822 8.307483 AGTCACTTATTGAAATCTCGAGAAAGA 58.693 33.333 20.91 3.31 35.39 2.52
4076 4823 8.376942 GTCACTTATTGAAATCTCGAGAAAGAC 58.623 37.037 20.91 11.62 35.39 3.01
4077 4824 8.088365 TCACTTATTGAAATCTCGAGAAAGACA 58.912 33.333 20.91 13.99 0.00 3.41
4078 4825 8.712363 CACTTATTGAAATCTCGAGAAAGACAA 58.288 33.333 20.91 20.83 0.00 3.18
4079 4826 9.273016 ACTTATTGAAATCTCGAGAAAGACAAA 57.727 29.630 20.91 9.81 0.00 2.83
4090 4837 9.367444 TCTCGAGAAAGACAAATATTTAGGAAC 57.633 33.333 14.01 0.00 0.00 3.62
4091 4838 8.181487 TCGAGAAAGACAAATATTTAGGAACG 57.819 34.615 0.00 1.20 0.00 3.95
4092 4839 7.277098 TCGAGAAAGACAAATATTTAGGAACGG 59.723 37.037 0.00 0.00 0.00 4.44
4093 4840 7.277098 CGAGAAAGACAAATATTTAGGAACGGA 59.723 37.037 0.00 0.00 0.00 4.69
4094 4841 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
4095 4842 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
4096 4843 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
4097 4844 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
4098 4845 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
4099 4846 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
4100 4847 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
4101 4848 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
4185 4939 4.505191 CAGTTGAATTGTCCAAAGTGCAAG 59.495 41.667 0.00 0.00 0.00 4.01
4263 5017 5.027293 TGGACACTATCATGGATTCACTG 57.973 43.478 0.00 0.00 0.00 3.66
4867 5629 7.575155 CGTGGTTCTCTACATTACTTGAGAAGA 60.575 40.741 0.00 0.00 43.42 2.87
4868 5630 8.088981 GTGGTTCTCTACATTACTTGAGAAGAA 58.911 37.037 0.00 0.00 43.42 2.52
4869 5631 8.307483 TGGTTCTCTACATTACTTGAGAAGAAG 58.693 37.037 0.00 0.00 43.42 2.85
4878 5640 9.136323 ACATTACTTGAGAAGAAGGAAATGTTT 57.864 29.630 0.00 0.00 38.84 2.83
5485 6256 2.040412 AGTTTCCCACAATGGTCTCTCC 59.960 50.000 0.00 0.00 35.17 3.71
5600 6444 7.672983 TTATGAGGCTTGTCTCTTTTTGTAG 57.327 36.000 3.84 0.00 34.98 2.74
5601 6445 5.290493 TGAGGCTTGTCTCTTTTTGTAGA 57.710 39.130 3.84 0.00 34.98 2.59
5602 6446 5.680619 TGAGGCTTGTCTCTTTTTGTAGAA 58.319 37.500 3.84 0.00 34.98 2.10
5603 6447 5.760253 TGAGGCTTGTCTCTTTTTGTAGAAG 59.240 40.000 3.84 0.00 34.98 2.85
5604 6448 5.930135 AGGCTTGTCTCTTTTTGTAGAAGA 58.070 37.500 0.00 0.00 0.00 2.87
5605 6449 6.357367 AGGCTTGTCTCTTTTTGTAGAAGAA 58.643 36.000 0.00 0.00 33.10 2.52
5606 6450 6.484977 AGGCTTGTCTCTTTTTGTAGAAGAAG 59.515 38.462 0.00 0.00 33.10 2.85
5607 6451 6.483640 GGCTTGTCTCTTTTTGTAGAAGAAGA 59.516 38.462 5.60 5.60 33.10 2.87
5608 6452 7.012421 GGCTTGTCTCTTTTTGTAGAAGAAGAA 59.988 37.037 6.98 0.00 33.22 2.52
5847 6763 2.669364 CTCATGTGAGCAAAGCAAACC 58.331 47.619 0.00 0.00 35.13 3.27
5848 6764 2.030371 TCATGTGAGCAAAGCAAACCA 58.970 42.857 0.00 0.00 0.00 3.67
5849 6765 2.629137 TCATGTGAGCAAAGCAAACCAT 59.371 40.909 0.00 0.00 0.00 3.55
5926 6863 8.146479 AGCTTTTTAGCATTTTGAAAGGAAAG 57.854 30.769 0.00 0.00 37.25 2.62
5964 6918 6.430000 GTGTAATGTCCCTTAAAGCTTTGAGA 59.570 38.462 27.48 13.26 0.00 3.27
6059 7025 5.615289 AGTTTACTCTCAATCAGCTGTGTT 58.385 37.500 14.67 7.44 0.00 3.32
6081 7047 1.517257 CGTGCAGATGTCGGAGTCC 60.517 63.158 0.00 0.00 0.00 3.85
6084 7050 1.142748 GCAGATGTCGGAGTCCAGG 59.857 63.158 10.49 0.00 0.00 4.45
6108 7074 1.227497 GCAGGGAAGCGGATGAGAG 60.227 63.158 0.00 0.00 0.00 3.20
6110 7076 2.279784 GGGAAGCGGATGAGAGCG 60.280 66.667 0.00 0.00 38.61 5.03
6251 7229 6.692486 GGGGACATCGCCTCATATATATAAG 58.308 44.000 7.70 0.00 44.66 1.73
6322 7301 3.198068 GAGAAAGCAGAACAGTGACACA 58.802 45.455 8.59 0.00 0.00 3.72
6359 7339 1.003118 TGTAACAGATGGCCACCTGAC 59.997 52.381 34.76 22.16 34.65 3.51
6361 7341 1.136329 AACAGATGGCCACCTGACCT 61.136 55.000 34.76 14.46 34.65 3.85
6382 7362 7.178628 TGACCTTTTGCTGAACTATACTCTAGT 59.821 37.037 0.00 0.00 0.00 2.57
6383 7363 7.908453 ACCTTTTGCTGAACTATACTCTAGTT 58.092 34.615 0.00 0.00 40.15 2.24
6384 7364 9.032624 ACCTTTTGCTGAACTATACTCTAGTTA 57.967 33.333 0.00 0.00 37.83 2.24
6390 7370 9.015367 TGCTGAACTATACTCTAGTTATCATCC 57.985 37.037 0.00 0.00 37.83 3.51
6391 7371 8.463607 GCTGAACTATACTCTAGTTATCATCCC 58.536 40.741 0.00 0.00 37.83 3.85
6392 7372 9.747898 CTGAACTATACTCTAGTTATCATCCCT 57.252 37.037 0.00 0.00 37.83 4.20
6393 7373 9.521841 TGAACTATACTCTAGTTATCATCCCTG 57.478 37.037 0.00 0.00 37.83 4.45
6394 7374 9.523168 GAACTATACTCTAGTTATCATCCCTGT 57.477 37.037 0.00 0.00 37.83 4.00
6395 7375 9.884814 AACTATACTCTAGTTATCATCCCTGTT 57.115 33.333 0.00 0.00 36.14 3.16
6396 7376 9.303116 ACTATACTCTAGTTATCATCCCTGTTG 57.697 37.037 0.00 0.00 0.00 3.33
6397 7377 5.283457 ACTCTAGTTATCATCCCTGTTGC 57.717 43.478 0.00 0.00 0.00 4.17
6398 7378 4.716784 ACTCTAGTTATCATCCCTGTTGCA 59.283 41.667 0.00 0.00 0.00 4.08
6399 7379 5.367937 ACTCTAGTTATCATCCCTGTTGCAT 59.632 40.000 0.00 0.00 0.00 3.96
6400 7380 5.614308 TCTAGTTATCATCCCTGTTGCATG 58.386 41.667 0.00 0.00 0.00 4.06
6401 7381 3.559069 AGTTATCATCCCTGTTGCATGG 58.441 45.455 0.00 0.00 0.00 3.66
6402 7382 3.053395 AGTTATCATCCCTGTTGCATGGT 60.053 43.478 0.00 0.00 0.00 3.55
6403 7383 2.537633 ATCATCCCTGTTGCATGGTT 57.462 45.000 0.00 0.00 0.00 3.67
6404 7384 2.307496 TCATCCCTGTTGCATGGTTT 57.693 45.000 0.00 0.00 0.00 3.27
6405 7385 3.448093 TCATCCCTGTTGCATGGTTTA 57.552 42.857 0.00 0.00 0.00 2.01
6406 7386 3.979911 TCATCCCTGTTGCATGGTTTAT 58.020 40.909 0.00 0.00 0.00 1.40
6407 7387 3.953612 TCATCCCTGTTGCATGGTTTATC 59.046 43.478 0.00 0.00 0.00 1.75
6408 7388 3.737559 TCCCTGTTGCATGGTTTATCT 57.262 42.857 0.00 0.00 0.00 1.98
6409 7389 4.046286 TCCCTGTTGCATGGTTTATCTT 57.954 40.909 0.00 0.00 0.00 2.40
6410 7390 4.415596 TCCCTGTTGCATGGTTTATCTTT 58.584 39.130 0.00 0.00 0.00 2.52
6411 7391 4.220382 TCCCTGTTGCATGGTTTATCTTTG 59.780 41.667 0.00 0.00 0.00 2.77
6412 7392 3.928375 CCTGTTGCATGGTTTATCTTTGC 59.072 43.478 0.00 0.00 0.00 3.68
6413 7393 4.322198 CCTGTTGCATGGTTTATCTTTGCT 60.322 41.667 0.00 0.00 34.47 3.91
6414 7394 4.558178 TGTTGCATGGTTTATCTTTGCTG 58.442 39.130 0.00 0.00 34.47 4.41
6415 7395 4.280425 TGTTGCATGGTTTATCTTTGCTGA 59.720 37.500 0.00 0.00 34.47 4.26
6416 7396 5.221402 TGTTGCATGGTTTATCTTTGCTGAA 60.221 36.000 0.00 0.00 34.47 3.02
6417 7397 4.808558 TGCATGGTTTATCTTTGCTGAAC 58.191 39.130 0.00 0.00 34.47 3.18
6418 7398 4.523943 TGCATGGTTTATCTTTGCTGAACT 59.476 37.500 0.00 0.00 34.47 3.01
6419 7399 5.709631 TGCATGGTTTATCTTTGCTGAACTA 59.290 36.000 0.00 0.00 34.47 2.24
6420 7400 6.377996 TGCATGGTTTATCTTTGCTGAACTAT 59.622 34.615 0.00 0.00 34.47 2.12
6421 7401 7.555914 TGCATGGTTTATCTTTGCTGAACTATA 59.444 33.333 0.00 0.00 34.47 1.31
6422 7402 7.857885 GCATGGTTTATCTTTGCTGAACTATAC 59.142 37.037 0.00 0.00 0.00 1.47
6423 7403 9.113838 CATGGTTTATCTTTGCTGAACTATACT 57.886 33.333 0.00 0.00 0.00 2.12
6424 7404 8.718102 TGGTTTATCTTTGCTGAACTATACTC 57.282 34.615 0.00 0.00 0.00 2.59
6499 7479 2.170607 TGACTACCAGCTTTCCATAGGC 59.829 50.000 0.00 0.00 0.00 3.93
6500 7480 2.170607 GACTACCAGCTTTCCATAGGCA 59.829 50.000 0.00 0.00 0.00 4.75
6502 7482 2.134789 ACCAGCTTTCCATAGGCAAG 57.865 50.000 0.00 0.00 0.00 4.01
6587 7573 0.958382 GCACAACGCCCATCTGGTTA 60.958 55.000 0.00 0.00 36.04 2.85
6632 7619 3.437049 ACGACTTTAGCCAGAAAGCATTC 59.563 43.478 0.00 0.00 39.60 2.67
6635 7622 1.094785 TTAGCCAGAAAGCATTCGCC 58.905 50.000 0.00 0.00 40.63 5.54
6721 7711 1.608590 CCACCACCAATCTGTTGTCAC 59.391 52.381 0.00 0.00 33.36 3.67
6738 7728 3.262420 GTCACGCAGTAACAATCAGGAT 58.738 45.455 0.00 0.00 41.61 3.24
6739 7729 3.307242 GTCACGCAGTAACAATCAGGATC 59.693 47.826 0.00 0.00 41.61 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 1.803519 CTCGTGAGCCGCTTGAGAC 60.804 63.158 10.96 0.00 36.19 3.36
87 88 2.569134 GAGACTCGTGAGCCGCTT 59.431 61.111 0.00 0.00 36.19 4.68
101 102 3.961408 AGGGCTATAAGAAAAGCTCGAGA 59.039 43.478 18.75 0.00 44.24 4.04
202 203 2.179018 CAACAAATCCTGCCGCCG 59.821 61.111 0.00 0.00 0.00 6.46
257 287 5.512404 CGGCAAGATATAACCTACCAATGGA 60.512 44.000 6.16 0.00 0.00 3.41
335 367 6.092944 ACGGAAAAATTGCTGTATCGAACATA 59.907 34.615 0.00 0.00 37.50 2.29
500 563 3.566742 GTCCTCTTCGTCCTTATCTCTCC 59.433 52.174 0.00 0.00 0.00 3.71
564 627 4.444081 CGGTCGGAGTCCTCCCCT 62.444 72.222 7.77 0.00 46.96 4.79
584 647 2.329379 GCGGCGAGAGACTTTATATGG 58.671 52.381 12.98 0.00 36.51 2.74
1153 1291 3.257561 CGGCATTGGAGCGACGAG 61.258 66.667 0.00 0.00 34.64 4.18
1185 1326 3.708220 CTTCTCCTCCGGCTGCGAC 62.708 68.421 0.00 0.00 0.00 5.19
1324 1465 4.334759 TCGACCGATAGAACAGGACTAAAG 59.665 45.833 0.00 0.00 39.76 1.85
1342 1483 0.876342 GAACTGCCCGATGATCGACC 60.876 60.000 17.52 7.06 43.74 4.79
1418 1559 7.553044 ACAGGGAAGCAAAATAGTACAAGATAC 59.447 37.037 0.00 0.00 0.00 2.24
1604 1753 6.830114 ATTAAAACGTTGGAATCGCAAAAA 57.170 29.167 0.00 0.00 0.00 1.94
1647 1796 0.397114 CCAAATCAAGGGGGTAGCCC 60.397 60.000 22.54 22.54 44.51 5.19
1809 1958 5.523552 CGCCAGATTAGTGATGTTAATGTCA 59.476 40.000 0.00 0.00 0.00 3.58
1832 1981 0.533755 GATCATCCAGAACCCAGGCG 60.534 60.000 0.00 0.00 0.00 5.52
1877 2026 2.461695 GTCTCCTCATGTCCTTCCTCA 58.538 52.381 0.00 0.00 0.00 3.86
1883 2032 1.004862 TGAGACGTCTCCTCATGTCCT 59.995 52.381 36.01 4.11 42.20 3.85
1889 2038 5.977489 TTTTATCTTGAGACGTCTCCTCA 57.023 39.130 36.01 22.44 42.20 3.86
1898 2047 7.394641 ACCTTGAAGGGATTTTTATCTTGAGAC 59.605 37.037 16.78 0.00 40.58 3.36
1901 2050 7.178451 GGAACCTTGAAGGGATTTTTATCTTGA 59.822 37.037 16.78 0.00 40.58 3.02
1902 2051 7.039082 TGGAACCTTGAAGGGATTTTTATCTTG 60.039 37.037 16.78 0.00 40.58 3.02
1939 2088 0.612174 TGTCTCCTCTTGTCCCTCGG 60.612 60.000 0.00 0.00 0.00 4.63
1940 2089 1.407258 GATGTCTCCTCTTGTCCCTCG 59.593 57.143 0.00 0.00 0.00 4.63
1949 2098 1.550327 TGTCTTGCGATGTCTCCTCT 58.450 50.000 0.00 0.00 0.00 3.69
1961 2113 4.202253 ACCTTGAAGGGATTTTTGTCTTGC 60.202 41.667 16.78 0.00 40.58 4.01
1962 2114 5.535753 ACCTTGAAGGGATTTTTGTCTTG 57.464 39.130 16.78 0.00 40.58 3.02
1964 2116 4.588951 GGAACCTTGAAGGGATTTTTGTCT 59.411 41.667 16.78 0.00 40.58 3.41
2000 2152 2.546368 CGATGTCTCCTTCTCTACCTCG 59.454 54.545 0.00 0.00 0.00 4.63
2005 2157 3.378742 GTCTTGCGATGTCTCCTTCTCTA 59.621 47.826 0.00 0.00 0.00 2.43
2007 2159 2.094494 TGTCTTGCGATGTCTCCTTCTC 60.094 50.000 0.00 0.00 0.00 2.87
2009 2161 2.370281 TGTCTTGCGATGTCTCCTTC 57.630 50.000 0.00 0.00 0.00 3.46
2010 2162 2.839486 TTGTCTTGCGATGTCTCCTT 57.161 45.000 0.00 0.00 0.00 3.36
2021 2173 4.248058 CCTTGATGGGATTTTTGTCTTGC 58.752 43.478 0.00 0.00 0.00 4.01
2022 2174 5.473066 ACCTTGATGGGATTTTTGTCTTG 57.527 39.130 0.00 0.00 41.11 3.02
2025 2177 4.283212 TGGAACCTTGATGGGATTTTTGTC 59.717 41.667 0.00 0.00 41.11 3.18
2027 2179 4.322953 CCTGGAACCTTGATGGGATTTTTG 60.323 45.833 0.00 0.00 41.11 2.44
2028 2180 3.840078 CCTGGAACCTTGATGGGATTTTT 59.160 43.478 0.00 0.00 41.11 1.94
2030 2182 2.383338 ACCTGGAACCTTGATGGGATTT 59.617 45.455 0.00 0.00 41.11 2.17
2033 2185 0.991920 GACCTGGAACCTTGATGGGA 59.008 55.000 0.00 0.00 41.11 4.37
2034 2186 0.034089 GGACCTGGAACCTTGATGGG 60.034 60.000 0.00 0.00 41.11 4.00
2035 2187 0.698238 TGGACCTGGAACCTTGATGG 59.302 55.000 0.00 0.00 42.93 3.51
2036 2188 1.952367 GCTGGACCTGGAACCTTGATG 60.952 57.143 0.00 0.00 0.00 3.07
2037 2189 0.329596 GCTGGACCTGGAACCTTGAT 59.670 55.000 0.00 0.00 0.00 2.57
2050 2205 0.179097 GTCTTCCTCATCGGCTGGAC 60.179 60.000 0.00 0.00 0.00 4.02
2052 2207 0.250234 TTGTCTTCCTCATCGGCTGG 59.750 55.000 0.00 0.00 0.00 4.85
2060 2215 1.613925 CGTGTCTCCTTGTCTTCCTCA 59.386 52.381 0.00 0.00 0.00 3.86
2065 2220 0.471211 TCCCCGTGTCTCCTTGTCTT 60.471 55.000 0.00 0.00 0.00 3.01
2092 2247 0.771755 ACCTGGAACCTTGAAGGGAC 59.228 55.000 16.78 8.65 40.58 4.46
2125 2280 4.683432 GACAGGTCTGCCAGTCAC 57.317 61.111 4.62 0.00 46.67 3.67
2133 2288 4.778415 CCGGTCGCGACAGGTCTG 62.778 72.222 39.41 21.20 40.98 3.51
2144 2299 3.181967 CGCAAGAGCTTCCGGTCG 61.182 66.667 0.00 0.00 42.35 4.79
2267 2441 5.009610 ACAGTACCAGTAGCAAACAAAATGG 59.990 40.000 0.00 0.00 0.00 3.16
2341 2515 2.964464 AGATAGAGGGAGAGTGCATGTG 59.036 50.000 0.00 0.00 0.00 3.21
2405 2579 8.745837 CAAACAAAACTGAAATGTTAGCTACAG 58.254 33.333 0.00 0.00 40.83 2.74
2406 2580 8.247562 ACAAACAAAACTGAAATGTTAGCTACA 58.752 29.630 0.00 0.00 41.97 2.74
2407 2581 8.628882 ACAAACAAAACTGAAATGTTAGCTAC 57.371 30.769 0.00 0.00 36.33 3.58
2408 2582 9.296400 GAACAAACAAAACTGAAATGTTAGCTA 57.704 29.630 0.00 0.00 36.33 3.32
2409 2583 8.034804 AGAACAAACAAAACTGAAATGTTAGCT 58.965 29.630 0.00 0.00 36.33 3.32
2425 2599 3.146066 CCGAATCCTGGAGAACAAACAA 58.854 45.455 1.52 0.00 0.00 2.83
2535 2709 1.336702 TGACAAAATCCGCCACAATGC 60.337 47.619 0.00 0.00 0.00 3.56
2551 2725 2.971660 TTCGGACAACAGTTCTGACA 57.028 45.000 6.83 0.00 0.00 3.58
2698 2872 1.381191 TGCCTACCATCAGCCTCGA 60.381 57.895 0.00 0.00 0.00 4.04
2703 2877 2.482326 GGTTGTGCCTACCATCAGC 58.518 57.895 0.00 0.00 35.67 4.26
3146 3325 2.143925 GACACTAAGGGAACTGTGTGC 58.856 52.381 2.24 0.00 44.78 4.57
3158 3337 5.223382 TCTTTCAGAAGCTTCGACACTAAG 58.777 41.667 20.43 17.67 32.75 2.18
3233 3412 6.457257 GCTCGACAGTAGGTAAACTAGAAGAG 60.457 46.154 0.00 0.00 30.77 2.85
3260 3439 4.253685 ACACAACGGTTGATATGAAGAGG 58.746 43.478 26.39 5.83 0.00 3.69
3335 3514 2.029649 GTGTCGTAGGGAGCAGTAACAA 60.030 50.000 0.00 0.00 0.00 2.83
3389 3568 0.608640 ACTTTCTGGGGTAGAGCACG 59.391 55.000 0.00 0.00 36.61 5.34
3468 3647 6.127897 ACCACTGATTTAAGCAGTTTATGAGC 60.128 38.462 13.48 0.00 43.67 4.26
3517 3963 4.383052 CAGACTAAAACTCAGCTACACACG 59.617 45.833 0.00 0.00 0.00 4.49
3522 3968 8.488764 CAGTTAAACAGACTAAAACTCAGCTAC 58.511 37.037 0.00 0.00 0.00 3.58
3523 3969 8.418662 TCAGTTAAACAGACTAAAACTCAGCTA 58.581 33.333 0.00 0.00 0.00 3.32
3524 3970 7.272978 TCAGTTAAACAGACTAAAACTCAGCT 58.727 34.615 0.00 0.00 0.00 4.24
3526 3972 9.099454 AGTTCAGTTAAACAGACTAAAACTCAG 57.901 33.333 0.00 0.00 31.80 3.35
3663 4407 1.836166 CACAGGGATGAGTGGATGACT 59.164 52.381 0.00 0.00 37.76 3.41
3664 4408 1.833630 TCACAGGGATGAGTGGATGAC 59.166 52.381 0.00 0.00 36.43 3.06
3665 4409 2.252535 TCACAGGGATGAGTGGATGA 57.747 50.000 0.00 0.00 36.43 2.92
3666 4410 3.572632 AATCACAGGGATGAGTGGATG 57.427 47.619 0.00 0.00 36.02 3.51
3667 4411 4.662179 ACATAATCACAGGGATGAGTGGAT 59.338 41.667 0.00 0.00 36.02 3.41
3668 4412 4.040047 ACATAATCACAGGGATGAGTGGA 58.960 43.478 0.00 0.00 36.02 4.02
3669 4413 4.428294 ACATAATCACAGGGATGAGTGG 57.572 45.455 0.00 0.00 36.02 4.00
3670 4414 5.987953 CAGTACATAATCACAGGGATGAGTG 59.012 44.000 0.00 0.00 36.02 3.51
3671 4415 5.899547 TCAGTACATAATCACAGGGATGAGT 59.100 40.000 0.00 0.00 36.02 3.41
3672 4416 6.410942 TCAGTACATAATCACAGGGATGAG 57.589 41.667 0.00 0.00 36.02 2.90
3813 4557 2.625352 CCTCAGATTCAGACCTGGGAGA 60.625 54.545 0.00 0.00 32.77 3.71
3917 4664 7.510675 AGACAAATATTTAGGAACTGAGGGA 57.489 36.000 0.00 0.00 41.52 4.20
3918 4665 8.581253 AAAGACAAATATTTAGGAACTGAGGG 57.419 34.615 0.00 0.00 41.52 4.30
3936 4683 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
3937 4684 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
3941 4688 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
3942 4689 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
3943 4690 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
3944 4691 7.606456 GTGTGGTAGTCCATTTGAAATCTCTAA 59.394 37.037 0.00 0.00 46.20 2.10
3945 4692 7.103641 GTGTGGTAGTCCATTTGAAATCTCTA 58.896 38.462 0.00 0.00 46.20 2.43
3946 4693 5.940470 GTGTGGTAGTCCATTTGAAATCTCT 59.060 40.000 0.00 0.00 46.20 3.10
3947 4694 5.705441 TGTGTGGTAGTCCATTTGAAATCTC 59.295 40.000 0.00 0.00 46.20 2.75
3948 4695 5.473504 GTGTGTGGTAGTCCATTTGAAATCT 59.526 40.000 0.00 0.00 46.20 2.40
3949 4696 5.616866 CGTGTGTGGTAGTCCATTTGAAATC 60.617 44.000 0.00 0.00 46.20 2.17
3950 4697 4.215399 CGTGTGTGGTAGTCCATTTGAAAT 59.785 41.667 0.00 0.00 46.20 2.17
3951 4698 3.562141 CGTGTGTGGTAGTCCATTTGAAA 59.438 43.478 0.00 0.00 46.20 2.69
3952 4699 3.135225 CGTGTGTGGTAGTCCATTTGAA 58.865 45.455 0.00 0.00 46.20 2.69
3953 4700 2.549134 CCGTGTGTGGTAGTCCATTTGA 60.549 50.000 0.00 0.00 46.20 2.69
3954 4701 1.804151 CCGTGTGTGGTAGTCCATTTG 59.196 52.381 0.00 0.00 46.20 2.32
3955 4702 1.695242 TCCGTGTGTGGTAGTCCATTT 59.305 47.619 0.00 0.00 46.20 2.32
3956 4703 1.344065 TCCGTGTGTGGTAGTCCATT 58.656 50.000 0.00 0.00 46.20 3.16
3957 4704 1.207089 CATCCGTGTGTGGTAGTCCAT 59.793 52.381 0.00 0.00 46.20 3.41
3958 4705 0.606096 CATCCGTGTGTGGTAGTCCA 59.394 55.000 0.00 0.00 42.05 4.02
3959 4706 0.606604 ACATCCGTGTGTGGTAGTCC 59.393 55.000 0.00 0.00 37.14 3.85
3960 4707 3.795623 ATACATCCGTGTGTGGTAGTC 57.204 47.619 0.66 0.00 39.39 2.59
3961 4708 6.206243 GTCTATATACATCCGTGTGTGGTAGT 59.794 42.308 0.66 0.00 39.39 2.73
3962 4709 6.206048 TGTCTATATACATCCGTGTGTGGTAG 59.794 42.308 0.66 1.63 39.39 3.18
3963 4710 6.063404 TGTCTATATACATCCGTGTGTGGTA 58.937 40.000 0.66 0.00 39.39 3.25
3964 4711 4.891168 TGTCTATATACATCCGTGTGTGGT 59.109 41.667 0.66 0.00 39.39 4.16
3965 4712 5.447624 TGTCTATATACATCCGTGTGTGG 57.552 43.478 0.66 0.00 39.39 4.17
3966 4713 9.639601 AAATATGTCTATATACATCCGTGTGTG 57.360 33.333 7.00 0.00 40.52 3.82
4019 4766 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
4020 4767 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
4021 4768 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
4022 4769 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4023 4770 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4024 4771 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4025 4772 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4026 4773 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
4027 4774 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4028 4775 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4029 4776 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4030 4777 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
4031 4778 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
4032 4779 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
4033 4780 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
4034 4781 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
4035 4782 4.530710 AAGTGACTACATACGGAGCAAA 57.469 40.909 0.00 0.00 0.00 3.68
4036 4783 5.847111 ATAAGTGACTACATACGGAGCAA 57.153 39.130 0.00 0.00 0.00 3.91
4037 4784 5.358725 TCAATAAGTGACTACATACGGAGCA 59.641 40.000 0.00 0.00 0.00 4.26
4038 4785 5.828747 TCAATAAGTGACTACATACGGAGC 58.171 41.667 0.00 0.00 0.00 4.70
4039 4786 8.873215 ATTTCAATAAGTGACTACATACGGAG 57.127 34.615 0.00 0.00 35.39 4.63
4040 4787 8.692710 AGATTTCAATAAGTGACTACATACGGA 58.307 33.333 0.00 0.00 35.39 4.69
4041 4788 8.873215 AGATTTCAATAAGTGACTACATACGG 57.127 34.615 0.00 0.00 35.39 4.02
4042 4789 8.682895 CGAGATTTCAATAAGTGACTACATACG 58.317 37.037 0.00 0.00 35.39 3.06
4043 4790 9.731819 TCGAGATTTCAATAAGTGACTACATAC 57.268 33.333 0.00 0.00 35.39 2.39
4044 4791 9.952188 CTCGAGATTTCAATAAGTGACTACATA 57.048 33.333 6.58 0.00 35.39 2.29
4045 4792 8.687242 TCTCGAGATTTCAATAAGTGACTACAT 58.313 33.333 12.08 0.00 35.39 2.29
4046 4793 8.051901 TCTCGAGATTTCAATAAGTGACTACA 57.948 34.615 12.08 0.00 35.39 2.74
4047 4794 8.912787 TTCTCGAGATTTCAATAAGTGACTAC 57.087 34.615 17.44 0.00 35.39 2.73
4048 4795 9.574458 CTTTCTCGAGATTTCAATAAGTGACTA 57.426 33.333 17.44 0.00 35.39 2.59
4049 4796 8.307483 TCTTTCTCGAGATTTCAATAAGTGACT 58.693 33.333 17.44 0.00 35.39 3.41
4050 4797 8.376942 GTCTTTCTCGAGATTTCAATAAGTGAC 58.623 37.037 17.44 7.00 35.39 3.67
4051 4798 8.088365 TGTCTTTCTCGAGATTTCAATAAGTGA 58.912 33.333 17.44 3.68 0.00 3.41
4052 4799 8.244494 TGTCTTTCTCGAGATTTCAATAAGTG 57.756 34.615 17.44 0.00 0.00 3.16
4053 4800 8.833231 TTGTCTTTCTCGAGATTTCAATAAGT 57.167 30.769 17.44 0.00 0.00 2.24
4064 4811 9.367444 GTTCCTAAATATTTGTCTTTCTCGAGA 57.633 33.333 12.08 12.08 0.00 4.04
4065 4812 8.321716 CGTTCCTAAATATTTGTCTTTCTCGAG 58.678 37.037 11.05 5.93 0.00 4.04
4066 4813 7.277098 CCGTTCCTAAATATTTGTCTTTCTCGA 59.723 37.037 11.05 0.00 0.00 4.04
4067 4814 7.277098 TCCGTTCCTAAATATTTGTCTTTCTCG 59.723 37.037 11.05 5.67 0.00 4.04
4068 4815 8.488651 TCCGTTCCTAAATATTTGTCTTTCTC 57.511 34.615 11.05 0.00 0.00 2.87
4069 4816 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
4070 4817 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
4071 4818 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4072 4819 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4073 4820 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4074 4821 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
4075 4822 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4076 4823 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
4077 4824 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4078 4825 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
4079 4826 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
4080 4827 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
4081 4828 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
4082 4829 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
4083 4830 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
4084 4831 2.242965 TGATGTACTCCCTCCGTTCCTA 59.757 50.000 0.00 0.00 0.00 2.94
4085 4832 1.006758 TGATGTACTCCCTCCGTTCCT 59.993 52.381 0.00 0.00 0.00 3.36
4086 4833 1.409427 CTGATGTACTCCCTCCGTTCC 59.591 57.143 0.00 0.00 0.00 3.62
4087 4834 2.100989 ACTGATGTACTCCCTCCGTTC 58.899 52.381 0.00 0.00 0.00 3.95
4088 4835 2.233305 ACTGATGTACTCCCTCCGTT 57.767 50.000 0.00 0.00 0.00 4.44
4089 4836 3.488363 GATACTGATGTACTCCCTCCGT 58.512 50.000 0.00 0.00 0.00 4.69
4090 4837 2.484651 CGATACTGATGTACTCCCTCCG 59.515 54.545 0.00 0.00 0.00 4.63
4091 4838 3.488363 ACGATACTGATGTACTCCCTCC 58.512 50.000 0.00 0.00 0.00 4.30
4092 4839 4.822896 AGAACGATACTGATGTACTCCCTC 59.177 45.833 0.00 0.00 0.00 4.30
4093 4840 4.580995 CAGAACGATACTGATGTACTCCCT 59.419 45.833 0.00 0.00 37.54 4.20
4094 4841 4.579340 TCAGAACGATACTGATGTACTCCC 59.421 45.833 0.00 0.00 39.10 4.30
4095 4842 5.297278 AGTCAGAACGATACTGATGTACTCC 59.703 44.000 12.07 0.00 44.41 3.85
4096 4843 6.366315 AGTCAGAACGATACTGATGTACTC 57.634 41.667 12.07 0.00 44.41 2.59
4097 4844 6.404844 CCAAGTCAGAACGATACTGATGTACT 60.405 42.308 12.07 5.09 44.41 2.73
4098 4845 5.744345 CCAAGTCAGAACGATACTGATGTAC 59.256 44.000 12.07 0.00 44.41 2.90
4099 4846 5.417894 ACCAAGTCAGAACGATACTGATGTA 59.582 40.000 12.07 0.00 44.41 2.29
4100 4847 4.220821 ACCAAGTCAGAACGATACTGATGT 59.779 41.667 12.07 6.89 44.41 3.06
4101 4848 4.748892 ACCAAGTCAGAACGATACTGATG 58.251 43.478 12.07 8.55 44.41 3.07
4185 4939 0.379669 CCAATCTGTCCGAGCAATGC 59.620 55.000 0.00 0.00 0.00 3.56
4263 5017 8.739972 ACAACCTCAATTTTGGTATAAGATGAC 58.260 33.333 0.09 0.00 35.17 3.06
4516 5270 2.883026 TGGGTGGTTGGGAAATACAAG 58.117 47.619 0.00 0.00 0.00 3.16
4519 5273 2.884320 ACTTGGGTGGTTGGGAAATAC 58.116 47.619 0.00 0.00 0.00 1.89
4734 5493 5.313280 TGGAAGTTTAGAGCCAGGTAAAA 57.687 39.130 0.00 0.00 0.00 1.52
4750 5509 2.165167 CACAATCTGCACCATGGAAGT 58.835 47.619 21.47 0.00 0.00 3.01
4867 5629 7.703058 AATAATCCGACAGAAACATTTCCTT 57.297 32.000 0.68 0.00 37.92 3.36
4868 5630 7.703058 AAATAATCCGACAGAAACATTTCCT 57.297 32.000 0.68 0.00 37.92 3.36
4869 5631 8.026607 TCAAAATAATCCGACAGAAACATTTCC 58.973 33.333 0.68 0.00 37.92 3.13
4878 5640 7.628366 GCCAATTCTTCAAAATAATCCGACAGA 60.628 37.037 0.00 0.00 0.00 3.41
5485 6256 2.822561 TGATATAGAAGGAGCAGGCTCG 59.177 50.000 14.56 0.00 43.59 5.03
5574 6418 6.974965 ACAAAAAGAGACAAGCCTCATAAAG 58.025 36.000 0.00 0.00 35.68 1.85
5600 6444 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
5601 6445 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
5602 6446 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
5603 6447 9.710900 ATCTTCTTCTTCTTCTTCTTCTTCTTC 57.289 33.333 0.00 0.00 0.00 2.87
5604 6448 9.492973 CATCTTCTTCTTCTTCTTCTTCTTCTT 57.507 33.333 0.00 0.00 0.00 2.52
5605 6449 8.096414 CCATCTTCTTCTTCTTCTTCTTCTTCT 58.904 37.037 0.00 0.00 0.00 2.85
5606 6450 7.334171 CCCATCTTCTTCTTCTTCTTCTTCTTC 59.666 40.741 0.00 0.00 0.00 2.87
5607 6451 7.017056 TCCCATCTTCTTCTTCTTCTTCTTCTT 59.983 37.037 0.00 0.00 0.00 2.52
5608 6452 6.500049 TCCCATCTTCTTCTTCTTCTTCTTCT 59.500 38.462 0.00 0.00 0.00 2.85
5769 6613 4.603131 ACCATGCCAGTTTTGTATCTGAT 58.397 39.130 0.00 0.00 34.02 2.90
5770 6614 4.032960 ACCATGCCAGTTTTGTATCTGA 57.967 40.909 0.00 0.00 34.02 3.27
5771 6615 4.789012 AACCATGCCAGTTTTGTATCTG 57.211 40.909 0.00 0.00 0.00 2.90
5782 6626 0.899720 AGCCAATGAAACCATGCCAG 59.100 50.000 0.00 0.00 0.00 4.85
5847 6763 9.799106 ATATAAAAGGGGACTGAATGACTTATG 57.201 33.333 0.00 0.00 42.68 1.90
5926 6863 4.092968 GGACATTACACGTTTCATCAGTCC 59.907 45.833 0.00 0.00 35.57 3.85
5975 6929 2.632512 CAAAATTGCAGTGTTACCCCCT 59.367 45.455 0.00 0.00 0.00 4.79
5979 6933 3.245048 GCACACAAAATTGCAGTGTTACC 59.755 43.478 5.98 0.00 43.40 2.85
5980 6934 3.061271 CGCACACAAAATTGCAGTGTTAC 60.061 43.478 5.98 1.94 43.40 2.50
6059 7025 4.794439 CCGACATCTGCACGCGGA 62.794 66.667 12.47 2.45 44.43 5.54
6081 7047 2.271497 CTTCCCTGCTCTGGCCTG 59.729 66.667 3.32 2.92 37.74 4.85
6129 7095 0.667487 TTCTGCTTCTTCGCCGTCAG 60.667 55.000 0.00 0.00 0.00 3.51
6322 7301 5.971763 TGTTACAAGTGTCCAAAAATTGCT 58.028 33.333 0.00 0.00 0.00 3.91
6386 7366 3.956199 AGATAAACCATGCAACAGGGATG 59.044 43.478 5.13 0.00 44.27 3.51
6387 7367 4.255510 AGATAAACCATGCAACAGGGAT 57.744 40.909 5.13 0.00 37.52 3.85
6388 7368 3.737559 AGATAAACCATGCAACAGGGA 57.262 42.857 5.13 0.00 37.52 4.20
6389 7369 4.497300 CAAAGATAAACCATGCAACAGGG 58.503 43.478 7.93 0.00 41.50 4.45
6390 7370 3.928375 GCAAAGATAAACCATGCAACAGG 59.072 43.478 0.00 0.00 37.00 4.00
6391 7371 4.624024 CAGCAAAGATAAACCATGCAACAG 59.376 41.667 0.00 0.00 39.42 3.16
6392 7372 4.280425 TCAGCAAAGATAAACCATGCAACA 59.720 37.500 0.00 0.00 39.42 3.33
6393 7373 4.808558 TCAGCAAAGATAAACCATGCAAC 58.191 39.130 0.00 0.00 39.42 4.17
6394 7374 5.010922 AGTTCAGCAAAGATAAACCATGCAA 59.989 36.000 0.00 0.00 39.42 4.08
6395 7375 4.523943 AGTTCAGCAAAGATAAACCATGCA 59.476 37.500 0.00 0.00 39.42 3.96
6396 7376 5.064441 AGTTCAGCAAAGATAAACCATGC 57.936 39.130 0.00 0.00 37.28 4.06
6397 7377 9.113838 AGTATAGTTCAGCAAAGATAAACCATG 57.886 33.333 0.00 0.00 0.00 3.66
6398 7378 9.331282 GAGTATAGTTCAGCAAAGATAAACCAT 57.669 33.333 0.00 0.00 0.00 3.55
6399 7379 8.540388 AGAGTATAGTTCAGCAAAGATAAACCA 58.460 33.333 0.00 0.00 0.00 3.67
6400 7380 8.950208 AGAGTATAGTTCAGCAAAGATAAACC 57.050 34.615 0.00 0.00 0.00 3.27
6410 7390 9.015367 GGATGATAACTAGAGTATAGTTCAGCA 57.985 37.037 13.29 10.44 38.55 4.41
6411 7391 8.463607 GGGATGATAACTAGAGTATAGTTCAGC 58.536 40.741 13.29 9.40 38.55 4.26
6412 7392 9.747898 AGGGATGATAACTAGAGTATAGTTCAG 57.252 37.037 13.29 0.00 38.55 3.02
6413 7393 9.521841 CAGGGATGATAACTAGAGTATAGTTCA 57.478 37.037 13.29 7.51 38.55 3.18
6414 7394 9.523168 ACAGGGATGATAACTAGAGTATAGTTC 57.477 37.037 13.29 1.91 38.55 3.01
6415 7395 9.884814 AACAGGGATGATAACTAGAGTATAGTT 57.115 33.333 14.27 14.27 40.48 2.24
6416 7396 9.303116 CAACAGGGATGATAACTAGAGTATAGT 57.697 37.037 0.00 0.00 0.00 2.12
6417 7397 8.247562 GCAACAGGGATGATAACTAGAGTATAG 58.752 40.741 0.00 0.00 0.00 1.31
6418 7398 7.728532 TGCAACAGGGATGATAACTAGAGTATA 59.271 37.037 0.00 0.00 0.00 1.47
6419 7399 6.554982 TGCAACAGGGATGATAACTAGAGTAT 59.445 38.462 0.00 0.00 0.00 2.12
6420 7400 5.897250 TGCAACAGGGATGATAACTAGAGTA 59.103 40.000 0.00 0.00 0.00 2.59
6421 7401 4.716784 TGCAACAGGGATGATAACTAGAGT 59.283 41.667 0.00 0.00 0.00 3.24
6422 7402 5.282055 TGCAACAGGGATGATAACTAGAG 57.718 43.478 0.00 0.00 0.00 2.43
6423 7403 5.894298 ATGCAACAGGGATGATAACTAGA 57.106 39.130 0.00 0.00 0.00 2.43
6499 7479 1.933853 GGTTATCAGTACAGGCGCTTG 59.066 52.381 19.01 19.01 0.00 4.01
6500 7480 1.553248 TGGTTATCAGTACAGGCGCTT 59.447 47.619 7.64 0.00 0.00 4.68
6502 7482 2.240493 ATGGTTATCAGTACAGGCGC 57.760 50.000 0.00 0.00 0.00 6.53
6587 7573 1.981256 AGCATTTGGAGTTTCGTGGT 58.019 45.000 0.00 0.00 0.00 4.16
6632 7619 6.261826 AGAGAAAGAATGAGGATTTTATGGCG 59.738 38.462 0.00 0.00 0.00 5.69
6635 7622 8.768955 CGGTAGAGAAAGAATGAGGATTTTATG 58.231 37.037 0.00 0.00 0.00 1.90
6721 7711 1.860950 CCGATCCTGATTGTTACTGCG 59.139 52.381 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.