Multiple sequence alignment - TraesCS1D01G195800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G195800 chr1D 100.000 7635 0 0 1 7635 275149612 275141978 0.000000e+00 14100.0
1 TraesCS1D01G195800 chr1A 96.421 3521 91 15 737 4253 347647101 347643612 0.000000e+00 5771.0
2 TraesCS1D01G195800 chr1A 96.128 2118 53 13 5010 7120 347642223 347640128 0.000000e+00 3430.0
3 TraesCS1D01G195800 chr1A 97.038 709 12 3 4256 4955 347642930 347642222 0.000000e+00 1184.0
4 TraesCS1D01G195800 chr1A 88.330 437 24 8 7201 7635 347640130 347639719 4.110000e-137 499.0
5 TraesCS1D01G195800 chr1B 93.443 2791 128 28 4328 7083 374341954 374339184 0.000000e+00 4089.0
6 TraesCS1D01G195800 chr1B 95.777 2439 71 12 788 3216 374346240 374343824 0.000000e+00 3904.0
7 TraesCS1D01G195800 chr1B 94.343 990 34 12 3279 4247 374343823 374342835 0.000000e+00 1498.0
8 TraesCS1D01G195800 chr1B 98.734 79 1 0 4255 4333 374342142 374342064 2.870000e-29 141.0
9 TraesCS1D01G195800 chr1B 82.317 164 11 9 7201 7360 374339184 374339035 8.040000e-25 126.0
10 TraesCS1D01G195800 chr1B 79.012 162 31 1 7426 7584 433418858 433418697 2.910000e-19 108.0
11 TraesCS1D01G195800 chr6B 85.559 734 105 1 1 734 232172191 232172923 0.000000e+00 767.0
12 TraesCS1D01G195800 chr6B 79.371 286 47 9 3388 3672 620881762 620882036 2.810000e-44 191.0
13 TraesCS1D01G195800 chr6A 78.931 318 51 12 3358 3672 558099748 558100052 1.300000e-47 202.0
14 TraesCS1D01G195800 chr6D 79.655 290 50 7 3388 3676 412426946 412427227 4.670000e-47 200.0
15 TraesCS1D01G195800 chr7D 96.703 91 3 0 7113 7203 46795837 46795747 1.330000e-32 152.0
16 TraesCS1D01G195800 chr7D 97.701 87 2 0 7118 7204 146384058 146384144 4.770000e-32 150.0
17 TraesCS1D01G195800 chr4D 96.703 91 3 0 7116 7206 133475411 133475321 1.330000e-32 152.0
18 TraesCS1D01G195800 chr5D 97.647 85 2 0 7118 7202 40708544 40708628 6.170000e-31 147.0
19 TraesCS1D01G195800 chr7B 96.512 86 3 0 7118 7203 22814062 22813977 7.990000e-30 143.0
20 TraesCS1D01G195800 chr7B 93.478 92 6 0 7114 7205 687063406 687063315 3.720000e-28 137.0
21 TraesCS1D01G195800 chr7B 84.733 131 19 1 7449 7579 410647693 410647564 6.220000e-26 130.0
22 TraesCS1D01G195800 chr2B 90.291 103 10 0 7117 7219 58293707 58293809 1.340000e-27 135.0
23 TraesCS1D01G195800 chr2B 89.423 104 11 0 7113 7216 774081606 774081709 1.730000e-26 132.0
24 TraesCS1D01G195800 chr2B 89.320 103 11 0 7117 7219 58098929 58099031 6.220000e-26 130.0
25 TraesCS1D01G195800 chr7A 78.431 153 30 2 7430 7580 239217142 239216991 6.310000e-16 97.1
26 TraesCS1D01G195800 chr4A 79.577 142 22 5 7447 7584 696536960 696537098 2.270000e-15 95.3
27 TraesCS1D01G195800 chr4A 79.286 140 26 2 7447 7584 696577069 696577207 2.270000e-15 95.3
28 TraesCS1D01G195800 chr3B 79.231 130 22 4 7450 7577 201325448 201325574 1.370000e-12 86.1
29 TraesCS1D01G195800 chr3B 89.091 55 5 1 7217 7271 466285000 466284947 4.940000e-07 67.6
30 TraesCS1D01G195800 chr3D 95.349 43 1 1 7211 7253 525854084 525854125 4.940000e-07 67.6
31 TraesCS1D01G195800 chr2D 85.714 63 9 0 7452 7514 115930454 115930516 4.940000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G195800 chr1D 275141978 275149612 7634 True 14100.0 14100 100.00000 1 7635 1 chr1D.!!$R1 7634
1 TraesCS1D01G195800 chr1A 347639719 347647101 7382 True 2721.0 5771 94.47925 737 7635 4 chr1A.!!$R1 6898
2 TraesCS1D01G195800 chr1B 374339035 374346240 7205 True 1951.6 4089 92.92280 788 7360 5 chr1B.!!$R2 6572
3 TraesCS1D01G195800 chr6B 232172191 232172923 732 False 767.0 767 85.55900 1 734 1 chr6B.!!$F1 733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
672 673 0.036483 TAGGCTGATGCGCAGTTTGA 60.036 50.000 18.32 0.00 46.62 2.69 F
676 677 0.096628 CTGATGCGCAGTTTGAGCTC 59.903 55.000 18.32 6.82 43.72 4.09 F
928 929 0.664466 CGTCTGAACTCTGAAGCGCA 60.664 55.000 11.47 0.00 0.00 6.09 F
2367 2378 0.949397 GAACACCGTCTTCCCCAAAC 59.051 55.000 0.00 0.00 0.00 2.93 F
2378 2389 1.200519 TCCCCAAACTGGAGGTATCG 58.799 55.000 0.00 0.00 40.96 2.92 F
2724 2737 1.315690 CCAGCCTCATAGCACAATGG 58.684 55.000 0.00 0.00 34.23 3.16 F
3026 3040 1.851304 TGGGGATCATTGCCAGTTTC 58.149 50.000 0.00 0.00 34.36 2.78 F
4201 4237 2.621070 AGGGAAGAGGTTCAGCTAACA 58.379 47.619 0.00 0.00 40.08 2.41 F
4709 5555 2.890945 GCATTTTATGGGGGCGTAAGAT 59.109 45.455 0.00 0.00 43.02 2.40 F
5339 6194 3.367292 CGTGCCATGCTTATTCAGGTTTT 60.367 43.478 0.00 0.00 0.00 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1518 1520 2.404923 TCACAAACAAGGAACACCGA 57.595 45.000 0.00 0.0 0.00 4.69 R
2367 2378 3.248602 GCATTTGTAAGCGATACCTCCAG 59.751 47.826 0.00 0.0 33.27 3.86 R
2699 2712 1.762957 GTGCTATGAGGCTGGGAAGTA 59.237 52.381 0.00 0.0 0.00 2.24 R
3685 3715 3.382083 ACCAGAACCAACCTGAAAAGT 57.618 42.857 0.00 0.0 33.65 2.66 R
4201 4237 4.147321 ACAACCTGTGCAATGATTCTTCT 58.853 39.130 0.00 0.0 0.00 2.85 R
4588 5430 1.478654 GGCAGAACAGGAAGGTGGAAA 60.479 52.381 0.00 0.0 0.00 3.13 R
5004 5859 6.602803 TGGATGCAATTGTAGATGTATGTTGT 59.397 34.615 7.40 0.0 0.00 3.32 R
6118 6983 0.893727 GTTACCCACCAACAGGCCAG 60.894 60.000 5.01 0.0 0.00 4.85 R
6334 7205 1.195115 ATTTACAGCTCGCCTCCTCA 58.805 50.000 0.00 0.0 0.00 3.86 R
7018 7892 0.761802 GCCCTTCATCCTCGGAATCT 59.238 55.000 0.00 0.0 0.00 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.046864 CGAAGAGGGCTCTGTCGGA 61.047 63.158 8.16 0.00 40.36 4.55
32 33 0.529833 CTCTGTCGGAGCTGTCACAT 59.470 55.000 0.00 0.00 35.08 3.21
41 42 3.482809 CTGTCACATGGCAGCTCG 58.517 61.111 0.00 0.00 41.19 5.03
46 47 4.101448 ACATGGCAGCTCGGACCC 62.101 66.667 0.00 0.00 0.00 4.46
47 48 3.790437 CATGGCAGCTCGGACCCT 61.790 66.667 0.00 0.00 0.00 4.34
54 55 1.229209 AGCTCGGACCCTTTCCAGA 60.229 57.895 0.00 0.00 46.29 3.86
57 58 0.533032 CTCGGACCCTTTCCAGAGTC 59.467 60.000 0.00 0.00 46.29 3.36
62 63 2.558800 GGACCCTTTCCAGAGTCTCTCT 60.559 54.545 0.00 0.00 45.10 3.10
77 78 2.040813 TCTCTCTTCATTTTGCCAGGCT 59.959 45.455 14.15 0.00 0.00 4.58
79 80 3.614092 TCTCTTCATTTTGCCAGGCTAG 58.386 45.455 14.15 0.00 0.00 3.42
83 84 1.117150 CATTTTGCCAGGCTAGCCAT 58.883 50.000 34.70 17.45 38.92 4.40
91 92 1.609061 CCAGGCTAGCCATAACCATCG 60.609 57.143 34.70 11.06 38.92 3.84
116 117 3.791973 CGTAGAGCACTGGAGAATCTT 57.208 47.619 0.00 0.00 33.73 2.40
122 123 1.407989 GCACTGGAGAATCTTCCCAGG 60.408 57.143 18.58 10.71 43.74 4.45
130 131 4.164221 GGAGAATCTTCCCAGGTCATGTAA 59.836 45.833 0.00 0.00 33.73 2.41
131 132 5.339200 GGAGAATCTTCCCAGGTCATGTAAA 60.339 44.000 0.00 0.00 33.73 2.01
137 138 2.504175 TCCCAGGTCATGTAAACCTAGC 59.496 50.000 4.35 0.00 45.48 3.42
146 147 3.818295 TGTAAACCTAGCCCACCATTT 57.182 42.857 0.00 0.00 0.00 2.32
153 154 3.332485 ACCTAGCCCACCATTTTCTGTTA 59.668 43.478 0.00 0.00 0.00 2.41
197 198 1.447317 CTTTGCAGTGTCCGGCAGTT 61.447 55.000 0.00 0.00 42.72 3.16
203 204 0.542232 AGTGTCCGGCAGTTAGGTCT 60.542 55.000 0.00 0.00 0.00 3.85
221 222 2.294512 GTCTTTTTCTTGTGCCCAGAGG 59.705 50.000 0.00 0.00 0.00 3.69
225 226 1.981256 TTCTTGTGCCCAGAGGAAAC 58.019 50.000 0.00 0.00 33.47 2.78
245 246 0.652592 GGCGACGGATCTTGTCAATG 59.347 55.000 15.61 4.44 36.11 2.82
257 258 6.349944 GGATCTTGTCAATGTCTTTGAGCAAT 60.350 38.462 1.54 0.00 44.89 3.56
258 259 6.005583 TCTTGTCAATGTCTTTGAGCAATC 57.994 37.500 1.54 0.00 44.89 2.67
268 269 1.167851 TTGAGCAATCTCTTTGGCGG 58.832 50.000 0.00 0.00 40.03 6.13
271 272 1.021390 AGCAATCTCTTTGGCGGTCG 61.021 55.000 0.00 0.00 35.75 4.79
283 284 3.108289 CGGTCGCAGCACAGACAG 61.108 66.667 7.56 0.71 39.01 3.51
320 321 2.492090 GAGAGCACGCATCGGACT 59.508 61.111 0.00 0.00 0.00 3.85
323 324 0.747255 AGAGCACGCATCGGACTAAT 59.253 50.000 0.00 0.00 0.00 1.73
333 334 4.308265 GCATCGGACTAATACCCTTCTTC 58.692 47.826 0.00 0.00 0.00 2.87
338 339 1.411612 ACTAATACCCTTCTTCCGGCG 59.588 52.381 0.00 0.00 0.00 6.46
341 342 0.906775 ATACCCTTCTTCCGGCGAAA 59.093 50.000 9.30 0.00 0.00 3.46
343 344 1.295423 CCCTTCTTCCGGCGAAAGA 59.705 57.895 3.86 3.86 0.00 2.52
344 345 0.107654 CCCTTCTTCCGGCGAAAGAT 60.108 55.000 9.97 0.00 33.01 2.40
353 354 5.243060 TCTTCCGGCGAAAGATATCAATCTA 59.757 40.000 3.86 0.00 41.81 1.98
365 366 6.525629 AGATATCAATCTACCTTTCCAACCG 58.474 40.000 5.32 0.00 40.82 4.44
383 384 1.876156 CCGGCCAATCTTGCTCTAATC 59.124 52.381 2.24 0.00 0.00 1.75
386 387 2.485479 GGCCAATCTTGCTCTAATCCGA 60.485 50.000 0.00 0.00 0.00 4.55
387 388 3.406764 GCCAATCTTGCTCTAATCCGAT 58.593 45.455 0.00 0.00 0.00 4.18
404 405 9.661187 CTAATCCGATCAAGAATGAATTGAAAG 57.339 33.333 0.00 0.00 39.92 2.62
406 407 6.845302 TCCGATCAAGAATGAATTGAAAGTG 58.155 36.000 0.00 0.00 39.92 3.16
422 423 4.278669 TGAAAGTGAACTAGTCTCGCTCTT 59.721 41.667 16.34 13.44 32.51 2.85
425 426 2.093106 TGAACTAGTCTCGCTCTTCCC 58.907 52.381 0.00 0.00 0.00 3.97
435 436 1.144936 GCTCTTCCCAGGGTGATCG 59.855 63.158 5.01 0.00 0.00 3.69
440 441 2.438434 CCCAGGGTGATCGGCAAC 60.438 66.667 0.00 0.00 0.00 4.17
446 447 2.208527 GGTGATCGGCAACCCTAGA 58.791 57.895 0.00 0.00 0.00 2.43
463 464 5.073691 ACCCTAGATATTTGATGGGGAACTG 59.926 44.000 0.00 0.00 38.94 3.16
473 474 0.182537 TGGGGAACTGTGTTGTCTGG 59.817 55.000 0.00 0.00 0.00 3.86
482 483 1.341482 TGTGTTGTCTGGCCTCCAAAA 60.341 47.619 3.32 0.00 30.80 2.44
483 484 1.963515 GTGTTGTCTGGCCTCCAAAAT 59.036 47.619 3.32 0.00 30.80 1.82
484 485 2.365293 GTGTTGTCTGGCCTCCAAAATT 59.635 45.455 3.32 0.00 30.80 1.82
485 486 3.037549 TGTTGTCTGGCCTCCAAAATTT 58.962 40.909 3.32 0.00 30.80 1.82
486 487 3.454082 TGTTGTCTGGCCTCCAAAATTTT 59.546 39.130 3.32 0.00 30.80 1.82
487 488 3.749665 TGTCTGGCCTCCAAAATTTTG 57.250 42.857 21.65 21.65 37.90 2.44
488 489 2.224257 TGTCTGGCCTCCAAAATTTTGC 60.224 45.455 22.90 12.84 36.86 3.68
489 490 2.045524 TCTGGCCTCCAAAATTTTGCA 58.954 42.857 22.90 14.54 36.86 4.08
490 491 2.037511 TCTGGCCTCCAAAATTTTGCAG 59.962 45.455 22.90 21.53 36.86 4.41
491 492 1.072015 TGGCCTCCAAAATTTTGCAGG 59.928 47.619 29.38 29.38 46.64 4.85
492 493 1.347378 GGCCTCCAAAATTTTGCAGGA 59.653 47.619 35.17 21.79 46.82 3.86
493 494 2.026915 GGCCTCCAAAATTTTGCAGGAT 60.027 45.455 35.17 0.00 46.82 3.24
494 495 3.559811 GGCCTCCAAAATTTTGCAGGATT 60.560 43.478 35.17 0.00 46.82 3.01
495 496 4.074259 GCCTCCAAAATTTTGCAGGATTT 58.926 39.130 35.17 0.00 46.82 2.17
496 497 4.520111 GCCTCCAAAATTTTGCAGGATTTT 59.480 37.500 35.17 13.31 46.82 1.82
497 498 5.009911 GCCTCCAAAATTTTGCAGGATTTTT 59.990 36.000 35.17 8.36 46.82 1.94
516 517 5.809719 TTTTTGGAGGTTTTTGTCATTGC 57.190 34.783 0.00 0.00 0.00 3.56
517 518 4.478206 TTTGGAGGTTTTTGTCATTGCA 57.522 36.364 0.00 0.00 0.00 4.08
518 519 3.451141 TGGAGGTTTTTGTCATTGCAC 57.549 42.857 0.00 0.00 0.00 4.57
519 520 2.102252 TGGAGGTTTTTGTCATTGCACC 59.898 45.455 0.00 0.00 0.00 5.01
520 521 2.365293 GGAGGTTTTTGTCATTGCACCT 59.635 45.455 0.00 0.00 37.35 4.00
521 522 3.383761 GAGGTTTTTGTCATTGCACCTG 58.616 45.455 0.00 0.00 34.67 4.00
522 523 3.030291 AGGTTTTTGTCATTGCACCTGA 58.970 40.909 0.00 0.00 33.22 3.86
523 524 3.642848 AGGTTTTTGTCATTGCACCTGAT 59.357 39.130 1.74 0.00 33.22 2.90
524 525 4.101430 AGGTTTTTGTCATTGCACCTGATT 59.899 37.500 1.74 0.00 33.22 2.57
525 526 4.211794 GGTTTTTGTCATTGCACCTGATTG 59.788 41.667 1.74 0.00 0.00 2.67
526 527 4.933505 TTTTGTCATTGCACCTGATTGA 57.066 36.364 1.74 0.00 0.00 2.57
527 528 3.921119 TTGTCATTGCACCTGATTGAC 57.079 42.857 1.74 2.74 37.73 3.18
528 529 1.805943 TGTCATTGCACCTGATTGACG 59.194 47.619 1.74 0.00 39.58 4.35
529 530 1.806542 GTCATTGCACCTGATTGACGT 59.193 47.619 1.74 0.00 0.00 4.34
530 531 1.805943 TCATTGCACCTGATTGACGTG 59.194 47.619 0.00 0.00 0.00 4.49
531 532 1.805943 CATTGCACCTGATTGACGTGA 59.194 47.619 0.00 0.00 0.00 4.35
532 533 2.183478 TTGCACCTGATTGACGTGAT 57.817 45.000 0.00 0.00 0.00 3.06
533 534 1.725641 TGCACCTGATTGACGTGATC 58.274 50.000 0.00 0.00 0.00 2.92
534 535 1.001860 TGCACCTGATTGACGTGATCA 59.998 47.619 0.00 1.38 34.65 2.92
535 536 2.283298 GCACCTGATTGACGTGATCAT 58.717 47.619 10.61 0.00 37.11 2.45
536 537 2.031314 GCACCTGATTGACGTGATCATG 59.969 50.000 13.53 13.53 37.11 3.07
537 538 2.031314 CACCTGATTGACGTGATCATGC 59.969 50.000 15.01 8.39 37.11 4.06
538 539 2.093288 ACCTGATTGACGTGATCATGCT 60.093 45.455 15.01 2.43 37.11 3.79
539 540 2.543012 CCTGATTGACGTGATCATGCTC 59.457 50.000 15.01 11.62 37.11 4.26
540 541 3.455327 CTGATTGACGTGATCATGCTCT 58.545 45.455 15.01 0.00 37.11 4.09
541 542 3.865446 TGATTGACGTGATCATGCTCTT 58.135 40.909 15.01 0.00 37.11 2.85
542 543 4.256110 TGATTGACGTGATCATGCTCTTT 58.744 39.130 15.01 0.00 37.11 2.52
543 544 4.696877 TGATTGACGTGATCATGCTCTTTT 59.303 37.500 15.01 0.00 37.11 2.27
544 545 4.668576 TTGACGTGATCATGCTCTTTTC 57.331 40.909 15.01 4.59 37.11 2.29
545 546 2.667969 TGACGTGATCATGCTCTTTTCG 59.332 45.455 15.01 4.99 29.99 3.46
546 547 2.923655 GACGTGATCATGCTCTTTTCGA 59.076 45.455 15.01 0.00 0.00 3.71
547 548 3.525537 ACGTGATCATGCTCTTTTCGAT 58.474 40.909 15.01 0.00 0.00 3.59
548 549 3.308053 ACGTGATCATGCTCTTTTCGATG 59.692 43.478 15.01 0.00 0.00 3.84
549 550 3.308053 CGTGATCATGCTCTTTTCGATGT 59.692 43.478 1.07 0.00 0.00 3.06
550 551 4.201753 CGTGATCATGCTCTTTTCGATGTT 60.202 41.667 1.07 0.00 0.00 2.71
551 552 5.261661 GTGATCATGCTCTTTTCGATGTTC 58.738 41.667 0.00 0.00 0.00 3.18
552 553 4.937015 TGATCATGCTCTTTTCGATGTTCA 59.063 37.500 0.00 0.00 0.00 3.18
553 554 4.934075 TCATGCTCTTTTCGATGTTCAG 57.066 40.909 0.00 0.00 0.00 3.02
554 555 4.568956 TCATGCTCTTTTCGATGTTCAGA 58.431 39.130 0.00 0.00 0.00 3.27
555 556 4.389992 TCATGCTCTTTTCGATGTTCAGAC 59.610 41.667 0.00 0.00 0.00 3.51
556 557 2.731451 TGCTCTTTTCGATGTTCAGACG 59.269 45.455 0.00 0.00 0.00 4.18
557 558 2.731976 GCTCTTTTCGATGTTCAGACGT 59.268 45.455 0.00 0.00 0.00 4.34
558 559 3.918591 GCTCTTTTCGATGTTCAGACGTA 59.081 43.478 0.00 0.00 0.00 3.57
559 560 4.030753 GCTCTTTTCGATGTTCAGACGTAG 59.969 45.833 0.00 0.00 0.00 3.51
560 561 4.482386 TCTTTTCGATGTTCAGACGTAGG 58.518 43.478 0.00 0.00 0.00 3.18
561 562 2.273370 TTCGATGTTCAGACGTAGGC 57.727 50.000 0.00 0.00 0.00 3.93
562 563 0.454600 TCGATGTTCAGACGTAGGCC 59.545 55.000 0.00 0.00 0.00 5.19
563 564 0.172578 CGATGTTCAGACGTAGGCCA 59.827 55.000 5.01 0.00 0.00 5.36
564 565 1.403647 CGATGTTCAGACGTAGGCCAA 60.404 52.381 5.01 0.00 0.00 4.52
565 566 2.695359 GATGTTCAGACGTAGGCCAAA 58.305 47.619 5.01 0.00 0.00 3.28
566 567 2.163818 TGTTCAGACGTAGGCCAAAG 57.836 50.000 5.01 0.00 0.00 2.77
567 568 1.270625 TGTTCAGACGTAGGCCAAAGG 60.271 52.381 5.01 0.06 0.00 3.11
582 583 4.106029 CCAAAGGCATCATCAAACAGAG 57.894 45.455 0.00 0.00 0.00 3.35
583 584 3.508793 CCAAAGGCATCATCAAACAGAGT 59.491 43.478 0.00 0.00 0.00 3.24
584 585 4.021719 CCAAAGGCATCATCAAACAGAGTT 60.022 41.667 0.00 0.00 0.00 3.01
585 586 5.183713 CCAAAGGCATCATCAAACAGAGTTA 59.816 40.000 0.00 0.00 0.00 2.24
586 587 6.127535 CCAAAGGCATCATCAAACAGAGTTAT 60.128 38.462 0.00 0.00 0.00 1.89
587 588 6.446781 AAGGCATCATCAAACAGAGTTATG 57.553 37.500 0.00 0.00 0.00 1.90
588 589 5.748402 AGGCATCATCAAACAGAGTTATGA 58.252 37.500 0.00 0.00 0.00 2.15
589 590 6.363065 AGGCATCATCAAACAGAGTTATGAT 58.637 36.000 3.49 3.49 37.69 2.45
590 591 6.832384 AGGCATCATCAAACAGAGTTATGATT 59.168 34.615 5.74 0.00 35.61 2.57
591 592 7.341256 AGGCATCATCAAACAGAGTTATGATTT 59.659 33.333 5.74 0.00 35.61 2.17
592 593 7.434307 GGCATCATCAAACAGAGTTATGATTTG 59.566 37.037 5.74 0.00 35.61 2.32
593 594 7.972277 GCATCATCAAACAGAGTTATGATTTGT 59.028 33.333 5.74 0.00 35.61 2.83
596 597 8.668353 TCATCAAACAGAGTTATGATTTGTAGC 58.332 33.333 0.00 0.00 33.10 3.58
597 598 7.977789 TCAAACAGAGTTATGATTTGTAGCA 57.022 32.000 0.00 0.00 33.10 3.49
598 599 8.032952 TCAAACAGAGTTATGATTTGTAGCAG 57.967 34.615 0.00 0.00 33.10 4.24
599 600 6.428385 AACAGAGTTATGATTTGTAGCAGC 57.572 37.500 0.00 0.00 0.00 5.25
600 601 5.738909 ACAGAGTTATGATTTGTAGCAGCT 58.261 37.500 0.00 0.00 0.00 4.24
601 602 6.176183 ACAGAGTTATGATTTGTAGCAGCTT 58.824 36.000 0.00 0.00 0.00 3.74
602 603 6.093219 ACAGAGTTATGATTTGTAGCAGCTTG 59.907 38.462 0.00 0.00 0.00 4.01
603 604 6.093219 CAGAGTTATGATTTGTAGCAGCTTGT 59.907 38.462 0.00 0.00 0.00 3.16
604 605 6.314896 AGAGTTATGATTTGTAGCAGCTTGTC 59.685 38.462 0.00 0.00 0.00 3.18
605 606 5.939883 AGTTATGATTTGTAGCAGCTTGTCA 59.060 36.000 0.00 0.00 0.00 3.58
606 607 6.430925 AGTTATGATTTGTAGCAGCTTGTCAA 59.569 34.615 0.00 1.64 0.00 3.18
607 608 4.488126 TGATTTGTAGCAGCTTGTCAAC 57.512 40.909 0.00 0.00 0.00 3.18
608 609 3.253188 TGATTTGTAGCAGCTTGTCAACC 59.747 43.478 0.00 0.82 0.00 3.77
609 610 2.638480 TTGTAGCAGCTTGTCAACCT 57.362 45.000 0.00 0.00 0.00 3.50
610 611 2.169832 TGTAGCAGCTTGTCAACCTC 57.830 50.000 0.00 0.00 0.00 3.85
611 612 1.694150 TGTAGCAGCTTGTCAACCTCT 59.306 47.619 0.00 0.00 0.00 3.69
612 613 2.104792 TGTAGCAGCTTGTCAACCTCTT 59.895 45.455 0.00 0.00 0.00 2.85
613 614 1.889545 AGCAGCTTGTCAACCTCTTC 58.110 50.000 0.00 0.00 0.00 2.87
614 615 0.877743 GCAGCTTGTCAACCTCTTCC 59.122 55.000 0.00 0.00 0.00 3.46
615 616 1.544314 GCAGCTTGTCAACCTCTTCCT 60.544 52.381 0.00 0.00 0.00 3.36
616 617 2.856222 CAGCTTGTCAACCTCTTCCTT 58.144 47.619 0.00 0.00 0.00 3.36
617 618 2.551459 CAGCTTGTCAACCTCTTCCTTG 59.449 50.000 0.00 0.00 0.00 3.61
618 619 2.173569 AGCTTGTCAACCTCTTCCTTGT 59.826 45.455 0.00 0.00 0.00 3.16
619 620 2.952310 GCTTGTCAACCTCTTCCTTGTT 59.048 45.455 0.00 0.00 0.00 2.83
620 621 3.381590 GCTTGTCAACCTCTTCCTTGTTT 59.618 43.478 0.00 0.00 0.00 2.83
621 622 4.734695 GCTTGTCAACCTCTTCCTTGTTTG 60.735 45.833 0.00 0.00 0.00 2.93
622 623 3.287222 TGTCAACCTCTTCCTTGTTTGG 58.713 45.455 0.00 0.00 0.00 3.28
623 624 2.623416 GTCAACCTCTTCCTTGTTTGGG 59.377 50.000 0.00 0.00 0.00 4.12
624 625 2.243736 TCAACCTCTTCCTTGTTTGGGT 59.756 45.455 0.00 0.00 0.00 4.51
625 626 3.031013 CAACCTCTTCCTTGTTTGGGTT 58.969 45.455 0.00 0.00 36.21 4.11
626 627 3.398318 ACCTCTTCCTTGTTTGGGTTT 57.602 42.857 0.00 0.00 0.00 3.27
627 628 3.031013 ACCTCTTCCTTGTTTGGGTTTG 58.969 45.455 0.00 0.00 0.00 2.93
628 629 2.224042 CCTCTTCCTTGTTTGGGTTTGC 60.224 50.000 0.00 0.00 0.00 3.68
629 630 2.430332 CTCTTCCTTGTTTGGGTTTGCA 59.570 45.455 0.00 0.00 0.00 4.08
630 631 2.834549 TCTTCCTTGTTTGGGTTTGCAA 59.165 40.909 0.00 0.00 0.00 4.08
631 632 3.261897 TCTTCCTTGTTTGGGTTTGCAAA 59.738 39.130 8.05 8.05 0.00 3.68
632 633 3.703001 TCCTTGTTTGGGTTTGCAAAA 57.297 38.095 14.67 0.00 0.00 2.44
633 634 4.021102 TCCTTGTTTGGGTTTGCAAAAA 57.979 36.364 14.67 1.63 0.00 1.94
634 635 4.593956 TCCTTGTTTGGGTTTGCAAAAAT 58.406 34.783 14.67 0.00 0.00 1.82
635 636 4.397417 TCCTTGTTTGGGTTTGCAAAAATG 59.603 37.500 14.67 0.24 0.00 2.32
636 637 4.397417 CCTTGTTTGGGTTTGCAAAAATGA 59.603 37.500 14.67 0.00 0.00 2.57
637 638 4.954092 TGTTTGGGTTTGCAAAAATGAC 57.046 36.364 14.67 9.76 0.00 3.06
638 639 4.326826 TGTTTGGGTTTGCAAAAATGACA 58.673 34.783 14.67 12.12 0.00 3.58
639 640 4.394300 TGTTTGGGTTTGCAAAAATGACAG 59.606 37.500 14.67 0.00 0.00 3.51
640 641 2.559440 TGGGTTTGCAAAAATGACAGC 58.441 42.857 14.67 0.00 0.00 4.40
641 642 1.526464 GGGTTTGCAAAAATGACAGCG 59.474 47.619 14.67 0.00 0.00 5.18
642 643 2.200899 GGTTTGCAAAAATGACAGCGT 58.799 42.857 14.67 0.00 0.00 5.07
643 644 2.218530 GGTTTGCAAAAATGACAGCGTC 59.781 45.455 14.67 0.00 0.00 5.19
644 645 2.857152 GTTTGCAAAAATGACAGCGTCA 59.143 40.909 14.67 12.53 46.90 4.35
656 657 5.629079 TGACAGCGTCATCTACATATAGG 57.371 43.478 7.20 0.00 37.67 2.57
657 658 4.082733 TGACAGCGTCATCTACATATAGGC 60.083 45.833 7.20 0.00 37.67 3.93
658 659 4.082845 ACAGCGTCATCTACATATAGGCT 58.917 43.478 0.00 0.00 0.00 4.58
659 660 4.082517 ACAGCGTCATCTACATATAGGCTG 60.083 45.833 12.25 12.25 41.13 4.85
660 661 4.156739 CAGCGTCATCTACATATAGGCTGA 59.843 45.833 9.08 0.00 39.32 4.26
661 662 4.952957 AGCGTCATCTACATATAGGCTGAT 59.047 41.667 0.00 0.00 0.00 2.90
662 663 5.039984 GCGTCATCTACATATAGGCTGATG 58.960 45.833 11.56 11.56 34.21 3.07
663 664 5.039984 CGTCATCTACATATAGGCTGATGC 58.960 45.833 12.47 8.64 33.48 3.91
664 665 5.039984 GTCATCTACATATAGGCTGATGCG 58.960 45.833 12.47 3.90 40.82 4.73
665 666 3.510388 TCTACATATAGGCTGATGCGC 57.490 47.619 0.00 0.00 40.82 6.09
666 667 2.825532 TCTACATATAGGCTGATGCGCA 59.174 45.455 14.96 14.96 40.82 6.09
668 669 1.345741 ACATATAGGCTGATGCGCAGT 59.654 47.619 18.32 3.82 46.62 4.40
669 670 2.224378 ACATATAGGCTGATGCGCAGTT 60.224 45.455 18.32 0.00 46.62 3.16
670 671 2.620251 TATAGGCTGATGCGCAGTTT 57.380 45.000 18.32 0.00 46.62 2.66
671 672 1.019673 ATAGGCTGATGCGCAGTTTG 58.980 50.000 18.32 7.18 46.62 2.93
672 673 0.036483 TAGGCTGATGCGCAGTTTGA 60.036 50.000 18.32 0.00 46.62 2.69
673 674 1.136147 GGCTGATGCGCAGTTTGAG 59.864 57.895 18.32 3.53 46.62 3.02
674 675 1.513586 GCTGATGCGCAGTTTGAGC 60.514 57.895 18.32 11.06 46.62 4.26
675 676 1.919956 GCTGATGCGCAGTTTGAGCT 61.920 55.000 18.32 0.00 46.62 4.09
676 677 0.096628 CTGATGCGCAGTTTGAGCTC 59.903 55.000 18.32 6.82 43.72 4.09
677 678 1.059994 GATGCGCAGTTTGAGCTCG 59.940 57.895 18.32 0.00 43.72 5.03
678 679 2.893114 GATGCGCAGTTTGAGCTCGC 62.893 60.000 18.32 8.04 43.72 5.03
680 681 4.139420 CGCAGTTTGAGCTCGCGG 62.139 66.667 20.79 10.67 42.13 6.46
681 682 4.451652 GCAGTTTGAGCTCGCGGC 62.452 66.667 6.13 9.11 42.19 6.53
682 683 3.793144 CAGTTTGAGCTCGCGGCC 61.793 66.667 6.13 0.00 43.05 6.13
683 684 4.008933 AGTTTGAGCTCGCGGCCT 62.009 61.111 6.13 2.00 43.05 5.19
684 685 3.793144 GTTTGAGCTCGCGGCCTG 61.793 66.667 6.13 0.00 43.05 4.85
696 697 4.666253 GGCCTGGAAGCTGTGCCA 62.666 66.667 0.00 5.44 41.76 4.92
702 703 2.113860 TGGAAGCTGTGCCAGAATAC 57.886 50.000 6.40 0.00 32.44 1.89
703 704 1.630369 TGGAAGCTGTGCCAGAATACT 59.370 47.619 6.40 0.00 32.44 2.12
704 705 2.284190 GGAAGCTGTGCCAGAATACTC 58.716 52.381 6.40 0.00 32.44 2.59
705 706 2.355108 GGAAGCTGTGCCAGAATACTCA 60.355 50.000 6.40 0.00 32.44 3.41
706 707 2.687700 AGCTGTGCCAGAATACTCAG 57.312 50.000 6.40 0.00 32.44 3.35
707 708 1.012841 GCTGTGCCAGAATACTCAGC 58.987 55.000 6.40 0.00 40.66 4.26
708 709 1.406614 GCTGTGCCAGAATACTCAGCT 60.407 52.381 9.17 0.00 42.98 4.24
709 710 2.548875 CTGTGCCAGAATACTCAGCTC 58.451 52.381 0.00 0.00 32.44 4.09
710 711 1.901833 TGTGCCAGAATACTCAGCTCA 59.098 47.619 0.00 0.00 0.00 4.26
711 712 2.093816 TGTGCCAGAATACTCAGCTCAG 60.094 50.000 0.00 0.00 0.00 3.35
712 713 2.093764 GTGCCAGAATACTCAGCTCAGT 60.094 50.000 0.00 0.00 0.00 3.41
713 714 2.568956 TGCCAGAATACTCAGCTCAGTT 59.431 45.455 0.00 0.00 0.00 3.16
714 715 2.935201 GCCAGAATACTCAGCTCAGTTG 59.065 50.000 0.00 0.00 0.00 3.16
715 716 2.935201 CCAGAATACTCAGCTCAGTTGC 59.065 50.000 0.00 0.00 0.00 4.17
716 717 3.369261 CCAGAATACTCAGCTCAGTTGCT 60.369 47.826 0.00 0.00 45.18 3.91
717 718 3.864583 CAGAATACTCAGCTCAGTTGCTC 59.135 47.826 0.00 0.00 41.98 4.26
718 719 3.768757 AGAATACTCAGCTCAGTTGCTCT 59.231 43.478 0.00 0.00 41.98 4.09
719 720 4.222588 AGAATACTCAGCTCAGTTGCTCTT 59.777 41.667 0.00 0.00 41.98 2.85
720 721 2.166821 ACTCAGCTCAGTTGCTCTTG 57.833 50.000 0.00 0.00 41.98 3.02
721 722 0.797542 CTCAGCTCAGTTGCTCTTGC 59.202 55.000 0.00 0.00 41.98 4.01
733 734 2.396160 GCTCTTGCAATTAGGCGATG 57.604 50.000 0.00 0.00 39.41 3.84
734 735 1.598924 GCTCTTGCAATTAGGCGATGC 60.599 52.381 0.00 0.00 40.45 3.91
739 740 3.523606 TGCAATTAGGCGATGCAAATT 57.476 38.095 6.99 0.00 46.23 1.82
740 741 3.859443 TGCAATTAGGCGATGCAAATTT 58.141 36.364 6.99 0.00 46.23 1.82
741 742 4.252073 TGCAATTAGGCGATGCAAATTTT 58.748 34.783 6.99 0.00 46.23 1.82
742 743 5.414360 TGCAATTAGGCGATGCAAATTTTA 58.586 33.333 6.99 0.00 46.23 1.52
743 744 6.047870 TGCAATTAGGCGATGCAAATTTTAT 58.952 32.000 6.99 0.00 46.23 1.40
744 745 6.200665 TGCAATTAGGCGATGCAAATTTTATC 59.799 34.615 6.99 0.00 46.23 1.75
745 746 6.200665 GCAATTAGGCGATGCAAATTTTATCA 59.799 34.615 10.96 1.47 39.81 2.15
746 747 7.095523 GCAATTAGGCGATGCAAATTTTATCAT 60.096 33.333 10.96 5.43 39.81 2.45
747 748 9.409312 CAATTAGGCGATGCAAATTTTATCATA 57.591 29.630 10.96 1.50 0.00 2.15
752 753 8.981647 AGGCGATGCAAATTTTATCATATTTTC 58.018 29.630 10.96 0.00 0.00 2.29
753 754 8.763356 GGCGATGCAAATTTTATCATATTTTCA 58.237 29.630 10.96 0.00 0.00 2.69
842 843 9.554724 GCGATAACTAGATTGTGATTTTTCAAA 57.445 29.630 0.00 0.00 0.00 2.69
917 918 1.140816 GTCCTGTGCTTCGTCTGAAC 58.859 55.000 0.00 0.00 0.00 3.18
918 919 1.040646 TCCTGTGCTTCGTCTGAACT 58.959 50.000 0.00 0.00 0.00 3.01
919 920 1.000163 TCCTGTGCTTCGTCTGAACTC 60.000 52.381 0.00 0.00 0.00 3.01
920 921 1.000283 CCTGTGCTTCGTCTGAACTCT 60.000 52.381 0.00 0.00 0.00 3.24
921 922 2.057316 CTGTGCTTCGTCTGAACTCTG 58.943 52.381 0.00 0.00 0.00 3.35
922 923 1.681264 TGTGCTTCGTCTGAACTCTGA 59.319 47.619 0.00 0.00 0.00 3.27
923 924 2.100749 TGTGCTTCGTCTGAACTCTGAA 59.899 45.455 0.00 0.00 0.00 3.02
928 929 0.664466 CGTCTGAACTCTGAAGCGCA 60.664 55.000 11.47 0.00 0.00 6.09
930 931 2.072298 GTCTGAACTCTGAAGCGCATT 58.928 47.619 11.47 0.00 0.00 3.56
1278 1279 3.242804 GGTGAGAACCTCTACTCGAATCG 60.243 52.174 0.00 0.00 36.11 3.34
1442 1443 5.361427 TGTAGAAACGTGTTCAGGAATTGA 58.639 37.500 11.33 0.00 0.00 2.57
1518 1520 6.314120 AGATCTGGTCATCTAGCTATCTGTT 58.686 40.000 0.00 0.00 30.84 3.16
1571 1573 8.345565 CCTGGAATGCTTTTGACTATATGTTAC 58.654 37.037 0.00 0.00 0.00 2.50
1791 1799 2.916934 ACCTACTTTTGCCTGTGGGATA 59.083 45.455 2.66 0.00 38.07 2.59
2180 2189 6.598525 TGTTGTATCGCTGTAGTCAAATTTG 58.401 36.000 12.15 12.15 0.00 2.32
2367 2378 0.949397 GAACACCGTCTTCCCCAAAC 59.051 55.000 0.00 0.00 0.00 2.93
2378 2389 1.200519 TCCCCAAACTGGAGGTATCG 58.799 55.000 0.00 0.00 40.96 2.92
2461 2472 4.970662 TTTGCCTCTTTGATGCTATGTC 57.029 40.909 0.00 0.00 0.00 3.06
2503 2514 2.912956 TGTCTTCAGGGGCAAACTCTAT 59.087 45.455 0.00 0.00 0.00 1.98
2699 2712 4.099113 ACGATGACACATGTGAGATCATCT 59.901 41.667 33.05 24.44 42.24 2.90
2724 2737 1.315690 CCAGCCTCATAGCACAATGG 58.684 55.000 0.00 0.00 34.23 3.16
2731 2744 3.144506 CTCATAGCACAATGGCCTTAGG 58.855 50.000 3.32 0.00 0.00 2.69
3026 3040 1.851304 TGGGGATCATTGCCAGTTTC 58.149 50.000 0.00 0.00 34.36 2.78
3116 3131 6.008331 AGTTGTTGGAGGGGTATTAAAGTTC 58.992 40.000 0.00 0.00 0.00 3.01
3297 3312 9.784531 CTGAATTAATCCTGTGGATAACATAGT 57.215 33.333 0.00 0.00 42.27 2.12
3685 3715 6.653020 TCAAGCTATTTAATGAAGGCAGAGA 58.347 36.000 0.00 0.00 0.00 3.10
3768 3798 5.280654 AGAAGCATTGGTTTGTTTGTCAT 57.719 34.783 2.14 0.00 0.00 3.06
3874 3904 5.949354 TGAATTCATGTTTTCCTTACGGGAT 59.051 36.000 3.38 0.00 44.66 3.85
3989 4023 8.614346 GGTGTTGTAACTGTCAAAATACTGTTA 58.386 33.333 0.00 0.00 40.58 2.41
4126 4162 9.715121 ATGTTTTGACAATTGCAGATAATTTCT 57.285 25.926 5.05 0.00 33.90 2.52
4192 4228 4.663334 GTGTAATGGAAAGGGAAGAGGTT 58.337 43.478 0.00 0.00 0.00 3.50
4195 4231 3.728385 ATGGAAAGGGAAGAGGTTCAG 57.272 47.619 0.00 0.00 33.93 3.02
4201 4237 2.621070 AGGGAAGAGGTTCAGCTAACA 58.379 47.619 0.00 0.00 40.08 2.41
4253 4292 9.269453 CAATGCTGTCATTCTCTAATCTGAATA 57.731 33.333 0.00 0.00 40.74 1.75
4302 5027 9.210329 TCTTGAATATGTAAAACTTTAGCGTCA 57.790 29.630 0.00 0.00 0.00 4.35
4588 5430 5.363868 TGCTTACTCTGGAGCAATACTACAT 59.636 40.000 0.00 0.00 45.19 2.29
4709 5555 2.890945 GCATTTTATGGGGGCGTAAGAT 59.109 45.455 0.00 0.00 43.02 2.40
4782 5628 6.038603 GTCATAGCAGCAAATAATTCCACTCA 59.961 38.462 0.00 0.00 0.00 3.41
4952 5807 6.982141 AGAAGCGGTCGATACAAATACAATTA 59.018 34.615 0.00 0.00 0.00 1.40
4957 5812 7.529519 GCGGTCGATACAAATACAATTAATCAC 59.470 37.037 0.00 0.00 0.00 3.06
4989 5844 9.454859 CTCTTAAATTCTTAATCACTCCACCTT 57.545 33.333 0.00 0.00 0.00 3.50
5004 5859 6.540914 CACTCCACCTTTCTAACTTGTTAACA 59.459 38.462 3.59 3.59 0.00 2.41
5008 5863 6.970613 CCACCTTTCTAACTTGTTAACACAAC 59.029 38.462 8.07 0.00 38.03 3.32
5182 6037 7.308229 GCTGTCTTGGCAGTTTATATTCTATGG 60.308 40.741 4.11 0.00 38.65 2.74
5277 6132 9.227777 CATAAATGCAGATATGAGAAGGAATCA 57.772 33.333 13.61 0.00 32.43 2.57
5339 6194 3.367292 CGTGCCATGCTTATTCAGGTTTT 60.367 43.478 0.00 0.00 0.00 2.43
5449 6305 6.670027 ACTGGATCTTCAGGAGTAAGTTGTAT 59.330 38.462 4.31 0.00 38.98 2.29
5777 6633 6.644347 AGGTCTTCGAGACATTCATATGTTT 58.356 36.000 14.26 0.00 46.79 2.83
5778 6634 7.106239 AGGTCTTCGAGACATTCATATGTTTT 58.894 34.615 14.26 0.00 46.79 2.43
6076 6941 9.640963 ATGTTTAGTCTATCCTACGCATTAATC 57.359 33.333 0.00 0.00 0.00 1.75
6118 6983 7.214467 TCCATTTCAAGTTTTAGGTCACATC 57.786 36.000 0.00 0.00 0.00 3.06
6225 7090 3.580039 CAAAATATGAGGGGGCCAGAAT 58.420 45.455 4.39 0.00 0.00 2.40
6271 7142 5.978919 GTGATGTTTTGTTGCTGAGATGAAA 59.021 36.000 0.00 0.00 0.00 2.69
6272 7143 5.978919 TGATGTTTTGTTGCTGAGATGAAAC 59.021 36.000 0.00 0.00 0.00 2.78
6273 7144 5.581126 TGTTTTGTTGCTGAGATGAAACT 57.419 34.783 0.00 0.00 0.00 2.66
6274 7145 5.964758 TGTTTTGTTGCTGAGATGAAACTT 58.035 33.333 0.00 0.00 0.00 2.66
6311 7182 8.160106 AGGAACTTTCAACTAGTGATTGATTCT 58.840 33.333 0.00 0.00 36.02 2.40
6458 7329 8.454894 GGTCAGTCATCTAAAAATTCTCTTTCC 58.545 37.037 0.00 0.00 0.00 3.13
6485 7359 7.256332 GGCCTCTCTACTTGATTATTGTGGATA 60.256 40.741 0.00 0.00 0.00 2.59
6500 7374 1.004277 TGGATAGCCTGTGGACCAAAC 59.996 52.381 0.00 0.00 34.31 2.93
6501 7375 1.282157 GGATAGCCTGTGGACCAAACT 59.718 52.381 0.00 0.00 0.00 2.66
6502 7376 2.504175 GGATAGCCTGTGGACCAAACTA 59.496 50.000 0.00 0.00 0.00 2.24
6503 7377 3.054655 GGATAGCCTGTGGACCAAACTAA 60.055 47.826 0.00 0.00 0.00 2.24
6504 7378 4.566907 GGATAGCCTGTGGACCAAACTAAA 60.567 45.833 0.00 0.00 0.00 1.85
6505 7379 3.525800 AGCCTGTGGACCAAACTAAAT 57.474 42.857 0.00 0.00 0.00 1.40
6538 7412 4.453478 TGCAGTTTGAGAGATGACATGTTC 59.547 41.667 0.00 0.00 0.00 3.18
6660 7534 7.373493 ACTTTAGCTGTGATTCATTTTTGAGG 58.627 34.615 0.00 0.00 0.00 3.86
6742 7616 8.752766 AATAGTCTTTTGATGTGAAATGCTTG 57.247 30.769 0.00 0.00 0.00 4.01
6851 7725 2.030893 GCAATCTGTGTGTTGCTGCTAA 60.031 45.455 0.00 0.00 45.41 3.09
6976 7850 3.175929 CGTTGGCGTTTTTCTTTGAACT 58.824 40.909 0.00 0.00 0.00 3.01
7018 7892 9.925268 GTTTATTTCTCGTGTCTAAAAGAAACA 57.075 29.630 10.36 0.00 40.15 2.83
7035 7909 3.550437 AACAGATTCCGAGGATGAAGG 57.450 47.619 0.00 0.00 0.00 3.46
7122 7996 8.794335 AAAAGGATTTCACAGTCTTATACTCC 57.206 34.615 0.00 0.00 37.28 3.85
7123 7997 6.487299 AGGATTTCACAGTCTTATACTCCC 57.513 41.667 0.00 0.00 35.76 4.30
7124 7998 6.206042 AGGATTTCACAGTCTTATACTCCCT 58.794 40.000 0.00 0.00 35.76 4.20
7125 7999 6.674419 AGGATTTCACAGTCTTATACTCCCTT 59.326 38.462 0.00 0.00 35.76 3.95
7126 8000 6.987404 GGATTTCACAGTCTTATACTCCCTTC 59.013 42.308 0.00 0.00 35.76 3.46
7127 8001 5.578005 TTCACAGTCTTATACTCCCTTCG 57.422 43.478 0.00 0.00 35.76 3.79
7128 8002 4.597004 TCACAGTCTTATACTCCCTTCGT 58.403 43.478 0.00 0.00 35.76 3.85
7129 8003 5.748402 TCACAGTCTTATACTCCCTTCGTA 58.252 41.667 0.00 0.00 35.76 3.43
7130 8004 6.182627 TCACAGTCTTATACTCCCTTCGTAA 58.817 40.000 0.00 0.00 35.76 3.18
7131 8005 6.660521 TCACAGTCTTATACTCCCTTCGTAAA 59.339 38.462 0.00 0.00 35.76 2.01
7132 8006 6.750963 CACAGTCTTATACTCCCTTCGTAAAC 59.249 42.308 0.00 0.00 35.76 2.01
7133 8007 6.662663 ACAGTCTTATACTCCCTTCGTAAACT 59.337 38.462 0.00 0.00 35.76 2.66
7134 8008 7.831193 ACAGTCTTATACTCCCTTCGTAAACTA 59.169 37.037 0.00 0.00 35.76 2.24
7135 8009 8.680903 CAGTCTTATACTCCCTTCGTAAACTAA 58.319 37.037 0.00 0.00 35.76 2.24
7136 8010 9.418839 AGTCTTATACTCCCTTCGTAAACTAAT 57.581 33.333 0.00 0.00 30.33 1.73
7144 8018 8.358895 ACTCCCTTCGTAAACTAATATAAGAGC 58.641 37.037 0.00 0.00 0.00 4.09
7145 8019 8.241497 TCCCTTCGTAAACTAATATAAGAGCA 57.759 34.615 0.00 0.00 0.00 4.26
7146 8020 8.867097 TCCCTTCGTAAACTAATATAAGAGCAT 58.133 33.333 0.00 0.00 0.00 3.79
7147 8021 9.490379 CCCTTCGTAAACTAATATAAGAGCATT 57.510 33.333 0.00 0.00 0.00 3.56
7178 8052 9.865321 TCATTAAAGTAGTTATGTAAACGCTCT 57.135 29.630 0.00 0.00 0.00 4.09
7194 8068 9.450807 GTAAACGCTCTTATATTAGTTTACGGA 57.549 33.333 11.51 0.00 41.74 4.69
7195 8069 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
7196 8070 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
7197 8071 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
7198 8072 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
7199 8073 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
7200 8074 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
7201 8075 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
7202 8076 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
7203 8077 8.995027 TTATATTAGTTTACGGAGGGAGTACA 57.005 34.615 0.00 0.00 0.00 2.90
7273 8150 3.464828 TCCTGAAAATCTTAGAGGCCCT 58.535 45.455 0.00 0.00 0.00 5.19
7274 8151 3.200825 TCCTGAAAATCTTAGAGGCCCTG 59.799 47.826 0.00 0.00 0.00 4.45
7276 8153 4.141298 CCTGAAAATCTTAGAGGCCCTGAT 60.141 45.833 0.00 0.00 0.00 2.90
7277 8154 5.444176 CTGAAAATCTTAGAGGCCCTGATT 58.556 41.667 0.00 0.00 0.00 2.57
7279 8156 4.870021 AAATCTTAGAGGCCCTGATTGT 57.130 40.909 0.00 0.00 0.00 2.71
7280 8157 3.853355 ATCTTAGAGGCCCTGATTGTG 57.147 47.619 0.00 0.00 0.00 3.33
7282 8159 3.387962 TCTTAGAGGCCCTGATTGTGAT 58.612 45.455 0.00 0.00 0.00 3.06
7283 8160 3.135348 TCTTAGAGGCCCTGATTGTGATG 59.865 47.826 0.00 0.00 0.00 3.07
7284 8161 1.588239 AGAGGCCCTGATTGTGATGA 58.412 50.000 0.00 0.00 0.00 2.92
7285 8162 1.918262 AGAGGCCCTGATTGTGATGAA 59.082 47.619 0.00 0.00 0.00 2.57
7286 8163 2.309755 AGAGGCCCTGATTGTGATGAAA 59.690 45.455 0.00 0.00 0.00 2.69
7287 8164 3.053095 AGAGGCCCTGATTGTGATGAAAT 60.053 43.478 0.00 0.00 0.00 2.17
7288 8165 3.294214 AGGCCCTGATTGTGATGAAATC 58.706 45.455 0.00 0.00 45.83 2.17
7365 8242 1.967066 TGGTACCCTTGCAAACCATTG 59.033 47.619 15.24 0.00 37.09 2.82
7420 8297 1.199852 CGTGTTGAAAAGTGGCGCAC 61.200 55.000 10.83 5.73 34.10 5.34
7514 8392 4.944962 TCATGTGTCGAAATCATGAACC 57.055 40.909 19.11 0.00 42.87 3.62
7515 8393 4.322567 TCATGTGTCGAAATCATGAACCA 58.677 39.130 19.11 0.00 42.87 3.67
7520 8398 6.148948 TGTGTCGAAATCATGAACCATTTTC 58.851 36.000 0.00 4.07 0.00 2.29
7525 8403 6.310956 TCGAAATCATGAACCATTTTCATTGC 59.689 34.615 15.47 0.00 37.06 3.56
7538 8416 5.903764 TTTTCATTGCTGGATTTTTCACG 57.096 34.783 0.00 0.00 0.00 4.35
7554 8432 0.721718 CACGCCGAGATCTTGGAAAC 59.278 55.000 30.35 13.19 36.15 2.78
7564 8442 5.453903 CGAGATCTTGGAAACTACATCCCAT 60.454 44.000 1.50 0.00 36.04 4.00
7581 8459 6.951198 ACATCCCATGTTAATAGGTTTTGACA 59.049 34.615 0.00 0.00 41.63 3.58
7582 8460 7.453126 ACATCCCATGTTAATAGGTTTTGACAA 59.547 33.333 0.00 0.00 41.63 3.18
7583 8461 7.841282 TCCCATGTTAATAGGTTTTGACAAA 57.159 32.000 0.00 0.00 0.00 2.83
7584 8462 8.251383 TCCCATGTTAATAGGTTTTGACAAAA 57.749 30.769 9.30 9.30 0.00 2.44
7585 8463 8.705594 TCCCATGTTAATAGGTTTTGACAAAAA 58.294 29.630 14.75 0.59 32.82 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.249189 AAAGGGTCCGAGCTGCCA 61.249 61.111 0.00 0.00 0.00 4.92
46 47 6.348376 GCAAAATGAAGAGAGACTCTGGAAAG 60.348 42.308 10.44 0.00 40.28 2.62
47 48 5.471456 GCAAAATGAAGAGAGACTCTGGAAA 59.529 40.000 10.44 0.00 40.28 3.13
54 55 3.683802 CCTGGCAAAATGAAGAGAGACT 58.316 45.455 0.00 0.00 0.00 3.24
57 58 2.444421 AGCCTGGCAAAATGAAGAGAG 58.556 47.619 22.65 0.00 0.00 3.20
62 63 1.185315 GGCTAGCCTGGCAAAATGAA 58.815 50.000 27.17 0.00 0.00 2.57
83 84 0.384309 CTCTACGCCAGCGATGGTTA 59.616 55.000 22.68 11.96 42.83 2.85
91 92 2.510238 CCAGTGCTCTACGCCAGC 60.510 66.667 0.00 0.00 38.05 4.85
101 102 1.558756 CTGGGAAGATTCTCCAGTGCT 59.441 52.381 16.09 0.00 39.12 4.40
107 108 2.507471 ACATGACCTGGGAAGATTCTCC 59.493 50.000 0.00 0.00 34.41 3.71
110 111 4.640647 GGTTTACATGACCTGGGAAGATTC 59.359 45.833 0.00 0.00 34.27 2.52
114 115 3.721087 AGGTTTACATGACCTGGGAAG 57.279 47.619 0.00 0.00 45.59 3.46
116 117 2.504175 GCTAGGTTTACATGACCTGGGA 59.496 50.000 13.52 0.00 46.68 4.37
122 123 2.026636 TGGTGGGCTAGGTTTACATGAC 60.027 50.000 0.00 0.00 0.00 3.06
130 131 2.110011 ACAGAAAATGGTGGGCTAGGTT 59.890 45.455 0.00 0.00 0.00 3.50
131 132 1.710809 ACAGAAAATGGTGGGCTAGGT 59.289 47.619 0.00 0.00 0.00 3.08
137 138 3.305335 GCACACTAACAGAAAATGGTGGG 60.305 47.826 0.00 0.00 29.60 4.61
146 147 6.978080 GGAAGAAAATTTGCACACTAACAGAA 59.022 34.615 0.00 0.00 0.00 3.02
153 154 4.060205 GCATGGAAGAAAATTTGCACACT 58.940 39.130 0.00 0.00 31.02 3.55
188 189 2.370849 AGAAAAAGACCTAACTGCCGGA 59.629 45.455 5.05 0.00 0.00 5.14
197 198 3.137544 TCTGGGCACAAGAAAAAGACCTA 59.862 43.478 0.00 0.00 0.00 3.08
203 204 2.746279 TCCTCTGGGCACAAGAAAAA 57.254 45.000 0.00 0.00 0.00 1.94
221 222 1.012486 ACAAGATCCGTCGCCGTTTC 61.012 55.000 0.00 0.00 0.00 2.78
225 226 0.806102 ATTGACAAGATCCGTCGCCG 60.806 55.000 8.03 0.00 36.11 6.46
232 233 4.456911 TGCTCAAAGACATTGACAAGATCC 59.543 41.667 0.00 0.00 43.08 3.36
245 246 3.669023 CGCCAAAGAGATTGCTCAAAGAC 60.669 47.826 0.00 0.00 43.81 3.01
257 258 2.048222 CTGCGACCGCCAAAGAGA 60.048 61.111 12.08 0.00 41.09 3.10
258 259 3.793144 GCTGCGACCGCCAAAGAG 61.793 66.667 12.08 3.31 41.09 2.85
268 269 2.740055 CCCTGTCTGTGCTGCGAC 60.740 66.667 0.00 0.00 0.00 5.19
271 272 4.687215 TCGCCCTGTCTGTGCTGC 62.687 66.667 0.00 0.00 0.00 5.25
283 284 1.499049 CGCTATCCTAACTTTCGCCC 58.501 55.000 0.00 0.00 0.00 6.13
290 291 1.957877 GTGCTCTCCGCTATCCTAACT 59.042 52.381 0.00 0.00 40.11 2.24
311 312 4.308265 GAAGAAGGGTATTAGTCCGATGC 58.692 47.826 0.00 0.00 0.00 3.91
320 321 1.779221 TCGCCGGAAGAAGGGTATTA 58.221 50.000 5.05 0.00 0.00 0.98
323 324 0.248289 CTTTCGCCGGAAGAAGGGTA 59.752 55.000 5.05 0.00 32.80 3.69
333 334 3.927142 GGTAGATTGATATCTTTCGCCGG 59.073 47.826 0.00 0.00 41.38 6.13
338 339 8.841300 GGTTGGAAAGGTAGATTGATATCTTTC 58.159 37.037 9.86 9.86 45.84 2.62
341 342 6.464465 CCGGTTGGAAAGGTAGATTGATATCT 60.464 42.308 3.98 0.00 40.17 1.98
343 344 5.621193 CCGGTTGGAAAGGTAGATTGATAT 58.379 41.667 0.00 0.00 37.49 1.63
344 345 4.685030 GCCGGTTGGAAAGGTAGATTGATA 60.685 45.833 1.90 0.00 37.49 2.15
353 354 0.898326 GATTGGCCGGTTGGAAAGGT 60.898 55.000 1.90 0.00 37.49 3.50
365 366 1.876156 CGGATTAGAGCAAGATTGGCC 59.124 52.381 0.00 0.00 0.00 5.36
383 384 6.845302 TCACTTTCAATTCATTCTTGATCGG 58.155 36.000 0.00 0.00 32.94 4.18
387 388 9.342308 ACTAGTTCACTTTCAATTCATTCTTGA 57.658 29.630 0.00 0.00 0.00 3.02
404 405 2.159352 GGGAAGAGCGAGACTAGTTCAC 60.159 54.545 0.00 0.00 0.00 3.18
406 407 2.093106 TGGGAAGAGCGAGACTAGTTC 58.907 52.381 0.00 0.00 0.00 3.01
422 423 2.609299 TTGCCGATCACCCTGGGA 60.609 61.111 22.23 0.00 0.00 4.37
425 426 2.438434 GGGTTGCCGATCACCCTG 60.438 66.667 11.00 0.00 39.27 4.45
435 436 4.082125 CCCATCAAATATCTAGGGTTGCC 58.918 47.826 0.00 0.00 0.00 4.52
440 441 5.073691 ACAGTTCCCCATCAAATATCTAGGG 59.926 44.000 0.00 0.00 36.04 3.53
443 444 6.575244 ACACAGTTCCCCATCAAATATCTA 57.425 37.500 0.00 0.00 0.00 1.98
446 447 5.332743 ACAACACAGTTCCCCATCAAATAT 58.667 37.500 0.00 0.00 0.00 1.28
463 464 1.398692 TTTTGGAGGCCAGACAACAC 58.601 50.000 5.01 0.00 33.81 3.32
494 495 5.123027 GTGCAATGACAAAAACCTCCAAAAA 59.877 36.000 0.00 0.00 0.00 1.94
495 496 4.633565 GTGCAATGACAAAAACCTCCAAAA 59.366 37.500 0.00 0.00 0.00 2.44
496 497 4.187694 GTGCAATGACAAAAACCTCCAAA 58.812 39.130 0.00 0.00 0.00 3.28
497 498 3.431486 GGTGCAATGACAAAAACCTCCAA 60.431 43.478 0.00 0.00 0.00 3.53
498 499 2.102252 GGTGCAATGACAAAAACCTCCA 59.898 45.455 0.00 0.00 0.00 3.86
499 500 2.365293 AGGTGCAATGACAAAAACCTCC 59.635 45.455 0.00 0.00 32.58 4.30
500 501 3.068024 TCAGGTGCAATGACAAAAACCTC 59.932 43.478 0.00 0.00 35.87 3.85
501 502 3.030291 TCAGGTGCAATGACAAAAACCT 58.970 40.909 0.00 0.00 38.57 3.50
502 503 3.451141 TCAGGTGCAATGACAAAAACC 57.549 42.857 0.00 0.00 0.00 3.27
503 504 5.049167 TCAATCAGGTGCAATGACAAAAAC 58.951 37.500 5.07 0.00 0.00 2.43
504 505 5.049167 GTCAATCAGGTGCAATGACAAAAA 58.951 37.500 5.07 0.00 40.02 1.94
505 506 4.619973 GTCAATCAGGTGCAATGACAAAA 58.380 39.130 5.07 0.00 40.02 2.44
506 507 3.304592 CGTCAATCAGGTGCAATGACAAA 60.305 43.478 5.07 0.00 40.22 2.83
507 508 2.226200 CGTCAATCAGGTGCAATGACAA 59.774 45.455 5.07 0.00 40.22 3.18
508 509 1.805943 CGTCAATCAGGTGCAATGACA 59.194 47.619 5.07 0.00 40.22 3.58
509 510 1.806542 ACGTCAATCAGGTGCAATGAC 59.193 47.619 5.07 4.89 37.60 3.06
510 511 1.805943 CACGTCAATCAGGTGCAATGA 59.194 47.619 5.41 5.41 34.22 2.57
511 512 1.805943 TCACGTCAATCAGGTGCAATG 59.194 47.619 0.00 0.00 40.19 2.82
512 513 2.183478 TCACGTCAATCAGGTGCAAT 57.817 45.000 0.00 0.00 40.19 3.56
513 514 2.076100 GATCACGTCAATCAGGTGCAA 58.924 47.619 0.00 0.00 40.19 4.08
514 515 1.001860 TGATCACGTCAATCAGGTGCA 59.998 47.619 6.13 0.00 40.19 4.57
515 516 1.725641 TGATCACGTCAATCAGGTGC 58.274 50.000 6.13 0.00 40.19 5.01
516 517 2.031314 GCATGATCACGTCAATCAGGTG 59.969 50.000 18.13 12.38 40.97 4.00
517 518 2.093288 AGCATGATCACGTCAATCAGGT 60.093 45.455 18.13 11.79 40.97 4.00
518 519 2.543012 GAGCATGATCACGTCAATCAGG 59.457 50.000 5.98 14.58 40.97 3.86
519 520 3.455327 AGAGCATGATCACGTCAATCAG 58.545 45.455 14.38 8.48 40.97 2.90
520 521 3.531934 AGAGCATGATCACGTCAATCA 57.468 42.857 14.38 11.45 40.97 2.57
521 522 4.871993 AAAGAGCATGATCACGTCAATC 57.128 40.909 14.38 0.00 40.97 2.67
522 523 4.201753 CGAAAAGAGCATGATCACGTCAAT 60.202 41.667 14.38 0.00 40.97 2.57
523 524 3.123453 CGAAAAGAGCATGATCACGTCAA 59.877 43.478 14.38 0.00 40.97 3.18
524 525 2.667969 CGAAAAGAGCATGATCACGTCA 59.332 45.455 14.38 0.00 42.06 4.35
525 526 2.923655 TCGAAAAGAGCATGATCACGTC 59.076 45.455 14.38 5.79 0.00 4.34
526 527 2.959516 TCGAAAAGAGCATGATCACGT 58.040 42.857 14.38 0.00 0.00 4.49
527 528 3.308053 ACATCGAAAAGAGCATGATCACG 59.692 43.478 14.38 12.57 0.00 4.35
528 529 4.871993 ACATCGAAAAGAGCATGATCAC 57.128 40.909 14.38 0.94 0.00 3.06
529 530 4.937015 TGAACATCGAAAAGAGCATGATCA 59.063 37.500 14.38 0.00 0.00 2.92
530 531 5.292834 TCTGAACATCGAAAAGAGCATGATC 59.707 40.000 1.78 1.78 0.00 2.92
531 532 5.064452 GTCTGAACATCGAAAAGAGCATGAT 59.936 40.000 0.00 0.00 0.00 2.45
532 533 4.389992 GTCTGAACATCGAAAAGAGCATGA 59.610 41.667 0.00 0.00 0.00 3.07
533 534 4.645956 GTCTGAACATCGAAAAGAGCATG 58.354 43.478 0.00 0.00 0.00 4.06
534 535 3.369147 CGTCTGAACATCGAAAAGAGCAT 59.631 43.478 0.00 0.00 0.00 3.79
535 536 2.731451 CGTCTGAACATCGAAAAGAGCA 59.269 45.455 0.00 0.00 0.00 4.26
536 537 2.731976 ACGTCTGAACATCGAAAAGAGC 59.268 45.455 0.00 0.00 0.00 4.09
537 538 4.559251 CCTACGTCTGAACATCGAAAAGAG 59.441 45.833 0.00 0.00 0.00 2.85
538 539 4.482386 CCTACGTCTGAACATCGAAAAGA 58.518 43.478 0.00 0.00 0.00 2.52
539 540 3.060895 GCCTACGTCTGAACATCGAAAAG 59.939 47.826 0.00 0.00 0.00 2.27
540 541 2.991190 GCCTACGTCTGAACATCGAAAA 59.009 45.455 0.00 0.00 0.00 2.29
541 542 2.602878 GCCTACGTCTGAACATCGAAA 58.397 47.619 0.00 0.00 0.00 3.46
542 543 1.135199 GGCCTACGTCTGAACATCGAA 60.135 52.381 0.00 0.00 0.00 3.71
543 544 0.454600 GGCCTACGTCTGAACATCGA 59.545 55.000 0.00 0.00 0.00 3.59
544 545 0.172578 TGGCCTACGTCTGAACATCG 59.827 55.000 3.32 0.00 0.00 3.84
545 546 2.380084 TTGGCCTACGTCTGAACATC 57.620 50.000 3.32 0.00 0.00 3.06
546 547 2.615493 CCTTTGGCCTACGTCTGAACAT 60.615 50.000 3.32 0.00 0.00 2.71
547 548 1.270625 CCTTTGGCCTACGTCTGAACA 60.271 52.381 3.32 0.00 0.00 3.18
548 549 1.439679 CCTTTGGCCTACGTCTGAAC 58.560 55.000 3.32 0.00 0.00 3.18
549 550 0.321298 GCCTTTGGCCTACGTCTGAA 60.321 55.000 3.32 0.00 44.06 3.02
550 551 1.295423 GCCTTTGGCCTACGTCTGA 59.705 57.895 3.32 0.00 44.06 3.27
551 552 3.890674 GCCTTTGGCCTACGTCTG 58.109 61.111 3.32 0.00 44.06 3.51
561 562 3.508793 ACTCTGTTTGATGATGCCTTTGG 59.491 43.478 0.00 0.00 0.00 3.28
562 563 4.778534 ACTCTGTTTGATGATGCCTTTG 57.221 40.909 0.00 0.00 0.00 2.77
563 564 6.660521 TCATAACTCTGTTTGATGATGCCTTT 59.339 34.615 0.00 0.00 0.00 3.11
564 565 6.182627 TCATAACTCTGTTTGATGATGCCTT 58.817 36.000 0.00 0.00 0.00 4.35
565 566 5.748402 TCATAACTCTGTTTGATGATGCCT 58.252 37.500 0.00 0.00 0.00 4.75
566 567 6.630444 ATCATAACTCTGTTTGATGATGCC 57.370 37.500 7.49 0.00 36.22 4.40
567 568 7.972277 ACAAATCATAACTCTGTTTGATGATGC 59.028 33.333 8.53 0.00 37.33 3.91
570 571 8.668353 GCTACAAATCATAACTCTGTTTGATGA 58.332 33.333 0.00 0.00 34.71 2.92
571 572 8.453320 TGCTACAAATCATAACTCTGTTTGATG 58.547 33.333 0.00 0.00 34.71 3.07
572 573 8.565896 TGCTACAAATCATAACTCTGTTTGAT 57.434 30.769 0.00 0.00 34.71 2.57
573 574 7.361201 GCTGCTACAAATCATAACTCTGTTTGA 60.361 37.037 0.00 0.00 34.71 2.69
574 575 6.744537 GCTGCTACAAATCATAACTCTGTTTG 59.255 38.462 0.00 0.00 36.23 2.93
575 576 6.656693 AGCTGCTACAAATCATAACTCTGTTT 59.343 34.615 0.00 0.00 0.00 2.83
576 577 6.176183 AGCTGCTACAAATCATAACTCTGTT 58.824 36.000 0.00 0.00 0.00 3.16
577 578 5.738909 AGCTGCTACAAATCATAACTCTGT 58.261 37.500 0.00 0.00 0.00 3.41
578 579 6.093219 ACAAGCTGCTACAAATCATAACTCTG 59.907 38.462 0.90 0.00 0.00 3.35
579 580 6.176183 ACAAGCTGCTACAAATCATAACTCT 58.824 36.000 0.90 0.00 0.00 3.24
580 581 6.092670 TGACAAGCTGCTACAAATCATAACTC 59.907 38.462 0.90 0.00 0.00 3.01
581 582 5.939883 TGACAAGCTGCTACAAATCATAACT 59.060 36.000 0.90 0.00 0.00 2.24
582 583 6.182039 TGACAAGCTGCTACAAATCATAAC 57.818 37.500 0.90 0.00 0.00 1.89
583 584 6.349280 GGTTGACAAGCTGCTACAAATCATAA 60.349 38.462 10.12 0.00 0.00 1.90
584 585 5.123820 GGTTGACAAGCTGCTACAAATCATA 59.876 40.000 10.12 0.00 0.00 2.15
585 586 4.082571 GGTTGACAAGCTGCTACAAATCAT 60.083 41.667 10.12 0.00 0.00 2.45
586 587 3.253188 GGTTGACAAGCTGCTACAAATCA 59.747 43.478 10.12 0.00 0.00 2.57
587 588 3.503748 AGGTTGACAAGCTGCTACAAATC 59.496 43.478 18.73 6.61 37.93 2.17
588 589 3.490348 AGGTTGACAAGCTGCTACAAAT 58.510 40.909 18.73 0.82 37.93 2.32
589 590 2.878406 GAGGTTGACAAGCTGCTACAAA 59.122 45.455 23.86 0.00 39.77 2.83
590 591 2.104792 AGAGGTTGACAAGCTGCTACAA 59.895 45.455 23.86 7.61 39.77 2.41
591 592 1.694150 AGAGGTTGACAAGCTGCTACA 59.306 47.619 23.86 1.08 39.77 2.74
592 593 2.464157 AGAGGTTGACAAGCTGCTAC 57.536 50.000 23.86 9.81 39.77 3.58
593 594 2.289694 GGAAGAGGTTGACAAGCTGCTA 60.290 50.000 23.86 0.00 39.77 3.49
594 595 1.544314 GGAAGAGGTTGACAAGCTGCT 60.544 52.381 23.86 16.46 39.77 4.24
595 596 0.877743 GGAAGAGGTTGACAAGCTGC 59.122 55.000 23.86 14.69 39.77 5.25
596 597 2.551459 CAAGGAAGAGGTTGACAAGCTG 59.449 50.000 23.86 5.48 39.77 4.24
597 598 2.173569 ACAAGGAAGAGGTTGACAAGCT 59.826 45.455 19.43 19.43 42.93 3.74
598 599 2.576615 ACAAGGAAGAGGTTGACAAGC 58.423 47.619 9.38 9.38 0.00 4.01
599 600 4.202050 CCAAACAAGGAAGAGGTTGACAAG 60.202 45.833 0.00 0.00 0.00 3.16
600 601 3.699038 CCAAACAAGGAAGAGGTTGACAA 59.301 43.478 0.00 0.00 0.00 3.18
601 602 3.287222 CCAAACAAGGAAGAGGTTGACA 58.713 45.455 0.00 0.00 0.00 3.58
602 603 2.623416 CCCAAACAAGGAAGAGGTTGAC 59.377 50.000 0.00 0.00 0.00 3.18
603 604 2.243736 ACCCAAACAAGGAAGAGGTTGA 59.756 45.455 0.00 0.00 0.00 3.18
604 605 2.666317 ACCCAAACAAGGAAGAGGTTG 58.334 47.619 0.00 0.00 0.00 3.77
605 606 3.398318 AACCCAAACAAGGAAGAGGTT 57.602 42.857 0.00 0.00 0.00 3.50
606 607 3.031013 CAAACCCAAACAAGGAAGAGGT 58.969 45.455 0.00 0.00 0.00 3.85
607 608 2.224042 GCAAACCCAAACAAGGAAGAGG 60.224 50.000 0.00 0.00 0.00 3.69
608 609 2.430332 TGCAAACCCAAACAAGGAAGAG 59.570 45.455 0.00 0.00 0.00 2.85
609 610 2.461695 TGCAAACCCAAACAAGGAAGA 58.538 42.857 0.00 0.00 0.00 2.87
610 611 2.977772 TGCAAACCCAAACAAGGAAG 57.022 45.000 0.00 0.00 0.00 3.46
611 612 3.703001 TTTGCAAACCCAAACAAGGAA 57.297 38.095 8.05 0.00 30.28 3.36
612 613 3.703001 TTTTGCAAACCCAAACAAGGA 57.297 38.095 12.39 0.00 34.68 3.36
613 614 4.397417 TCATTTTTGCAAACCCAAACAAGG 59.603 37.500 12.39 3.62 34.68 3.61
614 615 5.106396 TGTCATTTTTGCAAACCCAAACAAG 60.106 36.000 12.39 0.00 34.68 3.16
615 616 4.761739 TGTCATTTTTGCAAACCCAAACAA 59.238 33.333 12.39 1.74 34.68 2.83
616 617 4.326826 TGTCATTTTTGCAAACCCAAACA 58.673 34.783 12.39 10.01 34.68 2.83
617 618 4.730324 GCTGTCATTTTTGCAAACCCAAAC 60.730 41.667 12.39 7.55 34.68 2.93
618 619 3.376546 GCTGTCATTTTTGCAAACCCAAA 59.623 39.130 12.39 3.74 33.21 3.28
619 620 2.941720 GCTGTCATTTTTGCAAACCCAA 59.058 40.909 12.39 4.14 0.00 4.12
620 621 2.559440 GCTGTCATTTTTGCAAACCCA 58.441 42.857 12.39 0.00 0.00 4.51
621 622 1.526464 CGCTGTCATTTTTGCAAACCC 59.474 47.619 12.39 0.00 0.00 4.11
622 623 2.200899 ACGCTGTCATTTTTGCAAACC 58.799 42.857 12.39 0.00 0.00 3.27
623 624 2.857152 TGACGCTGTCATTTTTGCAAAC 59.143 40.909 12.39 0.70 37.67 2.93
624 625 3.156511 TGACGCTGTCATTTTTGCAAA 57.843 38.095 8.05 8.05 37.67 3.68
625 626 2.859526 TGACGCTGTCATTTTTGCAA 57.140 40.000 0.00 0.00 37.67 4.08
634 635 4.082733 GCCTATATGTAGATGACGCTGTCA 60.083 45.833 12.53 12.53 46.90 3.58
635 636 4.156922 AGCCTATATGTAGATGACGCTGTC 59.843 45.833 0.00 2.32 0.00 3.51
636 637 4.082517 CAGCCTATATGTAGATGACGCTGT 60.083 45.833 13.10 0.00 35.39 4.40
637 638 4.156739 TCAGCCTATATGTAGATGACGCTG 59.843 45.833 14.39 14.39 38.49 5.18
638 639 4.336280 TCAGCCTATATGTAGATGACGCT 58.664 43.478 0.00 0.00 0.00 5.07
639 640 4.703645 TCAGCCTATATGTAGATGACGC 57.296 45.455 0.00 0.00 0.00 5.19
640 641 5.039984 GCATCAGCCTATATGTAGATGACG 58.960 45.833 0.00 0.00 35.98 4.35
641 642 5.039984 CGCATCAGCCTATATGTAGATGAC 58.960 45.833 0.00 0.00 35.98 3.06
642 643 4.440663 GCGCATCAGCCTATATGTAGATGA 60.441 45.833 0.30 2.92 35.98 2.92
643 644 3.801050 GCGCATCAGCCTATATGTAGATG 59.199 47.826 0.30 0.00 37.52 2.90
644 645 3.448660 TGCGCATCAGCCTATATGTAGAT 59.551 43.478 5.66 0.00 37.52 1.98
645 646 2.825532 TGCGCATCAGCCTATATGTAGA 59.174 45.455 5.66 0.00 37.52 2.59
646 647 3.185330 CTGCGCATCAGCCTATATGTAG 58.815 50.000 12.24 0.00 35.78 2.74
647 648 2.562738 ACTGCGCATCAGCCTATATGTA 59.437 45.455 12.24 0.00 46.76 2.29
648 649 1.345741 ACTGCGCATCAGCCTATATGT 59.654 47.619 12.24 0.00 46.76 2.29
649 650 2.090400 ACTGCGCATCAGCCTATATG 57.910 50.000 12.24 0.00 46.76 1.78
650 651 2.810274 CAAACTGCGCATCAGCCTATAT 59.190 45.455 12.24 0.00 46.76 0.86
651 652 2.158971 TCAAACTGCGCATCAGCCTATA 60.159 45.455 12.24 0.00 46.76 1.31
652 653 1.019673 CAAACTGCGCATCAGCCTAT 58.980 50.000 12.24 0.00 46.76 2.57
653 654 0.036483 TCAAACTGCGCATCAGCCTA 60.036 50.000 12.24 0.00 46.76 3.93
654 655 1.302752 TCAAACTGCGCATCAGCCT 60.303 52.632 12.24 0.00 46.76 4.58
655 656 1.136147 CTCAAACTGCGCATCAGCC 59.864 57.895 12.24 0.00 46.76 4.85
656 657 1.513586 GCTCAAACTGCGCATCAGC 60.514 57.895 12.24 10.45 46.76 4.26
658 659 1.629345 CGAGCTCAAACTGCGCATCA 61.629 55.000 12.24 0.00 28.96 3.07
659 660 1.059994 CGAGCTCAAACTGCGCATC 59.940 57.895 12.24 1.09 28.96 3.91
660 661 3.031964 GCGAGCTCAAACTGCGCAT 62.032 57.895 12.24 0.00 46.19 4.73
661 662 3.716006 GCGAGCTCAAACTGCGCA 61.716 61.111 15.40 10.98 46.19 6.09
662 663 4.783841 CGCGAGCTCAAACTGCGC 62.784 66.667 17.72 11.20 42.42 6.09
664 665 4.451652 GCCGCGAGCTCAAACTGC 62.452 66.667 15.40 7.51 38.99 4.40
665 666 3.793144 GGCCGCGAGCTCAAACTG 61.793 66.667 15.40 0.00 43.05 3.16
666 667 4.008933 AGGCCGCGAGCTCAAACT 62.009 61.111 15.40 1.02 43.05 2.66
667 668 3.793144 CAGGCCGCGAGCTCAAAC 61.793 66.667 15.40 1.13 43.05 2.93
679 680 4.666253 TGGCACAGCTTCCAGGCC 62.666 66.667 0.00 0.00 44.82 5.19
690 691 1.901833 TGAGCTGAGTATTCTGGCACA 59.098 47.619 0.00 4.14 0.00 4.57
691 692 2.093764 ACTGAGCTGAGTATTCTGGCAC 60.094 50.000 3.14 2.11 0.00 5.01
692 693 2.182827 ACTGAGCTGAGTATTCTGGCA 58.817 47.619 3.14 0.00 0.00 4.92
693 694 2.935201 CAACTGAGCTGAGTATTCTGGC 59.065 50.000 6.17 0.00 0.00 4.85
694 695 2.935201 GCAACTGAGCTGAGTATTCTGG 59.065 50.000 6.17 0.00 0.00 3.86
695 696 3.859443 AGCAACTGAGCTGAGTATTCTG 58.141 45.455 6.17 2.02 44.66 3.02
696 697 3.768757 AGAGCAACTGAGCTGAGTATTCT 59.231 43.478 6.17 7.25 46.75 2.40
697 698 4.122143 AGAGCAACTGAGCTGAGTATTC 57.878 45.455 6.17 4.98 46.75 1.75
698 699 4.252073 CAAGAGCAACTGAGCTGAGTATT 58.748 43.478 6.17 0.00 46.75 1.89
699 700 3.859443 CAAGAGCAACTGAGCTGAGTAT 58.141 45.455 6.17 0.00 46.75 2.12
700 701 2.611473 GCAAGAGCAACTGAGCTGAGTA 60.611 50.000 6.17 0.00 46.75 2.59
701 702 1.877258 GCAAGAGCAACTGAGCTGAGT 60.877 52.381 0.00 0.00 46.75 3.41
702 703 0.797542 GCAAGAGCAACTGAGCTGAG 59.202 55.000 0.00 0.00 46.75 3.35
703 704 2.924185 GCAAGAGCAACTGAGCTGA 58.076 52.632 0.00 0.00 46.75 4.26
714 715 1.598924 GCATCGCCTAATTGCAAGAGC 60.599 52.381 4.94 4.03 42.57 4.09
715 716 1.672363 TGCATCGCCTAATTGCAAGAG 59.328 47.619 4.94 4.68 42.95 2.85
716 717 1.748950 TGCATCGCCTAATTGCAAGA 58.251 45.000 4.94 0.00 42.95 3.02
719 720 3.523606 AATTTGCATCGCCTAATTGCA 57.476 38.095 0.00 0.00 44.12 4.08
720 721 4.863152 AAAATTTGCATCGCCTAATTGC 57.137 36.364 0.00 0.00 36.91 3.56
721 722 7.697352 TGATAAAATTTGCATCGCCTAATTG 57.303 32.000 0.00 0.00 0.00 2.32
724 725 9.979578 AAATATGATAAAATTTGCATCGCCTAA 57.020 25.926 0.00 0.00 0.00 2.69
725 726 9.979578 AAAATATGATAAAATTTGCATCGCCTA 57.020 25.926 0.00 0.00 0.00 3.93
726 727 8.891671 AAAATATGATAAAATTTGCATCGCCT 57.108 26.923 0.00 0.00 0.00 5.52
727 728 8.763356 TGAAAATATGATAAAATTTGCATCGCC 58.237 29.630 0.00 0.00 27.81 5.54
775 776 7.382759 GCGCCCGGATTTTGAAAATAATAATAA 59.617 33.333 0.73 0.00 0.00 1.40
778 779 5.044558 GCGCCCGGATTTTGAAAATAATAA 58.955 37.500 0.73 0.00 0.00 1.40
781 782 2.494073 AGCGCCCGGATTTTGAAAATAA 59.506 40.909 0.73 0.00 0.00 1.40
782 783 2.096248 AGCGCCCGGATTTTGAAAATA 58.904 42.857 0.73 0.00 0.00 1.40
783 784 0.894835 AGCGCCCGGATTTTGAAAAT 59.105 45.000 0.73 2.27 0.00 1.82
784 785 1.535833 TAGCGCCCGGATTTTGAAAA 58.464 45.000 0.73 0.00 0.00 2.29
785 786 1.757682 ATAGCGCCCGGATTTTGAAA 58.242 45.000 0.73 0.00 0.00 2.69
849 850 9.965902 AGGAAATCACAATCTATGAGTAGTTTT 57.034 29.630 0.00 0.00 0.00 2.43
852 853 7.345653 TGGAGGAAATCACAATCTATGAGTAGT 59.654 37.037 0.00 0.00 0.00 2.73
853 854 7.655328 GTGGAGGAAATCACAATCTATGAGTAG 59.345 40.741 0.00 0.00 34.32 2.57
854 855 7.125659 TGTGGAGGAAATCACAATCTATGAGTA 59.874 37.037 0.00 0.00 40.43 2.59
855 856 6.070021 TGTGGAGGAAATCACAATCTATGAGT 60.070 38.462 0.00 0.00 40.43 3.41
856 857 6.351711 TGTGGAGGAAATCACAATCTATGAG 58.648 40.000 0.00 0.00 40.43 2.90
857 858 6.312141 TGTGGAGGAAATCACAATCTATGA 57.688 37.500 0.00 0.00 40.43 2.15
858 859 7.423199 CAATGTGGAGGAAATCACAATCTATG 58.577 38.462 0.00 0.00 45.39 2.23
859 860 6.040166 GCAATGTGGAGGAAATCACAATCTAT 59.960 38.462 0.00 0.00 45.39 1.98
860 861 5.357878 GCAATGTGGAGGAAATCACAATCTA 59.642 40.000 0.00 0.00 45.39 1.98
861 862 4.159135 GCAATGTGGAGGAAATCACAATCT 59.841 41.667 0.00 0.00 45.39 2.40
862 863 4.427312 GCAATGTGGAGGAAATCACAATC 58.573 43.478 0.00 0.00 45.39 2.67
917 918 3.186001 GGACATATGAATGCGCTTCAGAG 59.814 47.826 21.13 16.43 46.71 3.35
918 919 3.133691 GGACATATGAATGCGCTTCAGA 58.866 45.455 21.13 18.48 46.71 3.27
919 920 2.874086 TGGACATATGAATGCGCTTCAG 59.126 45.455 21.13 13.46 46.71 3.02
921 922 3.313526 AGTTGGACATATGAATGCGCTTC 59.686 43.478 10.38 10.69 36.50 3.86
922 923 3.282021 AGTTGGACATATGAATGCGCTT 58.718 40.909 10.38 0.00 36.50 4.68
923 924 2.874701 GAGTTGGACATATGAATGCGCT 59.125 45.455 10.38 0.22 36.50 5.92
928 929 4.956075 GGGTTTGGAGTTGGACATATGAAT 59.044 41.667 10.38 0.00 0.00 2.57
930 931 3.332187 TGGGTTTGGAGTTGGACATATGA 59.668 43.478 10.38 0.00 0.00 2.15
1044 1045 1.448922 GAGCGAGGTCAGCGGTATCT 61.449 60.000 0.00 0.00 39.81 1.98
1047 1048 2.045242 AGAGCGAGGTCAGCGGTA 60.045 61.111 5.06 0.00 39.81 4.02
1442 1443 6.069088 TGGGTCCTATATTTTGGTCAAGTGAT 60.069 38.462 0.00 0.00 0.00 3.06
1518 1520 2.404923 TCACAAACAAGGAACACCGA 57.595 45.000 0.00 0.00 0.00 4.69
1571 1573 4.256920 CATCTCACCAGAAACCCTGTTAG 58.743 47.826 0.00 0.00 41.33 2.34
1791 1799 7.595819 TTATGTGAGTTTGTTCCCTGAAAAT 57.404 32.000 0.00 0.00 0.00 1.82
2139 2148 9.030301 CGATACAACAATTTCTTTTTGTTTCCT 57.970 29.630 0.00 0.00 42.96 3.36
2155 2164 6.795098 AATTTGACTACAGCGATACAACAA 57.205 33.333 0.00 0.00 0.00 2.83
2340 2351 4.082949 GGGGAAGACGGTGTTCAAAATAAG 60.083 45.833 18.25 0.00 0.00 1.73
2367 2378 3.248602 GCATTTGTAAGCGATACCTCCAG 59.751 47.826 0.00 0.00 33.27 3.86
2378 2389 5.277538 GCATACCTCACTAGCATTTGTAAGC 60.278 44.000 0.00 0.00 0.00 3.09
2503 2514 5.296748 TGAGTTTTCGTCATGAGTGAATGA 58.703 37.500 10.28 2.11 35.80 2.57
2647 2658 7.741554 ATGAGTTACTTACCTGAGAGGAAAT 57.258 36.000 0.00 0.00 37.67 2.17
2699 2712 1.762957 GTGCTATGAGGCTGGGAAGTA 59.237 52.381 0.00 0.00 0.00 2.24
2731 2744 5.047660 TCAAATGTGTTAACCCTGTAATGGC 60.048 40.000 2.48 0.00 0.00 4.40
2987 3001 3.562176 CCATGACTGGAGGGTAGCTTTTT 60.562 47.826 0.00 0.00 46.37 1.94
3014 3028 0.542702 AGGGTGGGAAACTGGCAATG 60.543 55.000 0.00 0.00 0.00 2.82
3015 3029 0.190815 AAGGGTGGGAAACTGGCAAT 59.809 50.000 0.00 0.00 0.00 3.56
3026 3040 0.038744 AAGACATGCAGAAGGGTGGG 59.961 55.000 0.00 0.00 0.00 4.61
3260 3275 7.935755 CACAGGATTAATTCAGATACCTCATGT 59.064 37.037 0.00 0.00 0.00 3.21
3297 3312 5.527214 GTGCCATACAAGCTACACATTATCA 59.473 40.000 0.00 0.00 0.00 2.15
3685 3715 3.382083 ACCAGAACCAACCTGAAAAGT 57.618 42.857 0.00 0.00 33.65 2.66
3989 4023 4.872664 TCAACGGTTCCGCATAAAAATTT 58.127 34.783 11.32 0.00 0.00 1.82
4126 4162 8.800370 ATGTCTCGAATAGCTCATCTCTAATA 57.200 34.615 0.00 0.00 0.00 0.98
4192 4228 5.122869 GTGCAATGATTCTTCTGTTAGCTGA 59.877 40.000 0.00 0.00 0.00 4.26
4195 4231 5.300969 TGTGCAATGATTCTTCTGTTAGC 57.699 39.130 0.00 0.00 0.00 3.09
4201 4237 4.147321 ACAACCTGTGCAATGATTCTTCT 58.853 39.130 0.00 0.00 0.00 2.85
4369 5211 7.885922 TGCTCACAAAAGGTAATTAACATCCTA 59.114 33.333 2.78 0.00 0.00 2.94
4588 5430 1.478654 GGCAGAACAGGAAGGTGGAAA 60.479 52.381 0.00 0.00 0.00 3.13
4709 5555 7.476540 TGACTTAAACTAGTTCAGATGGCTA 57.523 36.000 17.63 0.00 0.00 3.93
4985 5840 7.690952 TGTTGTGTTAACAAGTTAGAAAGGT 57.309 32.000 10.51 0.00 46.79 3.50
5004 5859 6.602803 TGGATGCAATTGTAGATGTATGTTGT 59.397 34.615 7.40 0.00 0.00 3.32
5008 5863 6.932960 TCTCTGGATGCAATTGTAGATGTATG 59.067 38.462 7.40 0.00 0.00 2.39
5182 6037 6.801539 TTTTCACACATTACTCAGATGGTC 57.198 37.500 0.00 0.00 0.00 4.02
5277 6132 6.153851 TGAACAGATTCTGAATTGGATGCATT 59.846 34.615 20.33 0.00 35.69 3.56
5527 6383 4.205587 AGACCAATTCAATCATCTCTGGC 58.794 43.478 0.00 0.00 0.00 4.85
5778 6634 9.389755 TGTATAGCACAAACATATTAGAAAGCA 57.610 29.630 0.00 0.00 32.95 3.91
5997 6862 7.086376 TCATGCATTTCTTGAACTCTTTAAGC 58.914 34.615 0.00 0.00 0.00 3.09
6076 6941 6.662414 AATGGAATATGTGTACACGTCAAG 57.338 37.500 23.67 0.00 0.00 3.02
6118 6983 0.893727 GTTACCCACCAACAGGCCAG 60.894 60.000 5.01 0.00 0.00 4.85
6225 7090 5.005394 CACTTTCGTCTCTTCGTCTTCAAAA 59.995 40.000 0.00 0.00 0.00 2.44
6255 7126 5.357878 ACAAGAAGTTTCATCTCAGCAACAA 59.642 36.000 0.00 0.00 0.00 2.83
6271 7142 5.710099 TGAAAGTTCCTGACAAACAAGAAGT 59.290 36.000 0.00 0.00 35.03 3.01
6272 7143 6.194796 TGAAAGTTCCTGACAAACAAGAAG 57.805 37.500 0.00 0.00 30.77 2.85
6273 7144 6.208599 AGTTGAAAGTTCCTGACAAACAAGAA 59.791 34.615 0.00 0.00 0.00 2.52
6274 7145 5.710099 AGTTGAAAGTTCCTGACAAACAAGA 59.290 36.000 0.00 0.00 0.00 3.02
6334 7205 1.195115 ATTTACAGCTCGCCTCCTCA 58.805 50.000 0.00 0.00 0.00 3.86
6458 7329 4.747108 CACAATAATCAAGTAGAGAGGCCG 59.253 45.833 0.00 0.00 0.00 6.13
6485 7359 3.421844 GATTTAGTTTGGTCCACAGGCT 58.578 45.455 0.00 0.00 0.00 4.58
6500 7374 5.401972 TCAAACTGCAATGCAAACGATTTAG 59.598 36.000 9.92 0.00 38.41 1.85
6501 7375 5.284864 TCAAACTGCAATGCAAACGATTTA 58.715 33.333 9.92 0.00 38.41 1.40
6502 7376 4.118410 TCAAACTGCAATGCAAACGATTT 58.882 34.783 9.92 2.64 38.41 2.17
6503 7377 3.715495 TCAAACTGCAATGCAAACGATT 58.285 36.364 9.92 0.00 38.41 3.34
6504 7378 3.004629 TCTCAAACTGCAATGCAAACGAT 59.995 39.130 9.92 0.00 38.41 3.73
6505 7379 2.357323 TCTCAAACTGCAATGCAAACGA 59.643 40.909 9.92 2.89 38.41 3.85
6714 7588 7.395489 AGCATTTCACATCAAAAGACTATTCCT 59.605 33.333 0.00 0.00 0.00 3.36
6715 7589 7.542025 AGCATTTCACATCAAAAGACTATTCC 58.458 34.615 0.00 0.00 0.00 3.01
6851 7725 2.990967 CCACAGGCCCATTGCGTT 60.991 61.111 0.00 0.00 42.61 4.84
7018 7892 0.761802 GCCCTTCATCCTCGGAATCT 59.238 55.000 0.00 0.00 0.00 2.40
7035 7909 3.697166 TGTTCCTAAGAAAGGGAATGCC 58.303 45.455 0.00 0.00 46.55 4.40
7051 7925 6.279882 TGTGAAATCCTGTTCATTTTGTTCC 58.720 36.000 0.00 0.00 39.61 3.62
7120 7994 8.241497 TGCTCTTATATTAGTTTACGAAGGGA 57.759 34.615 0.00 0.00 0.00 4.20
7121 7995 9.490379 AATGCTCTTATATTAGTTTACGAAGGG 57.510 33.333 0.00 0.00 0.00 3.95
7152 8026 9.865321 AGAGCGTTTACATAACTACTTTAATGA 57.135 29.630 0.00 0.00 0.00 2.57
7167 8041 9.236691 CCGTAAACTAATATAAGAGCGTTTACA 57.763 33.333 17.54 0.00 43.00 2.41
7168 8042 9.450807 TCCGTAAACTAATATAAGAGCGTTTAC 57.549 33.333 10.96 10.96 41.12 2.01
7169 8043 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
7170 8044 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
7171 8045 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
7172 8046 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
7173 8047 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
7174 8048 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
7175 8049 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
7176 8050 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
7177 8051 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
7178 8052 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
7179 8053 8.995027 TTGTACTCCCTCCGTAAACTAATATA 57.005 34.615 0.00 0.00 0.00 0.86
7180 8054 7.902920 TTGTACTCCCTCCGTAAACTAATAT 57.097 36.000 0.00 0.00 0.00 1.28
7181 8055 7.716799 TTTGTACTCCCTCCGTAAACTAATA 57.283 36.000 0.00 0.00 0.00 0.98
7182 8056 6.610075 TTTGTACTCCCTCCGTAAACTAAT 57.390 37.500 0.00 0.00 0.00 1.73
7183 8057 6.267471 TCTTTTGTACTCCCTCCGTAAACTAA 59.733 38.462 0.00 0.00 0.00 2.24
7184 8058 5.774690 TCTTTTGTACTCCCTCCGTAAACTA 59.225 40.000 0.00 0.00 0.00 2.24
7185 8059 4.590222 TCTTTTGTACTCCCTCCGTAAACT 59.410 41.667 0.00 0.00 0.00 2.66
7186 8060 4.886579 TCTTTTGTACTCCCTCCGTAAAC 58.113 43.478 0.00 0.00 0.00 2.01
7187 8061 4.590222 ACTCTTTTGTACTCCCTCCGTAAA 59.410 41.667 0.00 0.00 0.00 2.01
7188 8062 4.154942 ACTCTTTTGTACTCCCTCCGTAA 58.845 43.478 0.00 0.00 0.00 3.18
7189 8063 3.771216 ACTCTTTTGTACTCCCTCCGTA 58.229 45.455 0.00 0.00 0.00 4.02
7190 8064 2.606378 ACTCTTTTGTACTCCCTCCGT 58.394 47.619 0.00 0.00 0.00 4.69
7191 8065 3.762823 ACTACTCTTTTGTACTCCCTCCG 59.237 47.826 0.00 0.00 0.00 4.63
7192 8066 7.421087 AATACTACTCTTTTGTACTCCCTCC 57.579 40.000 0.00 0.00 0.00 4.30
7195 8069 9.543783 CCAATAATACTACTCTTTTGTACTCCC 57.456 37.037 0.00 0.00 0.00 4.30
7196 8070 9.543783 CCCAATAATACTACTCTTTTGTACTCC 57.456 37.037 0.00 0.00 0.00 3.85
7197 8071 9.043079 GCCCAATAATACTACTCTTTTGTACTC 57.957 37.037 0.00 0.00 0.00 2.59
7198 8072 8.769359 AGCCCAATAATACTACTCTTTTGTACT 58.231 33.333 0.00 0.00 0.00 2.73
7199 8073 8.959705 AGCCCAATAATACTACTCTTTTGTAC 57.040 34.615 0.00 0.00 0.00 2.90
7200 8074 9.969001 AAAGCCCAATAATACTACTCTTTTGTA 57.031 29.630 0.00 0.00 0.00 2.41
7201 8075 8.879427 AAAGCCCAATAATACTACTCTTTTGT 57.121 30.769 0.00 0.00 0.00 2.83
7287 8164 9.569122 AGGCTAAACTTTTCACTTAATTACTGA 57.431 29.630 0.00 0.00 0.00 3.41
7288 8165 9.827411 GAGGCTAAACTTTTCACTTAATTACTG 57.173 33.333 0.00 0.00 0.00 2.74
7289 8166 9.569122 TGAGGCTAAACTTTTCACTTAATTACT 57.431 29.630 0.00 0.00 0.00 2.24
7290 8167 9.608617 GTGAGGCTAAACTTTTCACTTAATTAC 57.391 33.333 0.00 0.00 36.21 1.89
7291 8168 8.789762 GGTGAGGCTAAACTTTTCACTTAATTA 58.210 33.333 0.00 0.00 38.49 1.40
7292 8169 7.255836 GGGTGAGGCTAAACTTTTCACTTAATT 60.256 37.037 0.00 0.00 38.49 1.40
7293 8170 6.208797 GGGTGAGGCTAAACTTTTCACTTAAT 59.791 38.462 0.00 0.00 38.49 1.40
7294 8171 5.533528 GGGTGAGGCTAAACTTTTCACTTAA 59.466 40.000 0.00 0.00 38.49 1.85
7295 8172 5.067954 GGGTGAGGCTAAACTTTTCACTTA 58.932 41.667 0.00 0.00 38.49 2.24
7296 8173 3.889538 GGGTGAGGCTAAACTTTTCACTT 59.110 43.478 0.00 0.00 38.49 3.16
7297 8174 3.138468 AGGGTGAGGCTAAACTTTTCACT 59.862 43.478 0.00 0.00 38.49 3.41
7365 8242 2.774439 AATCAACACGTGACCTTTGC 57.226 45.000 25.01 0.00 39.72 3.68
7396 8273 1.400494 GCCACTTTTCAACACGTGACT 59.600 47.619 25.01 5.75 35.39 3.41
7409 8286 1.147376 TGGTACAGTGCGCCACTTT 59.853 52.632 4.18 4.40 42.59 2.66
7420 8297 3.243636 ACAGGTTACGACAAGTGGTACAG 60.244 47.826 0.00 0.00 41.80 2.74
7477 8355 7.602265 TCGACACATGATTCAAGAGATAAAACA 59.398 33.333 0.00 0.00 0.00 2.83
7484 8362 6.165577 TGATTTCGACACATGATTCAAGAGA 58.834 36.000 0.00 0.00 0.00 3.10
7497 8375 6.148948 TGAAAATGGTTCATGATTTCGACAC 58.851 36.000 11.97 0.00 33.74 3.67
7514 8392 6.301108 CGTGAAAAATCCAGCAATGAAAATG 58.699 36.000 0.00 0.00 0.00 2.32
7515 8393 5.106987 GCGTGAAAAATCCAGCAATGAAAAT 60.107 36.000 0.00 0.00 0.00 1.82
7520 8398 1.994779 GGCGTGAAAAATCCAGCAATG 59.005 47.619 0.00 0.00 0.00 2.82
7525 8403 1.438651 TCTCGGCGTGAAAAATCCAG 58.561 50.000 9.46 0.00 0.00 3.86
7538 8416 3.247006 TGTAGTTTCCAAGATCTCGGC 57.753 47.619 0.00 0.00 0.00 5.54
7554 8432 8.621286 GTCAAAACCTATTAACATGGGATGTAG 58.379 37.037 0.00 0.00 44.07 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.