Multiple sequence alignment - TraesCS1D01G192400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G192400 chr1D 100.000 5493 0 0 1 5493 268704015 268709507 0.000000e+00 10144.0
1 TraesCS1D01G192400 chr1D 88.024 334 36 3 250 579 484442140 484441807 5.160000e-105 392.0
2 TraesCS1D01G192400 chr1D 97.297 37 1 0 2476 2512 305589041 305589077 4.590000e-06 63.9
3 TraesCS1D01G192400 chr1B 94.868 1851 65 12 680 2512 370731787 370729949 0.000000e+00 2865.0
4 TraesCS1D01G192400 chr1B 92.252 1381 77 16 3490 4863 370728785 370727428 0.000000e+00 1930.0
5 TraesCS1D01G192400 chr1B 94.426 915 34 5 2526 3431 370729711 370728805 0.000000e+00 1391.0
6 TraesCS1D01G192400 chr1B 87.324 426 17 13 4885 5298 370727152 370726752 2.330000e-123 453.0
7 TraesCS1D01G192400 chr1B 90.038 261 25 1 1 260 623461116 623460856 2.450000e-88 337.0
8 TraesCS1D01G192400 chr1B 91.257 183 11 4 5315 5493 370709476 370709295 1.530000e-60 244.0
9 TraesCS1D01G192400 chr1A 93.154 1855 82 19 684 2512 334205515 334203680 0.000000e+00 2680.0
10 TraesCS1D01G192400 chr1A 92.607 1258 69 12 3508 4757 334201778 334200537 0.000000e+00 1786.0
11 TraesCS1D01G192400 chr1A 94.809 732 33 3 2731 3462 334203183 334202457 0.000000e+00 1136.0
12 TraesCS1D01G192400 chr1A 92.777 443 14 4 4785 5219 334200541 334200109 4.670000e-175 625.0
13 TraesCS1D01G192400 chr1A 90.393 229 9 5 5267 5493 334200108 334199891 6.960000e-74 289.0
14 TraesCS1D01G192400 chr1A 84.375 224 12 8 2526 2729 334203445 334203225 1.210000e-46 198.0
15 TraesCS1D01G192400 chr1A 90.196 51 5 0 5361 5411 239003094 239003044 3.550000e-07 67.6
16 TraesCS1D01G192400 chr1A 97.297 37 1 0 2476 2512 384334590 384334626 4.590000e-06 63.9
17 TraesCS1D01G192400 chr5B 83.731 461 67 7 127 580 406406838 406406379 3.930000e-116 429.0
18 TraesCS1D01G192400 chr5B 88.754 329 32 4 257 580 577359977 577359649 1.110000e-106 398.0
19 TraesCS1D01G192400 chr5B 87.870 338 37 3 258 591 436250486 436250823 1.430000e-105 394.0
20 TraesCS1D01G192400 chr7B 88.955 335 33 3 251 581 93650029 93650363 1.420000e-110 411.0
21 TraesCS1D01G192400 chr3D 89.297 327 31 3 257 579 15103306 15102980 1.840000e-109 407.0
22 TraesCS1D01G192400 chr3D 92.636 258 18 1 4 260 15115881 15115624 2.420000e-98 370.0
23 TraesCS1D01G192400 chr3D 88.889 261 26 2 1 260 22916632 22916374 8.880000e-83 318.0
24 TraesCS1D01G192400 chr3D 94.805 77 3 1 184 260 105499705 105499780 9.670000e-23 119.0
25 TraesCS1D01G192400 chr3D 100.000 34 0 0 2479 2512 454235679 454235646 4.590000e-06 63.9
26 TraesCS1D01G192400 chr2B 89.124 331 31 4 257 582 549943077 549942747 1.840000e-109 407.0
27 TraesCS1D01G192400 chr3B 87.896 347 36 5 251 591 750415263 750415609 2.380000e-108 403.0
28 TraesCS1D01G192400 chr3B 90.421 261 24 1 1 260 750411090 750411350 5.270000e-90 342.0
29 TraesCS1D01G192400 chr6B 88.554 332 33 4 255 581 488890313 488889982 1.110000e-106 398.0
30 TraesCS1D01G192400 chr6B 92.000 50 4 0 5362 5411 644380459 644380410 2.750000e-08 71.3
31 TraesCS1D01G192400 chr5A 87.879 132 15 1 130 260 703629418 703629287 2.650000e-33 154.0
32 TraesCS1D01G192400 chr5A 90.000 50 5 0 5362 5411 650276622 650276671 1.280000e-06 65.8
33 TraesCS1D01G192400 chr7A 93.976 83 4 1 1063 1144 7915304 7915222 2.080000e-24 124.0
34 TraesCS1D01G192400 chr7A 89.796 49 5 0 5362 5410 519320829 519320877 4.590000e-06 63.9
35 TraesCS1D01G192400 chr7A 89.796 49 5 0 5362 5410 519573899 519573947 4.590000e-06 63.9
36 TraesCS1D01G192400 chrUn 93.827 81 4 1 1063 1143 51203404 51203483 2.690000e-23 121.0
37 TraesCS1D01G192400 chrUn 97.143 35 1 0 2479 2513 56924744 56924710 5.940000e-05 60.2
38 TraesCS1D01G192400 chr7D 92.771 83 5 1 1063 1144 7074845 7074763 9.670000e-23 119.0
39 TraesCS1D01G192400 chr6D 94.000 50 3 0 5362 5411 428415273 428415224 5.900000e-10 76.8
40 TraesCS1D01G192400 chr6D 95.455 44 0 2 5369 5412 428414952 428414993 9.870000e-08 69.4
41 TraesCS1D01G192400 chr4D 100.000 35 0 0 2478 2512 119751927 119751893 1.280000e-06 65.8
42 TraesCS1D01G192400 chr4D 97.143 35 1 0 2479 2513 221302106 221302072 5.940000e-05 60.2
43 TraesCS1D01G192400 chr4A 93.023 43 3 0 2471 2513 441757706 441757664 4.590000e-06 63.9
44 TraesCS1D01G192400 chr5D 97.143 35 1 0 649 683 359057097 359057131 5.940000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G192400 chr1D 268704015 268709507 5492 False 10144.00 10144 100.0000 1 5493 1 chr1D.!!$F1 5492
1 TraesCS1D01G192400 chr1B 370726752 370731787 5035 True 1659.75 2865 92.2175 680 5298 4 chr1B.!!$R3 4618
2 TraesCS1D01G192400 chr1A 334199891 334205515 5624 True 1119.00 2680 91.3525 684 5493 6 chr1A.!!$R2 4809
3 TraesCS1D01G192400 chr3B 750411090 750415609 4519 False 372.50 403 89.1585 1 591 2 chr3B.!!$F1 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 821 0.249784 CATCACGCTATGCAGAGGCT 60.250 55.0 10.92 0.00 41.91 4.58 F
661 969 0.467384 ATGGTCTGATGGCCTCTTCG 59.533 55.0 3.32 0.00 0.00 3.79 F
1950 2282 0.912486 GGGCCCAATAGTCAGTGACT 59.088 55.0 27.98 27.98 45.54 3.41 F
3506 4769 0.098200 CGCTGCATGTGATCAAGTGG 59.902 55.0 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2178 2510 0.252421 AGCCACATCCACTCTCCTCA 60.252 55.000 0.00 0.0 0.00 3.86 R
2364 2696 1.338020 GCCTTGCAAGTTGTACAAGCT 59.662 47.619 24.35 6.7 39.55 3.74 R
3556 4822 0.248458 CCCGCAAATACCGTGCATTC 60.248 55.000 0.00 0.0 42.33 2.67 R
5379 8810 1.202976 ACACCAGGAGCATTTGAGCTT 60.203 47.619 0.00 0.0 46.75 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 1.597854 CGCAGAGGTTGAGGTGCAA 60.598 57.895 0.00 0.00 35.57 4.08
72 73 2.993853 CCTCTGGGGCCTCTTCAC 59.006 66.667 3.07 0.00 0.00 3.18
79 80 2.436824 GGCCTCTTCACCTTCGCC 60.437 66.667 0.00 0.00 0.00 5.54
82 83 2.048222 CTCTTCACCTTCGCCGCA 60.048 61.111 0.00 0.00 0.00 5.69
85 86 1.019278 TCTTCACCTTCGCCGCATTC 61.019 55.000 0.00 0.00 0.00 2.67
86 87 1.298157 CTTCACCTTCGCCGCATTCA 61.298 55.000 0.00 0.00 0.00 2.57
94 95 1.883084 CGCCGCATTCACCTACTCC 60.883 63.158 0.00 0.00 0.00 3.85
132 133 0.321671 ACATGTTGCTACTGCCGACT 59.678 50.000 0.00 0.00 38.71 4.18
138 140 1.292223 GCTACTGCCGACTTCACCA 59.708 57.895 0.00 0.00 0.00 4.17
175 177 2.280592 GGGCGTCACTTCGTTGGT 60.281 61.111 0.00 0.00 0.00 3.67
193 195 2.954868 GTCGATGGTACGGCAGCG 60.955 66.667 3.75 3.75 37.83 5.18
199 201 2.506438 GGTACGGCAGCGACTGAC 60.506 66.667 10.46 6.81 35.89 3.51
211 213 0.724549 CGACTGACGAGGACTCTCTG 59.275 60.000 0.00 2.15 45.77 3.35
236 238 2.125310 CCATGCGTAGGACGGCAA 60.125 61.111 0.00 0.00 42.82 4.52
238 240 2.125269 ATGCGTAGGACGGCAACC 60.125 61.111 0.00 0.00 42.82 3.77
260 262 2.674177 CGCAACCTCGACTATGAAGGTT 60.674 50.000 0.24 0.24 42.86 3.50
261 263 3.428452 CGCAACCTCGACTATGAAGGTTA 60.428 47.826 5.75 0.00 40.47 2.85
265 267 6.338146 CAACCTCGACTATGAAGGTTATTCA 58.662 40.000 5.75 0.00 40.47 2.57
267 269 6.516718 ACCTCGACTATGAAGGTTATTCATG 58.483 40.000 12.22 6.10 39.30 3.07
269 271 4.982295 TCGACTATGAAGGTTATTCATGCG 59.018 41.667 12.22 12.18 39.30 4.73
270 272 4.745125 CGACTATGAAGGTTATTCATGCGT 59.255 41.667 12.22 9.28 39.30 5.24
271 273 5.332581 CGACTATGAAGGTTATTCATGCGTG 60.333 44.000 12.22 0.00 39.30 5.34
272 274 5.428253 ACTATGAAGGTTATTCATGCGTGT 58.572 37.500 12.22 4.69 39.30 4.49
274 276 5.734855 ATGAAGGTTATTCATGCGTGTAC 57.265 39.130 5.68 0.82 37.71 2.90
275 277 4.570930 TGAAGGTTATTCATGCGTGTACA 58.429 39.130 5.68 0.00 0.00 2.90
277 279 8.091237 ATGAAGGTTATTCATGCGTGTACACG 62.091 42.308 37.44 37.44 42.85 4.49
286 288 4.088421 GTGTACACGATGGCTCCG 57.912 61.111 10.84 0.00 0.00 4.63
288 290 0.452987 GTGTACACGATGGCTCCGTA 59.547 55.000 10.84 0.00 38.29 4.02
291 293 1.026182 TACACGATGGCTCCGTACGT 61.026 55.000 15.21 0.00 38.29 3.57
292 294 1.872234 CACGATGGCTCCGTACGTG 60.872 63.158 15.21 7.80 45.46 4.49
293 295 2.278596 CGATGGCTCCGTACGTGG 60.279 66.667 15.21 7.41 0.00 4.94
294 296 2.890371 GATGGCTCCGTACGTGGT 59.110 61.111 15.21 0.00 0.00 4.16
296 298 2.624437 GATGGCTCCGTACGTGGTCC 62.624 65.000 15.21 9.94 0.00 4.46
297 299 3.376078 GGCTCCGTACGTGGTCCA 61.376 66.667 15.21 0.00 0.00 4.02
299 301 1.226888 GCTCCGTACGTGGTCCATC 60.227 63.158 15.21 0.00 0.00 3.51
300 302 1.436336 CTCCGTACGTGGTCCATCC 59.564 63.158 15.21 0.00 0.00 3.51
301 303 1.000521 TCCGTACGTGGTCCATCCT 60.001 57.895 15.21 0.00 37.07 3.24
303 305 1.518572 CGTACGTGGTCCATCCTGC 60.519 63.158 7.22 0.00 37.07 4.85
304 306 1.594833 GTACGTGGTCCATCCTGCA 59.405 57.895 0.00 0.00 37.07 4.41
305 307 0.739813 GTACGTGGTCCATCCTGCAC 60.740 60.000 0.00 0.00 37.07 4.57
306 308 1.188871 TACGTGGTCCATCCTGCACA 61.189 55.000 0.00 0.00 37.07 4.57
310 312 2.123428 GGTCCATCCTGCACATGCC 61.123 63.158 0.49 0.00 41.18 4.40
311 313 2.124612 TCCATCCTGCACATGCCG 60.125 61.111 0.49 0.00 41.18 5.69
312 314 3.214123 CCATCCTGCACATGCCGG 61.214 66.667 7.94 7.94 45.33 6.13
331 333 3.452474 CGGAGGACAGAGAGCTTTTATG 58.548 50.000 0.00 0.00 0.00 1.90
332 334 3.131223 CGGAGGACAGAGAGCTTTTATGA 59.869 47.826 0.00 0.00 0.00 2.15
333 335 4.202202 CGGAGGACAGAGAGCTTTTATGAT 60.202 45.833 0.00 0.00 0.00 2.45
335 337 5.163364 GGAGGACAGAGAGCTTTTATGATGA 60.163 44.000 0.00 0.00 0.00 2.92
336 338 5.669477 AGGACAGAGAGCTTTTATGATGAC 58.331 41.667 0.00 0.00 0.00 3.06
337 339 4.505922 GGACAGAGAGCTTTTATGATGACG 59.494 45.833 0.00 0.00 0.00 4.35
338 340 5.078411 ACAGAGAGCTTTTATGATGACGT 57.922 39.130 0.00 0.00 0.00 4.34
339 341 5.105752 ACAGAGAGCTTTTATGATGACGTC 58.894 41.667 9.11 9.11 0.00 4.34
340 342 5.105554 ACAGAGAGCTTTTATGATGACGTCT 60.106 40.000 17.92 1.84 0.00 4.18
341 343 6.095580 ACAGAGAGCTTTTATGATGACGTCTA 59.904 38.462 17.92 3.52 0.00 2.59
342 344 6.416455 CAGAGAGCTTTTATGATGACGTCTAC 59.584 42.308 17.92 10.99 0.00 2.59
343 345 6.095580 AGAGAGCTTTTATGATGACGTCTACA 59.904 38.462 17.92 16.19 0.00 2.74
344 346 6.037098 AGAGCTTTTATGATGACGTCTACAC 58.963 40.000 17.92 6.07 0.00 2.90
357 359 3.067721 GTCTACACGACTGGAGCATAC 57.932 52.381 0.00 0.00 39.61 2.39
359 361 2.683362 TCTACACGACTGGAGCATACAG 59.317 50.000 0.00 1.40 41.64 2.74
365 673 1.198713 ACTGGAGCATACAGTCAGGG 58.801 55.000 2.59 0.00 45.50 4.45
367 675 1.411977 CTGGAGCATACAGTCAGGGAG 59.588 57.143 0.00 0.00 0.00 4.30
373 681 3.010420 GCATACAGTCAGGGAGGTTTTC 58.990 50.000 0.00 0.00 0.00 2.29
374 682 3.307762 GCATACAGTCAGGGAGGTTTTCT 60.308 47.826 0.00 0.00 0.00 2.52
375 683 4.508662 CATACAGTCAGGGAGGTTTTCTC 58.491 47.826 0.00 0.00 41.71 2.87
402 710 5.188434 ACATGGATGTTGGTGTAATCTCTG 58.812 41.667 0.00 0.00 37.90 3.35
405 713 6.065976 TGGATGTTGGTGTAATCTCTGAAT 57.934 37.500 0.00 0.00 0.00 2.57
407 715 7.275183 TGGATGTTGGTGTAATCTCTGAATAG 58.725 38.462 0.00 0.00 0.00 1.73
408 716 6.708054 GGATGTTGGTGTAATCTCTGAATAGG 59.292 42.308 0.00 0.00 0.00 2.57
410 718 7.437713 TGTTGGTGTAATCTCTGAATAGGAT 57.562 36.000 0.00 0.00 0.00 3.24
411 719 7.861629 TGTTGGTGTAATCTCTGAATAGGATT 58.138 34.615 0.00 0.00 34.59 3.01
412 720 8.328758 TGTTGGTGTAATCTCTGAATAGGATTT 58.671 33.333 0.00 0.00 32.78 2.17
413 721 8.616076 GTTGGTGTAATCTCTGAATAGGATTTG 58.384 37.037 0.00 0.00 32.78 2.32
414 722 7.861629 TGGTGTAATCTCTGAATAGGATTTGT 58.138 34.615 0.00 0.00 32.78 2.83
415 723 7.987458 TGGTGTAATCTCTGAATAGGATTTGTC 59.013 37.037 0.00 0.00 32.78 3.18
416 724 7.442666 GGTGTAATCTCTGAATAGGATTTGTCC 59.557 40.741 0.00 0.00 32.78 4.02
417 725 7.442666 GTGTAATCTCTGAATAGGATTTGTCCC 59.557 40.741 0.00 0.00 32.78 4.46
418 726 6.581388 AATCTCTGAATAGGATTTGTCCCA 57.419 37.500 0.00 0.00 0.00 4.37
419 727 6.581388 ATCTCTGAATAGGATTTGTCCCAA 57.419 37.500 0.00 0.00 0.00 4.12
420 728 5.745227 TCTCTGAATAGGATTTGTCCCAAC 58.255 41.667 0.00 0.00 0.00 3.77
421 729 4.855340 TCTGAATAGGATTTGTCCCAACC 58.145 43.478 0.00 0.00 0.00 3.77
423 731 5.729229 TCTGAATAGGATTTGTCCCAACCTA 59.271 40.000 0.00 0.00 37.57 3.08
425 733 5.104109 TGAATAGGATTTGTCCCAACCTAGG 60.104 44.000 7.41 7.41 36.79 3.02
426 734 1.285078 AGGATTTGTCCCAACCTAGGC 59.715 52.381 9.30 0.00 0.00 3.93
428 736 2.369394 GATTTGTCCCAACCTAGGCTG 58.631 52.381 9.30 7.00 0.00 4.85
431 739 0.690762 TGTCCCAACCTAGGCTGAAC 59.309 55.000 14.00 11.33 0.00 3.18
432 740 0.984995 GTCCCAACCTAGGCTGAACT 59.015 55.000 14.00 0.00 0.00 3.01
433 741 0.984230 TCCCAACCTAGGCTGAACTG 59.016 55.000 14.00 0.00 0.00 3.16
434 742 0.984230 CCCAACCTAGGCTGAACTGA 59.016 55.000 14.00 0.00 0.00 3.41
435 743 1.561542 CCCAACCTAGGCTGAACTGAT 59.438 52.381 14.00 0.00 0.00 2.90
436 744 2.025887 CCCAACCTAGGCTGAACTGATT 60.026 50.000 14.00 0.00 0.00 2.57
438 746 4.324254 CCCAACCTAGGCTGAACTGATTTA 60.324 45.833 14.00 0.00 0.00 1.40
440 748 5.491982 CAACCTAGGCTGAACTGATTTACT 58.508 41.667 9.30 0.00 0.00 2.24
443 751 6.543735 ACCTAGGCTGAACTGATTTACTTTT 58.456 36.000 9.30 0.00 0.00 2.27
445 753 5.126396 AGGCTGAACTGATTTACTTTTGC 57.874 39.130 0.00 0.00 0.00 3.68
446 754 4.829492 AGGCTGAACTGATTTACTTTTGCT 59.171 37.500 0.00 0.00 0.00 3.91
447 755 4.919754 GGCTGAACTGATTTACTTTTGCTG 59.080 41.667 0.00 0.00 0.00 4.41
448 756 4.383948 GCTGAACTGATTTACTTTTGCTGC 59.616 41.667 0.00 0.00 0.00 5.25
449 757 5.512753 TGAACTGATTTACTTTTGCTGCA 57.487 34.783 0.00 0.00 0.00 4.41
450 758 5.900425 TGAACTGATTTACTTTTGCTGCAA 58.100 33.333 11.69 11.69 0.00 4.08
451 759 6.336566 TGAACTGATTTACTTTTGCTGCAAA 58.663 32.000 22.84 22.84 0.00 3.68
452 760 6.815641 TGAACTGATTTACTTTTGCTGCAAAA 59.184 30.769 31.48 31.48 40.41 2.44
453 761 6.588348 ACTGATTTACTTTTGCTGCAAAAC 57.412 33.333 30.53 21.42 38.24 2.43
454 762 5.231991 ACTGATTTACTTTTGCTGCAAAACG 59.768 36.000 30.53 26.33 38.24 3.60
455 763 5.344066 TGATTTACTTTTGCTGCAAAACGA 58.656 33.333 30.53 20.26 38.24 3.85
456 764 5.982516 TGATTTACTTTTGCTGCAAAACGAT 59.017 32.000 30.53 21.85 38.24 3.73
457 765 7.142021 TGATTTACTTTTGCTGCAAAACGATA 58.858 30.769 30.53 21.01 38.24 2.92
458 766 7.812191 TGATTTACTTTTGCTGCAAAACGATAT 59.188 29.630 30.53 21.67 38.24 1.63
459 767 7.938563 TTTACTTTTGCTGCAAAACGATATT 57.061 28.000 30.53 15.65 38.24 1.28
460 768 7.938563 TTACTTTTGCTGCAAAACGATATTT 57.061 28.000 30.53 15.24 38.24 1.40
461 769 9.464714 TTTACTTTTGCTGCAAAACGATATTTA 57.535 25.926 30.53 12.17 38.24 1.40
462 770 9.632807 TTACTTTTGCTGCAAAACGATATTTAT 57.367 25.926 30.53 14.20 38.24 1.40
463 771 8.532977 ACTTTTGCTGCAAAACGATATTTATT 57.467 26.923 30.53 5.73 38.24 1.40
464 772 8.987890 ACTTTTGCTGCAAAACGATATTTATTT 58.012 25.926 30.53 9.66 38.24 1.40
470 778 8.055986 GCTGCAAAACGATATTTATTTTTAGGC 58.944 33.333 0.00 0.00 0.00 3.93
471 779 9.301153 CTGCAAAACGATATTTATTTTTAGGCT 57.699 29.630 0.00 0.00 0.00 4.58
472 780 9.646427 TGCAAAACGATATTTATTTTTAGGCTT 57.354 25.926 0.00 0.00 0.00 4.35
473 781 9.900264 GCAAAACGATATTTATTTTTAGGCTTG 57.100 29.630 0.00 0.00 0.00 4.01
483 791 9.830975 ATTTATTTTTAGGCTTGTTGAACTTGT 57.169 25.926 0.00 0.00 0.00 3.16
484 792 8.865590 TTATTTTTAGGCTTGTTGAACTTGTC 57.134 30.769 0.00 0.00 0.00 3.18
486 794 1.308998 AGGCTTGTTGAACTTGTCGG 58.691 50.000 0.00 0.00 0.00 4.79
488 796 0.663153 GCTTGTTGAACTTGTCGGCT 59.337 50.000 0.00 0.00 0.00 5.52
489 797 1.597937 GCTTGTTGAACTTGTCGGCTG 60.598 52.381 0.00 0.00 0.00 4.85
490 798 1.670811 CTTGTTGAACTTGTCGGCTGT 59.329 47.619 0.00 0.00 0.00 4.40
491 799 1.013596 TGTTGAACTTGTCGGCTGTG 58.986 50.000 0.00 0.00 0.00 3.66
492 800 1.014352 GTTGAACTTGTCGGCTGTGT 58.986 50.000 0.00 0.00 0.00 3.72
493 801 1.013596 TTGAACTTGTCGGCTGTGTG 58.986 50.000 0.00 0.00 0.00 3.82
494 802 1.279840 GAACTTGTCGGCTGTGTGC 59.720 57.895 0.00 0.00 41.94 4.57
495 803 1.436195 GAACTTGTCGGCTGTGTGCA 61.436 55.000 0.00 0.00 45.15 4.57
497 805 1.230635 ACTTGTCGGCTGTGTGCATC 61.231 55.000 0.00 0.00 45.15 3.91
498 806 1.227793 TTGTCGGCTGTGTGCATCA 60.228 52.632 0.00 0.00 45.15 3.07
499 807 1.506309 TTGTCGGCTGTGTGCATCAC 61.506 55.000 11.13 11.13 46.31 3.06
512 820 2.232750 CATCACGCTATGCAGAGGC 58.767 57.895 10.92 4.40 41.68 4.70
513 821 0.249784 CATCACGCTATGCAGAGGCT 60.250 55.000 10.92 0.00 41.91 4.58
514 822 0.249784 ATCACGCTATGCAGAGGCTG 60.250 55.000 10.92 6.09 41.91 4.85
515 823 1.886313 CACGCTATGCAGAGGCTGG 60.886 63.158 10.92 0.00 41.91 4.85
516 824 2.280660 CGCTATGCAGAGGCTGGG 60.281 66.667 10.92 0.00 41.91 4.45
517 825 2.914289 GCTATGCAGAGGCTGGGT 59.086 61.111 10.92 0.00 41.91 4.51
518 826 1.748329 CGCTATGCAGAGGCTGGGTA 61.748 60.000 10.92 0.00 41.91 3.69
519 827 0.689623 GCTATGCAGAGGCTGGGTAT 59.310 55.000 10.92 0.00 41.91 2.73
520 828 1.072965 GCTATGCAGAGGCTGGGTATT 59.927 52.381 10.92 0.00 41.91 1.89
521 829 2.487986 GCTATGCAGAGGCTGGGTATTT 60.488 50.000 10.92 0.00 41.91 1.40
522 830 2.834638 ATGCAGAGGCTGGGTATTTT 57.165 45.000 0.00 0.00 41.91 1.82
523 831 2.603075 TGCAGAGGCTGGGTATTTTT 57.397 45.000 0.00 0.00 41.91 1.94
524 832 2.446435 TGCAGAGGCTGGGTATTTTTC 58.554 47.619 0.00 0.00 41.91 2.29
525 833 2.224992 TGCAGAGGCTGGGTATTTTTCA 60.225 45.455 0.00 0.00 41.91 2.69
526 834 2.825532 GCAGAGGCTGGGTATTTTTCAA 59.174 45.455 0.00 0.00 36.96 2.69
527 835 3.448660 GCAGAGGCTGGGTATTTTTCAAT 59.551 43.478 0.00 0.00 36.96 2.57
528 836 4.678840 GCAGAGGCTGGGTATTTTTCAATG 60.679 45.833 0.00 0.00 36.96 2.82
529 837 3.448660 AGAGGCTGGGTATTTTTCAATGC 59.551 43.478 0.00 0.00 0.00 3.56
530 838 2.166254 AGGCTGGGTATTTTTCAATGCG 59.834 45.455 0.00 0.00 0.00 4.73
531 839 2.539476 GCTGGGTATTTTTCAATGCGG 58.461 47.619 0.00 0.00 0.00 5.69
532 840 2.094234 GCTGGGTATTTTTCAATGCGGT 60.094 45.455 0.00 0.00 0.00 5.68
533 841 3.616317 GCTGGGTATTTTTCAATGCGGTT 60.616 43.478 0.00 0.00 0.00 4.44
534 842 3.919216 TGGGTATTTTTCAATGCGGTTG 58.081 40.909 0.00 0.00 39.25 3.77
535 843 3.322254 TGGGTATTTTTCAATGCGGTTGT 59.678 39.130 2.14 0.00 38.95 3.32
536 844 4.523173 TGGGTATTTTTCAATGCGGTTGTA 59.477 37.500 2.14 0.00 38.95 2.41
537 845 5.186021 TGGGTATTTTTCAATGCGGTTGTAT 59.814 36.000 2.14 0.00 38.95 2.29
538 846 5.746721 GGGTATTTTTCAATGCGGTTGTATC 59.253 40.000 2.14 0.00 38.95 2.24
539 847 6.326375 GGTATTTTTCAATGCGGTTGTATCA 58.674 36.000 2.14 0.00 38.95 2.15
540 848 6.252655 GGTATTTTTCAATGCGGTTGTATCAC 59.747 38.462 2.14 0.00 38.95 3.06
541 849 3.840890 TTTCAATGCGGTTGTATCACC 57.159 42.857 2.14 0.00 38.95 4.02
542 850 2.779755 TCAATGCGGTTGTATCACCT 57.220 45.000 2.14 0.00 38.95 4.00
543 851 2.627945 TCAATGCGGTTGTATCACCTC 58.372 47.619 2.14 0.00 38.95 3.85
544 852 1.327460 CAATGCGGTTGTATCACCTCG 59.673 52.381 0.00 0.00 34.22 4.63
545 853 0.821517 ATGCGGTTGTATCACCTCGA 59.178 50.000 0.00 0.00 34.22 4.04
546 854 0.821517 TGCGGTTGTATCACCTCGAT 59.178 50.000 0.00 0.00 38.21 3.59
547 855 2.025898 TGCGGTTGTATCACCTCGATA 58.974 47.619 0.00 0.00 35.39 2.92
548 856 2.626266 TGCGGTTGTATCACCTCGATAT 59.374 45.455 0.00 0.00 38.85 1.63
549 857 3.243336 GCGGTTGTATCACCTCGATATC 58.757 50.000 0.00 0.00 38.85 1.63
550 858 3.305131 GCGGTTGTATCACCTCGATATCA 60.305 47.826 3.12 0.00 38.85 2.15
551 859 4.794981 GCGGTTGTATCACCTCGATATCAA 60.795 45.833 3.12 0.00 38.85 2.57
552 860 5.470368 CGGTTGTATCACCTCGATATCAAT 58.530 41.667 3.12 0.00 38.85 2.57
553 861 5.926542 CGGTTGTATCACCTCGATATCAATT 59.073 40.000 3.12 0.00 38.85 2.32
554 862 6.128822 CGGTTGTATCACCTCGATATCAATTG 60.129 42.308 3.12 0.00 38.85 2.32
555 863 6.929049 GGTTGTATCACCTCGATATCAATTGA 59.071 38.462 11.26 11.26 38.85 2.57
556 864 7.441157 GGTTGTATCACCTCGATATCAATTGAA 59.559 37.037 13.09 2.57 38.85 2.69
557 865 8.993121 GTTGTATCACCTCGATATCAATTGAAT 58.007 33.333 13.09 7.46 38.85 2.57
606 914 2.203042 TTTTTGACCGCCCGACGT 60.203 55.556 0.00 0.00 41.42 4.34
608 916 0.531532 TTTTTGACCGCCCGACGTTA 60.532 50.000 0.00 0.00 41.42 3.18
609 917 1.220817 TTTTGACCGCCCGACGTTAC 61.221 55.000 0.00 0.00 41.42 2.50
610 918 2.360949 TTTGACCGCCCGACGTTACA 62.361 55.000 0.00 0.00 41.42 2.41
612 920 3.976902 GACCGCCCGACGTTACAGG 62.977 68.421 0.00 0.00 41.42 4.00
615 923 4.462280 GCCCGACGTTACAGGGGG 62.462 72.222 17.18 10.18 45.18 5.40
629 937 3.608432 GGGGGTTTGAGCAGATGC 58.392 61.111 0.00 0.00 42.49 3.91
647 955 6.588719 AGATGCTCTGATAGTCTTATGGTC 57.411 41.667 0.00 0.00 0.00 4.02
648 956 6.314120 AGATGCTCTGATAGTCTTATGGTCT 58.686 40.000 0.00 0.00 0.00 3.85
649 957 5.781210 TGCTCTGATAGTCTTATGGTCTG 57.219 43.478 0.00 0.00 0.00 3.51
650 958 5.449553 TGCTCTGATAGTCTTATGGTCTGA 58.550 41.667 0.00 0.00 0.00 3.27
652 960 6.015603 TGCTCTGATAGTCTTATGGTCTGATG 60.016 42.308 0.00 0.00 0.00 3.07
653 961 6.572119 GCTCTGATAGTCTTATGGTCTGATGG 60.572 46.154 0.00 0.00 0.00 3.51
654 962 5.244851 TCTGATAGTCTTATGGTCTGATGGC 59.755 44.000 0.00 0.00 0.00 4.40
655 963 4.284490 TGATAGTCTTATGGTCTGATGGCC 59.716 45.833 0.00 0.00 0.00 5.36
656 964 2.769209 AGTCTTATGGTCTGATGGCCT 58.231 47.619 3.32 0.00 0.00 5.19
658 966 2.703007 GTCTTATGGTCTGATGGCCTCT 59.297 50.000 3.32 0.00 0.00 3.69
659 967 3.135530 GTCTTATGGTCTGATGGCCTCTT 59.864 47.826 3.32 0.00 0.00 2.85
660 968 3.389329 TCTTATGGTCTGATGGCCTCTTC 59.611 47.826 3.32 0.00 0.00 2.87
661 969 0.467384 ATGGTCTGATGGCCTCTTCG 59.533 55.000 3.32 0.00 0.00 3.79
665 973 1.880340 CTGATGGCCTCTTCGCGAC 60.880 63.158 9.15 0.00 0.00 5.19
666 974 2.290122 CTGATGGCCTCTTCGCGACT 62.290 60.000 9.15 0.00 0.00 4.18
667 975 1.590259 GATGGCCTCTTCGCGACTC 60.590 63.158 9.15 0.00 0.00 3.36
688 996 1.665679 GCATGGACAAGGTACGTGATG 59.334 52.381 5.01 0.00 41.23 3.07
702 1010 2.158957 ACGTGATGAACTGAGTGGTGTT 60.159 45.455 0.00 0.00 0.00 3.32
704 1012 3.312421 CGTGATGAACTGAGTGGTGTTTT 59.688 43.478 0.00 0.00 0.00 2.43
1190 1503 3.869272 CGACGCATTCTGCCTGCC 61.869 66.667 0.00 0.00 41.12 4.85
1196 1509 1.511305 CATTCTGCCTGCCTGCTTG 59.489 57.895 0.00 0.00 0.00 4.01
1541 1864 3.065510 TCGGAGTTTTTGTTGCGAAATCA 59.934 39.130 0.00 0.00 34.23 2.57
1557 1880 4.038522 CGAAATCAGAGGAGATTAGGAGCA 59.961 45.833 0.00 0.00 37.24 4.26
1631 1954 5.652452 GGATTACAAATGTATATCTGGCCCC 59.348 44.000 0.00 0.00 0.00 5.80
1801 2130 3.003378 GCGCATAGTTTGGGGATAGTTTC 59.997 47.826 0.30 0.00 38.66 2.78
1822 2154 3.634448 TCCAGCTAGCAGATAGTCAGAAC 59.366 47.826 18.83 0.00 33.65 3.01
1826 2158 3.549221 GCTAGCAGATAGTCAGAACGTCC 60.549 52.174 10.63 0.00 33.65 4.79
1855 2187 6.258230 TGCATTTCACCTTGTATCTTTCAG 57.742 37.500 0.00 0.00 0.00 3.02
1912 2244 4.278975 ACCAGTAGCAAGAAGGAAGAAG 57.721 45.455 0.00 0.00 0.00 2.85
1950 2282 0.912486 GGGCCCAATAGTCAGTGACT 59.088 55.000 27.98 27.98 45.54 3.41
1953 2285 2.350522 GCCCAATAGTCAGTGACTGTG 58.649 52.381 31.70 26.58 43.30 3.66
2063 2395 9.549078 CTACTCAGCTATATAAGATCGGTGATA 57.451 37.037 0.00 0.00 32.53 2.15
2174 2506 7.442969 TGTGTTATCTCGAAGGTGTTAAATGTT 59.557 33.333 0.00 0.00 0.00 2.71
2178 2510 6.687081 TCTCGAAGGTGTTAAATGTTTTGT 57.313 33.333 0.00 0.00 0.00 2.83
2285 2617 4.098044 TGCCTTACAAGTAGAGGAGATTCG 59.902 45.833 10.59 0.00 32.11 3.34
2308 2640 3.198635 CCTCAACATGATAGGACTGGTGT 59.801 47.826 0.00 0.00 31.64 4.16
2350 2682 2.425668 GAGGAGCTATCTATCTTCCGCC 59.574 54.545 0.00 0.00 0.00 6.13
2363 2695 3.228453 TCTTCCGCCGGAACTCTATATT 58.772 45.455 15.93 0.00 36.71 1.28
2364 2696 4.401022 TCTTCCGCCGGAACTCTATATTA 58.599 43.478 15.93 0.00 36.71 0.98
2365 2697 4.458295 TCTTCCGCCGGAACTCTATATTAG 59.542 45.833 15.93 0.65 36.71 1.73
2366 2698 2.490903 TCCGCCGGAACTCTATATTAGC 59.509 50.000 1.70 0.00 0.00 3.09
2523 2878 3.186409 TGACGCTCAAATTTCAGTGCTAC 59.814 43.478 2.19 0.00 0.00 3.58
2533 3094 2.029288 CAGTGCTACAGCCACGTGG 61.029 63.158 30.66 30.66 41.18 4.94
2652 3213 4.851639 AGATAAACTGCTGTTCCCTCAT 57.148 40.909 9.60 0.00 34.96 2.90
2759 3387 5.772825 TGAATTTTGAGCTATATGCCACC 57.227 39.130 0.00 0.00 44.23 4.61
2773 3401 1.079543 CCACCAGACGCCTTGAGAG 60.080 63.158 0.00 0.00 0.00 3.20
2790 3420 6.874664 CCTTGAGAGTGATGGAGATATCATTG 59.125 42.308 5.32 0.00 39.13 2.82
2822 3452 2.154854 TATCCGTCTTGCTAGCATGC 57.845 50.000 20.13 10.51 0.00 4.06
2895 3525 7.902920 ATTTGGCTGACCTTGTATATTGAAT 57.097 32.000 0.00 0.00 36.63 2.57
3038 3668 6.463360 TCTGATAGCACAACTGTTGTATTCA 58.537 36.000 24.30 20.34 43.23 2.57
3040 3670 7.607607 TCTGATAGCACAACTGTTGTATTCATT 59.392 33.333 24.30 8.84 43.23 2.57
3078 3708 4.788100 GCGATTATTTGCTGTGTTACACTG 59.212 41.667 16.79 16.54 35.11 3.66
3102 3732 9.490379 CTGTCCTAACTGTTATGAGTTTAGTTT 57.510 33.333 5.88 0.00 37.38 2.66
3174 3804 9.679661 TCATTATTACAATCTGCAAGTTAAGGA 57.320 29.630 0.00 0.00 33.76 3.36
3290 3920 3.627577 GTCATCGCAATTGGTTCATACCT 59.372 43.478 7.72 0.00 45.27 3.08
3362 3992 9.430399 ACCTCATCATTAAATCAAGGATCATTT 57.570 29.630 0.00 0.00 35.51 2.32
3432 4062 5.091552 AGGGTTGGTTTAGTGATAGTGAGA 58.908 41.667 0.00 0.00 0.00 3.27
3435 4065 5.336213 GGTTGGTTTAGTGATAGTGAGACGA 60.336 44.000 0.00 0.00 0.00 4.20
3436 4066 5.562506 TGGTTTAGTGATAGTGAGACGAG 57.437 43.478 0.00 0.00 0.00 4.18
3443 4073 8.502105 TTAGTGATAGTGAGACGAGTATTTCA 57.498 34.615 0.00 0.00 0.00 2.69
3454 4084 7.066374 AGACGAGTATTTCAGCAGAATTTTC 57.934 36.000 0.00 0.00 32.89 2.29
3468 4534 9.199982 CAGCAGAATTTTCAACATTATTGTCTT 57.800 29.630 0.00 0.00 34.06 3.01
3488 4554 3.214697 TGGTAAATTGAACATGCTGCG 57.785 42.857 0.00 0.00 0.00 5.18
3501 4567 2.757056 GCTGCGCTGCATGTGATCA 61.757 57.895 31.12 0.00 38.13 2.92
3506 4769 0.098200 CGCTGCATGTGATCAAGTGG 59.902 55.000 0.00 0.00 0.00 4.00
3520 4783 3.431725 GTGGTAGTGCCGGCAAGC 61.432 66.667 34.66 26.60 41.21 4.01
3552 4818 1.611977 CCATGCAGCCACCATATGAAG 59.388 52.381 3.65 0.00 0.00 3.02
3553 4819 2.304092 CATGCAGCCACCATATGAAGT 58.696 47.619 3.65 0.00 0.00 3.01
3554 4820 3.479489 CATGCAGCCACCATATGAAGTA 58.521 45.455 3.65 0.00 0.00 2.24
3555 4821 3.862877 TGCAGCCACCATATGAAGTAT 57.137 42.857 3.65 0.00 0.00 2.12
3556 4822 3.479489 TGCAGCCACCATATGAAGTATG 58.521 45.455 3.65 0.00 39.95 2.39
3557 4823 3.136260 TGCAGCCACCATATGAAGTATGA 59.864 43.478 3.65 0.00 42.34 2.15
3558 4824 4.136796 GCAGCCACCATATGAAGTATGAA 58.863 43.478 3.65 0.00 42.34 2.57
3566 4832 4.756642 CCATATGAAGTATGAATGCACGGT 59.243 41.667 3.65 0.00 42.34 4.83
3575 4841 0.248458 GAATGCACGGTATTTGCGGG 60.248 55.000 0.00 0.00 43.34 6.13
3576 4842 0.963355 AATGCACGGTATTTGCGGGT 60.963 50.000 0.00 0.00 43.34 5.28
3581 4847 0.831966 ACGGTATTTGCGGGTCCATA 59.168 50.000 0.00 0.00 0.00 2.74
3592 4858 2.549992 GCGGGTCCATACTGCATAATCA 60.550 50.000 0.00 0.00 0.00 2.57
3595 4861 4.154737 CGGGTCCATACTGCATAATCATTG 59.845 45.833 0.00 0.00 0.00 2.82
3614 4880 5.298276 TCATTGGTTTGACTTTGTACCTGTC 59.702 40.000 0.00 0.00 0.00 3.51
3615 4881 4.497291 TGGTTTGACTTTGTACCTGTCT 57.503 40.909 10.06 0.00 0.00 3.41
3675 4941 9.865484 GTCAAAACTTCAGAAAAGTACATACTC 57.135 33.333 0.00 0.00 34.99 2.59
3685 4951 5.499004 AAAGTACATACTCCAAGCAAGGA 57.501 39.130 0.00 0.00 34.99 3.36
3686 4952 5.499004 AAGTACATACTCCAAGCAAGGAA 57.501 39.130 0.00 0.00 37.20 3.36
3688 4954 5.876357 AGTACATACTCCAAGCAAGGAAAA 58.124 37.500 0.00 0.00 37.20 2.29
3811 5783 6.179906 TCCATCTTGGATCTTGACTAATCC 57.820 41.667 0.00 0.00 42.67 3.01
3872 6124 6.691754 TGTTCTTCAATTGAACACAGCTAA 57.308 33.333 16.91 0.00 45.77 3.09
3880 6132 9.515020 TTCAATTGAACACAGCTAACTTTAAAG 57.485 29.630 16.91 13.76 0.00 1.85
3899 6436 9.346725 CTTTAAAGGTAATGTTGCAATTCTCTC 57.653 33.333 0.59 0.00 0.00 3.20
3942 7108 1.631405 TGCTTCCCTGATTTTGGGTG 58.369 50.000 0.00 0.00 44.84 4.61
3988 7154 3.582780 TCAAGATGCTATATGCTCGCTG 58.417 45.455 0.00 0.00 43.37 5.18
4366 7535 0.537188 AGCCATCTACAAGTGGGTCG 59.463 55.000 0.00 0.00 42.17 4.79
4393 7562 0.716108 CGCAAGAAGATGACGACACC 59.284 55.000 0.00 0.00 43.02 4.16
4394 7563 1.079503 GCAAGAAGATGACGACACCC 58.920 55.000 0.00 0.00 0.00 4.61
4419 7588 0.318869 CTTGCAGCGCCAACAATCAA 60.319 50.000 2.29 0.00 0.00 2.57
4715 7885 4.460683 GTATGGGTGGCGCCGACA 62.461 66.667 23.90 20.49 38.44 4.35
4720 7890 2.041686 GGGTGGCGCCGACATTTTA 61.042 57.895 23.90 0.00 38.44 1.52
4729 7899 4.493057 GGCGCCGACATTTTAGTAGTTTAC 60.493 45.833 12.58 0.00 0.00 2.01
4752 7922 6.687604 ACATTAAACTGCCAAAACATCCTAC 58.312 36.000 0.00 0.00 0.00 3.18
4765 7935 7.174946 CCAAAACATCCTACATTAGTGAACAGT 59.825 37.037 0.00 0.00 0.00 3.55
4769 7939 3.517901 TCCTACATTAGTGAACAGTGGGG 59.482 47.826 0.00 0.00 32.42 4.96
4770 7940 3.517901 CCTACATTAGTGAACAGTGGGGA 59.482 47.826 0.00 0.00 0.00 4.81
4778 7948 5.520748 AGTGAACAGTGGGGATAATTCTT 57.479 39.130 0.00 0.00 0.00 2.52
4875 8144 7.141100 ACTATTGGAATTGGTTTGTTCGTAG 57.859 36.000 0.00 0.00 0.00 3.51
4876 8145 6.938030 ACTATTGGAATTGGTTTGTTCGTAGA 59.062 34.615 0.00 0.00 0.00 2.59
4877 8146 6.834168 ATTGGAATTGGTTTGTTCGTAGAT 57.166 33.333 0.00 0.00 35.04 1.98
4878 8147 7.931578 ATTGGAATTGGTTTGTTCGTAGATA 57.068 32.000 0.00 0.00 35.04 1.98
4879 8148 7.931578 TTGGAATTGGTTTGTTCGTAGATAT 57.068 32.000 0.00 0.00 35.04 1.63
4880 8149 9.621629 ATTGGAATTGGTTTGTTCGTAGATATA 57.378 29.630 0.00 0.00 35.04 0.86
4882 8151 8.041919 TGGAATTGGTTTGTTCGTAGATATACA 58.958 33.333 0.00 0.00 35.04 2.29
4883 8152 8.548721 GGAATTGGTTTGTTCGTAGATATACAG 58.451 37.037 0.00 0.00 35.04 2.74
4983 8404 3.244770 ACTTCTTCCGGCCAAAATCACTA 60.245 43.478 2.24 0.00 0.00 2.74
5212 8643 1.520342 CAGCTGCGGGTAGAAGAGC 60.520 63.158 0.00 0.00 0.00 4.09
5250 8681 1.896220 TTGAACCATCAGGCACTCAC 58.104 50.000 0.00 0.00 34.60 3.51
5301 8732 1.338105 TGCAGTCTCCCATCTTTCACG 60.338 52.381 0.00 0.00 0.00 4.35
5302 8733 2.009042 GCAGTCTCCCATCTTTCACGG 61.009 57.143 0.00 0.00 0.00 4.94
5304 8735 1.550976 AGTCTCCCATCTTTCACGGAC 59.449 52.381 0.00 0.00 0.00 4.79
5305 8736 1.550976 GTCTCCCATCTTTCACGGACT 59.449 52.381 0.00 0.00 0.00 3.85
5306 8737 2.758979 GTCTCCCATCTTTCACGGACTA 59.241 50.000 0.00 0.00 0.00 2.59
5307 8738 3.385111 GTCTCCCATCTTTCACGGACTAT 59.615 47.826 0.00 0.00 0.00 2.12
5308 8739 3.384789 TCTCCCATCTTTCACGGACTATG 59.615 47.826 0.00 0.00 0.00 2.23
5309 8740 2.158957 TCCCATCTTTCACGGACTATGC 60.159 50.000 0.00 0.00 0.00 3.14
5310 8741 2.158900 CCCATCTTTCACGGACTATGCT 60.159 50.000 0.00 0.00 0.00 3.79
5311 8742 3.069586 CCCATCTTTCACGGACTATGCTA 59.930 47.826 0.00 0.00 0.00 3.49
5312 8743 4.262635 CCCATCTTTCACGGACTATGCTAT 60.263 45.833 0.00 0.00 0.00 2.97
5313 8744 4.687948 CCATCTTTCACGGACTATGCTATG 59.312 45.833 0.00 0.00 0.00 2.23
5378 8809 8.851145 CATCAGCAGAAGTACCTTTCTATACTA 58.149 37.037 0.00 0.00 35.70 1.82
5379 8810 8.818622 TCAGCAGAAGTACCTTTCTATACTAA 57.181 34.615 0.00 0.00 35.70 2.24
5412 8843 4.497507 GCTCCTGGTGTGAACAGTAAAAAC 60.498 45.833 0.00 0.00 34.16 2.43
5413 8844 3.623960 TCCTGGTGTGAACAGTAAAAACG 59.376 43.478 0.00 0.00 34.16 3.60
5445 8878 2.802247 GCTCAAACCTGTTTTTGGATGC 59.198 45.455 0.00 0.00 37.13 3.91
5475 8908 2.636893 AGCTCATAGGCATACTCCTTGG 59.363 50.000 0.00 0.00 37.66 3.61
5481 8914 0.548510 GGCATACTCCTTGGCTCCTT 59.451 55.000 0.00 0.00 36.76 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 1.153449 TAGGTGAATGCGGCGAAGG 60.153 57.895 12.98 0.00 0.00 3.46
79 80 1.883084 GGCGGAGTAGGTGAATGCG 60.883 63.158 0.00 0.00 0.00 4.73
82 83 2.017559 GAGCGGCGGAGTAGGTGAAT 62.018 60.000 9.78 0.00 0.00 2.57
85 86 4.554363 CGAGCGGCGGAGTAGGTG 62.554 72.222 9.78 0.00 36.03 4.00
103 104 0.320771 AGCAACATGTCCGGTGTCTC 60.321 55.000 0.00 0.00 0.00 3.36
113 114 0.321671 AGTCGGCAGTAGCAACATGT 59.678 50.000 0.00 0.00 44.61 3.21
114 115 1.394917 GAAGTCGGCAGTAGCAACATG 59.605 52.381 0.00 0.00 44.61 3.21
132 133 3.573772 CTCAGCGGCGAGTGGTGAA 62.574 63.158 12.98 0.00 42.63 3.18
160 162 1.563173 GACACCAACGAAGTGACGC 59.437 57.895 10.37 0.00 45.00 5.19
161 163 1.844003 CGACACCAACGAAGTGACG 59.156 57.895 10.37 11.33 45.00 4.35
163 165 1.604438 CCATCGACACCAACGAAGTGA 60.604 52.381 10.37 0.00 45.00 3.41
168 170 0.109643 CGTACCATCGACACCAACGA 60.110 55.000 0.00 0.00 43.65 3.85
175 177 2.183300 GCTGCCGTACCATCGACA 59.817 61.111 0.00 0.00 0.00 4.35
193 195 1.735571 GTCAGAGAGTCCTCGTCAGTC 59.264 57.143 0.00 0.00 44.08 3.51
199 201 0.814457 CCTTGGTCAGAGAGTCCTCG 59.186 60.000 0.00 0.00 44.08 4.63
211 213 1.819632 CCTACGCATGGCCTTGGTC 60.820 63.158 19.47 3.72 0.00 4.02
236 238 0.968901 TCATAGTCGAGGTTGCGGGT 60.969 55.000 0.00 0.00 0.00 5.28
238 240 1.560923 CTTCATAGTCGAGGTTGCGG 58.439 55.000 0.00 0.00 0.00 5.69
269 271 0.452987 TACGGAGCCATCGTGTACAC 59.547 55.000 16.32 16.32 41.24 2.90
270 272 0.452987 GTACGGAGCCATCGTGTACA 59.547 55.000 6.81 0.00 41.24 2.90
271 273 0.590732 CGTACGGAGCCATCGTGTAC 60.591 60.000 7.57 3.03 41.24 2.90
272 274 1.026182 ACGTACGGAGCCATCGTGTA 61.026 55.000 21.06 0.00 41.24 2.90
274 276 1.872234 CACGTACGGAGCCATCGTG 60.872 63.158 21.06 1.00 43.77 4.35
275 277 2.488355 CACGTACGGAGCCATCGT 59.512 61.111 21.06 2.39 43.64 3.73
277 279 1.226888 GACCACGTACGGAGCCATC 60.227 63.158 21.06 4.48 0.00 3.51
278 280 2.718073 GGACCACGTACGGAGCCAT 61.718 63.158 21.06 0.00 0.00 4.40
280 282 2.624437 GATGGACCACGTACGGAGCC 62.624 65.000 21.06 14.90 0.00 4.70
281 283 1.226888 GATGGACCACGTACGGAGC 60.227 63.158 21.06 5.71 0.00 4.70
282 284 1.035932 AGGATGGACCACGTACGGAG 61.036 60.000 21.06 12.62 42.04 4.63
283 285 1.000521 AGGATGGACCACGTACGGA 60.001 57.895 21.06 0.00 42.04 4.69
284 286 1.141019 CAGGATGGACCACGTACGG 59.859 63.158 21.06 8.46 42.04 4.02
286 288 1.594833 TGCAGGATGGACCACGTAC 59.405 57.895 0.00 0.00 42.04 3.67
294 296 2.124612 CGGCATGTGCAGGATGGA 60.125 61.111 7.36 0.00 44.36 3.41
300 302 2.821366 GTCCTCCGGCATGTGCAG 60.821 66.667 7.36 2.57 44.36 4.41
301 303 3.610619 CTGTCCTCCGGCATGTGCA 62.611 63.158 7.36 0.00 44.36 4.57
303 305 1.153489 CTCTGTCCTCCGGCATGTG 60.153 63.158 0.00 0.00 0.00 3.21
304 306 1.305297 TCTCTGTCCTCCGGCATGT 60.305 57.895 0.00 0.00 0.00 3.21
305 307 1.440893 CTCTCTGTCCTCCGGCATG 59.559 63.158 0.00 0.00 0.00 4.06
306 308 2.430610 GCTCTCTGTCCTCCGGCAT 61.431 63.158 0.00 0.00 0.00 4.40
310 312 3.131223 TCATAAAAGCTCTCTGTCCTCCG 59.869 47.826 0.00 0.00 0.00 4.63
311 313 4.744795 TCATAAAAGCTCTCTGTCCTCC 57.255 45.455 0.00 0.00 0.00 4.30
312 314 5.752955 GTCATCATAAAAGCTCTCTGTCCTC 59.247 44.000 0.00 0.00 0.00 3.71
313 315 5.669477 GTCATCATAAAAGCTCTCTGTCCT 58.331 41.667 0.00 0.00 0.00 3.85
314 316 4.505922 CGTCATCATAAAAGCTCTCTGTCC 59.494 45.833 0.00 0.00 0.00 4.02
315 317 5.105752 ACGTCATCATAAAAGCTCTCTGTC 58.894 41.667 0.00 0.00 0.00 3.51
316 318 5.078411 ACGTCATCATAAAAGCTCTCTGT 57.922 39.130 0.00 0.00 0.00 3.41
317 319 5.347342 AGACGTCATCATAAAAGCTCTCTG 58.653 41.667 19.50 0.00 0.00 3.35
318 320 5.590530 AGACGTCATCATAAAAGCTCTCT 57.409 39.130 19.50 0.00 0.00 3.10
319 321 6.197468 GTGTAGACGTCATCATAAAAGCTCTC 59.803 42.308 19.50 0.00 0.00 3.20
322 324 4.798907 CGTGTAGACGTCATCATAAAAGCT 59.201 41.667 19.50 0.00 40.91 3.74
323 325 4.796830 TCGTGTAGACGTCATCATAAAAGC 59.203 41.667 19.50 2.75 46.20 3.51
324 326 6.244377 GTCGTGTAGACGTCATCATAAAAG 57.756 41.667 19.50 0.00 46.20 2.27
337 339 7.648855 GACTGTATGCTCCAGTCGTGTAGAC 62.649 52.000 12.83 0.00 46.52 2.59
338 340 2.683362 CTGTATGCTCCAGTCGTGTAGA 59.317 50.000 0.00 0.00 0.00 2.59
339 341 2.423892 ACTGTATGCTCCAGTCGTGTAG 59.576 50.000 0.00 0.00 38.81 2.74
340 342 2.422479 GACTGTATGCTCCAGTCGTGTA 59.578 50.000 12.83 0.00 46.52 2.90
341 343 1.202582 GACTGTATGCTCCAGTCGTGT 59.797 52.381 12.83 0.00 46.52 4.49
342 344 1.914634 GACTGTATGCTCCAGTCGTG 58.085 55.000 12.83 0.00 46.52 4.35
346 348 1.198713 CCCTGACTGTATGCTCCAGT 58.801 55.000 3.64 3.64 45.52 4.00
347 349 1.411977 CTCCCTGACTGTATGCTCCAG 59.588 57.143 0.00 0.00 36.01 3.86
348 350 1.489481 CTCCCTGACTGTATGCTCCA 58.511 55.000 0.00 0.00 0.00 3.86
350 352 1.490574 ACCTCCCTGACTGTATGCTC 58.509 55.000 0.00 0.00 0.00 4.26
352 354 2.789409 AAACCTCCCTGACTGTATGC 57.211 50.000 0.00 0.00 0.00 3.14
353 355 4.508662 GAGAAAACCTCCCTGACTGTATG 58.491 47.826 0.00 0.00 35.87 2.39
365 673 5.501156 ACATCCATGTTAGGAGAAAACCTC 58.499 41.667 0.00 0.00 41.90 3.85
379 687 5.045651 TCAGAGATTACACCAACATCCATGT 60.046 40.000 0.00 0.00 44.20 3.21
382 690 5.497464 TTCAGAGATTACACCAACATCCA 57.503 39.130 0.00 0.00 0.00 3.41
383 691 6.708054 CCTATTCAGAGATTACACCAACATCC 59.292 42.308 0.00 0.00 0.00 3.51
385 693 7.437713 TCCTATTCAGAGATTACACCAACAT 57.562 36.000 0.00 0.00 0.00 2.71
387 695 8.616076 CAAATCCTATTCAGAGATTACACCAAC 58.384 37.037 0.00 0.00 30.21 3.77
394 702 7.690454 TGGGACAAATCCTATTCAGAGATTA 57.310 36.000 0.00 0.00 45.46 1.75
395 703 6.581388 TGGGACAAATCCTATTCAGAGATT 57.419 37.500 0.00 0.00 45.46 2.40
412 720 0.690762 GTTCAGCCTAGGTTGGGACA 59.309 55.000 23.79 3.24 0.00 4.02
413 721 0.984995 AGTTCAGCCTAGGTTGGGAC 59.015 55.000 23.79 20.80 0.00 4.46
414 722 0.984230 CAGTTCAGCCTAGGTTGGGA 59.016 55.000 23.79 11.41 0.00 4.37
415 723 0.984230 TCAGTTCAGCCTAGGTTGGG 59.016 55.000 23.79 12.12 0.00 4.12
416 724 3.356529 AATCAGTTCAGCCTAGGTTGG 57.643 47.619 23.79 9.22 0.00 3.77
417 725 5.491982 AGTAAATCAGTTCAGCCTAGGTTG 58.508 41.667 19.02 19.02 0.00 3.77
418 726 5.763876 AGTAAATCAGTTCAGCCTAGGTT 57.236 39.130 11.31 0.00 0.00 3.50
419 727 5.763876 AAGTAAATCAGTTCAGCCTAGGT 57.236 39.130 11.31 0.00 0.00 3.08
420 728 6.623767 GCAAAAGTAAATCAGTTCAGCCTAGG 60.624 42.308 3.67 3.67 0.00 3.02
421 729 6.150140 AGCAAAAGTAAATCAGTTCAGCCTAG 59.850 38.462 0.00 0.00 0.00 3.02
423 731 4.829492 AGCAAAAGTAAATCAGTTCAGCCT 59.171 37.500 0.00 0.00 0.00 4.58
425 733 4.383948 GCAGCAAAAGTAAATCAGTTCAGC 59.616 41.667 0.00 0.00 0.00 4.26
426 734 5.522456 TGCAGCAAAAGTAAATCAGTTCAG 58.478 37.500 0.00 0.00 0.00 3.02
428 736 6.826893 TTTGCAGCAAAAGTAAATCAGTTC 57.173 33.333 18.52 0.00 29.89 3.01
431 739 5.458452 TCGTTTTGCAGCAAAAGTAAATCAG 59.542 36.000 29.70 14.88 42.77 2.90
432 740 5.344066 TCGTTTTGCAGCAAAAGTAAATCA 58.656 33.333 29.70 7.01 42.77 2.57
433 741 5.881637 TCGTTTTGCAGCAAAAGTAAATC 57.118 34.783 29.70 17.30 42.77 2.17
434 742 8.532977 AATATCGTTTTGCAGCAAAAGTAAAT 57.467 26.923 29.70 21.36 42.77 1.40
435 743 7.938563 AATATCGTTTTGCAGCAAAAGTAAA 57.061 28.000 29.70 17.60 42.77 2.01
436 744 7.938563 AAATATCGTTTTGCAGCAAAAGTAA 57.061 28.000 29.70 19.13 42.77 2.24
438 746 8.532977 AATAAATATCGTTTTGCAGCAAAAGT 57.467 26.923 29.70 20.91 42.77 2.66
443 751 9.081997 CCTAAAAATAAATATCGTTTTGCAGCA 57.918 29.630 0.00 0.00 0.00 4.41
445 753 9.301153 AGCCTAAAAATAAATATCGTTTTGCAG 57.699 29.630 0.00 0.00 0.00 4.41
446 754 9.646427 AAGCCTAAAAATAAATATCGTTTTGCA 57.354 25.926 0.00 0.00 0.00 4.08
447 755 9.900264 CAAGCCTAAAAATAAATATCGTTTTGC 57.100 29.630 0.00 0.00 0.00 3.68
457 765 9.830975 ACAAGTTCAACAAGCCTAAAAATAAAT 57.169 25.926 0.00 0.00 0.00 1.40
458 766 9.308318 GACAAGTTCAACAAGCCTAAAAATAAA 57.692 29.630 0.00 0.00 0.00 1.40
459 767 7.646130 CGACAAGTTCAACAAGCCTAAAAATAA 59.354 33.333 0.00 0.00 0.00 1.40
460 768 7.136119 CGACAAGTTCAACAAGCCTAAAAATA 58.864 34.615 0.00 0.00 0.00 1.40
461 769 5.977129 CGACAAGTTCAACAAGCCTAAAAAT 59.023 36.000 0.00 0.00 0.00 1.82
462 770 5.336744 CGACAAGTTCAACAAGCCTAAAAA 58.663 37.500 0.00 0.00 0.00 1.94
463 771 4.201970 CCGACAAGTTCAACAAGCCTAAAA 60.202 41.667 0.00 0.00 0.00 1.52
464 772 3.314080 CCGACAAGTTCAACAAGCCTAAA 59.686 43.478 0.00 0.00 0.00 1.85
466 774 2.489971 CCGACAAGTTCAACAAGCCTA 58.510 47.619 0.00 0.00 0.00 3.93
467 775 1.308998 CCGACAAGTTCAACAAGCCT 58.691 50.000 0.00 0.00 0.00 4.58
470 778 1.670811 ACAGCCGACAAGTTCAACAAG 59.329 47.619 0.00 0.00 0.00 3.16
471 779 1.400142 CACAGCCGACAAGTTCAACAA 59.600 47.619 0.00 0.00 0.00 2.83
472 780 1.013596 CACAGCCGACAAGTTCAACA 58.986 50.000 0.00 0.00 0.00 3.33
473 781 1.014352 ACACAGCCGACAAGTTCAAC 58.986 50.000 0.00 0.00 0.00 3.18
474 782 1.013596 CACACAGCCGACAAGTTCAA 58.986 50.000 0.00 0.00 0.00 2.69
475 783 1.436195 GCACACAGCCGACAAGTTCA 61.436 55.000 0.00 0.00 37.23 3.18
476 784 1.279840 GCACACAGCCGACAAGTTC 59.720 57.895 0.00 0.00 37.23 3.01
477 785 0.819259 ATGCACACAGCCGACAAGTT 60.819 50.000 0.00 0.00 44.83 2.66
479 787 1.229975 TGATGCACACAGCCGACAAG 61.230 55.000 0.00 0.00 44.83 3.16
494 802 0.249784 AGCCTCTGCATAGCGTGATG 60.250 55.000 0.00 0.00 41.13 3.07
495 803 0.249784 CAGCCTCTGCATAGCGTGAT 60.250 55.000 0.00 0.00 41.13 3.06
497 805 1.886313 CCAGCCTCTGCATAGCGTG 60.886 63.158 0.00 0.00 41.13 5.34
498 806 2.503061 CCAGCCTCTGCATAGCGT 59.497 61.111 0.00 0.00 41.13 5.07
499 807 1.748329 TACCCAGCCTCTGCATAGCG 61.748 60.000 0.00 0.00 41.13 4.26
500 808 0.689623 ATACCCAGCCTCTGCATAGC 59.310 55.000 0.00 0.00 41.13 2.97
502 810 3.951563 AAAATACCCAGCCTCTGCATA 57.048 42.857 0.00 0.00 41.13 3.14
503 811 2.834638 AAAATACCCAGCCTCTGCAT 57.165 45.000 0.00 0.00 41.13 3.96
505 813 2.446435 TGAAAAATACCCAGCCTCTGC 58.554 47.619 0.00 0.00 37.95 4.26
506 814 4.678840 GCATTGAAAAATACCCAGCCTCTG 60.679 45.833 0.00 0.00 0.00 3.35
507 815 3.448660 GCATTGAAAAATACCCAGCCTCT 59.551 43.478 0.00 0.00 0.00 3.69
508 816 3.734902 CGCATTGAAAAATACCCAGCCTC 60.735 47.826 0.00 0.00 0.00 4.70
509 817 2.166254 CGCATTGAAAAATACCCAGCCT 59.834 45.455 0.00 0.00 0.00 4.58
510 818 2.539476 CGCATTGAAAAATACCCAGCC 58.461 47.619 0.00 0.00 0.00 4.85
511 819 2.094234 ACCGCATTGAAAAATACCCAGC 60.094 45.455 0.00 0.00 0.00 4.85
512 820 3.866883 ACCGCATTGAAAAATACCCAG 57.133 42.857 0.00 0.00 0.00 4.45
513 821 3.322254 ACAACCGCATTGAAAAATACCCA 59.678 39.130 4.77 0.00 41.23 4.51
514 822 3.920446 ACAACCGCATTGAAAAATACCC 58.080 40.909 4.77 0.00 41.23 3.69
515 823 6.252655 GTGATACAACCGCATTGAAAAATACC 59.747 38.462 4.77 0.00 41.23 2.73
516 824 6.252655 GGTGATACAACCGCATTGAAAAATAC 59.747 38.462 4.77 0.00 41.23 1.89
517 825 6.151985 AGGTGATACAACCGCATTGAAAAATA 59.848 34.615 4.77 0.00 45.53 1.40
518 826 5.047377 AGGTGATACAACCGCATTGAAAAAT 60.047 36.000 4.77 0.00 45.53 1.82
519 827 4.279671 AGGTGATACAACCGCATTGAAAAA 59.720 37.500 4.77 0.00 45.53 1.94
520 828 3.823873 AGGTGATACAACCGCATTGAAAA 59.176 39.130 4.77 0.00 45.53 2.29
521 829 3.417101 AGGTGATACAACCGCATTGAAA 58.583 40.909 4.77 0.00 45.53 2.69
522 830 3.006940 GAGGTGATACAACCGCATTGAA 58.993 45.455 4.77 0.00 45.53 2.69
523 831 2.627945 GAGGTGATACAACCGCATTGA 58.372 47.619 4.77 0.00 45.53 2.57
524 832 1.327460 CGAGGTGATACAACCGCATTG 59.673 52.381 0.00 0.00 45.53 2.82
525 833 1.206132 TCGAGGTGATACAACCGCATT 59.794 47.619 0.00 0.00 45.53 3.56
526 834 0.821517 TCGAGGTGATACAACCGCAT 59.178 50.000 0.00 0.00 45.53 4.73
527 835 0.821517 ATCGAGGTGATACAACCGCA 59.178 50.000 0.00 0.00 45.53 5.69
528 836 2.787601 TATCGAGGTGATACAACCGC 57.212 50.000 0.00 0.00 45.53 5.68
529 837 4.499037 TGATATCGAGGTGATACAACCG 57.501 45.455 0.00 0.00 45.53 4.44
530 838 6.929049 TCAATTGATATCGAGGTGATACAACC 59.071 38.462 3.38 0.00 42.24 3.77
531 839 7.946655 TCAATTGATATCGAGGTGATACAAC 57.053 36.000 3.38 0.00 42.24 3.32
591 899 1.664333 GTAACGTCGGGCGGTCAAA 60.664 57.895 7.03 0.00 46.52 2.69
592 900 2.049248 GTAACGTCGGGCGGTCAA 60.049 61.111 7.03 0.00 46.52 3.18
593 901 3.271706 CTGTAACGTCGGGCGGTCA 62.272 63.158 7.03 0.00 46.52 4.02
594 902 2.505557 CTGTAACGTCGGGCGGTC 60.506 66.667 7.03 0.00 46.52 4.79
595 903 4.060038 CCTGTAACGTCGGGCGGT 62.060 66.667 7.03 0.89 46.52 5.68
598 906 4.462280 CCCCCTGTAACGTCGGGC 62.462 72.222 0.00 0.00 36.62 6.13
612 920 3.608432 GCATCTGCTCAAACCCCC 58.392 61.111 0.00 0.00 38.21 5.40
626 934 6.073981 TCAGACCATAAGACTATCAGAGCAT 58.926 40.000 0.00 0.00 0.00 3.79
627 935 5.449553 TCAGACCATAAGACTATCAGAGCA 58.550 41.667 0.00 0.00 0.00 4.26
628 936 6.389091 CATCAGACCATAAGACTATCAGAGC 58.611 44.000 0.00 0.00 0.00 4.09
629 937 6.572119 GCCATCAGACCATAAGACTATCAGAG 60.572 46.154 0.00 0.00 0.00 3.35
630 938 5.244851 GCCATCAGACCATAAGACTATCAGA 59.755 44.000 0.00 0.00 0.00 3.27
632 940 4.284490 GGCCATCAGACCATAAGACTATCA 59.716 45.833 0.00 0.00 0.00 2.15
633 941 4.530161 AGGCCATCAGACCATAAGACTATC 59.470 45.833 5.01 0.00 0.00 2.08
634 942 4.497516 AGGCCATCAGACCATAAGACTAT 58.502 43.478 5.01 0.00 0.00 2.12
635 943 3.898123 GAGGCCATCAGACCATAAGACTA 59.102 47.826 5.01 0.00 0.00 2.59
636 944 2.703007 GAGGCCATCAGACCATAAGACT 59.297 50.000 5.01 0.00 0.00 3.24
637 945 2.703007 AGAGGCCATCAGACCATAAGAC 59.297 50.000 5.01 0.00 0.00 3.01
638 946 3.051940 AGAGGCCATCAGACCATAAGA 57.948 47.619 5.01 0.00 0.00 2.10
639 947 3.737850 GAAGAGGCCATCAGACCATAAG 58.262 50.000 5.01 0.00 0.00 1.73
641 949 1.688735 CGAAGAGGCCATCAGACCATA 59.311 52.381 5.01 0.00 0.00 2.74
642 950 0.467384 CGAAGAGGCCATCAGACCAT 59.533 55.000 5.01 0.00 0.00 3.55
644 952 1.522580 GCGAAGAGGCCATCAGACC 60.523 63.158 5.01 0.00 0.00 3.85
646 954 2.052104 TCGCGAAGAGGCCATCAGA 61.052 57.895 6.20 0.00 0.00 3.27
647 955 1.880340 GTCGCGAAGAGGCCATCAG 60.880 63.158 12.06 0.00 0.00 2.90
648 956 2.184322 GTCGCGAAGAGGCCATCA 59.816 61.111 12.06 0.00 0.00 3.07
649 957 1.590259 GAGTCGCGAAGAGGCCATC 60.590 63.158 12.06 0.00 26.46 3.51
650 958 2.496817 GAGTCGCGAAGAGGCCAT 59.503 61.111 12.06 0.00 26.46 4.40
665 973 0.108804 ACGTACCTTGTCCATGCGAG 60.109 55.000 0.00 0.00 0.00 5.03
666 974 0.389296 CACGTACCTTGTCCATGCGA 60.389 55.000 0.00 0.00 0.00 5.10
667 975 0.389296 TCACGTACCTTGTCCATGCG 60.389 55.000 0.00 0.00 0.00 4.73
669 977 3.245518 TCATCACGTACCTTGTCCATG 57.754 47.619 0.00 0.00 0.00 3.66
670 978 3.260884 AGTTCATCACGTACCTTGTCCAT 59.739 43.478 0.00 0.00 0.00 3.41
671 979 2.631062 AGTTCATCACGTACCTTGTCCA 59.369 45.455 0.00 0.00 0.00 4.02
672 980 2.993899 CAGTTCATCACGTACCTTGTCC 59.006 50.000 0.00 0.00 0.00 4.02
673 981 3.909430 TCAGTTCATCACGTACCTTGTC 58.091 45.455 0.00 0.00 0.00 3.18
675 983 3.675225 CACTCAGTTCATCACGTACCTTG 59.325 47.826 0.00 0.00 0.00 3.61
676 984 3.306088 CCACTCAGTTCATCACGTACCTT 60.306 47.826 0.00 0.00 0.00 3.50
678 986 2.029290 ACCACTCAGTTCATCACGTACC 60.029 50.000 0.00 0.00 0.00 3.34
704 1012 5.573669 GGTTGTAGCAACGTGAAAAAGAAAA 59.426 36.000 6.00 0.00 0.00 2.29
706 1014 4.664188 GGTTGTAGCAACGTGAAAAAGAA 58.336 39.130 6.00 0.00 0.00 2.52
715 1023 1.654317 TTTCACGGTTGTAGCAACGT 58.346 45.000 6.00 5.21 40.60 3.99
716 1024 2.570169 CATTTCACGGTTGTAGCAACG 58.430 47.619 6.00 4.68 0.00 4.10
717 1025 2.550606 TCCATTTCACGGTTGTAGCAAC 59.449 45.455 3.62 3.62 0.00 4.17
718 1026 2.852449 TCCATTTCACGGTTGTAGCAA 58.148 42.857 0.00 0.00 0.00 3.91
720 1028 2.095415 GGTTCCATTTCACGGTTGTAGC 60.095 50.000 0.00 0.00 0.00 3.58
721 1029 3.142951 TGGTTCCATTTCACGGTTGTAG 58.857 45.455 0.00 0.00 0.00 2.74
722 1030 3.142951 CTGGTTCCATTTCACGGTTGTA 58.857 45.455 0.00 0.00 0.00 2.41
723 1031 1.953686 CTGGTTCCATTTCACGGTTGT 59.046 47.619 0.00 0.00 0.00 3.32
724 1032 1.335872 GCTGGTTCCATTTCACGGTTG 60.336 52.381 0.00 0.00 0.00 3.77
725 1033 0.958822 GCTGGTTCCATTTCACGGTT 59.041 50.000 0.00 0.00 0.00 4.44
1190 1503 4.120755 GGAGGAGGGGGCAAGCAG 62.121 72.222 0.00 0.00 0.00 4.24
1196 1509 3.418623 ATCTGGAGGAGGAGGGGGC 62.419 68.421 0.00 0.00 0.00 5.80
1202 1515 0.649992 ATTGGGGATCTGGAGGAGGA 59.350 55.000 0.00 0.00 0.00 3.71
1541 1864 4.968080 AGAACAATGCTCCTAATCTCCTCT 59.032 41.667 0.00 0.00 0.00 3.69
1557 1880 4.946157 CCAGTGGCTAATCAGAAGAACAAT 59.054 41.667 0.00 0.00 0.00 2.71
1801 2130 3.549827 CGTTCTGACTATCTGCTAGCTGG 60.550 52.174 20.06 11.19 0.00 4.85
1822 2154 2.418628 AGGTGAAATGCATAAACGGACG 59.581 45.455 0.00 0.00 0.00 4.79
1826 2158 6.785191 AGATACAAGGTGAAATGCATAAACG 58.215 36.000 0.00 0.00 0.00 3.60
1855 2187 0.441145 CGGTTAACCAGCAACGTAGC 59.559 55.000 24.14 0.00 35.14 3.58
1872 2204 1.519751 TTCCCGTTTGATGGTTGCGG 61.520 55.000 0.00 0.00 41.82 5.69
1880 2212 1.349688 TGCTACTGGTTCCCGTTTGAT 59.650 47.619 0.00 0.00 0.00 2.57
1882 2214 1.535462 CTTGCTACTGGTTCCCGTTTG 59.465 52.381 0.00 0.00 0.00 2.93
1902 2234 3.755905 CCAGCTTTCCTTCTTCTTCCTTC 59.244 47.826 0.00 0.00 0.00 3.46
1912 2244 1.680249 CCCTGCTACCAGCTTTCCTTC 60.680 57.143 0.00 0.00 42.97 3.46
1950 2282 5.163561 GGGAACAGAAACATTTCAAGTCACA 60.164 40.000 7.10 0.00 39.61 3.58
1953 2285 5.281727 GTGGGAACAGAAACATTTCAAGTC 58.718 41.667 7.10 1.12 44.46 3.01
1957 2289 3.383185 GTGGTGGGAACAGAAACATTTCA 59.617 43.478 7.10 0.00 44.46 2.69
2052 2384 5.977635 TCAACACTTCAATATCACCGATCT 58.022 37.500 0.00 0.00 0.00 2.75
2092 2424 2.224402 GCTCTCAAACAAGTCCACTCCT 60.224 50.000 0.00 0.00 0.00 3.69
2174 2506 2.038952 CCACATCCACTCTCCTCACAAA 59.961 50.000 0.00 0.00 0.00 2.83
2178 2510 0.252421 AGCCACATCCACTCTCCTCA 60.252 55.000 0.00 0.00 0.00 3.86
2285 2617 2.171448 ACCAGTCCTATCATGTTGAGGC 59.829 50.000 0.00 0.00 0.00 4.70
2350 2682 8.136165 AGTTGTACAAGCTAATATAGAGTTCCG 58.864 37.037 8.98 0.00 0.00 4.30
2363 2695 2.552315 GCCTTGCAAGTTGTACAAGCTA 59.448 45.455 24.35 5.48 39.55 3.32
2364 2696 1.338020 GCCTTGCAAGTTGTACAAGCT 59.662 47.619 24.35 6.70 39.55 3.74
2365 2697 1.338020 AGCCTTGCAAGTTGTACAAGC 59.662 47.619 24.35 17.03 39.55 4.01
2366 2698 2.618241 TGAGCCTTGCAAGTTGTACAAG 59.382 45.455 24.35 13.40 40.36 3.16
2523 2878 2.093306 TAATTGACTCCACGTGGCTG 57.907 50.000 30.25 24.68 34.44 4.85
2533 3094 7.041780 ACCAATCGAACATAGCATAATTGACTC 60.042 37.037 0.00 0.00 0.00 3.36
2628 3189 4.287067 TGAGGGAACAGCAGTTTATCTTCT 59.713 41.667 0.00 0.00 38.30 2.85
2652 3213 9.905713 AATCATCTTATAGCAAAACTTCAGGTA 57.094 29.630 0.00 0.00 0.00 3.08
2745 3373 1.937108 GCGTCTGGTGGCATATAGCTC 60.937 57.143 0.00 0.00 44.79 4.09
2759 3387 1.638133 CATCACTCTCAAGGCGTCTG 58.362 55.000 0.00 0.00 0.00 3.51
2773 3401 5.180117 CGGGAAACAATGATATCTCCATCAC 59.820 44.000 3.98 0.00 37.74 3.06
2790 3420 3.528532 AGACGGATAACAATCGGGAAAC 58.471 45.455 0.00 0.00 0.00 2.78
2822 3452 8.689061 TCATTTCAAATCTGAATGGGAATACTG 58.311 33.333 0.00 0.00 41.22 2.74
2895 3525 1.678728 CGATTAACCCAGCCTGCAAGA 60.679 52.381 0.00 0.00 34.07 3.02
3038 3668 1.134818 TCGCGCATGGAAGTAGTCAAT 60.135 47.619 8.75 0.00 0.00 2.57
3040 3670 0.459899 ATCGCGCATGGAAGTAGTCA 59.540 50.000 8.75 0.00 0.00 3.41
3078 3708 9.269453 ACAAACTAAACTCATAACAGTTAGGAC 57.731 33.333 3.48 0.00 35.45 3.85
3102 3732 5.584251 TGAAATATCTATGCAACGCAGAACA 59.416 36.000 0.00 0.00 43.65 3.18
3174 3804 2.750166 CTGGTATCTCCGTCGATATGCT 59.250 50.000 0.00 0.00 39.52 3.79
3260 3890 3.989167 ACCAATTGCGATGACAATTTGTG 59.011 39.130 6.80 0.00 45.63 3.33
3397 4027 4.972751 AACCAACCCTAATTTTGCATGT 57.027 36.364 0.00 0.00 0.00 3.21
3432 4062 6.801539 TGAAAATTCTGCTGAAATACTCGT 57.198 33.333 10.27 0.00 35.63 4.18
3443 4073 9.199982 CAAGACAATAATGTTGAAAATTCTGCT 57.800 29.630 0.00 0.00 40.74 4.24
3468 4534 3.214697 CGCAGCATGTTCAATTTACCA 57.785 42.857 0.00 0.00 39.31 3.25
3488 4554 1.171308 ACCACTTGATCACATGCAGC 58.829 50.000 0.00 0.00 0.00 5.25
3501 4567 1.302511 CTTGCCGGCACTACCACTT 60.303 57.895 32.95 0.00 39.03 3.16
3530 4796 0.956633 CATATGGTGGCTGCATGGTC 59.043 55.000 0.50 0.00 0.00 4.02
3552 4818 3.288242 CGCAAATACCGTGCATTCATAC 58.712 45.455 0.00 0.00 42.33 2.39
3553 4819 2.289274 CCGCAAATACCGTGCATTCATA 59.711 45.455 0.00 0.00 42.33 2.15
3554 4820 1.065401 CCGCAAATACCGTGCATTCAT 59.935 47.619 0.00 0.00 42.33 2.57
3555 4821 0.449786 CCGCAAATACCGTGCATTCA 59.550 50.000 0.00 0.00 42.33 2.57
3556 4822 0.248458 CCCGCAAATACCGTGCATTC 60.248 55.000 0.00 0.00 42.33 2.67
3557 4823 0.963355 ACCCGCAAATACCGTGCATT 60.963 50.000 0.00 0.00 42.33 3.56
3558 4824 1.373590 GACCCGCAAATACCGTGCAT 61.374 55.000 0.00 0.00 42.33 3.96
3566 4832 1.210722 TGCAGTATGGACCCGCAAATA 59.789 47.619 0.00 0.00 32.95 1.40
3575 4841 6.639632 AACCAATGATTATGCAGTATGGAC 57.360 37.500 0.00 0.00 41.42 4.02
3576 4842 6.832900 TCAAACCAATGATTATGCAGTATGGA 59.167 34.615 0.00 0.00 44.23 3.41
3581 4847 6.594788 AAGTCAAACCAATGATTATGCAGT 57.405 33.333 0.00 0.00 0.00 4.40
3592 4858 5.445964 AGACAGGTACAAAGTCAAACCAAT 58.554 37.500 12.24 0.00 34.80 3.16
3595 4861 5.830000 AAAGACAGGTACAAAGTCAAACC 57.170 39.130 12.24 0.00 34.80 3.27
3630 4896 8.730680 GTTTTGACATCTATTTGTACCATCACT 58.269 33.333 0.00 0.00 0.00 3.41
3666 4932 6.569179 TTTTTCCTTGCTTGGAGTATGTAC 57.431 37.500 0.00 0.00 37.43 2.90
3872 6124 8.860088 AGAGAATTGCAACATTACCTTTAAAGT 58.140 29.630 14.03 5.22 0.00 2.66
3880 6132 6.749923 AGAAGAGAGAATTGCAACATTACC 57.250 37.500 0.00 0.00 0.00 2.85
3899 6436 4.499183 AGAGCGAGACAACCAAATAGAAG 58.501 43.478 0.00 0.00 0.00 2.85
4153 7322 5.046529 TGCAAAACATAAAGTCGCAACAAT 58.953 33.333 0.00 0.00 0.00 2.71
4366 7535 1.478510 TCATCTTCTTGCGAGGGAGTC 59.521 52.381 0.00 0.00 0.00 3.36
4603 7772 3.206964 GGAAGTTATCAGCCTGGTTAGC 58.793 50.000 0.00 0.00 0.00 3.09
4729 7899 6.686630 TGTAGGATGTTTTGGCAGTTTAATG 58.313 36.000 0.00 0.00 0.00 1.90
4746 7916 4.164221 CCCCACTGTTCACTAATGTAGGAT 59.836 45.833 0.00 0.00 0.00 3.24
4752 7922 7.056635 AGAATTATCCCCACTGTTCACTAATG 58.943 38.462 0.00 0.00 0.00 1.90
4765 7935 8.665906 CCTTAATACCTGTAAGAATTATCCCCA 58.334 37.037 0.00 0.00 34.07 4.96
4778 7948 5.759059 TCCGAGAAGACCTTAATACCTGTA 58.241 41.667 0.00 0.00 0.00 2.74
4798 7968 3.508744 AGCATTTAAAAGCCACATCCG 57.491 42.857 11.58 0.00 0.00 4.18
4845 8015 7.589958 ACAAACCAATTCCAATAGTTGTACA 57.410 32.000 0.00 0.00 0.00 2.90
4875 8144 4.894114 ACCCGCCTGTATATCCTGTATATC 59.106 45.833 0.00 0.00 32.79 1.63
4876 8145 4.880164 ACCCGCCTGTATATCCTGTATAT 58.120 43.478 0.00 0.00 34.97 0.86
4877 8146 4.326600 ACCCGCCTGTATATCCTGTATA 57.673 45.455 0.00 0.00 0.00 1.47
4878 8147 3.185880 ACCCGCCTGTATATCCTGTAT 57.814 47.619 0.00 0.00 0.00 2.29
4879 8148 2.688902 ACCCGCCTGTATATCCTGTA 57.311 50.000 0.00 0.00 0.00 2.74
4880 8149 2.245582 GTACCCGCCTGTATATCCTGT 58.754 52.381 0.00 0.00 0.00 4.00
4882 8151 2.245582 GTGTACCCGCCTGTATATCCT 58.754 52.381 0.00 0.00 0.00 3.24
4883 8152 1.965643 TGTGTACCCGCCTGTATATCC 59.034 52.381 0.00 0.00 0.00 2.59
4983 8404 7.338957 TGATTTTGGCAAAAAGAAGGTCAAAAT 59.661 29.630 27.25 13.88 42.35 1.82
4994 8416 9.396938 GGATTAAATTGTGATTTTGGCAAAAAG 57.603 29.630 27.25 0.00 38.62 2.27
5212 8643 6.202954 GGTTCAATGGACTTTATCTGTATCCG 59.797 42.308 0.00 0.00 31.65 4.18
5250 8681 7.002250 TGGAGATGGAGAAATAATCAGCTAG 57.998 40.000 0.00 0.00 0.00 3.42
5301 8732 4.954875 AGCTTCTGAACATAGCATAGTCC 58.045 43.478 2.29 0.00 37.37 3.85
5302 8733 5.595885 TGAGCTTCTGAACATAGCATAGTC 58.404 41.667 2.29 0.00 37.37 2.59
5304 8735 6.073167 CCATTGAGCTTCTGAACATAGCATAG 60.073 42.308 2.29 0.00 37.37 2.23
5305 8736 5.761726 CCATTGAGCTTCTGAACATAGCATA 59.238 40.000 2.29 0.00 37.37 3.14
5306 8737 4.579340 CCATTGAGCTTCTGAACATAGCAT 59.421 41.667 2.29 0.00 37.37 3.79
5307 8738 3.943381 CCATTGAGCTTCTGAACATAGCA 59.057 43.478 2.29 0.00 37.37 3.49
5308 8739 3.243002 GCCATTGAGCTTCTGAACATAGC 60.243 47.826 0.00 0.00 35.16 2.97
5309 8740 3.943381 TGCCATTGAGCTTCTGAACATAG 59.057 43.478 0.00 0.00 0.00 2.23
5310 8741 3.954200 TGCCATTGAGCTTCTGAACATA 58.046 40.909 0.00 0.00 0.00 2.29
5311 8742 2.799017 TGCCATTGAGCTTCTGAACAT 58.201 42.857 0.00 0.00 0.00 2.71
5312 8743 2.275134 TGCCATTGAGCTTCTGAACA 57.725 45.000 0.00 0.00 0.00 3.18
5313 8744 5.334724 GCTATATGCCATTGAGCTTCTGAAC 60.335 44.000 3.87 0.00 35.15 3.18
5378 8809 1.891150 CACCAGGAGCATTTGAGCTTT 59.109 47.619 0.00 0.00 46.75 3.51
5379 8810 1.202976 ACACCAGGAGCATTTGAGCTT 60.203 47.619 0.00 0.00 46.75 3.74
5412 8843 2.099098 AGGTTTGAGCTCCAAAAACACG 59.901 45.455 22.44 0.00 45.40 4.49
5413 8844 3.119137 ACAGGTTTGAGCTCCAAAAACAC 60.119 43.478 22.44 14.79 45.40 3.32
5445 8878 5.996513 AGTATGCCTATGAGCTGAAGAATTG 59.003 40.000 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.