Multiple sequence alignment - TraesCS1D01G195200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G195200 chr1D 100.000 5599 0 0 1 5599 273904671 273910269 0.000000e+00 10340.0
1 TraesCS1D01G195200 chr1D 87.402 635 44 10 4928 5562 339046650 339047248 0.000000e+00 697.0
2 TraesCS1D01G195200 chr1D 84.642 293 28 9 4929 5218 41450893 41450615 5.530000e-70 276.0
3 TraesCS1D01G195200 chr1A 94.234 2064 70 17 2595 4649 346447645 346449668 0.000000e+00 3107.0
4 TraesCS1D01G195200 chr1A 94.670 938 42 6 1539 2475 346446718 346447648 0.000000e+00 1448.0
5 TraesCS1D01G195200 chr1A 86.644 891 69 17 674 1542 346445368 346446230 0.000000e+00 941.0
6 TraesCS1D01G195200 chr1A 96.190 210 6 2 4720 4927 346449661 346449870 5.370000e-90 342.0
7 TraesCS1D01G195200 chr1B 93.091 1650 73 19 856 2475 373260608 373262246 0.000000e+00 2377.0
8 TraesCS1D01G195200 chr1B 90.292 1164 58 26 3773 4930 373263711 373264825 0.000000e+00 1472.0
9 TraesCS1D01G195200 chr1B 90.029 1023 57 7 2720 3739 373262742 373263722 0.000000e+00 1282.0
10 TraesCS1D01G195200 chr1B 92.857 126 6 1 2595 2717 373262243 373262368 4.460000e-41 180.0
11 TraesCS1D01G195200 chr1B 96.875 32 1 0 4068 4099 480370016 480369985 3.000000e-03 54.7
12 TraesCS1D01G195200 chr2D 96.440 618 19 3 1 617 21649776 21649161 0.000000e+00 1016.0
13 TraesCS1D01G195200 chr2D 92.532 616 33 7 3 617 20309584 20308981 0.000000e+00 870.0
14 TraesCS1D01G195200 chr2D 91.158 622 42 8 1 618 590223263 590222651 0.000000e+00 832.0
15 TraesCS1D01G195200 chr2D 89.314 627 46 5 4922 5547 54023768 54024374 0.000000e+00 767.0
16 TraesCS1D01G195200 chr6D 94.992 619 29 2 1 618 301474209 301473592 0.000000e+00 970.0
17 TraesCS1D01G195200 chr6D 89.683 126 13 0 4928 5053 12140815 12140940 1.610000e-35 161.0
18 TraesCS1D01G195200 chr6D 89.831 118 12 0 4927 5044 199668252 199668369 9.720000e-33 152.0
19 TraesCS1D01G195200 chr6D 78.333 180 28 8 620 796 471262062 471262233 7.670000e-19 106.0
20 TraesCS1D01G195200 chr4D 92.097 620 41 8 1 618 133467043 133467656 0.000000e+00 867.0
21 TraesCS1D01G195200 chr4D 85.763 295 25 9 4927 5218 4062003 4061723 4.240000e-76 296.0
22 TraesCS1D01G195200 chr4D 89.683 126 13 0 4928 5053 424078107 424078232 1.610000e-35 161.0
23 TraesCS1D01G195200 chr4D 88.889 126 14 0 4928 5053 424079357 424079232 7.510000e-34 156.0
24 TraesCS1D01G195200 chr5D 91.935 620 37 7 1 619 311754609 311755216 0.000000e+00 856.0
25 TraesCS1D01G195200 chr5D 91.054 626 34 13 1 617 520742242 520742854 0.000000e+00 826.0
26 TraesCS1D01G195200 chr5D 97.059 34 1 0 632 665 932308 932275 2.180000e-04 58.4
27 TraesCS1D01G195200 chr5D 97.059 34 0 1 2472 2505 275915140 275915108 7.840000e-04 56.5
28 TraesCS1D01G195200 chr3D 95.992 524 17 4 98 619 167038572 167038051 0.000000e+00 848.0
29 TraesCS1D01G195200 chr3D 90.453 618 46 9 1 617 492670738 492671343 0.000000e+00 802.0
30 TraesCS1D01G195200 chr3D 84.694 294 28 9 4928 5218 442500782 442501061 1.540000e-70 278.0
31 TraesCS1D01G195200 chr3D 89.683 126 13 0 4928 5053 456100802 456100927 1.610000e-35 161.0
32 TraesCS1D01G195200 chr3B 87.351 672 66 7 4928 5599 798444532 798443880 0.000000e+00 752.0
33 TraesCS1D01G195200 chr3B 86.667 60 2 1 637 690 563392551 563392610 1.680000e-05 62.1
34 TraesCS1D01G195200 chr5B 86.299 635 48 12 4928 5560 595288016 595287419 0.000000e+00 654.0
35 TraesCS1D01G195200 chr2B 84.286 630 56 28 1 617 757331823 757332422 4.860000e-160 575.0
36 TraesCS1D01G195200 chr3A 86.623 456 46 7 4959 5411 186052564 186052121 1.810000e-134 490.0
37 TraesCS1D01G195200 chrUn 84.459 296 29 9 4926 5218 10147370 10147089 5.530000e-70 276.0
38 TraesCS1D01G195200 chr4A 80.826 339 43 15 5249 5566 615361213 615360876 4.330000e-61 246.0
39 TraesCS1D01G195200 chr7B 77.149 477 66 24 4928 5392 488397839 488398284 2.610000e-58 237.0
40 TraesCS1D01G195200 chr7B 84.615 65 7 1 630 694 165300901 165300840 1.680000e-05 62.1
41 TraesCS1D01G195200 chr7D 86.765 136 16 2 4928 5062 28068727 28068861 3.490000e-32 150.0
42 TraesCS1D01G195200 chr7D 80.702 171 29 4 631 798 448509727 448509558 4.550000e-26 130.0
43 TraesCS1D01G195200 chr7D 100.000 31 0 0 759 789 611317343 611317313 2.180000e-04 58.4
44 TraesCS1D01G195200 chr7D 96.970 33 1 0 638 670 63936017 63935985 7.840000e-04 56.5
45 TraesCS1D01G195200 chr5A 76.842 190 27 8 620 793 581297359 581297547 2.150000e-14 91.6
46 TraesCS1D01G195200 chr5A 89.796 49 4 1 4051 4099 40094736 40094689 1.680000e-05 62.1
47 TraesCS1D01G195200 chr5A 100.000 28 0 0 4072 4099 566290029 566290056 1.000000e-02 52.8
48 TraesCS1D01G195200 chr6B 82.955 88 10 5 661 745 213235333 213235248 2.160000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G195200 chr1D 273904671 273910269 5598 False 10340.00 10340 100.00000 1 5599 1 chr1D.!!$F1 5598
1 TraesCS1D01G195200 chr1D 339046650 339047248 598 False 697.00 697 87.40200 4928 5562 1 chr1D.!!$F2 634
2 TraesCS1D01G195200 chr1A 346445368 346449870 4502 False 1459.50 3107 92.93450 674 4927 4 chr1A.!!$F1 4253
3 TraesCS1D01G195200 chr1B 373260608 373264825 4217 False 1327.75 2377 91.56725 856 4930 4 chr1B.!!$F1 4074
4 TraesCS1D01G195200 chr2D 21649161 21649776 615 True 1016.00 1016 96.44000 1 617 1 chr2D.!!$R2 616
5 TraesCS1D01G195200 chr2D 20308981 20309584 603 True 870.00 870 92.53200 3 617 1 chr2D.!!$R1 614
6 TraesCS1D01G195200 chr2D 590222651 590223263 612 True 832.00 832 91.15800 1 618 1 chr2D.!!$R3 617
7 TraesCS1D01G195200 chr2D 54023768 54024374 606 False 767.00 767 89.31400 4922 5547 1 chr2D.!!$F1 625
8 TraesCS1D01G195200 chr6D 301473592 301474209 617 True 970.00 970 94.99200 1 618 1 chr6D.!!$R1 617
9 TraesCS1D01G195200 chr4D 133467043 133467656 613 False 867.00 867 92.09700 1 618 1 chr4D.!!$F1 617
10 TraesCS1D01G195200 chr5D 311754609 311755216 607 False 856.00 856 91.93500 1 619 1 chr5D.!!$F1 618
11 TraesCS1D01G195200 chr5D 520742242 520742854 612 False 826.00 826 91.05400 1 617 1 chr5D.!!$F2 616
12 TraesCS1D01G195200 chr3D 167038051 167038572 521 True 848.00 848 95.99200 98 619 1 chr3D.!!$R1 521
13 TraesCS1D01G195200 chr3D 492670738 492671343 605 False 802.00 802 90.45300 1 617 1 chr3D.!!$F3 616
14 TraesCS1D01G195200 chr3B 798443880 798444532 652 True 752.00 752 87.35100 4928 5599 1 chr3B.!!$R1 671
15 TraesCS1D01G195200 chr5B 595287419 595288016 597 True 654.00 654 86.29900 4928 5560 1 chr5B.!!$R1 632
16 TraesCS1D01G195200 chr2B 757331823 757332422 599 False 575.00 575 84.28600 1 617 1 chr2B.!!$F1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
948 994 0.392595 GAAGCGAAATCCCCTTCCGT 60.393 55.000 0.00 0.00 31.16 4.69 F
1078 1128 0.036010 CAGTGATGAAGGGCCGTCTT 60.036 55.000 20.17 14.04 0.00 3.01 F
1597 2162 0.173708 CGGTCCACTCCTACTTGAGC 59.826 60.000 0.00 0.00 35.72 4.26 F
2487 3054 0.790993 AAGGTACTCCCTCTGTCCCA 59.209 55.000 0.00 0.00 45.47 4.37 F
2489 3056 1.151413 AGGTACTCCCTCTGTCCCAAA 59.849 52.381 0.00 0.00 40.71 3.28 F
3721 4669 0.253044 TCTCTAGGCACACCATTGGC 59.747 55.000 1.54 0.00 42.35 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1797 2362 1.063469 CTTCAAAACTGAACGCCGTGT 59.937 47.619 0.00 0.00 0.00 4.49 R
2891 3832 1.602377 ACCTTTTGCTTAGTGACACGC 59.398 47.619 0.00 0.00 0.00 5.34 R
3031 3972 2.632377 AGGAACATACATCACCAAGCG 58.368 47.619 0.00 0.00 0.00 4.68 R
3664 4612 0.111639 GTCCAAAACCTGCCCTGGTA 59.888 55.000 0.00 0.00 39.83 3.25 R
3993 4941 0.384230 AACATTTGTTCGCTGCGTCG 60.384 50.000 22.48 6.27 31.64 5.12 R
5346 6302 0.957888 GAGGAGCTTGAGGTGGTTGC 60.958 60.000 0.00 0.00 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
479 517 2.163601 AACCTCGTAAGTCGTGCCCC 62.164 60.000 0.00 0.00 40.80 5.80
481 519 1.290955 CTCGTAAGTCGTGCCCCAA 59.709 57.895 0.00 0.00 40.80 4.12
482 520 1.005867 TCGTAAGTCGTGCCCCAAC 60.006 57.895 0.00 0.00 40.80 3.77
619 660 5.202004 GGGAGAGAGATCAACCTAACAGTA 58.798 45.833 0.00 0.00 0.00 2.74
620 661 5.300792 GGGAGAGAGATCAACCTAACAGTAG 59.699 48.000 0.00 0.00 0.00 2.57
621 662 5.889289 GGAGAGAGATCAACCTAACAGTAGT 59.111 44.000 0.00 0.00 0.00 2.73
622 663 7.055378 GGAGAGAGATCAACCTAACAGTAGTA 58.945 42.308 0.00 0.00 0.00 1.82
623 664 7.556996 GGAGAGAGATCAACCTAACAGTAGTAA 59.443 40.741 0.00 0.00 0.00 2.24
624 665 8.283699 AGAGAGATCAACCTAACAGTAGTAAC 57.716 38.462 0.00 0.00 0.00 2.50
625 666 7.889073 AGAGAGATCAACCTAACAGTAGTAACA 59.111 37.037 0.00 0.00 0.00 2.41
626 667 7.828712 AGAGATCAACCTAACAGTAGTAACAC 58.171 38.462 0.00 0.00 0.00 3.32
627 668 6.932947 AGATCAACCTAACAGTAGTAACACC 58.067 40.000 0.00 0.00 0.00 4.16
628 669 6.495872 AGATCAACCTAACAGTAGTAACACCA 59.504 38.462 0.00 0.00 0.00 4.17
629 670 5.846203 TCAACCTAACAGTAGTAACACCAC 58.154 41.667 0.00 0.00 0.00 4.16
630 671 4.879197 ACCTAACAGTAGTAACACCACC 57.121 45.455 0.00 0.00 0.00 4.61
631 672 3.580022 ACCTAACAGTAGTAACACCACCC 59.420 47.826 0.00 0.00 0.00 4.61
632 673 3.836562 CCTAACAGTAGTAACACCACCCT 59.163 47.826 0.00 0.00 0.00 4.34
633 674 3.764237 AACAGTAGTAACACCACCCTG 57.236 47.619 0.00 0.00 0.00 4.45
634 675 2.966915 ACAGTAGTAACACCACCCTGA 58.033 47.619 0.00 0.00 0.00 3.86
635 676 3.517612 ACAGTAGTAACACCACCCTGAT 58.482 45.455 0.00 0.00 0.00 2.90
636 677 4.680407 ACAGTAGTAACACCACCCTGATA 58.320 43.478 0.00 0.00 0.00 2.15
637 678 5.278061 ACAGTAGTAACACCACCCTGATAT 58.722 41.667 0.00 0.00 0.00 1.63
638 679 5.724854 ACAGTAGTAACACCACCCTGATATT 59.275 40.000 0.00 0.00 0.00 1.28
639 680 6.214819 ACAGTAGTAACACCACCCTGATATTT 59.785 38.462 0.00 0.00 0.00 1.40
640 681 7.110155 CAGTAGTAACACCACCCTGATATTTT 58.890 38.462 0.00 0.00 0.00 1.82
641 682 7.610305 CAGTAGTAACACCACCCTGATATTTTT 59.390 37.037 0.00 0.00 0.00 1.94
642 683 8.828751 AGTAGTAACACCACCCTGATATTTTTA 58.171 33.333 0.00 0.00 0.00 1.52
643 684 9.623000 GTAGTAACACCACCCTGATATTTTTAT 57.377 33.333 0.00 0.00 0.00 1.40
690 731 7.068955 CGAAACCCAAAAATATTGAAACTTGC 58.931 34.615 0.00 0.00 0.00 4.01
695 736 6.316319 CCAAAAATATTGAAACTTGCCATGC 58.684 36.000 0.00 0.00 0.00 4.06
708 749 5.772521 ACTTGCCATGCTTTACAACTAAAG 58.227 37.500 0.00 0.00 41.32 1.85
726 767 6.562518 ACTAAAGTTGCCGTCTCTAGATAAC 58.437 40.000 0.00 0.00 0.00 1.89
736 778 6.702282 GCCGTCTCTAGATAACTAAAATTGCT 59.298 38.462 0.00 0.00 0.00 3.91
764 806 1.202698 ACGCTAGGATGGGATTGCTTC 60.203 52.381 0.00 0.00 0.00 3.86
768 810 0.620556 AGGATGGGATTGCTTCGTGT 59.379 50.000 0.00 0.00 0.00 4.49
773 815 1.271325 TGGGATTGCTTCGTGTCACAT 60.271 47.619 3.42 0.00 0.00 3.21
793 835 5.918608 ACATGTGTGATACTTATCAGGGTC 58.081 41.667 0.00 0.00 42.84 4.46
794 836 5.163301 ACATGTGTGATACTTATCAGGGTCC 60.163 44.000 0.00 0.00 42.84 4.46
806 848 8.344939 ACTTATCAGGGTCCTAATTATTTGGA 57.655 34.615 4.10 4.10 0.00 3.53
808 850 5.646692 TCAGGGTCCTAATTATTTGGAGG 57.353 43.478 8.30 0.00 0.00 4.30
809 851 4.141251 TCAGGGTCCTAATTATTTGGAGGC 60.141 45.833 8.30 0.00 0.00 4.70
813 855 4.584743 GGTCCTAATTATTTGGAGGCAAGG 59.415 45.833 8.30 0.00 0.00 3.61
819 861 0.613012 ATTTGGAGGCAAGGCAGGTC 60.613 55.000 0.00 0.00 0.00 3.85
829 871 0.836400 AAGGCAGGTCGAAAGGGAGA 60.836 55.000 0.00 0.00 0.00 3.71
830 872 1.079057 GGCAGGTCGAAAGGGAGAC 60.079 63.158 0.00 0.00 36.70 3.36
831 873 1.545706 GGCAGGTCGAAAGGGAGACT 61.546 60.000 0.00 0.00 37.52 3.24
832 874 1.183549 GCAGGTCGAAAGGGAGACTA 58.816 55.000 0.00 0.00 37.52 2.59
833 875 1.135333 GCAGGTCGAAAGGGAGACTAG 59.865 57.143 0.00 0.00 37.52 2.57
835 877 1.639628 AGGTCGAAAGGGAGACTAGGA 59.360 52.381 0.00 0.00 37.52 2.94
836 878 2.025898 GGTCGAAAGGGAGACTAGGAG 58.974 57.143 0.00 0.00 37.52 3.69
837 879 2.025898 GTCGAAAGGGAGACTAGGAGG 58.974 57.143 0.00 0.00 34.74 4.30
838 880 1.063867 TCGAAAGGGAGACTAGGAGGG 60.064 57.143 0.00 0.00 0.00 4.30
839 881 1.063867 CGAAAGGGAGACTAGGAGGGA 60.064 57.143 0.00 0.00 0.00 4.20
840 882 2.390696 GAAAGGGAGACTAGGAGGGAC 58.609 57.143 0.00 0.00 0.00 4.46
842 884 0.930726 AGGGAGACTAGGAGGGACTG 59.069 60.000 0.00 0.00 41.55 3.51
843 885 0.632294 GGGAGACTAGGAGGGACTGT 59.368 60.000 0.00 0.00 41.55 3.55
844 886 1.410507 GGGAGACTAGGAGGGACTGTC 60.411 61.905 0.00 0.00 41.55 3.51
845 887 1.567175 GGAGACTAGGAGGGACTGTCT 59.433 57.143 7.85 0.00 41.55 3.41
852 894 2.753247 AGGAGGGACTGTCTGGAATAC 58.247 52.381 7.85 0.00 41.55 1.89
948 994 0.392595 GAAGCGAAATCCCCTTCCGT 60.393 55.000 0.00 0.00 31.16 4.69
949 995 0.676782 AAGCGAAATCCCCTTCCGTG 60.677 55.000 0.00 0.00 0.00 4.94
995 1045 3.595691 GATGATCTCGATTGCCGGT 57.404 52.632 1.90 0.00 39.14 5.28
1004 1054 1.153086 GATTGCCGGTGGAGATGCT 60.153 57.895 1.90 0.00 0.00 3.79
1029 1079 0.393944 GGAGGACCCCCGTTCAATTC 60.394 60.000 0.00 0.00 37.58 2.17
1078 1128 0.036010 CAGTGATGAAGGGCCGTCTT 60.036 55.000 20.17 14.04 0.00 3.01
1103 1153 2.881352 GTCCTCTGCGCGTGCTAC 60.881 66.667 23.16 8.63 43.34 3.58
1179 1229 1.205893 GTCAGCGAGGAGGATTTCTGT 59.794 52.381 0.00 0.00 0.00 3.41
1180 1230 1.205655 TCAGCGAGGAGGATTTCTGTG 59.794 52.381 0.00 0.00 0.00 3.66
1189 1239 1.980765 AGGATTTCTGTGAGCACCTCA 59.019 47.619 0.00 0.00 38.25 3.86
1190 1240 2.027377 AGGATTTCTGTGAGCACCTCAG 60.027 50.000 0.00 0.00 41.46 3.35
1215 1265 4.704103 TCCAGCAGGCCTCGTCCT 62.704 66.667 0.00 0.00 36.78 3.85
1317 1367 6.672593 AGCATCCAAGGTTATTATTTCCTCA 58.327 36.000 0.00 0.00 0.00 3.86
1321 1371 8.571336 CATCCAAGGTTATTATTTCCTCACATC 58.429 37.037 0.00 0.00 0.00 3.06
1357 1430 3.197766 TGATATCCCGTCTGTTTTCTGCT 59.802 43.478 0.00 0.00 0.00 4.24
1358 1431 4.404394 TGATATCCCGTCTGTTTTCTGCTA 59.596 41.667 0.00 0.00 0.00 3.49
1359 1432 2.743636 TCCCGTCTGTTTTCTGCTAG 57.256 50.000 0.00 0.00 0.00 3.42
1399 1472 3.817084 TCCTGCAAGTTTCTGATGAACTG 59.183 43.478 0.00 0.00 31.02 3.16
1491 1565 5.485620 TGACATGACTCTGAGAAAGGAATG 58.514 41.667 12.44 7.78 0.00 2.67
1507 1581 1.566298 AATGCCTCCCGGAAGCTCTT 61.566 55.000 0.73 0.84 0.00 2.85
1515 1589 1.118838 CCGGAAGCTCTTGAGGAGAT 58.881 55.000 0.00 0.00 44.45 2.75
1597 2162 0.173708 CGGTCCACTCCTACTTGAGC 59.826 60.000 0.00 0.00 35.72 4.26
1668 2233 5.336055 GCTCATACTCATAACGATGCCTAGT 60.336 44.000 0.00 0.00 32.62 2.57
1669 2234 6.650427 TCATACTCATAACGATGCCTAGTT 57.350 37.500 0.00 0.00 32.62 2.24
1670 2235 6.678878 TCATACTCATAACGATGCCTAGTTC 58.321 40.000 0.00 0.00 32.62 3.01
1671 2236 6.264518 TCATACTCATAACGATGCCTAGTTCA 59.735 38.462 0.00 0.00 32.62 3.18
1672 2237 4.938080 ACTCATAACGATGCCTAGTTCAG 58.062 43.478 0.00 0.00 32.62 3.02
1673 2238 3.717707 TCATAACGATGCCTAGTTCAGC 58.282 45.455 0.00 0.00 32.62 4.26
1797 2362 5.241403 TCCTTCTAGTTGCAAATCCTTGA 57.759 39.130 1.02 0.00 34.14 3.02
2063 2628 5.578336 AGCTTTTGTTTTTCTTCAGAACTGC 59.422 36.000 0.00 0.00 33.13 4.40
2079 2644 2.036387 ACTGCCCCTTGTTTTAACACC 58.964 47.619 0.00 0.00 38.92 4.16
2335 2902 8.986847 CATCAGATGTAGCTATGAAGGTTTAAG 58.013 37.037 1.74 0.00 34.60 1.85
2336 2903 8.306313 TCAGATGTAGCTATGAAGGTTTAAGA 57.694 34.615 0.00 0.00 34.60 2.10
2386 2953 6.405842 GGCTACCAATAACCTTGATCTTTTGG 60.406 42.308 0.00 0.00 38.43 3.28
2461 3028 4.220602 ACATGCCCTAAAGAAAACCATGTC 59.779 41.667 0.00 0.00 37.78 3.06
2476 3043 5.069501 ACCATGTCGAGTAAAAGGTACTC 57.930 43.478 3.84 3.84 38.49 2.59
2477 3044 4.081807 ACCATGTCGAGTAAAAGGTACTCC 60.082 45.833 7.71 0.00 38.49 3.85
2478 3045 4.430908 CATGTCGAGTAAAAGGTACTCCC 58.569 47.826 7.71 1.02 38.49 4.30
2480 3047 3.760684 TGTCGAGTAAAAGGTACTCCCTC 59.239 47.826 7.71 1.08 45.47 4.30
2481 3048 4.015764 GTCGAGTAAAAGGTACTCCCTCT 58.984 47.826 7.71 0.00 45.47 3.69
2482 3049 4.015084 TCGAGTAAAAGGTACTCCCTCTG 58.985 47.826 7.71 0.00 45.47 3.35
2483 3050 3.762823 CGAGTAAAAGGTACTCCCTCTGT 59.237 47.826 7.71 0.00 45.47 3.41
2484 3051 4.142425 CGAGTAAAAGGTACTCCCTCTGTC 60.142 50.000 7.71 0.00 45.47 3.51
2485 3052 4.095211 AGTAAAAGGTACTCCCTCTGTCC 58.905 47.826 0.00 0.00 45.47 4.02
2486 3053 1.954035 AAAGGTACTCCCTCTGTCCC 58.046 55.000 0.00 0.00 45.47 4.46
2487 3054 0.790993 AAGGTACTCCCTCTGTCCCA 59.209 55.000 0.00 0.00 45.47 4.37
2488 3055 0.790993 AGGTACTCCCTCTGTCCCAA 59.209 55.000 0.00 0.00 40.71 4.12
2489 3056 1.151413 AGGTACTCCCTCTGTCCCAAA 59.849 52.381 0.00 0.00 40.71 3.28
2490 3057 2.197465 GGTACTCCCTCTGTCCCAAAT 58.803 52.381 0.00 0.00 0.00 2.32
2491 3058 2.576648 GGTACTCCCTCTGTCCCAAATT 59.423 50.000 0.00 0.00 0.00 1.82
2492 3059 3.778629 GGTACTCCCTCTGTCCCAAATTA 59.221 47.826 0.00 0.00 0.00 1.40
2493 3060 4.412528 GGTACTCCCTCTGTCCCAAATTAT 59.587 45.833 0.00 0.00 0.00 1.28
2494 3061 5.605488 GGTACTCCCTCTGTCCCAAATTATA 59.395 44.000 0.00 0.00 0.00 0.98
2495 3062 6.100714 GGTACTCCCTCTGTCCCAAATTATAA 59.899 42.308 0.00 0.00 0.00 0.98
2496 3063 6.253946 ACTCCCTCTGTCCCAAATTATAAG 57.746 41.667 0.00 0.00 0.00 1.73
2497 3064 5.970640 ACTCCCTCTGTCCCAAATTATAAGA 59.029 40.000 0.00 0.00 0.00 2.10
2498 3065 6.126739 ACTCCCTCTGTCCCAAATTATAAGAC 60.127 42.308 0.00 0.00 0.00 3.01
2499 3066 5.057149 CCCTCTGTCCCAAATTATAAGACG 58.943 45.833 0.00 0.00 0.00 4.18
2500 3067 5.163343 CCCTCTGTCCCAAATTATAAGACGA 60.163 44.000 0.00 0.00 0.00 4.20
2501 3068 6.464465 CCCTCTGTCCCAAATTATAAGACGAT 60.464 42.308 0.00 0.00 0.00 3.73
2502 3069 6.992715 CCTCTGTCCCAAATTATAAGACGATT 59.007 38.462 0.00 0.00 0.00 3.34
2503 3070 7.499232 CCTCTGTCCCAAATTATAAGACGATTT 59.501 37.037 0.00 0.00 0.00 2.17
2504 3071 8.801882 TCTGTCCCAAATTATAAGACGATTTT 57.198 30.769 0.00 0.00 0.00 1.82
2505 3072 8.673711 TCTGTCCCAAATTATAAGACGATTTTG 58.326 33.333 0.00 0.00 0.00 2.44
2506 3073 8.568676 TGTCCCAAATTATAAGACGATTTTGA 57.431 30.769 8.03 0.00 0.00 2.69
2507 3074 8.673711 TGTCCCAAATTATAAGACGATTTTGAG 58.326 33.333 8.03 0.00 0.00 3.02
2508 3075 8.674607 GTCCCAAATTATAAGACGATTTTGAGT 58.325 33.333 8.03 0.00 0.00 3.41
2509 3076 9.238368 TCCCAAATTATAAGACGATTTTGAGTT 57.762 29.630 8.03 0.00 0.00 3.01
2510 3077 9.855021 CCCAAATTATAAGACGATTTTGAGTTT 57.145 29.630 8.03 0.00 0.00 2.66
2517 3084 6.677781 AAGACGATTTTGAGTTTTCAGACA 57.322 33.333 0.00 0.00 34.15 3.41
2518 3085 6.292389 AGACGATTTTGAGTTTTCAGACAG 57.708 37.500 0.00 0.00 34.15 3.51
2519 3086 4.848757 ACGATTTTGAGTTTTCAGACAGC 58.151 39.130 0.00 0.00 34.15 4.40
2520 3087 4.222114 CGATTTTGAGTTTTCAGACAGCC 58.778 43.478 0.00 0.00 34.15 4.85
2521 3088 4.550422 GATTTTGAGTTTTCAGACAGCCC 58.450 43.478 0.00 0.00 34.15 5.19
2522 3089 3.297134 TTTGAGTTTTCAGACAGCCCT 57.703 42.857 0.00 0.00 34.15 5.19
2523 3090 2.550830 TGAGTTTTCAGACAGCCCTC 57.449 50.000 0.00 0.00 0.00 4.30
2524 3091 1.768275 TGAGTTTTCAGACAGCCCTCA 59.232 47.619 0.00 0.00 0.00 3.86
2525 3092 2.172505 TGAGTTTTCAGACAGCCCTCAA 59.827 45.455 0.00 0.00 0.00 3.02
2526 3093 3.214328 GAGTTTTCAGACAGCCCTCAAA 58.786 45.455 0.00 0.00 0.00 2.69
2527 3094 3.631250 AGTTTTCAGACAGCCCTCAAAA 58.369 40.909 0.00 0.00 0.00 2.44
2528 3095 3.381590 AGTTTTCAGACAGCCCTCAAAAC 59.618 43.478 0.00 0.00 35.08 2.43
2529 3096 2.727123 TTCAGACAGCCCTCAAAACA 57.273 45.000 0.00 0.00 0.00 2.83
2530 3097 2.727123 TCAGACAGCCCTCAAAACAA 57.273 45.000 0.00 0.00 0.00 2.83
2531 3098 3.228188 TCAGACAGCCCTCAAAACAAT 57.772 42.857 0.00 0.00 0.00 2.71
2532 3099 2.886523 TCAGACAGCCCTCAAAACAATG 59.113 45.455 0.00 0.00 0.00 2.82
2533 3100 2.624838 CAGACAGCCCTCAAAACAATGT 59.375 45.455 0.00 0.00 0.00 2.71
2534 3101 2.624838 AGACAGCCCTCAAAACAATGTG 59.375 45.455 0.00 0.00 0.00 3.21
2535 3102 2.622942 GACAGCCCTCAAAACAATGTGA 59.377 45.455 0.00 0.00 0.00 3.58
2536 3103 3.030291 ACAGCCCTCAAAACAATGTGAA 58.970 40.909 0.00 0.00 0.00 3.18
2537 3104 3.642848 ACAGCCCTCAAAACAATGTGAAT 59.357 39.130 0.00 0.00 0.00 2.57
2538 3105 4.832266 ACAGCCCTCAAAACAATGTGAATA 59.168 37.500 0.00 0.00 0.00 1.75
2539 3106 5.047802 ACAGCCCTCAAAACAATGTGAATAG 60.048 40.000 0.00 0.00 0.00 1.73
2540 3107 5.183713 CAGCCCTCAAAACAATGTGAATAGA 59.816 40.000 0.00 0.00 0.00 1.98
2541 3108 5.183904 AGCCCTCAAAACAATGTGAATAGAC 59.816 40.000 0.00 0.00 0.00 2.59
2542 3109 5.048083 GCCCTCAAAACAATGTGAATAGACA 60.048 40.000 0.00 0.00 0.00 3.41
2543 3110 6.615088 CCCTCAAAACAATGTGAATAGACAG 58.385 40.000 0.00 0.00 0.00 3.51
2544 3111 6.207417 CCCTCAAAACAATGTGAATAGACAGT 59.793 38.462 0.00 0.00 0.00 3.55
2545 3112 7.301054 CCTCAAAACAATGTGAATAGACAGTC 58.699 38.462 0.00 0.00 0.00 3.51
2546 3113 7.202016 TCAAAACAATGTGAATAGACAGTCC 57.798 36.000 0.00 0.00 0.00 3.85
2547 3114 6.998074 TCAAAACAATGTGAATAGACAGTCCT 59.002 34.615 0.00 0.00 0.00 3.85
2548 3115 8.154203 TCAAAACAATGTGAATAGACAGTCCTA 58.846 33.333 0.00 0.00 0.00 2.94
2549 3116 8.783093 CAAAACAATGTGAATAGACAGTCCTAA 58.217 33.333 0.00 0.00 0.00 2.69
2550 3117 8.918202 AAACAATGTGAATAGACAGTCCTAAA 57.082 30.769 0.00 0.00 0.00 1.85
2551 3118 8.918202 AACAATGTGAATAGACAGTCCTAAAA 57.082 30.769 0.00 0.00 0.00 1.52
2552 3119 8.918202 ACAATGTGAATAGACAGTCCTAAAAA 57.082 30.769 0.00 0.00 0.00 1.94
2553 3120 8.784043 ACAATGTGAATAGACAGTCCTAAAAAC 58.216 33.333 0.00 0.00 0.00 2.43
2554 3121 7.596749 ATGTGAATAGACAGTCCTAAAAACG 57.403 36.000 0.00 0.00 0.00 3.60
2555 3122 6.518493 TGTGAATAGACAGTCCTAAAAACGT 58.482 36.000 0.00 0.00 0.00 3.99
2556 3123 6.987992 TGTGAATAGACAGTCCTAAAAACGTT 59.012 34.615 0.00 0.00 0.00 3.99
2557 3124 7.496591 TGTGAATAGACAGTCCTAAAAACGTTT 59.503 33.333 7.96 7.96 0.00 3.60
2558 3125 8.340443 GTGAATAGACAGTCCTAAAAACGTTTT 58.660 33.333 20.26 20.26 0.00 2.43
2559 3126 8.553696 TGAATAGACAGTCCTAAAAACGTTTTC 58.446 33.333 25.37 13.14 0.00 2.29
2560 3127 8.441312 AATAGACAGTCCTAAAAACGTTTTCA 57.559 30.769 25.37 11.68 0.00 2.69
2561 3128 6.359480 AGACAGTCCTAAAAACGTTTTCAG 57.641 37.500 25.37 20.44 0.00 3.02
2562 3129 6.110707 AGACAGTCCTAAAAACGTTTTCAGA 58.889 36.000 25.37 18.45 0.00 3.27
2563 3130 6.036844 AGACAGTCCTAAAAACGTTTTCAGAC 59.963 38.462 25.37 26.31 0.00 3.51
2564 3131 5.644636 ACAGTCCTAAAAACGTTTTCAGACA 59.355 36.000 31.07 16.82 31.38 3.41
2565 3132 6.183360 ACAGTCCTAAAAACGTTTTCAGACAG 60.183 38.462 31.07 27.98 31.38 3.51
2566 3133 4.968181 GTCCTAAAAACGTTTTCAGACAGC 59.032 41.667 28.03 13.96 0.00 4.40
2567 3134 4.035909 TCCTAAAAACGTTTTCAGACAGCC 59.964 41.667 25.37 0.00 0.00 4.85
2568 3135 3.859411 AAAAACGTTTTCAGACAGCCA 57.141 38.095 25.37 0.00 0.00 4.75
2569 3136 3.859411 AAAACGTTTTCAGACAGCCAA 57.141 38.095 20.26 0.00 0.00 4.52
2570 3137 3.859411 AAACGTTTTCAGACAGCCAAA 57.141 38.095 7.96 0.00 0.00 3.28
2571 3138 3.859411 AACGTTTTCAGACAGCCAAAA 57.141 38.095 0.00 0.00 0.00 2.44
2572 3139 3.859411 ACGTTTTCAGACAGCCAAAAA 57.141 38.095 0.00 0.00 0.00 1.94
2573 3140 3.507786 ACGTTTTCAGACAGCCAAAAAC 58.492 40.909 0.00 0.00 37.93 2.43
2575 3142 3.507786 GTTTTCAGACAGCCAAAAACGT 58.492 40.909 0.00 0.00 33.48 3.99
2576 3143 3.414549 TTTCAGACAGCCAAAAACGTC 57.585 42.857 0.00 0.00 0.00 4.34
2577 3144 2.325583 TCAGACAGCCAAAAACGTCT 57.674 45.000 0.00 0.00 39.26 4.18
2578 3145 2.639065 TCAGACAGCCAAAAACGTCTT 58.361 42.857 0.00 0.00 36.60 3.01
2579 3146 3.799366 TCAGACAGCCAAAAACGTCTTA 58.201 40.909 0.00 0.00 36.60 2.10
2580 3147 4.385825 TCAGACAGCCAAAAACGTCTTAT 58.614 39.130 0.00 0.00 36.60 1.73
2581 3148 4.819630 TCAGACAGCCAAAAACGTCTTATT 59.180 37.500 0.00 0.00 36.60 1.40
2582 3149 4.911610 CAGACAGCCAAAAACGTCTTATTG 59.088 41.667 0.00 0.00 36.60 1.90
2583 3150 4.819630 AGACAGCCAAAAACGTCTTATTGA 59.180 37.500 0.00 0.00 35.18 2.57
2584 3151 5.049405 AGACAGCCAAAAACGTCTTATTGAG 60.049 40.000 0.00 0.00 35.18 3.02
2585 3152 4.819630 ACAGCCAAAAACGTCTTATTGAGA 59.180 37.500 0.00 0.00 0.00 3.27
2631 3201 9.167311 GTATAATATGATAACCCCTTTGCTCTG 57.833 37.037 0.00 0.00 0.00 3.35
2740 3681 6.443792 TCTACTGCATACACGGTACAATATG 58.556 40.000 0.00 0.00 0.00 1.78
2749 3690 6.032956 ACACGGTACAATATGTTCTCTTCA 57.967 37.500 0.00 0.00 0.00 3.02
2777 3718 5.578336 TCAGTAATTTCTGAGATCAGCAACG 59.422 40.000 10.43 0.00 43.46 4.10
2874 3815 4.697352 ACCGTGAAGAAATTGATCCTCTTG 59.303 41.667 0.00 0.00 29.59 3.02
2891 3832 7.042797 TCCTCTTGTTTTTGAGATTTGGAAG 57.957 36.000 0.00 0.00 32.44 3.46
2895 3836 4.358851 TGTTTTTGAGATTTGGAAGCGTG 58.641 39.130 0.00 0.00 0.00 5.34
2918 3859 5.534654 TGTCACTAAGCAAAAGGTTAGCATT 59.465 36.000 12.73 0.00 30.57 3.56
2925 3866 4.459337 AGCAAAAGGTTAGCATTGTACCTC 59.541 41.667 0.00 0.00 41.33 3.85
2971 3912 6.597672 GTCATTTGTGGTGTACTCATCCAATA 59.402 38.462 0.00 0.00 32.82 1.90
3031 3972 5.621197 TTGTGTTCATGCCTGTTGTATAC 57.379 39.130 0.00 0.00 0.00 1.47
3067 4008 5.596836 TGTTCCTTTCTTGAACATTGCTT 57.403 34.783 1.94 0.00 45.19 3.91
3318 4260 1.338200 ACTTGCGTGGAAGACATCTCC 60.338 52.381 8.17 0.00 0.00 3.71
3527 4470 4.304939 AGCGAAAACTAGTTACTGACCAC 58.695 43.478 8.92 0.00 0.00 4.16
3582 4527 6.531948 AGAAAGTATTAGCAGCTAACAGTTCG 59.468 38.462 17.39 0.00 0.00 3.95
3664 4612 7.444299 AGTTGCTGTGAATTATCCAAACAATT 58.556 30.769 0.00 0.00 0.00 2.32
3666 4614 8.647226 GTTGCTGTGAATTATCCAAACAATTAC 58.353 33.333 0.00 0.00 0.00 1.89
3690 4638 0.887387 GCAGGTTTTGGACGCAGGTA 60.887 55.000 0.00 0.00 0.00 3.08
3721 4669 0.253044 TCTCTAGGCACACCATTGGC 59.747 55.000 1.54 0.00 42.35 4.52
3739 4687 2.169789 CGGAGCGCCTCTTGATGTG 61.170 63.158 2.29 0.00 0.00 3.21
3741 4689 1.364626 GGAGCGCCTCTTGATGTGTG 61.365 60.000 2.29 0.00 0.00 3.82
3743 4691 0.952497 AGCGCCTCTTGATGTGTGTG 60.952 55.000 2.29 0.00 0.00 3.82
3744 4692 1.230635 GCGCCTCTTGATGTGTGTGT 61.231 55.000 0.00 0.00 0.00 3.72
3745 4693 0.514255 CGCCTCTTGATGTGTGTGTG 59.486 55.000 0.00 0.00 0.00 3.82
3746 4694 1.597742 GCCTCTTGATGTGTGTGTGT 58.402 50.000 0.00 0.00 0.00 3.72
3747 4695 1.265095 GCCTCTTGATGTGTGTGTGTG 59.735 52.381 0.00 0.00 0.00 3.82
3748 4696 2.564771 CCTCTTGATGTGTGTGTGTGT 58.435 47.619 0.00 0.00 0.00 3.72
3749 4697 2.288729 CCTCTTGATGTGTGTGTGTGTG 59.711 50.000 0.00 0.00 0.00 3.82
3750 4698 2.938451 CTCTTGATGTGTGTGTGTGTGT 59.062 45.455 0.00 0.00 0.00 3.72
3751 4699 2.677337 TCTTGATGTGTGTGTGTGTGTG 59.323 45.455 0.00 0.00 0.00 3.82
3752 4700 2.106477 TGATGTGTGTGTGTGTGTGT 57.894 45.000 0.00 0.00 0.00 3.72
3753 4701 1.736681 TGATGTGTGTGTGTGTGTGTG 59.263 47.619 0.00 0.00 0.00 3.82
3754 4702 1.737236 GATGTGTGTGTGTGTGTGTGT 59.263 47.619 0.00 0.00 0.00 3.72
3755 4703 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3756 4704 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3757 4705 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3761 4709 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
3786 4734 6.472016 TGTGTGAATAGCCTCTTGATGTTTA 58.528 36.000 0.00 0.00 0.00 2.01
3788 4736 7.094805 TGTGTGAATAGCCTCTTGATGTTTAAC 60.095 37.037 0.00 0.00 0.00 2.01
3789 4737 6.092122 TGTGAATAGCCTCTTGATGTTTAACG 59.908 38.462 0.00 0.00 0.00 3.18
3790 4738 5.584649 TGAATAGCCTCTTGATGTTTAACGG 59.415 40.000 0.00 0.00 0.00 4.44
3791 4739 2.084546 AGCCTCTTGATGTTTAACGGC 58.915 47.619 0.75 0.75 36.58 5.68
3794 4742 3.687698 GCCTCTTGATGTTTAACGGCTTA 59.312 43.478 0.00 0.00 33.68 3.09
3899 4847 7.377766 TCCAGCTGACAAATGTATTAGTTTC 57.622 36.000 17.39 0.00 0.00 2.78
3900 4848 7.168219 TCCAGCTGACAAATGTATTAGTTTCT 58.832 34.615 17.39 0.00 0.00 2.52
3901 4849 7.119699 TCCAGCTGACAAATGTATTAGTTTCTG 59.880 37.037 17.39 0.00 0.00 3.02
3902 4850 6.744537 CAGCTGACAAATGTATTAGTTTCTGC 59.255 38.462 8.42 0.00 0.00 4.26
3903 4851 6.656693 AGCTGACAAATGTATTAGTTTCTGCT 59.343 34.615 0.00 0.00 0.00 4.24
3904 4852 6.963805 GCTGACAAATGTATTAGTTTCTGCTC 59.036 38.462 0.00 0.00 0.00 4.26
3905 4853 7.060600 TGACAAATGTATTAGTTTCTGCTCG 57.939 36.000 0.00 0.00 0.00 5.03
3906 4854 6.871492 TGACAAATGTATTAGTTTCTGCTCGA 59.129 34.615 0.00 0.00 0.00 4.04
3907 4855 7.386573 TGACAAATGTATTAGTTTCTGCTCGAA 59.613 33.333 0.00 0.00 0.00 3.71
3908 4856 8.268850 ACAAATGTATTAGTTTCTGCTCGAAT 57.731 30.769 0.00 0.00 0.00 3.34
3909 4857 8.177663 ACAAATGTATTAGTTTCTGCTCGAATG 58.822 33.333 0.00 0.00 0.00 2.67
3910 4858 7.849804 AATGTATTAGTTTCTGCTCGAATGT 57.150 32.000 0.00 0.00 0.00 2.71
3911 4859 8.942338 AATGTATTAGTTTCTGCTCGAATGTA 57.058 30.769 0.00 0.00 0.00 2.29
3912 4860 9.547753 AATGTATTAGTTTCTGCTCGAATGTAT 57.452 29.630 0.00 0.00 0.00 2.29
3913 4861 8.942338 TGTATTAGTTTCTGCTCGAATGTATT 57.058 30.769 0.00 0.00 0.00 1.89
3917 4865 8.997621 TTAGTTTCTGCTCGAATGTATTAGTT 57.002 30.769 0.00 0.00 0.00 2.24
3918 4866 7.907214 AGTTTCTGCTCGAATGTATTAGTTT 57.093 32.000 0.00 0.00 0.00 2.66
3919 4867 7.965045 AGTTTCTGCTCGAATGTATTAGTTTC 58.035 34.615 0.00 0.00 0.00 2.78
3993 4941 0.893727 AATCCCGACACCTGTTTGGC 60.894 55.000 0.00 0.00 40.22 4.52
3997 4945 2.935955 GACACCTGTTTGGCGACG 59.064 61.111 0.00 0.00 40.22 5.12
4010 4958 2.139811 GCGACGCAGCGAACAAATG 61.140 57.895 24.65 3.65 0.00 2.32
4660 5611 0.874390 TTCGTTGCTCACTTGGATGC 59.126 50.000 0.00 0.00 0.00 3.91
4664 5615 2.352030 CGTTGCTCACTTGGATGCAAAT 60.352 45.455 0.00 0.00 45.17 2.32
4710 5661 3.691118 GCTGATAGTGCATTGAGTTGGAA 59.309 43.478 0.00 0.00 0.00 3.53
4814 5765 3.869065 TGTATTTTTGCCTAGAGGTCCG 58.131 45.455 0.00 0.00 37.57 4.79
4937 5891 3.935203 CTCATCAGGTGCGAGTAAATTGT 59.065 43.478 0.00 0.00 0.00 2.71
5045 6000 2.729378 GCAAAAAGCACTGATCGCC 58.271 52.632 0.00 0.00 44.79 5.54
5046 6001 1.067199 GCAAAAAGCACTGATCGCCG 61.067 55.000 0.00 0.00 44.79 6.46
5047 6002 0.454957 CAAAAAGCACTGATCGCCGG 60.455 55.000 0.00 0.00 0.00 6.13
5048 6003 0.605319 AAAAAGCACTGATCGCCGGA 60.605 50.000 5.05 0.00 0.00 5.14
5049 6004 0.392998 AAAAGCACTGATCGCCGGAT 60.393 50.000 5.05 0.00 34.96 4.18
5050 6005 0.392998 AAAGCACTGATCGCCGGATT 60.393 50.000 5.05 0.00 31.51 3.01
5051 6006 0.464036 AAGCACTGATCGCCGGATTA 59.536 50.000 5.05 0.00 31.51 1.75
5052 6007 0.032678 AGCACTGATCGCCGGATTAG 59.967 55.000 5.05 0.00 40.94 1.73
5053 6008 0.249489 GCACTGATCGCCGGATTAGT 60.249 55.000 5.05 0.00 46.87 2.24
5054 6009 1.772182 CACTGATCGCCGGATTAGTC 58.228 55.000 5.05 0.00 43.72 2.59
5069 6024 4.277921 GGATTAGTCCGGATTAGTCTCGTT 59.722 45.833 22.93 0.22 34.13 3.85
5087 6042 3.368539 TCGTTTAAGCGCGTTTATGACAT 59.631 39.130 16.26 0.00 0.00 3.06
5092 6047 0.724549 GCGCGTTTATGACATGTGGA 59.275 50.000 1.15 0.00 0.00 4.02
5102 6057 7.307989 CGTTTATGACATGTGGATCCCTATTTC 60.308 40.741 9.90 6.89 0.00 2.17
5109 6064 5.036117 TGTGGATCCCTATTTCTGCTTAC 57.964 43.478 9.90 0.00 0.00 2.34
5120 6075 2.753055 TCTGCTTACGTGGCATAACA 57.247 45.000 16.15 1.91 39.07 2.41
5251 6206 1.277273 TGAGCAGAACAGACTCCCATG 59.723 52.381 0.00 0.00 0.00 3.66
5256 6211 1.203364 AGAACAGACTCCCATGGGTCT 60.203 52.381 30.28 22.95 42.67 3.85
5262 6217 2.036731 TCCCATGGGTCTCGTCGT 59.963 61.111 30.28 0.00 36.47 4.34
5312 6268 4.845580 AAGGCGCCCTCGATGCAG 62.846 66.667 26.15 2.39 38.10 4.41
5399 6355 2.671070 CTTGTCGGGATGGCCTGT 59.329 61.111 3.32 0.00 41.60 4.00
5581 6546 2.491022 GCGCGGAGATAGTGGGAGT 61.491 63.158 8.83 0.00 0.00 3.85
5583 6548 1.742768 GCGGAGATAGTGGGAGTGG 59.257 63.158 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
384 417 2.526873 ACGGGAAGCTCCACCACT 60.527 61.111 6.83 0.00 38.64 4.00
660 701 9.776158 GTTTCAATATTTTTGGGTTTCGTTTTT 57.224 25.926 0.00 0.00 0.00 1.94
661 702 9.168451 AGTTTCAATATTTTTGGGTTTCGTTTT 57.832 25.926 0.00 0.00 0.00 2.43
662 703 8.725405 AGTTTCAATATTTTTGGGTTTCGTTT 57.275 26.923 0.00 0.00 0.00 3.60
663 704 8.608317 CAAGTTTCAATATTTTTGGGTTTCGTT 58.392 29.630 0.00 0.00 0.00 3.85
664 705 7.254624 GCAAGTTTCAATATTTTTGGGTTTCGT 60.255 33.333 0.00 0.00 0.00 3.85
665 706 7.068955 GCAAGTTTCAATATTTTTGGGTTTCG 58.931 34.615 0.00 0.00 0.00 3.46
666 707 7.012799 TGGCAAGTTTCAATATTTTTGGGTTTC 59.987 33.333 0.00 0.00 0.00 2.78
667 708 6.830838 TGGCAAGTTTCAATATTTTTGGGTTT 59.169 30.769 0.00 0.00 0.00 3.27
668 709 6.360618 TGGCAAGTTTCAATATTTTTGGGTT 58.639 32.000 0.00 0.00 0.00 4.11
669 710 5.934781 TGGCAAGTTTCAATATTTTTGGGT 58.065 33.333 0.00 0.00 0.00 4.51
670 711 6.623331 GCATGGCAAGTTTCAATATTTTTGGG 60.623 38.462 0.00 0.00 0.00 4.12
671 712 6.149807 AGCATGGCAAGTTTCAATATTTTTGG 59.850 34.615 0.00 0.00 0.00 3.28
672 713 7.136289 AGCATGGCAAGTTTCAATATTTTTG 57.864 32.000 0.00 0.00 0.00 2.44
678 719 6.338214 TGTAAAGCATGGCAAGTTTCAATA 57.662 33.333 0.00 0.00 0.00 1.90
708 749 8.328864 CAATTTTAGTTATCTAGAGACGGCAAC 58.671 37.037 0.00 0.00 0.00 4.17
711 752 6.702282 AGCAATTTTAGTTATCTAGAGACGGC 59.298 38.462 0.00 0.00 0.00 5.68
712 753 9.915629 ATAGCAATTTTAGTTATCTAGAGACGG 57.084 33.333 0.00 0.00 0.00 4.79
745 787 1.517242 GAAGCAATCCCATCCTAGCG 58.483 55.000 0.00 0.00 0.00 4.26
747 789 2.158900 ACACGAAGCAATCCCATCCTAG 60.159 50.000 0.00 0.00 0.00 3.02
752 794 1.271325 TGTGACACGAAGCAATCCCAT 60.271 47.619 0.22 0.00 0.00 4.00
753 795 0.107643 TGTGACACGAAGCAATCCCA 59.892 50.000 0.22 0.00 0.00 4.37
773 815 4.620723 AGGACCCTGATAAGTATCACACA 58.379 43.478 0.00 0.00 37.76 3.72
780 822 9.455144 TCCAAATAATTAGGACCCTGATAAGTA 57.545 33.333 0.00 0.00 0.00 2.24
790 832 4.584743 CCTTGCCTCCAAATAATTAGGACC 59.415 45.833 0.00 0.00 0.00 4.46
793 835 3.960102 TGCCTTGCCTCCAAATAATTAGG 59.040 43.478 0.00 0.00 0.00 2.69
794 836 4.038402 CCTGCCTTGCCTCCAAATAATTAG 59.962 45.833 0.00 0.00 0.00 1.73
806 848 1.302832 CTTTCGACCTGCCTTGCCT 60.303 57.895 0.00 0.00 0.00 4.75
808 850 2.335712 CCCTTTCGACCTGCCTTGC 61.336 63.158 0.00 0.00 0.00 4.01
809 851 0.674895 CTCCCTTTCGACCTGCCTTG 60.675 60.000 0.00 0.00 0.00 3.61
813 855 1.135333 CTAGTCTCCCTTTCGACCTGC 59.865 57.143 0.00 0.00 0.00 4.85
819 861 1.063867 TCCCTCCTAGTCTCCCTTTCG 60.064 57.143 0.00 0.00 0.00 3.46
829 871 1.383963 TCCAGACAGTCCCTCCTAGT 58.616 55.000 0.00 0.00 0.00 2.57
830 872 2.534042 TTCCAGACAGTCCCTCCTAG 57.466 55.000 0.00 0.00 0.00 3.02
831 873 3.687551 CGTATTCCAGACAGTCCCTCCTA 60.688 52.174 0.00 0.00 0.00 2.94
832 874 2.753247 GTATTCCAGACAGTCCCTCCT 58.247 52.381 0.00 0.00 0.00 3.69
833 875 1.409427 CGTATTCCAGACAGTCCCTCC 59.591 57.143 0.00 0.00 0.00 4.30
835 877 2.100989 GACGTATTCCAGACAGTCCCT 58.899 52.381 0.00 0.00 0.00 4.20
836 878 2.099427 GAGACGTATTCCAGACAGTCCC 59.901 54.545 0.00 0.00 0.00 4.46
837 879 2.753452 TGAGACGTATTCCAGACAGTCC 59.247 50.000 0.00 0.00 0.00 3.85
838 880 4.436242 TTGAGACGTATTCCAGACAGTC 57.564 45.455 0.00 0.00 0.00 3.51
839 881 4.866508 TTTGAGACGTATTCCAGACAGT 57.133 40.909 0.00 0.00 0.00 3.55
840 882 5.926542 TCTTTTTGAGACGTATTCCAGACAG 59.073 40.000 0.00 0.00 0.00 3.51
841 883 5.849510 TCTTTTTGAGACGTATTCCAGACA 58.150 37.500 0.00 0.00 0.00 3.41
842 884 6.645415 TCTTCTTTTTGAGACGTATTCCAGAC 59.355 38.462 0.00 0.00 33.02 3.51
843 885 6.755206 TCTTCTTTTTGAGACGTATTCCAGA 58.245 36.000 0.00 0.00 33.02 3.86
844 886 7.421530 TTCTTCTTTTTGAGACGTATTCCAG 57.578 36.000 0.00 0.00 33.02 3.86
845 887 7.795482 TTTCTTCTTTTTGAGACGTATTCCA 57.205 32.000 0.00 0.00 33.02 3.53
948 994 6.599986 ACCCAAACCCTAATATGTAATCCA 57.400 37.500 0.00 0.00 0.00 3.41
949 995 6.206048 CGAACCCAAACCCTAATATGTAATCC 59.794 42.308 0.00 0.00 0.00 3.01
995 1045 3.002583 TCCCGTGCAGCATCTCCA 61.003 61.111 0.00 0.00 0.00 3.86
1029 1079 1.066587 GGAGCCGAACTCTGGATCG 59.933 63.158 5.56 0.00 42.82 3.69
1071 1121 2.315386 GGACGGTGTGAAAGACGGC 61.315 63.158 0.00 0.00 33.58 5.68
1078 1128 2.338620 CGCAGAGGACGGTGTGAA 59.661 61.111 0.00 0.00 0.00 3.18
1179 1229 2.288666 GACAAAACACTGAGGTGCTCA 58.711 47.619 0.00 0.00 46.57 4.26
1180 1230 1.604278 GGACAAAACACTGAGGTGCTC 59.396 52.381 0.00 0.00 46.57 4.26
1189 1239 1.109323 GGCCTGCTGGACAAAACACT 61.109 55.000 14.77 0.00 42.34 3.55
1190 1240 1.109323 AGGCCTGCTGGACAAAACAC 61.109 55.000 18.96 0.00 46.30 3.32
1215 1265 2.580276 GGCCCGACGATGGTTGTA 59.420 61.111 0.00 0.00 0.00 2.41
1333 1383 4.394920 GCAGAAAACAGACGGGATATCAAA 59.605 41.667 4.83 0.00 0.00 2.69
1357 1430 6.205464 GCAGGAGCATTGCAGATAAATTACTA 59.795 38.462 11.91 0.00 41.17 1.82
1358 1431 5.009410 GCAGGAGCATTGCAGATAAATTACT 59.991 40.000 11.91 0.00 41.17 2.24
1359 1432 5.218139 GCAGGAGCATTGCAGATAAATTAC 58.782 41.667 11.91 0.00 41.17 1.89
1459 1533 1.408340 AGAGTCATGTCATCCAGCTCG 59.592 52.381 0.00 0.00 0.00 5.03
1494 1568 0.972983 CTCCTCAAGAGCTTCCGGGA 60.973 60.000 0.00 0.00 35.31 5.14
1507 1581 6.892456 AGTCACTGAAGTAATACATCTCCTCA 59.108 38.462 0.00 0.00 0.00 3.86
1515 1589 5.706833 TGGTCGTAGTCACTGAAGTAATACA 59.293 40.000 0.00 0.00 0.00 2.29
1597 2162 1.445582 GACAAGGCGGTGGTAGTCG 60.446 63.158 0.00 0.00 0.00 4.18
1797 2362 1.063469 CTTCAAAACTGAACGCCGTGT 59.937 47.619 0.00 0.00 0.00 4.49
1849 2414 7.010738 GGCACTTTTACATGATCAATCCAAATG 59.989 37.037 0.00 3.66 0.00 2.32
2063 2628 4.721132 TCACTAGGTGTTAAAACAAGGGG 58.279 43.478 0.00 0.00 41.21 4.79
2079 2644 7.832503 TGTGTACAATGTTCATCATCACTAG 57.167 36.000 0.00 0.00 35.48 2.57
2294 2861 6.424176 CATCTGATGATGCATACCTTGATC 57.576 41.667 12.27 0.00 42.83 2.92
2358 2925 4.416848 AGATCAAGGTTATTGGTAGCCCAT 59.583 41.667 0.00 0.00 41.49 4.00
2363 2930 6.889722 TCCCAAAAGATCAAGGTTATTGGTAG 59.110 38.462 0.00 0.00 35.25 3.18
2377 2944 6.621613 GTTTAATCCACTGTCCCAAAAGATC 58.378 40.000 0.00 0.00 0.00 2.75
2386 2953 5.163794 CCATGTAACGTTTAATCCACTGTCC 60.164 44.000 5.91 0.00 0.00 4.02
2475 3042 5.163343 CGTCTTATAATTTGGGACAGAGGGA 60.163 44.000 3.57 0.00 42.39 4.20
2476 3043 5.057149 CGTCTTATAATTTGGGACAGAGGG 58.943 45.833 3.57 0.00 42.39 4.30
2477 3044 5.914033 TCGTCTTATAATTTGGGACAGAGG 58.086 41.667 3.57 0.00 42.39 3.69
2478 3045 8.438676 AAATCGTCTTATAATTTGGGACAGAG 57.561 34.615 3.57 0.00 42.39 3.35
2479 3046 8.673711 CAAAATCGTCTTATAATTTGGGACAGA 58.326 33.333 3.57 2.58 42.39 3.41
2480 3047 8.673711 TCAAAATCGTCTTATAATTTGGGACAG 58.326 33.333 6.98 0.16 42.39 3.51
2481 3048 8.568676 TCAAAATCGTCTTATAATTTGGGACA 57.431 30.769 6.98 0.00 0.00 4.02
2482 3049 8.674607 ACTCAAAATCGTCTTATAATTTGGGAC 58.325 33.333 11.86 3.62 33.58 4.46
2483 3050 8.801882 ACTCAAAATCGTCTTATAATTTGGGA 57.198 30.769 11.86 0.88 33.58 4.37
2484 3051 9.855021 AAACTCAAAATCGTCTTATAATTTGGG 57.145 29.630 5.64 5.64 35.07 4.12
2491 3058 9.483916 TGTCTGAAAACTCAAAATCGTCTTATA 57.516 29.630 0.00 0.00 0.00 0.98
2492 3059 8.378172 TGTCTGAAAACTCAAAATCGTCTTAT 57.622 30.769 0.00 0.00 0.00 1.73
2493 3060 7.518370 GCTGTCTGAAAACTCAAAATCGTCTTA 60.518 37.037 0.00 0.00 0.00 2.10
2494 3061 6.677781 TGTCTGAAAACTCAAAATCGTCTT 57.322 33.333 0.00 0.00 0.00 3.01
2495 3062 5.277538 GCTGTCTGAAAACTCAAAATCGTCT 60.278 40.000 0.00 0.00 0.00 4.18
2496 3063 4.906437 GCTGTCTGAAAACTCAAAATCGTC 59.094 41.667 0.00 0.00 0.00 4.20
2497 3064 4.261197 GGCTGTCTGAAAACTCAAAATCGT 60.261 41.667 0.00 0.00 0.00 3.73
2498 3065 4.222114 GGCTGTCTGAAAACTCAAAATCG 58.778 43.478 0.00 0.00 0.00 3.34
2499 3066 4.279420 AGGGCTGTCTGAAAACTCAAAATC 59.721 41.667 0.00 0.00 0.00 2.17
2500 3067 4.218312 AGGGCTGTCTGAAAACTCAAAAT 58.782 39.130 0.00 0.00 0.00 1.82
2501 3068 3.631250 AGGGCTGTCTGAAAACTCAAAA 58.369 40.909 0.00 0.00 0.00 2.44
2502 3069 3.214328 GAGGGCTGTCTGAAAACTCAAA 58.786 45.455 0.00 0.00 0.00 2.69
2503 3070 2.172505 TGAGGGCTGTCTGAAAACTCAA 59.827 45.455 0.00 0.00 31.30 3.02
2504 3071 1.768275 TGAGGGCTGTCTGAAAACTCA 59.232 47.619 0.00 0.00 0.00 3.41
2505 3072 2.550830 TGAGGGCTGTCTGAAAACTC 57.449 50.000 0.00 0.00 0.00 3.01
2506 3073 3.297134 TTTGAGGGCTGTCTGAAAACT 57.703 42.857 0.00 0.00 0.00 2.66
2507 3074 3.130340 TGTTTTGAGGGCTGTCTGAAAAC 59.870 43.478 16.21 16.21 44.90 2.43
2508 3075 3.360867 TGTTTTGAGGGCTGTCTGAAAA 58.639 40.909 0.00 0.00 29.84 2.29
2509 3076 3.011566 TGTTTTGAGGGCTGTCTGAAA 57.988 42.857 0.00 0.00 0.00 2.69
2510 3077 2.727123 TGTTTTGAGGGCTGTCTGAA 57.273 45.000 0.00 0.00 0.00 3.02
2511 3078 2.727123 TTGTTTTGAGGGCTGTCTGA 57.273 45.000 0.00 0.00 0.00 3.27
2512 3079 2.624838 ACATTGTTTTGAGGGCTGTCTG 59.375 45.455 0.00 0.00 0.00 3.51
2513 3080 2.624838 CACATTGTTTTGAGGGCTGTCT 59.375 45.455 0.00 0.00 0.00 3.41
2514 3081 2.622942 TCACATTGTTTTGAGGGCTGTC 59.377 45.455 0.00 0.00 0.00 3.51
2515 3082 2.665165 TCACATTGTTTTGAGGGCTGT 58.335 42.857 0.00 0.00 0.00 4.40
2516 3083 3.731652 TTCACATTGTTTTGAGGGCTG 57.268 42.857 0.00 0.00 0.00 4.85
2517 3084 5.183904 GTCTATTCACATTGTTTTGAGGGCT 59.816 40.000 0.00 0.00 0.00 5.19
2518 3085 5.048083 TGTCTATTCACATTGTTTTGAGGGC 60.048 40.000 0.00 0.00 0.00 5.19
2519 3086 6.207417 ACTGTCTATTCACATTGTTTTGAGGG 59.793 38.462 0.00 0.00 0.00 4.30
2520 3087 7.206981 ACTGTCTATTCACATTGTTTTGAGG 57.793 36.000 0.00 0.00 0.00 3.86
2521 3088 7.173907 AGGACTGTCTATTCACATTGTTTTGAG 59.826 37.037 7.85 0.00 0.00 3.02
2522 3089 6.998074 AGGACTGTCTATTCACATTGTTTTGA 59.002 34.615 7.85 0.00 0.00 2.69
2523 3090 7.206981 AGGACTGTCTATTCACATTGTTTTG 57.793 36.000 7.85 0.00 0.00 2.44
2524 3091 8.918202 TTAGGACTGTCTATTCACATTGTTTT 57.082 30.769 7.85 0.00 0.00 2.43
2525 3092 8.918202 TTTAGGACTGTCTATTCACATTGTTT 57.082 30.769 7.85 0.00 0.00 2.83
2526 3093 8.918202 TTTTAGGACTGTCTATTCACATTGTT 57.082 30.769 7.85 0.00 0.00 2.83
2527 3094 8.784043 GTTTTTAGGACTGTCTATTCACATTGT 58.216 33.333 7.85 0.00 0.00 2.71
2528 3095 7.957484 CGTTTTTAGGACTGTCTATTCACATTG 59.043 37.037 7.85 0.00 0.00 2.82
2529 3096 7.660208 ACGTTTTTAGGACTGTCTATTCACATT 59.340 33.333 7.85 0.00 0.00 2.71
2530 3097 7.159372 ACGTTTTTAGGACTGTCTATTCACAT 58.841 34.615 7.85 0.00 0.00 3.21
2531 3098 6.518493 ACGTTTTTAGGACTGTCTATTCACA 58.482 36.000 7.85 0.00 0.00 3.58
2532 3099 7.417496 AACGTTTTTAGGACTGTCTATTCAC 57.583 36.000 7.85 0.00 0.00 3.18
2533 3100 8.441312 AAAACGTTTTTAGGACTGTCTATTCA 57.559 30.769 20.26 0.00 0.00 2.57
2534 3101 8.553696 TGAAAACGTTTTTAGGACTGTCTATTC 58.446 33.333 25.86 9.11 0.00 1.75
2535 3102 8.441312 TGAAAACGTTTTTAGGACTGTCTATT 57.559 30.769 25.86 0.00 0.00 1.73
2536 3103 7.929785 TCTGAAAACGTTTTTAGGACTGTCTAT 59.070 33.333 32.54 8.43 35.29 1.98
2537 3104 7.223387 GTCTGAAAACGTTTTTAGGACTGTCTA 59.777 37.037 32.54 16.42 35.29 2.59
2538 3105 6.036844 GTCTGAAAACGTTTTTAGGACTGTCT 59.963 38.462 32.54 9.01 35.29 3.41
2539 3106 6.183360 TGTCTGAAAACGTTTTTAGGACTGTC 60.183 38.462 32.54 17.40 35.29 3.51
2540 3107 5.644636 TGTCTGAAAACGTTTTTAGGACTGT 59.355 36.000 32.54 10.14 35.29 3.55
2541 3108 6.114221 TGTCTGAAAACGTTTTTAGGACTG 57.886 37.500 32.54 20.84 35.29 3.51
2542 3109 5.220796 GCTGTCTGAAAACGTTTTTAGGACT 60.221 40.000 32.54 11.47 35.29 3.85
2543 3110 4.968181 GCTGTCTGAAAACGTTTTTAGGAC 59.032 41.667 32.54 29.87 35.29 3.85
2544 3111 4.035909 GGCTGTCTGAAAACGTTTTTAGGA 59.964 41.667 32.54 23.71 35.29 2.94
2545 3112 4.201970 TGGCTGTCTGAAAACGTTTTTAGG 60.202 41.667 32.54 22.55 35.29 2.69
2546 3113 4.915704 TGGCTGTCTGAAAACGTTTTTAG 58.084 39.130 29.68 29.68 35.72 1.85
2547 3114 4.966965 TGGCTGTCTGAAAACGTTTTTA 57.033 36.364 25.86 20.86 0.00 1.52
2548 3115 3.859411 TGGCTGTCTGAAAACGTTTTT 57.141 38.095 25.86 11.05 0.00 1.94
2549 3116 3.859411 TTGGCTGTCTGAAAACGTTTT 57.141 38.095 25.46 25.46 0.00 2.43
2550 3117 3.859411 TTTGGCTGTCTGAAAACGTTT 57.141 38.095 7.96 7.96 0.00 3.60
2551 3118 3.859411 TTTTGGCTGTCTGAAAACGTT 57.141 38.095 0.00 0.00 0.00 3.99
2552 3119 3.507786 GTTTTTGGCTGTCTGAAAACGT 58.492 40.909 8.13 0.00 33.83 3.99
2554 3121 3.507786 ACGTTTTTGGCTGTCTGAAAAC 58.492 40.909 11.72 11.72 38.16 2.43
2555 3122 3.442273 AGACGTTTTTGGCTGTCTGAAAA 59.558 39.130 0.00 0.00 40.03 2.29
2556 3123 3.013921 AGACGTTTTTGGCTGTCTGAAA 58.986 40.909 0.00 0.00 40.03 2.69
2557 3124 2.639065 AGACGTTTTTGGCTGTCTGAA 58.361 42.857 0.00 0.00 40.03 3.02
2558 3125 2.325583 AGACGTTTTTGGCTGTCTGA 57.674 45.000 0.00 0.00 40.03 3.27
2559 3126 4.749245 ATAAGACGTTTTTGGCTGTCTG 57.251 40.909 0.00 0.00 40.62 3.51
2560 3127 4.819630 TCAATAAGACGTTTTTGGCTGTCT 59.180 37.500 0.00 0.00 43.18 3.41
2561 3128 5.049680 TCTCAATAAGACGTTTTTGGCTGTC 60.050 40.000 0.00 0.00 0.00 3.51
2562 3129 4.819630 TCTCAATAAGACGTTTTTGGCTGT 59.180 37.500 0.00 0.00 0.00 4.40
2563 3130 5.147162 GTCTCAATAAGACGTTTTTGGCTG 58.853 41.667 0.00 0.00 44.79 4.85
2564 3131 5.358298 GTCTCAATAAGACGTTTTTGGCT 57.642 39.130 0.00 0.00 44.79 4.75
2579 3146 9.829507 CTTCATTTATACTTCCTCTGTCTCAAT 57.170 33.333 0.00 0.00 0.00 2.57
2580 3147 8.816894 ACTTCATTTATACTTCCTCTGTCTCAA 58.183 33.333 0.00 0.00 0.00 3.02
2581 3148 8.367660 ACTTCATTTATACTTCCTCTGTCTCA 57.632 34.615 0.00 0.00 0.00 3.27
2631 3201 6.242396 TCTAGCTTCCATCTCTATCCACTAC 58.758 44.000 0.00 0.00 0.00 2.73
2717 3658 6.213677 ACATATTGTACCGTGTATGCAGTAG 58.786 40.000 0.00 0.00 0.00 2.57
2718 3659 6.151663 ACATATTGTACCGTGTATGCAGTA 57.848 37.500 0.00 0.00 0.00 2.74
2762 3703 1.895798 AGAACCGTTGCTGATCTCAGA 59.104 47.619 11.34 0.00 46.59 3.27
2777 3718 8.641499 TGTTGATGTCAAATAAAACAAGAACC 57.359 30.769 0.00 0.00 37.63 3.62
2874 3815 4.359706 ACACGCTTCCAAATCTCAAAAAC 58.640 39.130 0.00 0.00 0.00 2.43
2891 3832 1.602377 ACCTTTTGCTTAGTGACACGC 59.398 47.619 0.00 0.00 0.00 5.34
2895 3836 5.629079 ATGCTAACCTTTTGCTTAGTGAC 57.371 39.130 0.00 0.00 0.00 3.67
2943 3884 4.415881 TGAGTACACCACAAATGACAGT 57.584 40.909 0.00 0.00 0.00 3.55
2971 3912 7.173562 GGTTTTGTTTGTAAAGACCAAGGTTTT 59.826 33.333 0.00 0.00 0.00 2.43
3031 3972 2.632377 AGGAACATACATCACCAAGCG 58.368 47.619 0.00 0.00 0.00 4.68
3527 4470 6.418956 GTTGTGACTTGTGTGTGTTATACAG 58.581 40.000 0.00 0.00 40.69 2.74
3582 4527 5.633182 TGTTTTGACTCTGTTTTGCAGTTTC 59.367 36.000 0.00 0.00 45.23 2.78
3664 4612 0.111639 GTCCAAAACCTGCCCTGGTA 59.888 55.000 0.00 0.00 39.83 3.25
3666 4614 2.268076 CGTCCAAAACCTGCCCTGG 61.268 63.158 0.00 0.00 0.00 4.45
3690 4638 1.977129 GCCTAGAGAAGCAGATGGGAT 59.023 52.381 0.00 0.00 0.00 3.85
3721 4669 2.169789 CACATCAAGAGGCGCTCCG 61.170 63.158 7.64 0.00 37.47 4.63
3739 4687 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3741 4689 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3743 4691 2.287308 ACAAACACACACACACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
3744 4692 1.950216 ACAAACACACACACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
3745 4693 2.287308 ACACAAACACACACACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
3746 4694 1.950216 ACACAAACACACACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
3747 4695 2.031595 TCACACAAACACACACACACAC 60.032 45.455 0.00 0.00 0.00 3.82
3748 4696 2.222027 TCACACAAACACACACACACA 58.778 42.857 0.00 0.00 0.00 3.72
3749 4697 2.979401 TCACACAAACACACACACAC 57.021 45.000 0.00 0.00 0.00 3.82
3750 4698 4.438065 GCTATTCACACAAACACACACACA 60.438 41.667 0.00 0.00 0.00 3.72
3751 4699 4.035017 GCTATTCACACAAACACACACAC 58.965 43.478 0.00 0.00 0.00 3.82
3752 4700 3.066064 GGCTATTCACACAAACACACACA 59.934 43.478 0.00 0.00 0.00 3.72
3753 4701 3.315191 AGGCTATTCACACAAACACACAC 59.685 43.478 0.00 0.00 0.00 3.82
3754 4702 3.550820 AGGCTATTCACACAAACACACA 58.449 40.909 0.00 0.00 0.00 3.72
3755 4703 3.815401 AGAGGCTATTCACACAAACACAC 59.185 43.478 0.00 0.00 0.00 3.82
3756 4704 4.085357 AGAGGCTATTCACACAAACACA 57.915 40.909 0.00 0.00 0.00 3.72
3757 4705 4.515191 TCAAGAGGCTATTCACACAAACAC 59.485 41.667 0.00 0.00 0.00 3.32
3761 4709 4.910195 ACATCAAGAGGCTATTCACACAA 58.090 39.130 0.00 0.00 0.00 3.33
3786 4734 5.104485 AGTTTCCAAGAGGATATAAGCCGTT 60.104 40.000 0.00 0.00 45.26 4.44
3788 4736 4.962155 AGTTTCCAAGAGGATATAAGCCG 58.038 43.478 0.00 0.00 45.26 5.52
3789 4737 7.510407 ACTAAGTTTCCAAGAGGATATAAGCC 58.490 38.462 0.00 0.00 45.26 4.35
3790 4738 8.204836 TGACTAAGTTTCCAAGAGGATATAAGC 58.795 37.037 0.00 0.00 45.26 3.09
3794 4742 7.500559 GCAATGACTAAGTTTCCAAGAGGATAT 59.499 37.037 0.00 0.00 45.26 1.63
3876 4824 7.246311 CAGAAACTAATACATTTGTCAGCTGG 58.754 38.462 15.13 0.00 0.00 4.85
3899 4847 5.521735 AGCAGAAACTAATACATTCGAGCAG 59.478 40.000 0.00 0.00 34.02 4.24
3900 4848 5.419542 AGCAGAAACTAATACATTCGAGCA 58.580 37.500 0.00 0.00 34.02 4.26
3901 4849 5.331905 CGAGCAGAAACTAATACATTCGAGC 60.332 44.000 0.00 0.00 32.74 5.03
3902 4850 5.971792 TCGAGCAGAAACTAATACATTCGAG 59.028 40.000 0.00 0.00 0.00 4.04
3903 4851 5.886992 TCGAGCAGAAACTAATACATTCGA 58.113 37.500 0.00 0.00 0.00 3.71
3904 4852 6.569228 TTCGAGCAGAAACTAATACATTCG 57.431 37.500 0.00 0.00 35.61 3.34
3905 4853 6.414890 GCTTCGAGCAGAAACTAATACATTC 58.585 40.000 2.53 0.00 41.89 2.67
3906 4854 6.351327 GCTTCGAGCAGAAACTAATACATT 57.649 37.500 2.53 0.00 41.89 2.71
3907 4855 5.975410 GCTTCGAGCAGAAACTAATACAT 57.025 39.130 2.53 0.00 41.89 2.29
3993 4941 0.384230 AACATTTGTTCGCTGCGTCG 60.384 50.000 22.48 6.27 31.64 5.12
3997 4945 7.241376 AGTAAATAGTAACATTTGTTCGCTGC 58.759 34.615 0.00 0.00 39.31 5.25
4010 4958 6.539826 ACCACCGCCAAATAGTAAATAGTAAC 59.460 38.462 0.00 0.00 0.00 2.50
4126 5074 3.350219 AAACTCACCCGAATACAGCAT 57.650 42.857 0.00 0.00 0.00 3.79
4451 5401 5.648092 ACCCAATGTGTTTAGCAATCTCTAC 59.352 40.000 0.00 0.00 0.00 2.59
4639 5590 1.136252 CATCCAAGTGAGCAACGAACG 60.136 52.381 0.00 0.00 0.00 3.95
4664 5615 9.239551 AGCATATACTACACGGATACATCTTAA 57.760 33.333 0.00 0.00 0.00 1.85
4814 5765 5.694458 AGTTTCGTGGTATTTGGAAATTTGC 59.306 36.000 2.22 2.22 31.80 3.68
4915 5869 3.935203 ACAATTTACTCGCACCTGATGAG 59.065 43.478 0.00 0.00 35.85 2.90
4937 5891 1.403679 CTTCAAAGTGGTGGTTTCGCA 59.596 47.619 0.00 0.00 0.00 5.10
5046 6001 3.819902 ACGAGACTAATCCGGACTAATCC 59.180 47.826 6.12 0.00 42.28 3.01
5047 6002 5.435820 AACGAGACTAATCCGGACTAATC 57.564 43.478 6.12 0.00 0.00 1.75
5048 6003 5.848833 AAACGAGACTAATCCGGACTAAT 57.151 39.130 6.12 0.00 0.00 1.73
5049 6004 6.678900 GCTTAAACGAGACTAATCCGGACTAA 60.679 42.308 6.12 0.00 0.00 2.24
5050 6005 5.220931 GCTTAAACGAGACTAATCCGGACTA 60.221 44.000 6.12 0.00 0.00 2.59
5051 6006 4.439837 GCTTAAACGAGACTAATCCGGACT 60.440 45.833 6.12 0.00 0.00 3.85
5052 6007 3.795639 GCTTAAACGAGACTAATCCGGAC 59.204 47.826 6.12 0.00 0.00 4.79
5053 6008 3.488047 CGCTTAAACGAGACTAATCCGGA 60.488 47.826 6.61 6.61 34.06 5.14
5054 6009 2.787680 CGCTTAAACGAGACTAATCCGG 59.212 50.000 0.00 0.00 34.06 5.14
5069 6024 3.181515 CCACATGTCATAAACGCGCTTAA 60.182 43.478 5.73 0.00 0.00 1.85
5087 6042 4.442893 CGTAAGCAGAAATAGGGATCCACA 60.443 45.833 15.23 0.00 0.00 4.17
5092 6047 3.744530 GCCACGTAAGCAGAAATAGGGAT 60.745 47.826 4.95 0.00 45.62 3.85
5102 6057 4.142708 TGAAATGTTATGCCACGTAAGCAG 60.143 41.667 16.43 0.00 44.90 4.24
5231 6186 1.277273 CATGGGAGTCTGTTCTGCTCA 59.723 52.381 0.00 0.00 0.00 4.26
5271 6226 3.475494 ATACCCCGATGCACGCCA 61.475 61.111 0.00 0.00 41.07 5.69
5276 6231 2.146724 CCTCCCATACCCCGATGCA 61.147 63.158 0.00 0.00 0.00 3.96
5346 6302 0.957888 GAGGAGCTTGAGGTGGTTGC 60.958 60.000 0.00 0.00 0.00 4.17
5381 6337 2.825836 CAGGCCATCCCGACAAGC 60.826 66.667 5.01 0.00 39.21 4.01
5384 6340 3.716195 CCACAGGCCATCCCGACA 61.716 66.667 5.01 0.00 39.21 4.35
5426 6391 2.726351 CCACTCCTTCCGCTCCCTC 61.726 68.421 0.00 0.00 0.00 4.30
5427 6392 2.685380 CCACTCCTTCCGCTCCCT 60.685 66.667 0.00 0.00 0.00 4.20
5428 6393 3.787001 CCCACTCCTTCCGCTCCC 61.787 72.222 0.00 0.00 0.00 4.30
5429 6394 3.787001 CCCCACTCCTTCCGCTCC 61.787 72.222 0.00 0.00 0.00 4.70
5430 6395 3.787001 CCCCCACTCCTTCCGCTC 61.787 72.222 0.00 0.00 0.00 5.03
5452 6417 3.007920 CTGCTCCCTCCACAGGCT 61.008 66.667 0.00 0.00 38.72 4.58
5480 6445 3.160047 CCGGATCTGCAGGCCTCT 61.160 66.667 15.13 0.00 0.00 3.69
5562 6527 2.123854 TCCCACTATCTCCGCGCT 60.124 61.111 5.56 0.00 0.00 5.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.