Multiple sequence alignment - TraesCS1D01G191900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G191900 chr1D 100.000 3405 0 0 1 3405 267589471 267592875 0.000000e+00 6288
1 TraesCS1D01G191900 chr1D 87.665 681 70 14 127 797 95444631 95443955 0.000000e+00 780
2 TraesCS1D01G191900 chr1D 85.915 710 80 14 127 822 287469308 287468605 0.000000e+00 739
3 TraesCS1D01G191900 chr1D 87.050 139 5 2 1 126 311261733 311261871 9.850000e-31 145
4 TraesCS1D01G191900 chr1A 93.959 2003 74 18 845 2836 335546816 335544850 0.000000e+00 2985
5 TraesCS1D01G191900 chr1A 95.146 412 18 2 2836 3245 512457031 512456620 0.000000e+00 649
6 TraesCS1D01G191900 chr1B 95.699 1581 55 7 1019 2598 345418056 345416488 0.000000e+00 2531
7 TraesCS1D01G191900 chr1B 85.352 710 91 10 127 828 673607662 673606958 0.000000e+00 723
8 TraesCS1D01G191900 chr1B 87.840 625 59 11 127 743 619213259 619213874 0.000000e+00 717
9 TraesCS1D01G191900 chr1B 91.139 158 13 1 3248 3405 345411656 345411500 2.660000e-51 213
10 TraesCS1D01G191900 chr1B 83.665 251 15 10 2586 2834 345411876 345411650 2.660000e-51 213
11 TraesCS1D01G191900 chr1B 80.711 197 18 10 624 820 624813169 624812993 5.930000e-28 135
12 TraesCS1D01G191900 chr3D 86.969 683 78 9 127 800 464321707 464321027 0.000000e+00 758
13 TraesCS1D01G191900 chr5A 86.009 679 84 8 127 797 357810040 357810715 0.000000e+00 717
14 TraesCS1D01G191900 chr5A 97.317 410 11 0 2836 3245 312273927 312274336 0.000000e+00 697
15 TraesCS1D01G191900 chr5A 96.107 411 15 1 2836 3245 609808058 609807648 0.000000e+00 669
16 TraesCS1D01G191900 chr5A 95.192 416 14 5 2834 3245 650289475 650289062 0.000000e+00 652
17 TraesCS1D01G191900 chr6D 86.957 644 69 11 127 757 86597456 86598097 0.000000e+00 710
18 TraesCS1D01G191900 chr6D 97.647 85 2 0 42 126 277065335 277065251 2.740000e-31 147
19 TraesCS1D01G191900 chr6D 97.619 84 2 0 43 126 94008634 94008551 9.850000e-31 145
20 TraesCS1D01G191900 chr6B 85.206 703 87 15 127 820 574428551 574427857 0.000000e+00 706
21 TraesCS1D01G191900 chr6B 96.867 415 11 2 2834 3247 26784066 26784479 0.000000e+00 693
22 TraesCS1D01G191900 chr6B 81.321 787 104 28 48 822 579989811 579989056 1.750000e-167 599
23 TraesCS1D01G191900 chr4A 97.037 405 10 2 2836 3240 609085455 609085857 0.000000e+00 680
24 TraesCS1D01G191900 chr3A 96.594 411 8 3 2836 3245 696065232 696064827 0.000000e+00 676
25 TraesCS1D01G191900 chr3A 94.565 92 4 1 40 130 130601223 130601314 1.270000e-29 141
26 TraesCS1D01G191900 chr7D 84.322 708 92 13 127 822 592476149 592475449 0.000000e+00 675
27 TraesCS1D01G191900 chr7D 95.894 414 13 4 2836 3246 52945190 52944778 0.000000e+00 667
28 TraesCS1D01G191900 chr7D 98.795 83 1 0 42 124 408363350 408363432 7.610000e-32 148
29 TraesCS1D01G191900 chr2A 93.166 439 23 7 2831 3267 7328411 7328844 3.710000e-179 638
30 TraesCS1D01G191900 chr5B 96.667 90 3 0 41 130 526315839 526315928 2.120000e-32 150
31 TraesCS1D01G191900 chr2B 96.629 89 3 0 42 130 396073443 396073355 7.610000e-32 148
32 TraesCS1D01G191900 chr2D 96.552 87 3 0 40 126 45365808 45365722 9.850000e-31 145
33 TraesCS1D01G191900 chr3B 95.556 90 3 1 42 131 690846840 690846928 3.540000e-30 143
34 TraesCS1D01G191900 chr4D 86.667 135 5 7 2 124 188560068 188559935 1.650000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G191900 chr1D 267589471 267592875 3404 False 6288 6288 100.000 1 3405 1 chr1D.!!$F1 3404
1 TraesCS1D01G191900 chr1D 95443955 95444631 676 True 780 780 87.665 127 797 1 chr1D.!!$R1 670
2 TraesCS1D01G191900 chr1D 287468605 287469308 703 True 739 739 85.915 127 822 1 chr1D.!!$R2 695
3 TraesCS1D01G191900 chr1A 335544850 335546816 1966 True 2985 2985 93.959 845 2836 1 chr1A.!!$R1 1991
4 TraesCS1D01G191900 chr1B 345416488 345418056 1568 True 2531 2531 95.699 1019 2598 1 chr1B.!!$R1 1579
5 TraesCS1D01G191900 chr1B 673606958 673607662 704 True 723 723 85.352 127 828 1 chr1B.!!$R3 701
6 TraesCS1D01G191900 chr1B 619213259 619213874 615 False 717 717 87.840 127 743 1 chr1B.!!$F1 616
7 TraesCS1D01G191900 chr3D 464321027 464321707 680 True 758 758 86.969 127 800 1 chr3D.!!$R1 673
8 TraesCS1D01G191900 chr5A 357810040 357810715 675 False 717 717 86.009 127 797 1 chr5A.!!$F2 670
9 TraesCS1D01G191900 chr6D 86597456 86598097 641 False 710 710 86.957 127 757 1 chr6D.!!$F1 630
10 TraesCS1D01G191900 chr6B 574427857 574428551 694 True 706 706 85.206 127 820 1 chr6B.!!$R1 693
11 TraesCS1D01G191900 chr6B 579989056 579989811 755 True 599 599 81.321 48 822 1 chr6B.!!$R2 774
12 TraesCS1D01G191900 chr7D 592475449 592476149 700 True 675 675 84.322 127 822 1 chr7D.!!$R2 695

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.0 3.79 3.79 38.76 3.96 F
721 754 0.311477 GCGTTTGAGGGCCGTTTTAA 59.689 50.0 0.00 0.00 0.00 1.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1575 1618 0.394565 ATACCAAGATGCGGGAGAGC 59.605 55.0 0.0 0.0 37.71 4.09 R
2481 2527 0.753479 TCCTCACCCGAGAGAGCATC 60.753 60.0 0.0 0.0 42.34 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.392769 TGTCAAACGTTTCCACTTTCG 57.607 42.857 11.37 0.00 0.00 3.46
27 28 2.096174 TGTCAAACGTTTCCACTTTCGG 59.904 45.455 11.37 0.00 0.00 4.30
28 29 2.096335 GTCAAACGTTTCCACTTTCGGT 59.904 45.455 11.37 0.00 0.00 4.69
29 30 2.352342 TCAAACGTTTCCACTTTCGGTC 59.648 45.455 11.37 0.00 0.00 4.79
30 31 2.320745 AACGTTTCCACTTTCGGTCT 57.679 45.000 0.00 0.00 0.00 3.85
31 32 3.457610 AACGTTTCCACTTTCGGTCTA 57.542 42.857 0.00 0.00 0.00 2.59
32 33 3.457610 ACGTTTCCACTTTCGGTCTAA 57.542 42.857 0.00 0.00 0.00 2.10
33 34 3.795877 ACGTTTCCACTTTCGGTCTAAA 58.204 40.909 0.00 0.00 0.00 1.85
34 35 3.805971 ACGTTTCCACTTTCGGTCTAAAG 59.194 43.478 0.00 0.00 41.35 1.85
35 36 3.185797 CGTTTCCACTTTCGGTCTAAAGG 59.814 47.826 0.00 0.00 40.16 3.11
36 37 3.412237 TTCCACTTTCGGTCTAAAGGG 57.588 47.619 0.00 0.00 40.16 3.95
37 38 2.332117 TCCACTTTCGGTCTAAAGGGT 58.668 47.619 0.00 0.00 38.05 4.34
38 39 3.509442 TCCACTTTCGGTCTAAAGGGTA 58.491 45.455 0.00 0.00 38.05 3.69
39 40 3.259123 TCCACTTTCGGTCTAAAGGGTAC 59.741 47.826 0.00 0.00 38.05 3.34
40 41 3.248266 CACTTTCGGTCTAAAGGGTACG 58.752 50.000 0.00 0.00 40.16 3.67
41 42 2.265683 CTTTCGGTCTAAAGGGTACGC 58.734 52.381 0.77 0.77 33.64 4.42
42 43 0.532115 TTCGGTCTAAAGGGTACGCC 59.468 55.000 6.27 0.00 0.00 5.68
57 58 2.797278 CGCCCCCTCTCGTTGCTAT 61.797 63.158 0.00 0.00 0.00 2.97
58 59 1.227674 GCCCCCTCTCGTTGCTATG 60.228 63.158 0.00 0.00 0.00 2.23
59 60 1.227674 CCCCCTCTCGTTGCTATGC 60.228 63.158 0.00 0.00 0.00 3.14
60 61 1.522092 CCCCTCTCGTTGCTATGCA 59.478 57.895 0.00 0.00 36.47 3.96
61 62 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
62 63 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
63 64 1.069823 CCCTCTCGTTGCTATGCATCT 59.930 52.381 0.19 0.00 38.76 2.90
65 66 2.402305 CTCTCGTTGCTATGCATCTCC 58.598 52.381 0.19 0.00 38.76 3.71
67 68 2.432146 TCTCGTTGCTATGCATCTCCTT 59.568 45.455 0.19 0.00 38.76 3.36
79 80 4.639334 TGCATCTCCTTGATAGATCTTGC 58.361 43.478 0.00 0.69 31.22 4.01
80 81 3.679025 GCATCTCCTTGATAGATCTTGCG 59.321 47.826 0.00 0.00 31.22 4.85
81 82 4.798924 GCATCTCCTTGATAGATCTTGCGT 60.799 45.833 0.00 0.00 31.22 5.24
82 83 4.313277 TCTCCTTGATAGATCTTGCGTG 57.687 45.455 0.00 0.00 0.00 5.34
83 84 3.954258 TCTCCTTGATAGATCTTGCGTGA 59.046 43.478 0.00 0.00 0.00 4.35
84 85 4.037327 TCTCCTTGATAGATCTTGCGTGAG 59.963 45.833 0.00 1.23 0.00 3.51
118 119 4.871993 TTTGAAATTGCATGCAACGTTT 57.128 31.818 34.10 28.81 38.88 3.60
149 156 2.845659 TCTCCCTTTGATTGAGCCCTA 58.154 47.619 0.00 0.00 0.00 3.53
296 303 1.203994 CGTCGGTCCATACTCCTTGTT 59.796 52.381 0.00 0.00 0.00 2.83
569 589 4.501433 AGAGGAGATAGCAAATGGATCCT 58.499 43.478 14.23 0.00 38.39 3.24
612 635 1.080638 TGCAATTTAGGGTGGGGTCT 58.919 50.000 0.00 0.00 0.00 3.85
621 644 3.311110 GTGGGGTCTGGCTGTCGA 61.311 66.667 0.00 0.00 0.00 4.20
670 699 3.757270 CCCCATAACCGCCACATATTTA 58.243 45.455 0.00 0.00 0.00 1.40
682 711 4.096984 GCCACATATTTAGGCTGGATATGC 59.903 45.833 21.81 11.46 44.92 3.14
685 716 2.496899 ATTTAGGCTGGATATGCGGG 57.503 50.000 5.10 0.00 0.00 6.13
686 717 1.429930 TTTAGGCTGGATATGCGGGA 58.570 50.000 5.10 0.00 0.00 5.14
721 754 0.311477 GCGTTTGAGGGCCGTTTTAA 59.689 50.000 0.00 0.00 0.00 1.52
723 756 1.664874 CGTTTGAGGGCCGTTTTAAGC 60.665 52.381 0.00 0.00 0.00 3.09
743 776 2.009774 CGGCTCGTCTGGATCAAAAAT 58.990 47.619 0.00 0.00 0.00 1.82
744 777 2.030946 CGGCTCGTCTGGATCAAAAATC 59.969 50.000 0.00 0.00 0.00 2.17
745 778 3.009723 GGCTCGTCTGGATCAAAAATCA 58.990 45.455 0.00 0.00 0.00 2.57
746 779 3.629398 GGCTCGTCTGGATCAAAAATCAT 59.371 43.478 0.00 0.00 0.00 2.45
748 781 5.296780 GGCTCGTCTGGATCAAAAATCATAA 59.703 40.000 0.00 0.00 0.00 1.90
749 782 6.016777 GGCTCGTCTGGATCAAAAATCATAAT 60.017 38.462 0.00 0.00 0.00 1.28
750 783 7.074502 GCTCGTCTGGATCAAAAATCATAATC 58.925 38.462 0.00 0.00 0.00 1.75
800 836 1.860641 TGAGGCGGATTTGAGAGGTA 58.139 50.000 0.00 0.00 0.00 3.08
801 837 2.398588 TGAGGCGGATTTGAGAGGTAT 58.601 47.619 0.00 0.00 0.00 2.73
802 838 2.103094 TGAGGCGGATTTGAGAGGTATG 59.897 50.000 0.00 0.00 0.00 2.39
803 839 1.417890 AGGCGGATTTGAGAGGTATGG 59.582 52.381 0.00 0.00 0.00 2.74
804 840 1.141053 GGCGGATTTGAGAGGTATGGT 59.859 52.381 0.00 0.00 0.00 3.55
825 861 5.423931 TGGTGGTTGTAGATGCTCTTATACA 59.576 40.000 0.00 0.00 0.00 2.29
831 867 6.937436 TGTAGATGCTCTTATACAACTCGA 57.063 37.500 0.00 0.00 0.00 4.04
832 868 7.329588 TGTAGATGCTCTTATACAACTCGAA 57.670 36.000 0.00 0.00 0.00 3.71
833 869 7.418408 TGTAGATGCTCTTATACAACTCGAAG 58.582 38.462 0.00 0.00 0.00 3.79
834 870 5.837437 AGATGCTCTTATACAACTCGAAGG 58.163 41.667 0.00 0.00 0.00 3.46
835 871 5.594725 AGATGCTCTTATACAACTCGAAGGA 59.405 40.000 0.00 0.00 0.00 3.36
836 872 5.654603 TGCTCTTATACAACTCGAAGGAA 57.345 39.130 0.00 0.00 0.00 3.36
837 873 6.222038 TGCTCTTATACAACTCGAAGGAAT 57.778 37.500 0.00 0.00 0.00 3.01
838 874 7.342769 TGCTCTTATACAACTCGAAGGAATA 57.657 36.000 0.00 0.00 0.00 1.75
839 875 7.952671 TGCTCTTATACAACTCGAAGGAATAT 58.047 34.615 0.00 0.00 0.00 1.28
840 876 8.082852 TGCTCTTATACAACTCGAAGGAATATC 58.917 37.037 0.00 0.00 0.00 1.63
841 877 8.301002 GCTCTTATACAACTCGAAGGAATATCT 58.699 37.037 0.00 0.00 0.00 1.98
849 885 8.936864 ACAACTCGAAGGAATATCTAAAAAGTG 58.063 33.333 0.00 0.00 0.00 3.16
850 886 7.541122 ACTCGAAGGAATATCTAAAAAGTGC 57.459 36.000 0.00 0.00 0.00 4.40
851 887 6.539103 ACTCGAAGGAATATCTAAAAAGTGCC 59.461 38.462 0.00 0.00 0.00 5.01
852 888 5.522460 TCGAAGGAATATCTAAAAAGTGCCG 59.478 40.000 0.00 0.00 0.00 5.69
866 902 5.366829 AAAGTGCCGTAAACCATAGTTTC 57.633 39.130 0.00 0.00 42.67 2.78
957 993 2.806745 GCTCTAACAAGTGTGTGGCTGA 60.807 50.000 0.00 0.00 38.27 4.26
979 1015 2.110006 GCAGGGGCGGAGAGAATC 59.890 66.667 0.00 0.00 0.00 2.52
1218 1261 2.044946 GGTGACATCCACTGCCCC 60.045 66.667 0.00 0.00 45.03 5.80
1575 1618 4.148825 CTGTCCGCCCTTCCCTCG 62.149 72.222 0.00 0.00 0.00 4.63
1617 1660 1.978617 CCGCACCAAGGCCAAATCT 60.979 57.895 5.01 0.00 0.00 2.40
1854 1897 2.035626 CGGGGCAGGGTGTTCATT 59.964 61.111 0.00 0.00 0.00 2.57
2004 2047 2.743636 ACGATGAGATCACCGTGTTT 57.256 45.000 0.43 0.00 45.74 2.83
2046 2089 1.741401 CGATCTCTTGGCGGCACAA 60.741 57.895 12.92 0.94 0.00 3.33
2090 2133 2.027625 CCAAGAACGCGTGAGGTCC 61.028 63.158 14.98 0.00 0.00 4.46
2118 2161 1.531423 ATGGATCTCATGGATTGCGC 58.469 50.000 0.00 0.00 34.33 6.09
2127 2170 2.512515 GGATTGCGCGAAGGCTCT 60.513 61.111 12.10 0.00 36.88 4.09
2128 2171 2.109126 GGATTGCGCGAAGGCTCTT 61.109 57.895 12.10 0.00 36.88 2.85
2129 2172 1.349973 GATTGCGCGAAGGCTCTTC 59.650 57.895 12.10 5.20 36.88 2.87
2130 2173 1.078848 ATTGCGCGAAGGCTCTTCT 60.079 52.632 12.10 0.00 36.88 2.85
2131 2174 0.674895 ATTGCGCGAAGGCTCTTCTT 60.675 50.000 12.10 0.00 36.88 2.52
2132 2175 1.291877 TTGCGCGAAGGCTCTTCTTC 61.292 55.000 12.10 2.68 39.64 2.87
2133 2176 1.738099 GCGCGAAGGCTCTTCTTCA 60.738 57.895 12.10 0.00 42.27 3.02
2134 2177 1.691215 GCGCGAAGGCTCTTCTTCAG 61.691 60.000 12.10 2.45 42.27 3.02
2170 2213 1.615392 GATTGCACAGGCTGTTCCTTT 59.385 47.619 19.43 1.75 44.75 3.11
2173 2216 0.312102 GCACAGGCTGTTCCTTTCAC 59.688 55.000 19.43 0.00 44.75 3.18
2293 2338 5.891034 CGATTCGAATAAGAATGTGTTGTCG 59.109 40.000 11.38 2.07 40.58 4.35
2495 2541 0.105760 ATCTGGATGCTCTCTCGGGT 60.106 55.000 0.00 0.00 0.00 5.28
2509 2555 0.397675 TCGGGTGAGGATGAGCTCAT 60.398 55.000 29.09 29.09 39.70 2.90
2543 2589 6.656693 ACAAGTGTTTTCAGATAATGGGAGAG 59.343 38.462 0.00 0.00 0.00 3.20
2565 2611 4.015541 AGACCCTAATAAGTGGGAGGAAGA 60.016 45.833 4.93 0.00 46.15 2.87
2605 2651 3.356290 GGATGGTTGTAGTTGAGCCATT 58.644 45.455 0.00 0.00 39.74 3.16
2610 2656 6.325919 TGGTTGTAGTTGAGCCATTTTTAG 57.674 37.500 0.00 0.00 0.00 1.85
2618 2664 6.218746 AGTTGAGCCATTTTTAGCTTCAAAG 58.781 36.000 0.00 0.00 40.11 2.77
2642 2689 2.086869 GTGATCCCACATCACCTGTTG 58.913 52.381 3.71 0.00 41.77 3.33
2665 2712 8.531530 GTTGCTTGGTTTTCAATATTATTAGCG 58.468 33.333 0.00 0.00 34.45 4.26
2698 2745 5.715434 TTTTGCGGGGAATATTATTAGCC 57.285 39.130 0.00 0.00 0.00 3.93
2699 2746 4.650972 TTGCGGGGAATATTATTAGCCT 57.349 40.909 0.00 0.00 0.00 4.58
2700 2747 5.765576 TTGCGGGGAATATTATTAGCCTA 57.234 39.130 0.00 0.00 0.00 3.93
2701 2748 5.968676 TGCGGGGAATATTATTAGCCTAT 57.031 39.130 0.00 0.00 0.00 2.57
2702 2749 7.440505 TTGCGGGGAATATTATTAGCCTATA 57.559 36.000 0.00 0.00 0.00 1.31
2703 2750 7.626999 TGCGGGGAATATTATTAGCCTATAT 57.373 36.000 0.00 0.00 0.00 0.86
2704 2751 7.676947 TGCGGGGAATATTATTAGCCTATATC 58.323 38.462 0.00 0.00 0.00 1.63
2705 2752 6.812160 GCGGGGAATATTATTAGCCTATATCG 59.188 42.308 0.00 0.00 0.00 2.92
2706 2753 7.309621 GCGGGGAATATTATTAGCCTATATCGA 60.310 40.741 0.00 0.00 0.00 3.59
2707 2754 8.244802 CGGGGAATATTATTAGCCTATATCGAG 58.755 40.741 0.00 0.00 0.00 4.04
2708 2755 9.091220 GGGGAATATTATTAGCCTATATCGAGT 57.909 37.037 0.00 0.00 0.00 4.18
2721 2768 9.647797 AGCCTATATCGAGTAGATAGATATTCG 57.352 37.037 8.72 0.00 44.30 3.34
2728 2775 6.812656 TCGAGTAGATAGATATTCGTCTGGAC 59.187 42.308 0.00 0.00 36.57 4.02
2737 2784 2.258591 CGTCTGGACCTGTGACGG 59.741 66.667 19.87 8.02 46.45 4.79
2741 2788 3.596066 CTGGACCTGTGACGGCCTG 62.596 68.421 0.00 0.00 0.00 4.85
2743 2790 3.626924 GACCTGTGACGGCCTGGT 61.627 66.667 0.00 7.82 36.91 4.00
2750 2797 1.911269 TGACGGCCTGGTTAGCTCA 60.911 57.895 0.00 0.00 0.00 4.26
2818 2865 3.897505 AGGACCTGAAATTTGTTGAAGGG 59.102 43.478 0.00 0.00 0.00 3.95
2820 2867 4.343814 GGACCTGAAATTTGTTGAAGGGAA 59.656 41.667 0.00 0.00 0.00 3.97
2836 2883 1.414897 GAAACCGAGCGTAACAGCG 59.585 57.895 0.00 0.00 43.00 5.18
2837 2884 1.005294 GAAACCGAGCGTAACAGCGA 61.005 55.000 0.00 0.00 43.00 4.93
2838 2885 0.598158 AAACCGAGCGTAACAGCGAA 60.598 50.000 0.00 0.00 43.00 4.70
2839 2886 0.598158 AACCGAGCGTAACAGCGAAA 60.598 50.000 0.00 0.00 43.00 3.46
2840 2887 0.598158 ACCGAGCGTAACAGCGAAAA 60.598 50.000 0.00 0.00 43.00 2.29
2841 2888 0.093026 CCGAGCGTAACAGCGAAAAG 59.907 55.000 0.00 0.00 43.00 2.27
2842 2889 0.782384 CGAGCGTAACAGCGAAAAGT 59.218 50.000 0.00 0.00 43.00 2.66
2843 2890 1.460267 CGAGCGTAACAGCGAAAAGTG 60.460 52.381 0.00 0.00 43.00 3.16
2844 2891 0.865769 AGCGTAACAGCGAAAAGTGG 59.134 50.000 0.00 0.00 43.00 4.00
2845 2892 0.724785 GCGTAACAGCGAAAAGTGGC 60.725 55.000 0.00 0.00 0.00 5.01
2846 2893 0.865769 CGTAACAGCGAAAAGTGGCT 59.134 50.000 0.00 0.00 39.78 4.75
2850 2897 3.348236 AGCGAAAAGTGGCTGCAG 58.652 55.556 10.11 10.11 37.44 4.41
2851 2898 1.227943 AGCGAAAAGTGGCTGCAGA 60.228 52.632 20.43 0.00 37.44 4.26
2852 2899 1.208614 GCGAAAAGTGGCTGCAGAG 59.791 57.895 20.43 0.00 0.00 3.35
2853 2900 1.871772 CGAAAAGTGGCTGCAGAGG 59.128 57.895 20.43 0.00 0.00 3.69
2854 2901 1.583477 GAAAAGTGGCTGCAGAGGC 59.417 57.895 20.43 5.00 45.19 4.70
2862 2909 4.527583 CTGCAGAGGCCGAGCTCC 62.528 72.222 8.42 0.00 40.13 4.70
2864 2911 3.859414 GCAGAGGCCGAGCTCCAT 61.859 66.667 8.47 0.00 0.00 3.41
2865 2912 2.906458 CAGAGGCCGAGCTCCATT 59.094 61.111 8.47 0.00 0.00 3.16
2866 2913 1.523258 CAGAGGCCGAGCTCCATTG 60.523 63.158 8.47 0.00 0.00 2.82
2867 2914 1.687146 AGAGGCCGAGCTCCATTGA 60.687 57.895 8.47 0.00 0.00 2.57
2868 2915 1.227497 GAGGCCGAGCTCCATTGAG 60.227 63.158 8.47 0.00 41.84 3.02
2885 2932 9.149225 CTCCATTGAGCACTATATACATTTCTC 57.851 37.037 0.00 0.00 0.00 2.87
2886 2933 8.650490 TCCATTGAGCACTATATACATTTCTCA 58.350 33.333 0.00 0.00 0.00 3.27
2887 2934 8.933807 CCATTGAGCACTATATACATTTCTCAG 58.066 37.037 0.00 0.00 31.96 3.35
2888 2935 7.953158 TTGAGCACTATATACATTTCTCAGC 57.047 36.000 0.00 0.00 31.96 4.26
2889 2936 6.459066 TGAGCACTATATACATTTCTCAGCC 58.541 40.000 0.00 0.00 0.00 4.85
2890 2937 6.041979 TGAGCACTATATACATTTCTCAGCCA 59.958 38.462 0.00 0.00 0.00 4.75
2891 2938 6.830912 AGCACTATATACATTTCTCAGCCAA 58.169 36.000 0.00 0.00 0.00 4.52
2892 2939 7.282585 AGCACTATATACATTTCTCAGCCAAA 58.717 34.615 0.00 0.00 0.00 3.28
2893 2940 7.775093 AGCACTATATACATTTCTCAGCCAAAA 59.225 33.333 0.00 0.00 0.00 2.44
2894 2941 8.571336 GCACTATATACATTTCTCAGCCAAAAT 58.429 33.333 0.00 0.00 0.00 1.82
2899 2946 7.961326 ATACATTTCTCAGCCAAAATACCTT 57.039 32.000 0.00 0.00 0.00 3.50
2900 2947 6.670695 ACATTTCTCAGCCAAAATACCTTT 57.329 33.333 0.00 0.00 0.00 3.11
2901 2948 7.066307 ACATTTCTCAGCCAAAATACCTTTT 57.934 32.000 0.00 0.00 34.90 2.27
2902 2949 7.154656 ACATTTCTCAGCCAAAATACCTTTTC 58.845 34.615 0.00 0.00 32.21 2.29
2903 2950 5.722021 TTCTCAGCCAAAATACCTTTTCC 57.278 39.130 0.00 0.00 32.21 3.13
2904 2951 4.735369 TCTCAGCCAAAATACCTTTTCCA 58.265 39.130 0.00 0.00 32.21 3.53
2905 2952 5.332743 TCTCAGCCAAAATACCTTTTCCAT 58.667 37.500 0.00 0.00 32.21 3.41
2906 2953 6.489603 TCTCAGCCAAAATACCTTTTCCATA 58.510 36.000 0.00 0.00 32.21 2.74
2907 2954 6.951198 TCTCAGCCAAAATACCTTTTCCATAA 59.049 34.615 0.00 0.00 32.21 1.90
2908 2955 6.930731 TCAGCCAAAATACCTTTTCCATAAC 58.069 36.000 0.00 0.00 32.21 1.89
2909 2956 6.723977 TCAGCCAAAATACCTTTTCCATAACT 59.276 34.615 0.00 0.00 32.21 2.24
2910 2957 7.035612 CAGCCAAAATACCTTTTCCATAACTC 58.964 38.462 0.00 0.00 32.21 3.01
2911 2958 6.723977 AGCCAAAATACCTTTTCCATAACTCA 59.276 34.615 0.00 0.00 32.21 3.41
2912 2959 7.234577 AGCCAAAATACCTTTTCCATAACTCAA 59.765 33.333 0.00 0.00 32.21 3.02
2913 2960 7.875554 GCCAAAATACCTTTTCCATAACTCAAA 59.124 33.333 0.00 0.00 32.21 2.69
2914 2961 9.771534 CCAAAATACCTTTTCCATAACTCAAAA 57.228 29.630 0.00 0.00 32.21 2.44
3035 3082 7.989826 AGACAAATACACAGATTGAAATAGGC 58.010 34.615 0.00 0.00 0.00 3.93
3036 3083 7.831193 AGACAAATACACAGATTGAAATAGGCT 59.169 33.333 0.00 0.00 0.00 4.58
3037 3084 8.353423 ACAAATACACAGATTGAAATAGGCTT 57.647 30.769 0.00 0.00 0.00 4.35
3038 3085 8.806146 ACAAATACACAGATTGAAATAGGCTTT 58.194 29.630 0.00 0.00 0.00 3.51
3039 3086 9.643693 CAAATACACAGATTGAAATAGGCTTTT 57.356 29.630 0.00 0.00 0.00 2.27
3041 3088 9.860898 AATACACAGATTGAAATAGGCTTTTTC 57.139 29.630 19.53 19.53 34.40 2.29
3042 3089 7.530426 ACACAGATTGAAATAGGCTTTTTCT 57.470 32.000 24.32 10.70 34.80 2.52
3043 3090 7.955918 ACACAGATTGAAATAGGCTTTTTCTT 58.044 30.769 24.32 15.28 34.80 2.52
3044 3091 8.424133 ACACAGATTGAAATAGGCTTTTTCTTT 58.576 29.630 24.32 15.00 34.80 2.52
3045 3092 8.706035 CACAGATTGAAATAGGCTTTTTCTTTG 58.294 33.333 24.32 19.03 34.80 2.77
3046 3093 8.424133 ACAGATTGAAATAGGCTTTTTCTTTGT 58.576 29.630 24.32 19.47 34.80 2.83
3047 3094 9.264719 CAGATTGAAATAGGCTTTTTCTTTGTT 57.735 29.630 24.32 9.89 34.80 2.83
3048 3095 9.264719 AGATTGAAATAGGCTTTTTCTTTGTTG 57.735 29.630 24.32 0.00 34.80 3.33
3049 3096 8.962884 ATTGAAATAGGCTTTTTCTTTGTTGT 57.037 26.923 24.32 6.50 34.80 3.32
3055 3102 9.830975 AATAGGCTTTTTCTTTGTTGTATTTGT 57.169 25.926 0.00 0.00 0.00 2.83
3056 3103 7.538303 AGGCTTTTTCTTTGTTGTATTTGTG 57.462 32.000 0.00 0.00 0.00 3.33
3057 3104 7.102993 AGGCTTTTTCTTTGTTGTATTTGTGT 58.897 30.769 0.00 0.00 0.00 3.72
3058 3105 7.277760 AGGCTTTTTCTTTGTTGTATTTGTGTC 59.722 33.333 0.00 0.00 0.00 3.67
3059 3106 7.064016 GGCTTTTTCTTTGTTGTATTTGTGTCA 59.936 33.333 0.00 0.00 0.00 3.58
3060 3107 8.110002 GCTTTTTCTTTGTTGTATTTGTGTCAG 58.890 33.333 0.00 0.00 0.00 3.51
3061 3108 9.352784 CTTTTTCTTTGTTGTATTTGTGTCAGA 57.647 29.630 0.00 0.00 0.00 3.27
3062 3109 9.868277 TTTTTCTTTGTTGTATTTGTGTCAGAT 57.132 25.926 0.00 0.00 0.00 2.90
3094 3141 6.709145 TTTTTGTGTAGCATGCAAATGATC 57.291 33.333 21.98 4.03 33.00 2.92
3095 3142 5.388408 TTTGTGTAGCATGCAAATGATCA 57.612 34.783 21.98 0.00 27.52 2.92
3096 3143 5.388408 TTGTGTAGCATGCAAATGATCAA 57.612 34.783 21.98 12.05 27.52 2.57
3097 3144 5.388408 TGTGTAGCATGCAAATGATCAAA 57.612 34.783 21.98 0.39 27.52 2.69
3098 3145 5.968254 TGTGTAGCATGCAAATGATCAAAT 58.032 33.333 21.98 0.00 27.52 2.32
3099 3146 6.399743 TGTGTAGCATGCAAATGATCAAATT 58.600 32.000 21.98 0.00 27.52 1.82
3100 3147 7.545489 TGTGTAGCATGCAAATGATCAAATTA 58.455 30.769 21.98 0.00 27.52 1.40
3101 3148 7.703197 TGTGTAGCATGCAAATGATCAAATTAG 59.297 33.333 21.98 0.00 27.52 1.73
3102 3149 7.703621 GTGTAGCATGCAAATGATCAAATTAGT 59.296 33.333 21.98 0.00 27.52 2.24
3103 3150 8.252417 TGTAGCATGCAAATGATCAAATTAGTT 58.748 29.630 21.98 0.00 0.00 2.24
3104 3151 9.734620 GTAGCATGCAAATGATCAAATTAGTTA 57.265 29.630 21.98 0.00 0.00 2.24
3105 3152 8.638685 AGCATGCAAATGATCAAATTAGTTAC 57.361 30.769 21.98 0.00 0.00 2.50
3106 3153 8.472413 AGCATGCAAATGATCAAATTAGTTACT 58.528 29.630 21.98 0.00 0.00 2.24
3107 3154 8.537223 GCATGCAAATGATCAAATTAGTTACTG 58.463 33.333 14.21 0.00 0.00 2.74
3108 3155 9.791820 CATGCAAATGATCAAATTAGTTACTGA 57.208 29.630 0.00 0.00 0.00 3.41
3215 3262 2.949451 TTTTTGCAAAACGAGCTCCA 57.051 40.000 23.79 4.36 0.00 3.86
3216 3263 3.451141 TTTTTGCAAAACGAGCTCCAT 57.549 38.095 23.79 0.00 0.00 3.41
3217 3264 2.420628 TTTGCAAAACGAGCTCCATG 57.579 45.000 10.02 3.33 0.00 3.66
3218 3265 0.597568 TTGCAAAACGAGCTCCATGG 59.402 50.000 4.97 4.97 0.00 3.66
3219 3266 0.250684 TGCAAAACGAGCTCCATGGA 60.251 50.000 15.27 15.27 0.00 3.41
3220 3267 0.449388 GCAAAACGAGCTCCATGGAG 59.551 55.000 33.73 33.73 44.56 3.86
3228 3275 2.765807 CTCCATGGAGCCCGGTCT 60.766 66.667 28.45 0.00 35.31 3.85
3229 3276 2.285368 TCCATGGAGCCCGGTCTT 60.285 61.111 11.44 0.00 0.00 3.01
3230 3277 1.915078 CTCCATGGAGCCCGGTCTTT 61.915 60.000 28.45 0.00 35.31 2.52
3231 3278 1.750399 CCATGGAGCCCGGTCTTTG 60.750 63.158 5.56 0.00 0.00 2.77
3232 3279 2.044946 ATGGAGCCCGGTCTTTGC 60.045 61.111 0.00 0.00 0.00 3.68
3233 3280 2.905996 ATGGAGCCCGGTCTTTGCA 61.906 57.895 0.00 0.00 0.00 4.08
3234 3281 2.282180 GGAGCCCGGTCTTTGCAA 60.282 61.111 0.00 0.00 0.00 4.08
3235 3282 2.626780 GGAGCCCGGTCTTTGCAAC 61.627 63.158 0.00 0.00 0.00 4.17
3236 3283 2.966309 GAGCCCGGTCTTTGCAACG 61.966 63.158 0.00 0.00 0.00 4.10
3237 3284 4.700365 GCCCGGTCTTTGCAACGC 62.700 66.667 0.00 0.00 0.00 4.84
3238 3285 4.038080 CCCGGTCTTTGCAACGCC 62.038 66.667 0.00 2.40 0.00 5.68
3239 3286 3.283684 CCGGTCTTTGCAACGCCA 61.284 61.111 0.00 0.00 0.00 5.69
3240 3287 2.051345 CGGTCTTTGCAACGCCAC 60.051 61.111 0.00 0.00 0.00 5.01
3241 3288 2.829206 CGGTCTTTGCAACGCCACA 61.829 57.895 0.00 0.00 0.00 4.17
3242 3289 1.299089 GGTCTTTGCAACGCCACAC 60.299 57.895 0.00 0.00 0.00 3.82
3243 3290 1.724582 GGTCTTTGCAACGCCACACT 61.725 55.000 0.00 0.00 0.00 3.55
3244 3291 0.317020 GTCTTTGCAACGCCACACTC 60.317 55.000 0.00 0.00 0.00 3.51
3245 3292 0.746204 TCTTTGCAACGCCACACTCA 60.746 50.000 0.00 0.00 0.00 3.41
3246 3293 0.317269 CTTTGCAACGCCACACTCAG 60.317 55.000 0.00 0.00 0.00 3.35
3247 3294 2.335052 TTTGCAACGCCACACTCAGC 62.335 55.000 0.00 0.00 0.00 4.26
3253 3300 4.354155 GCCACACTCAGCGTAACA 57.646 55.556 0.00 0.00 0.00 2.41
3254 3301 2.153913 GCCACACTCAGCGTAACAG 58.846 57.895 0.00 0.00 0.00 3.16
3255 3302 1.901650 GCCACACTCAGCGTAACAGC 61.902 60.000 0.00 0.00 37.41 4.40
3263 3310 3.748863 AGCGTAACAGCTCCATGAG 57.251 52.632 0.00 0.00 45.67 2.90
3264 3311 0.898320 AGCGTAACAGCTCCATGAGT 59.102 50.000 0.00 0.00 45.67 3.41
3265 3312 1.002366 GCGTAACAGCTCCATGAGTG 58.998 55.000 0.00 0.00 31.39 3.51
3266 3313 1.002366 CGTAACAGCTCCATGAGTGC 58.998 55.000 0.00 0.00 35.13 4.40
3267 3314 1.373570 GTAACAGCTCCATGAGTGCC 58.626 55.000 0.00 0.00 35.51 5.01
3268 3315 0.983467 TAACAGCTCCATGAGTGCCA 59.017 50.000 0.00 0.00 35.51 4.92
3269 3316 0.330604 AACAGCTCCATGAGTGCCAT 59.669 50.000 0.00 0.00 35.51 4.40
3270 3317 1.206878 ACAGCTCCATGAGTGCCATA 58.793 50.000 0.00 0.00 35.51 2.74
3271 3318 1.561076 ACAGCTCCATGAGTGCCATAA 59.439 47.619 0.00 0.00 35.51 1.90
3272 3319 2.025981 ACAGCTCCATGAGTGCCATAAA 60.026 45.455 0.00 0.00 35.51 1.40
3273 3320 2.617308 CAGCTCCATGAGTGCCATAAAG 59.383 50.000 0.00 0.00 35.51 1.85
3274 3321 2.507058 AGCTCCATGAGTGCCATAAAGA 59.493 45.455 0.00 0.00 35.51 2.52
3275 3322 2.877168 GCTCCATGAGTGCCATAAAGAG 59.123 50.000 0.00 0.00 33.31 2.85
3276 3323 2.877168 CTCCATGAGTGCCATAAAGAGC 59.123 50.000 0.00 0.00 33.31 4.09
3277 3324 2.507058 TCCATGAGTGCCATAAAGAGCT 59.493 45.455 0.00 0.00 33.31 4.09
3278 3325 3.054139 TCCATGAGTGCCATAAAGAGCTT 60.054 43.478 0.00 0.00 33.31 3.74
3279 3326 4.164030 TCCATGAGTGCCATAAAGAGCTTA 59.836 41.667 0.00 0.00 33.31 3.09
3280 3327 4.514441 CCATGAGTGCCATAAAGAGCTTAG 59.486 45.833 0.00 0.00 33.31 2.18
3281 3328 5.363101 CATGAGTGCCATAAAGAGCTTAGA 58.637 41.667 0.00 0.00 33.31 2.10
3282 3329 5.420725 TGAGTGCCATAAAGAGCTTAGAA 57.579 39.130 0.00 0.00 0.00 2.10
3283 3330 5.994250 TGAGTGCCATAAAGAGCTTAGAAT 58.006 37.500 0.00 0.00 0.00 2.40
3284 3331 5.819379 TGAGTGCCATAAAGAGCTTAGAATG 59.181 40.000 0.00 0.00 0.00 2.67
3285 3332 5.749462 AGTGCCATAAAGAGCTTAGAATGT 58.251 37.500 0.00 0.00 0.00 2.71
3286 3333 5.587844 AGTGCCATAAAGAGCTTAGAATGTG 59.412 40.000 0.00 0.00 0.00 3.21
3287 3334 5.355350 GTGCCATAAAGAGCTTAGAATGTGT 59.645 40.000 0.00 0.00 0.00 3.72
3288 3335 5.586243 TGCCATAAAGAGCTTAGAATGTGTC 59.414 40.000 0.00 0.00 0.00 3.67
3289 3336 5.819901 GCCATAAAGAGCTTAGAATGTGTCT 59.180 40.000 0.00 0.00 40.71 3.41
3290 3337 6.317391 GCCATAAAGAGCTTAGAATGTGTCTT 59.683 38.462 0.00 0.00 37.84 3.01
3291 3338 7.678218 GCCATAAAGAGCTTAGAATGTGTCTTG 60.678 40.741 0.00 0.00 37.84 3.02
3292 3339 7.335422 CCATAAAGAGCTTAGAATGTGTCTTGT 59.665 37.037 0.00 0.00 37.84 3.16
3293 3340 6.793492 AAAGAGCTTAGAATGTGTCTTGTC 57.207 37.500 0.00 0.00 37.84 3.18
3294 3341 5.736951 AGAGCTTAGAATGTGTCTTGTCT 57.263 39.130 0.00 0.00 37.84 3.41
3295 3342 6.842437 AGAGCTTAGAATGTGTCTTGTCTA 57.158 37.500 0.00 0.00 37.84 2.59
3296 3343 7.416964 AGAGCTTAGAATGTGTCTTGTCTAT 57.583 36.000 0.00 0.00 37.84 1.98
3297 3344 8.526667 AGAGCTTAGAATGTGTCTTGTCTATA 57.473 34.615 0.00 0.00 37.84 1.31
3298 3345 9.142014 AGAGCTTAGAATGTGTCTTGTCTATAT 57.858 33.333 0.00 0.00 37.84 0.86
3299 3346 9.757227 GAGCTTAGAATGTGTCTTGTCTATATT 57.243 33.333 0.00 0.00 37.84 1.28
3300 3347 9.539825 AGCTTAGAATGTGTCTTGTCTATATTG 57.460 33.333 0.00 0.00 37.84 1.90
3301 3348 9.534565 GCTTAGAATGTGTCTTGTCTATATTGA 57.465 33.333 0.00 0.00 37.84 2.57
3305 3352 9.334947 AGAATGTGTCTTGTCTATATTGAATGG 57.665 33.333 0.00 0.00 29.66 3.16
3306 3353 6.925610 TGTGTCTTGTCTATATTGAATGGC 57.074 37.500 0.00 0.00 0.00 4.40
3307 3354 6.413892 TGTGTCTTGTCTATATTGAATGGCA 58.586 36.000 0.00 0.00 0.00 4.92
3308 3355 7.056006 TGTGTCTTGTCTATATTGAATGGCAT 58.944 34.615 0.00 0.00 0.00 4.40
3309 3356 7.557358 TGTGTCTTGTCTATATTGAATGGCATT 59.443 33.333 13.54 13.54 0.00 3.56
3310 3357 8.408601 GTGTCTTGTCTATATTGAATGGCATTT 58.591 33.333 14.93 0.79 0.00 2.32
3311 3358 8.970020 TGTCTTGTCTATATTGAATGGCATTTT 58.030 29.630 14.93 5.43 0.00 1.82
3312 3359 9.241317 GTCTTGTCTATATTGAATGGCATTTTG 57.759 33.333 14.93 0.00 0.00 2.44
3313 3360 8.415553 TCTTGTCTATATTGAATGGCATTTTGG 58.584 33.333 14.93 1.78 0.00 3.28
3314 3361 7.053316 TGTCTATATTGAATGGCATTTTGGG 57.947 36.000 14.93 2.28 0.00 4.12
3315 3362 6.041865 TGTCTATATTGAATGGCATTTTGGGG 59.958 38.462 14.93 2.76 0.00 4.96
3316 3363 2.423446 ATTGAATGGCATTTTGGGGC 57.577 45.000 14.93 0.64 0.00 5.80
3317 3364 1.360185 TTGAATGGCATTTTGGGGCT 58.640 45.000 14.93 0.00 0.00 5.19
3318 3365 2.244486 TGAATGGCATTTTGGGGCTA 57.756 45.000 14.93 0.00 0.00 3.93
3319 3366 2.544721 TGAATGGCATTTTGGGGCTAA 58.455 42.857 14.93 0.00 0.00 3.09
3320 3367 2.500910 TGAATGGCATTTTGGGGCTAAG 59.499 45.455 14.93 0.00 0.00 2.18
3321 3368 2.548464 ATGGCATTTTGGGGCTAAGA 57.452 45.000 0.00 0.00 0.00 2.10
3322 3369 2.548464 TGGCATTTTGGGGCTAAGAT 57.452 45.000 0.00 0.00 0.00 2.40
3323 3370 3.678965 TGGCATTTTGGGGCTAAGATA 57.321 42.857 0.00 0.00 0.00 1.98
3324 3371 3.987745 TGGCATTTTGGGGCTAAGATAA 58.012 40.909 0.00 0.00 0.00 1.75
3325 3372 4.357325 TGGCATTTTGGGGCTAAGATAAA 58.643 39.130 0.00 0.00 0.00 1.40
3326 3373 4.968080 TGGCATTTTGGGGCTAAGATAAAT 59.032 37.500 0.00 0.00 0.00 1.40
3327 3374 5.070313 TGGCATTTTGGGGCTAAGATAAATC 59.930 40.000 0.00 0.00 0.00 2.17
3328 3375 5.070313 GGCATTTTGGGGCTAAGATAAATCA 59.930 40.000 0.00 0.00 0.00 2.57
3329 3376 6.239686 GGCATTTTGGGGCTAAGATAAATCAT 60.240 38.462 0.00 0.00 0.00 2.45
3330 3377 6.647895 GCATTTTGGGGCTAAGATAAATCATG 59.352 38.462 0.00 0.00 0.00 3.07
3331 3378 7.471819 GCATTTTGGGGCTAAGATAAATCATGA 60.472 37.037 0.00 0.00 0.00 3.07
3332 3379 7.587037 TTTTGGGGCTAAGATAAATCATGAG 57.413 36.000 0.09 0.00 0.00 2.90
3333 3380 5.246981 TGGGGCTAAGATAAATCATGAGG 57.753 43.478 0.09 0.00 0.00 3.86
3334 3381 4.913355 TGGGGCTAAGATAAATCATGAGGA 59.087 41.667 0.09 0.00 0.00 3.71
3335 3382 5.221925 TGGGGCTAAGATAAATCATGAGGAC 60.222 44.000 0.09 0.00 0.00 3.85
3336 3383 5.221925 GGGGCTAAGATAAATCATGAGGACA 60.222 44.000 0.09 0.00 0.00 4.02
3337 3384 6.479884 GGGCTAAGATAAATCATGAGGACAT 58.520 40.000 0.09 0.00 37.19 3.06
3338 3385 6.944862 GGGCTAAGATAAATCATGAGGACATT 59.055 38.462 0.09 0.00 34.15 2.71
3339 3386 7.120432 GGGCTAAGATAAATCATGAGGACATTC 59.880 40.741 0.09 0.00 34.15 2.67
3340 3387 7.663081 GGCTAAGATAAATCATGAGGACATTCA 59.337 37.037 0.09 0.00 34.15 2.57
3341 3388 9.228949 GCTAAGATAAATCATGAGGACATTCAT 57.771 33.333 0.09 0.00 38.30 2.57
3347 3394 3.710326 CATGAGGACATTCATGGCTTG 57.290 47.619 7.86 0.00 46.81 4.01
3348 3395 1.466856 TGAGGACATTCATGGCTTGC 58.533 50.000 0.00 0.00 35.67 4.01
3349 3396 1.005097 TGAGGACATTCATGGCTTGCT 59.995 47.619 0.00 0.00 35.67 3.91
3350 3397 1.404391 GAGGACATTCATGGCTTGCTG 59.596 52.381 0.00 0.00 35.67 4.41
3351 3398 1.180029 GGACATTCATGGCTTGCTGT 58.820 50.000 7.73 7.73 35.67 4.40
3352 3399 2.025981 AGGACATTCATGGCTTGCTGTA 60.026 45.455 7.90 0.00 35.67 2.74
3353 3400 2.754552 GGACATTCATGGCTTGCTGTAA 59.245 45.455 7.90 0.00 35.67 2.41
3354 3401 3.382546 GGACATTCATGGCTTGCTGTAAT 59.617 43.478 7.90 0.00 35.67 1.89
3355 3402 4.580167 GGACATTCATGGCTTGCTGTAATA 59.420 41.667 7.90 0.00 35.67 0.98
3356 3403 5.505173 ACATTCATGGCTTGCTGTAATAC 57.495 39.130 0.00 0.00 0.00 1.89
3357 3404 4.949238 ACATTCATGGCTTGCTGTAATACA 59.051 37.500 0.00 0.00 0.00 2.29
3358 3405 5.418524 ACATTCATGGCTTGCTGTAATACAA 59.581 36.000 0.00 0.00 0.00 2.41
3359 3406 5.973899 TTCATGGCTTGCTGTAATACAAA 57.026 34.783 0.00 0.00 0.00 2.83
3360 3407 5.973899 TCATGGCTTGCTGTAATACAAAA 57.026 34.783 0.00 0.00 0.00 2.44
3361 3408 6.528537 TCATGGCTTGCTGTAATACAAAAT 57.471 33.333 0.00 0.00 0.00 1.82
3362 3409 6.563422 TCATGGCTTGCTGTAATACAAAATC 58.437 36.000 0.00 0.00 0.00 2.17
3363 3410 5.973899 TGGCTTGCTGTAATACAAAATCA 57.026 34.783 0.00 0.00 0.00 2.57
3364 3411 6.528537 TGGCTTGCTGTAATACAAAATCAT 57.471 33.333 0.00 0.00 0.00 2.45
3365 3412 6.331845 TGGCTTGCTGTAATACAAAATCATG 58.668 36.000 0.00 0.00 0.00 3.07
3366 3413 6.071447 TGGCTTGCTGTAATACAAAATCATGT 60.071 34.615 0.00 0.00 37.32 3.21
3367 3414 6.254157 GGCTTGCTGTAATACAAAATCATGTG 59.746 38.462 0.00 0.00 34.75 3.21
3368 3415 6.237648 GCTTGCTGTAATACAAAATCATGTGC 60.238 38.462 0.00 0.00 34.75 4.57
3369 3416 6.513806 TGCTGTAATACAAAATCATGTGCT 57.486 33.333 0.00 0.00 34.75 4.40
3370 3417 6.554419 TGCTGTAATACAAAATCATGTGCTC 58.446 36.000 0.00 0.00 34.75 4.26
3371 3418 6.375174 TGCTGTAATACAAAATCATGTGCTCT 59.625 34.615 0.00 0.00 34.75 4.09
3372 3419 6.690098 GCTGTAATACAAAATCATGTGCTCTG 59.310 38.462 0.00 0.00 34.75 3.35
3373 3420 7.414429 GCTGTAATACAAAATCATGTGCTCTGA 60.414 37.037 0.00 0.00 34.75 3.27
3374 3421 7.751732 TGTAATACAAAATCATGTGCTCTGAC 58.248 34.615 0.00 0.00 34.75 3.51
3375 3422 6.822667 AATACAAAATCATGTGCTCTGACA 57.177 33.333 0.00 0.00 34.75 3.58
3376 3423 4.761235 ACAAAATCATGTGCTCTGACAG 57.239 40.909 0.00 0.00 30.82 3.51
3377 3424 4.392047 ACAAAATCATGTGCTCTGACAGA 58.608 39.130 4.78 4.78 30.82 3.41
3378 3425 5.008331 ACAAAATCATGTGCTCTGACAGAT 58.992 37.500 5.42 0.00 30.82 2.90
3379 3426 6.175471 ACAAAATCATGTGCTCTGACAGATA 58.825 36.000 5.42 0.00 30.82 1.98
3380 3427 6.827251 ACAAAATCATGTGCTCTGACAGATAT 59.173 34.615 5.42 0.00 30.82 1.63
3381 3428 7.338703 ACAAAATCATGTGCTCTGACAGATATT 59.661 33.333 5.42 0.00 30.82 1.28
3382 3429 8.833493 CAAAATCATGTGCTCTGACAGATATTA 58.167 33.333 5.42 0.00 0.00 0.98
3383 3430 9.570468 AAAATCATGTGCTCTGACAGATATTAT 57.430 29.630 5.42 0.00 0.00 1.28
3384 3431 8.549338 AATCATGTGCTCTGACAGATATTATG 57.451 34.615 5.42 9.07 0.00 1.90
3385 3432 5.930569 TCATGTGCTCTGACAGATATTATGC 59.069 40.000 5.42 5.42 0.00 3.14
3386 3433 5.541953 TGTGCTCTGACAGATATTATGCT 57.458 39.130 5.42 0.00 0.00 3.79
3387 3434 5.922053 TGTGCTCTGACAGATATTATGCTT 58.078 37.500 5.42 0.00 0.00 3.91
3388 3435 5.987953 TGTGCTCTGACAGATATTATGCTTC 59.012 40.000 5.42 3.91 0.00 3.86
3389 3436 5.407995 GTGCTCTGACAGATATTATGCTTCC 59.592 44.000 5.42 0.00 0.00 3.46
3390 3437 5.306419 TGCTCTGACAGATATTATGCTTCCT 59.694 40.000 5.42 0.00 0.00 3.36
3391 3438 6.183361 TGCTCTGACAGATATTATGCTTCCTT 60.183 38.462 5.42 0.00 0.00 3.36
3392 3439 6.368516 GCTCTGACAGATATTATGCTTCCTTC 59.631 42.308 5.42 0.00 0.00 3.46
3393 3440 7.365497 TCTGACAGATATTATGCTTCCTTCA 57.635 36.000 0.00 0.00 0.00 3.02
3394 3441 7.212976 TCTGACAGATATTATGCTTCCTTCAC 58.787 38.462 0.00 0.00 0.00 3.18
3395 3442 7.070447 TCTGACAGATATTATGCTTCCTTCACT 59.930 37.037 0.00 0.00 0.00 3.41
3396 3443 7.568349 TGACAGATATTATGCTTCCTTCACTT 58.432 34.615 0.00 0.00 0.00 3.16
3397 3444 8.704668 TGACAGATATTATGCTTCCTTCACTTA 58.295 33.333 0.00 0.00 0.00 2.24
3398 3445 9.717942 GACAGATATTATGCTTCCTTCACTTAT 57.282 33.333 0.00 0.00 0.00 1.73
3399 3446 9.717942 ACAGATATTATGCTTCCTTCACTTATC 57.282 33.333 0.00 0.00 0.00 1.75
3400 3447 9.941325 CAGATATTATGCTTCCTTCACTTATCT 57.059 33.333 0.00 0.00 0.00 1.98
3402 3449 9.935241 GATATTATGCTTCCTTCACTTATCTCA 57.065 33.333 0.00 0.00 0.00 3.27
3404 3451 8.618702 ATTATGCTTCCTTCACTTATCTCATG 57.381 34.615 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.426426 CCGAAAGTGGAAACGTTTGACAA 60.426 43.478 20.10 0.00 0.00 3.18
6 7 2.096174 CCGAAAGTGGAAACGTTTGACA 59.904 45.455 20.10 14.20 0.00 3.58
7 8 2.096335 ACCGAAAGTGGAAACGTTTGAC 59.904 45.455 20.10 14.32 0.00 3.18
8 9 2.352342 GACCGAAAGTGGAAACGTTTGA 59.648 45.455 20.10 1.30 0.00 2.69
9 10 2.353579 AGACCGAAAGTGGAAACGTTTG 59.646 45.455 20.10 2.87 0.00 2.93
10 11 2.635714 AGACCGAAAGTGGAAACGTTT 58.364 42.857 14.57 14.57 0.00 3.60
11 12 2.320745 AGACCGAAAGTGGAAACGTT 57.679 45.000 0.00 0.00 0.00 3.99
12 13 3.457610 TTAGACCGAAAGTGGAAACGT 57.542 42.857 0.00 0.00 0.00 3.99
13 14 3.185797 CCTTTAGACCGAAAGTGGAAACG 59.814 47.826 2.80 0.00 35.08 3.60
14 15 3.501062 CCCTTTAGACCGAAAGTGGAAAC 59.499 47.826 2.80 0.00 35.08 2.78
15 16 3.136992 ACCCTTTAGACCGAAAGTGGAAA 59.863 43.478 12.93 0.00 35.08 3.13
16 17 2.707257 ACCCTTTAGACCGAAAGTGGAA 59.293 45.455 12.93 0.00 35.08 3.53
17 18 2.332117 ACCCTTTAGACCGAAAGTGGA 58.668 47.619 12.93 0.00 35.08 4.02
18 19 2.853235 ACCCTTTAGACCGAAAGTGG 57.147 50.000 2.80 5.65 35.08 4.00
19 20 3.248266 CGTACCCTTTAGACCGAAAGTG 58.752 50.000 2.80 0.00 35.08 3.16
20 21 2.353109 GCGTACCCTTTAGACCGAAAGT 60.353 50.000 2.80 0.00 35.08 2.66
21 22 2.265683 GCGTACCCTTTAGACCGAAAG 58.734 52.381 0.00 0.00 36.38 2.62
22 23 1.066929 GGCGTACCCTTTAGACCGAAA 60.067 52.381 0.00 0.00 0.00 3.46
23 24 0.532115 GGCGTACCCTTTAGACCGAA 59.468 55.000 0.00 0.00 0.00 4.30
24 25 2.192605 GGCGTACCCTTTAGACCGA 58.807 57.895 0.00 0.00 0.00 4.69
25 26 4.821177 GGCGTACCCTTTAGACCG 57.179 61.111 0.00 0.00 0.00 4.79
35 36 3.073101 AACGAGAGGGGGCGTACC 61.073 66.667 0.00 0.00 40.23 3.34
36 37 2.183555 CAACGAGAGGGGGCGTAC 59.816 66.667 0.00 0.00 40.23 3.67
37 38 2.842188 TAGCAACGAGAGGGGGCGTA 62.842 60.000 0.00 0.00 40.23 4.42
39 40 2.797278 ATAGCAACGAGAGGGGGCG 61.797 63.158 0.00 0.00 0.00 6.13
40 41 1.227674 CATAGCAACGAGAGGGGGC 60.228 63.158 0.00 0.00 0.00 5.80
41 42 1.227674 GCATAGCAACGAGAGGGGG 60.228 63.158 0.00 0.00 0.00 5.40
42 43 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
43 44 1.069823 AGATGCATAGCAACGAGAGGG 59.930 52.381 0.00 0.00 43.62 4.30
44 45 2.402305 GAGATGCATAGCAACGAGAGG 58.598 52.381 0.00 0.00 43.62 3.69
45 46 2.035704 AGGAGATGCATAGCAACGAGAG 59.964 50.000 0.00 0.00 43.62 3.20
46 47 2.034878 AGGAGATGCATAGCAACGAGA 58.965 47.619 0.00 0.00 43.62 4.04
57 58 4.639334 GCAAGATCTATCAAGGAGATGCA 58.361 43.478 0.00 0.00 37.57 3.96
58 59 3.679025 CGCAAGATCTATCAAGGAGATGC 59.321 47.826 0.00 0.00 37.18 3.91
59 60 4.685165 CACGCAAGATCTATCAAGGAGATG 59.315 45.833 0.00 0.00 38.09 2.90
60 61 4.586421 TCACGCAAGATCTATCAAGGAGAT 59.414 41.667 0.00 0.00 43.62 2.75
61 62 3.954258 TCACGCAAGATCTATCAAGGAGA 59.046 43.478 0.00 0.00 43.62 3.71
62 63 4.297510 CTCACGCAAGATCTATCAAGGAG 58.702 47.826 0.00 0.00 43.62 3.69
63 64 3.491619 GCTCACGCAAGATCTATCAAGGA 60.492 47.826 0.00 0.00 43.62 3.36
65 66 2.470628 CGCTCACGCAAGATCTATCAAG 59.529 50.000 0.00 0.00 43.62 3.02
67 68 1.405463 ACGCTCACGCAAGATCTATCA 59.595 47.619 0.00 0.00 45.53 2.15
99 100 2.799412 GGAAACGTTGCATGCAATTTCA 59.201 40.909 36.46 19.29 36.99 2.69
100 101 2.157474 GGGAAACGTTGCATGCAATTTC 59.843 45.455 32.54 32.54 38.28 2.17
102 103 1.069823 TGGGAAACGTTGCATGCAATT 59.930 42.857 33.94 24.43 38.28 2.32
103 104 0.678395 TGGGAAACGTTGCATGCAAT 59.322 45.000 33.94 19.60 38.28 3.56
105 106 0.249238 GTTGGGAAACGTTGCATGCA 60.249 50.000 18.46 18.46 0.00 3.96
106 107 0.249238 TGTTGGGAAACGTTGCATGC 60.249 50.000 11.82 11.82 0.00 4.06
107 108 2.030007 AGATGTTGGGAAACGTTGCATG 60.030 45.455 8.91 0.00 0.00 4.06
108 109 2.238521 AGATGTTGGGAAACGTTGCAT 58.761 42.857 8.91 3.85 0.00 3.96
112 113 3.146847 GGAGAAGATGTTGGGAAACGTT 58.853 45.455 0.00 0.00 0.00 3.99
118 119 2.986019 TCAAAGGGAGAAGATGTTGGGA 59.014 45.455 0.00 0.00 0.00 4.37
149 156 5.690464 AGTGGAGCATATTCTCAACTTCT 57.310 39.130 6.59 0.00 43.08 2.85
249 256 8.239038 AGCTTGATCAAATGATTCAAGATGAT 57.761 30.769 24.11 10.28 39.38 2.45
296 303 0.248907 GGATTCCGATGCTTCGTCGA 60.249 55.000 19.21 8.71 44.49 4.20
337 346 5.875910 ACACATTGACCGACCGAAATTATTA 59.124 36.000 0.00 0.00 0.00 0.98
480 495 2.435586 CAGCTGTTCCCAGGCTCG 60.436 66.667 5.25 0.00 39.22 5.03
569 589 3.636231 CCACCCCGAAGACCAGCA 61.636 66.667 0.00 0.00 0.00 4.41
670 699 1.681666 CATCCCGCATATCCAGCCT 59.318 57.895 0.00 0.00 0.00 4.58
721 754 1.888436 TTTGATCCAGACGAGCCGCT 61.888 55.000 0.00 0.00 0.00 5.52
723 756 1.438651 TTTTTGATCCAGACGAGCCG 58.561 50.000 0.00 0.00 0.00 5.52
763 799 4.900704 TACGTCCGGGCGGGCTAT 62.901 66.667 34.31 14.17 37.84 2.97
825 861 7.065923 GGCACTTTTTAGATATTCCTTCGAGTT 59.934 37.037 0.00 0.00 0.00 3.01
828 864 5.522460 CGGCACTTTTTAGATATTCCTTCGA 59.478 40.000 0.00 0.00 0.00 3.71
829 865 5.293569 ACGGCACTTTTTAGATATTCCTTCG 59.706 40.000 0.00 0.00 0.00 3.79
830 866 6.679327 ACGGCACTTTTTAGATATTCCTTC 57.321 37.500 0.00 0.00 0.00 3.46
831 867 8.456471 GTTTACGGCACTTTTTAGATATTCCTT 58.544 33.333 0.00 0.00 0.00 3.36
832 868 7.066645 GGTTTACGGCACTTTTTAGATATTCCT 59.933 37.037 0.00 0.00 0.00 3.36
833 869 7.148205 TGGTTTACGGCACTTTTTAGATATTCC 60.148 37.037 0.00 0.00 0.00 3.01
834 870 7.754625 TGGTTTACGGCACTTTTTAGATATTC 58.245 34.615 0.00 0.00 0.00 1.75
835 871 7.690952 TGGTTTACGGCACTTTTTAGATATT 57.309 32.000 0.00 0.00 0.00 1.28
836 872 7.875327 ATGGTTTACGGCACTTTTTAGATAT 57.125 32.000 0.00 0.00 0.00 1.63
837 873 8.042515 ACTATGGTTTACGGCACTTTTTAGATA 58.957 33.333 0.00 0.00 0.00 1.98
838 874 6.882678 ACTATGGTTTACGGCACTTTTTAGAT 59.117 34.615 0.00 0.00 0.00 1.98
839 875 6.232692 ACTATGGTTTACGGCACTTTTTAGA 58.767 36.000 0.00 0.00 0.00 2.10
840 876 6.490566 ACTATGGTTTACGGCACTTTTTAG 57.509 37.500 0.00 0.00 0.00 1.85
841 877 6.880942 AACTATGGTTTACGGCACTTTTTA 57.119 33.333 0.00 0.00 30.55 1.52
842 878 5.777850 AACTATGGTTTACGGCACTTTTT 57.222 34.783 0.00 0.00 30.55 1.94
843 879 5.533528 AGAAACTATGGTTTACGGCACTTTT 59.466 36.000 7.22 0.00 44.58 2.27
844 880 5.067954 AGAAACTATGGTTTACGGCACTTT 58.932 37.500 7.22 0.00 44.58 2.66
845 881 4.648651 AGAAACTATGGTTTACGGCACTT 58.351 39.130 7.22 0.00 44.58 3.16
846 882 4.281898 AGAAACTATGGTTTACGGCACT 57.718 40.909 7.22 0.00 44.58 4.40
847 883 5.366829 AAAGAAACTATGGTTTACGGCAC 57.633 39.130 7.22 0.00 44.58 5.01
848 884 7.608761 AGATAAAAGAAACTATGGTTTACGGCA 59.391 33.333 7.22 0.00 44.58 5.69
849 885 7.908601 CAGATAAAAGAAACTATGGTTTACGGC 59.091 37.037 7.22 0.00 44.58 5.68
850 886 8.943002 ACAGATAAAAGAAACTATGGTTTACGG 58.057 33.333 7.22 0.00 44.58 4.02
866 902 7.787480 GCAAAAACGTGCTTTAACAGATAAAAG 59.213 33.333 0.00 0.00 41.51 2.27
878 914 4.835344 CATTTGATGCAAAAACGTGCTTT 58.165 34.783 0.00 0.00 45.17 3.51
957 993 3.249189 TCTCCGCCCCTGCTTTGT 61.249 61.111 0.00 0.00 34.43 2.83
979 1015 0.665369 GTCGTACACAGGGTTGGTCG 60.665 60.000 0.00 0.00 0.00 4.79
1203 1246 2.531428 TGGGGGCAGTGGATGTCA 60.531 61.111 0.00 0.00 34.12 3.58
1218 1261 4.452733 GGGAAGGAGACGCGGTGG 62.453 72.222 12.47 0.00 0.00 4.61
1261 1304 2.314402 ATGAGGGCATGAGGAGCAA 58.686 52.632 0.00 0.00 32.31 3.91
1569 1612 4.841617 ATGCGGGAGAGCGAGGGA 62.842 66.667 0.00 0.00 40.67 4.20
1575 1618 0.394565 ATACCAAGATGCGGGAGAGC 59.605 55.000 0.00 0.00 37.71 4.09
2046 2089 3.097614 AGTGTAGTTCTCGTAGGCCAAT 58.902 45.455 5.01 0.00 0.00 3.16
2104 2147 0.811219 CCTTCGCGCAATCCATGAGA 60.811 55.000 8.75 0.00 0.00 3.27
2118 2161 3.311486 AGAACTGAAGAAGAGCCTTCG 57.689 47.619 8.66 0.00 44.06 3.79
2127 2170 2.880890 GCCTGCAAGAAGAACTGAAGAA 59.119 45.455 0.00 0.00 34.07 2.52
2128 2171 2.158769 TGCCTGCAAGAAGAACTGAAGA 60.159 45.455 0.00 0.00 34.07 2.87
2129 2172 2.224606 TGCCTGCAAGAAGAACTGAAG 58.775 47.619 0.00 0.00 34.07 3.02
2130 2173 2.158769 TCTGCCTGCAAGAAGAACTGAA 60.159 45.455 0.00 0.00 34.07 3.02
2131 2174 1.417517 TCTGCCTGCAAGAAGAACTGA 59.582 47.619 0.00 0.00 34.07 3.41
2132 2175 1.888215 TCTGCCTGCAAGAAGAACTG 58.112 50.000 0.00 0.00 34.07 3.16
2133 2176 2.818432 CAATCTGCCTGCAAGAAGAACT 59.182 45.455 0.00 0.00 34.07 3.01
2134 2177 2.670509 GCAATCTGCCTGCAAGAAGAAC 60.671 50.000 0.00 0.00 39.69 3.01
2170 2213 2.094675 TCGCTGATGATGACTCTGTGA 58.905 47.619 0.00 0.00 0.00 3.58
2173 2216 5.045872 TGTATTTCGCTGATGATGACTCTG 58.954 41.667 0.00 0.00 0.00 3.35
2293 2338 5.590530 ACAGAGACAAGGTATCATGAGAC 57.409 43.478 12.12 12.12 0.00 3.36
2443 2489 1.325355 GGCAATCATGATGGTCCTGG 58.675 55.000 9.46 0.00 0.00 4.45
2475 2521 1.145945 ACCCGAGAGAGCATCCAGATA 59.854 52.381 0.00 0.00 33.66 1.98
2481 2527 0.753479 TCCTCACCCGAGAGAGCATC 60.753 60.000 0.00 0.00 42.34 3.91
2495 2541 6.782494 TGTATTAAGGTATGAGCTCATCCTCA 59.218 38.462 31.07 24.62 45.16 3.86
2543 2589 4.296056 TCTTCCTCCCACTTATTAGGGTC 58.704 47.826 0.00 0.00 45.64 4.46
2565 2611 3.950397 TCCGGTGATGCTTTTACATCTT 58.050 40.909 0.00 0.00 45.51 2.40
2605 2651 9.551883 GTGGGATCACTTGCTTTGAAGCTAAAA 62.552 40.741 15.92 2.68 44.82 1.52
2610 2656 2.352127 GTGGGATCACTTGCTTTGAAGC 60.352 50.000 8.74 8.74 44.81 3.86
2618 2664 1.098050 GGTGATGTGGGATCACTTGC 58.902 55.000 13.10 0.00 45.60 4.01
2619 2665 2.362736 CAGGTGATGTGGGATCACTTG 58.637 52.381 13.10 12.11 45.20 3.16
2620 2666 1.988107 ACAGGTGATGTGGGATCACTT 59.012 47.619 13.10 4.50 45.60 3.16
2622 2668 2.086869 CAACAGGTGATGTGGGATCAC 58.913 52.381 6.29 6.29 43.00 3.06
2642 2689 9.893305 ATACGCTAATAATATTGAAAACCAAGC 57.107 29.630 0.00 0.00 38.31 4.01
2675 2722 5.836358 AGGCTAATAATATTCCCCGCAAAAA 59.164 36.000 0.00 0.00 0.00 1.94
2676 2723 5.390387 AGGCTAATAATATTCCCCGCAAAA 58.610 37.500 0.00 0.00 0.00 2.44
2677 2724 4.993028 AGGCTAATAATATTCCCCGCAAA 58.007 39.130 0.00 0.00 0.00 3.68
2681 2728 8.118976 TCGATATAGGCTAATAATATTCCCCG 57.881 38.462 0.00 0.00 0.00 5.73
2682 2729 9.091220 ACTCGATATAGGCTAATAATATTCCCC 57.909 37.037 0.00 0.00 0.00 4.81
2695 2742 9.647797 CGAATATCTATCTACTCGATATAGGCT 57.352 37.037 0.00 0.00 34.23 4.58
2696 2743 9.426837 ACGAATATCTATCTACTCGATATAGGC 57.573 37.037 0.00 0.00 34.23 3.93
2700 2747 9.483916 CCAGACGAATATCTATCTACTCGATAT 57.516 37.037 0.00 0.00 34.23 1.63
2701 2748 8.693625 TCCAGACGAATATCTATCTACTCGATA 58.306 37.037 0.00 0.00 33.48 2.92
2702 2749 7.493320 GTCCAGACGAATATCTATCTACTCGAT 59.507 40.741 0.00 0.00 36.11 3.59
2703 2750 6.812656 GTCCAGACGAATATCTATCTACTCGA 59.187 42.308 0.00 0.00 0.00 4.04
2704 2751 6.036300 GGTCCAGACGAATATCTATCTACTCG 59.964 46.154 0.00 0.00 0.00 4.18
2705 2752 7.065324 CAGGTCCAGACGAATATCTATCTACTC 59.935 44.444 0.00 0.00 0.00 2.59
2706 2753 6.882140 CAGGTCCAGACGAATATCTATCTACT 59.118 42.308 0.00 0.00 0.00 2.57
2707 2754 6.655848 ACAGGTCCAGACGAATATCTATCTAC 59.344 42.308 0.00 0.00 0.00 2.59
2708 2755 6.655425 CACAGGTCCAGACGAATATCTATCTA 59.345 42.308 0.00 0.00 0.00 1.98
2709 2756 5.475220 CACAGGTCCAGACGAATATCTATCT 59.525 44.000 0.00 0.00 0.00 1.98
2710 2757 5.473846 TCACAGGTCCAGACGAATATCTATC 59.526 44.000 0.00 0.00 0.00 2.08
2711 2758 5.241949 GTCACAGGTCCAGACGAATATCTAT 59.758 44.000 0.00 0.00 0.00 1.98
2712 2759 4.579340 GTCACAGGTCCAGACGAATATCTA 59.421 45.833 0.00 0.00 0.00 1.98
2713 2760 3.381908 GTCACAGGTCCAGACGAATATCT 59.618 47.826 0.00 0.00 0.00 1.98
2714 2761 3.707793 GTCACAGGTCCAGACGAATATC 58.292 50.000 0.00 0.00 0.00 1.63
2715 2762 3.802948 GTCACAGGTCCAGACGAATAT 57.197 47.619 0.00 0.00 0.00 1.28
2721 2768 2.048127 GCCGTCACAGGTCCAGAC 60.048 66.667 0.00 0.00 0.00 3.51
2728 2775 1.079127 CTAACCAGGCCGTCACAGG 60.079 63.158 0.00 0.00 0.00 4.00
2736 2783 0.615850 AGAACTGAGCTAACCAGGCC 59.384 55.000 0.00 0.00 36.03 5.19
2737 2784 1.552792 AGAGAACTGAGCTAACCAGGC 59.447 52.381 5.94 0.00 36.03 4.85
2741 2788 2.751166 TGCAGAGAACTGAGCTAACC 57.249 50.000 0.00 0.00 46.03 2.85
2743 2790 2.899900 TCCTTGCAGAGAACTGAGCTAA 59.100 45.455 0.00 0.00 46.03 3.09
2750 2797 4.156455 TGAGTTTTCCTTGCAGAGAACT 57.844 40.909 10.52 10.52 42.20 3.01
2806 2853 2.296190 GCTCGGTTTCCCTTCAACAAAT 59.704 45.455 0.00 0.00 0.00 2.32
2818 2865 1.005294 TCGCTGTTACGCTCGGTTTC 61.005 55.000 0.00 0.00 0.00 2.78
2820 2867 0.598158 TTTCGCTGTTACGCTCGGTT 60.598 50.000 0.00 0.00 0.00 4.44
2836 2883 1.583477 GCCTCTGCAGCCACTTTTC 59.417 57.895 9.47 0.00 37.47 2.29
2837 2884 3.769201 GCCTCTGCAGCCACTTTT 58.231 55.556 9.47 0.00 37.47 2.27
2845 2892 4.527583 GGAGCTCGGCCTCTGCAG 62.528 72.222 7.63 7.63 40.13 4.41
2847 2894 3.397613 AATGGAGCTCGGCCTCTGC 62.398 63.158 7.83 1.79 32.43 4.26
2848 2895 1.523258 CAATGGAGCTCGGCCTCTG 60.523 63.158 7.83 0.00 32.43 3.35
2849 2896 1.684386 CTCAATGGAGCTCGGCCTCT 61.684 60.000 7.83 0.00 33.67 3.69
2850 2897 1.227497 CTCAATGGAGCTCGGCCTC 60.227 63.158 7.83 0.00 33.67 4.70
2851 2898 2.906458 CTCAATGGAGCTCGGCCT 59.094 61.111 7.83 0.00 33.67 5.19
2859 2906 9.149225 GAGAAATGTATATAGTGCTCAATGGAG 57.851 37.037 0.40 0.00 44.33 3.86
2860 2907 8.650490 TGAGAAATGTATATAGTGCTCAATGGA 58.350 33.333 5.24 0.00 0.00 3.41
2861 2908 8.837788 TGAGAAATGTATATAGTGCTCAATGG 57.162 34.615 5.24 0.00 0.00 3.16
2862 2909 8.441608 GCTGAGAAATGTATATAGTGCTCAATG 58.558 37.037 8.71 0.72 31.59 2.82
2863 2910 7.605691 GGCTGAGAAATGTATATAGTGCTCAAT 59.394 37.037 8.71 0.00 31.59 2.57
2864 2911 6.931281 GGCTGAGAAATGTATATAGTGCTCAA 59.069 38.462 8.71 0.00 31.59 3.02
2865 2912 6.041979 TGGCTGAGAAATGTATATAGTGCTCA 59.958 38.462 7.33 7.33 0.00 4.26
2866 2913 6.459066 TGGCTGAGAAATGTATATAGTGCTC 58.541 40.000 0.00 0.00 0.00 4.26
2867 2914 6.425210 TGGCTGAGAAATGTATATAGTGCT 57.575 37.500 0.00 0.00 0.00 4.40
2868 2915 7.496529 TTTGGCTGAGAAATGTATATAGTGC 57.503 36.000 0.00 0.00 0.00 4.40
2873 2920 9.646522 AAGGTATTTTGGCTGAGAAATGTATAT 57.353 29.630 0.00 0.00 0.00 0.86
2874 2921 9.474313 AAAGGTATTTTGGCTGAGAAATGTATA 57.526 29.630 0.00 0.00 0.00 1.47
2875 2922 7.961326 AAGGTATTTTGGCTGAGAAATGTAT 57.039 32.000 0.00 0.00 0.00 2.29
2876 2923 7.775053 AAAGGTATTTTGGCTGAGAAATGTA 57.225 32.000 0.00 0.00 0.00 2.29
2877 2924 6.670695 AAAGGTATTTTGGCTGAGAAATGT 57.329 33.333 0.00 0.00 0.00 2.71
2878 2925 6.591448 GGAAAAGGTATTTTGGCTGAGAAATG 59.409 38.462 0.00 0.00 38.74 2.32
2879 2926 6.269769 TGGAAAAGGTATTTTGGCTGAGAAAT 59.730 34.615 0.00 0.00 38.74 2.17
2880 2927 5.600484 TGGAAAAGGTATTTTGGCTGAGAAA 59.400 36.000 0.00 0.00 38.74 2.52
2881 2928 5.144100 TGGAAAAGGTATTTTGGCTGAGAA 58.856 37.500 0.00 0.00 38.74 2.87
2882 2929 4.735369 TGGAAAAGGTATTTTGGCTGAGA 58.265 39.130 0.00 0.00 38.74 3.27
2883 2930 5.665916 ATGGAAAAGGTATTTTGGCTGAG 57.334 39.130 0.00 0.00 38.74 3.35
2884 2931 6.723977 AGTTATGGAAAAGGTATTTTGGCTGA 59.276 34.615 0.00 0.00 38.74 4.26
2885 2932 6.935167 AGTTATGGAAAAGGTATTTTGGCTG 58.065 36.000 0.00 0.00 38.74 4.85
2886 2933 6.723977 TGAGTTATGGAAAAGGTATTTTGGCT 59.276 34.615 0.00 0.00 38.74 4.75
2887 2934 6.930731 TGAGTTATGGAAAAGGTATTTTGGC 58.069 36.000 0.00 0.00 38.74 4.52
2888 2935 9.771534 TTTTGAGTTATGGAAAAGGTATTTTGG 57.228 29.630 0.00 0.00 38.74 3.28
3009 3056 8.462016 GCCTATTTCAATCTGTGTATTTGTCTT 58.538 33.333 0.00 0.00 0.00 3.01
3010 3057 7.831193 AGCCTATTTCAATCTGTGTATTTGTCT 59.169 33.333 0.00 0.00 0.00 3.41
3011 3058 7.989826 AGCCTATTTCAATCTGTGTATTTGTC 58.010 34.615 0.00 0.00 0.00 3.18
3012 3059 7.944729 AGCCTATTTCAATCTGTGTATTTGT 57.055 32.000 0.00 0.00 0.00 2.83
3013 3060 9.643693 AAAAGCCTATTTCAATCTGTGTATTTG 57.356 29.630 0.00 0.00 0.00 2.32
3015 3062 9.860898 GAAAAAGCCTATTTCAATCTGTGTATT 57.139 29.630 2.58 0.00 36.89 1.89
3016 3063 9.247861 AGAAAAAGCCTATTTCAATCTGTGTAT 57.752 29.630 8.59 0.00 38.86 2.29
3017 3064 8.635765 AGAAAAAGCCTATTTCAATCTGTGTA 57.364 30.769 8.59 0.00 38.86 2.90
3018 3065 7.530426 AGAAAAAGCCTATTTCAATCTGTGT 57.470 32.000 8.59 0.00 38.86 3.72
3019 3066 8.706035 CAAAGAAAAAGCCTATTTCAATCTGTG 58.294 33.333 8.59 0.00 38.86 3.66
3020 3067 8.424133 ACAAAGAAAAAGCCTATTTCAATCTGT 58.576 29.630 8.59 4.29 38.86 3.41
3021 3068 8.822652 ACAAAGAAAAAGCCTATTTCAATCTG 57.177 30.769 8.59 3.84 38.86 2.90
3022 3069 9.264719 CAACAAAGAAAAAGCCTATTTCAATCT 57.735 29.630 8.59 0.00 38.86 2.40
3023 3070 9.045223 ACAACAAAGAAAAAGCCTATTTCAATC 57.955 29.630 8.59 0.00 38.86 2.67
3024 3071 8.962884 ACAACAAAGAAAAAGCCTATTTCAAT 57.037 26.923 8.59 0.00 38.86 2.57
3029 3076 9.830975 ACAAATACAACAAAGAAAAAGCCTATT 57.169 25.926 0.00 0.00 0.00 1.73
3030 3077 9.260002 CACAAATACAACAAAGAAAAAGCCTAT 57.740 29.630 0.00 0.00 0.00 2.57
3031 3078 8.254508 ACACAAATACAACAAAGAAAAAGCCTA 58.745 29.630 0.00 0.00 0.00 3.93
3032 3079 7.102993 ACACAAATACAACAAAGAAAAAGCCT 58.897 30.769 0.00 0.00 0.00 4.58
3033 3080 7.064016 TGACACAAATACAACAAAGAAAAAGCC 59.936 33.333 0.00 0.00 0.00 4.35
3034 3081 7.958674 TGACACAAATACAACAAAGAAAAAGC 58.041 30.769 0.00 0.00 0.00 3.51
3035 3082 9.352784 TCTGACACAAATACAACAAAGAAAAAG 57.647 29.630 0.00 0.00 0.00 2.27
3036 3083 9.868277 ATCTGACACAAATACAACAAAGAAAAA 57.132 25.926 0.00 0.00 0.00 1.94
3071 3118 6.221659 TGATCATTTGCATGCTACACAAAAA 58.778 32.000 20.33 9.35 36.90 1.94
3072 3119 5.780984 TGATCATTTGCATGCTACACAAAA 58.219 33.333 20.33 10.10 36.90 2.44
3073 3120 5.388408 TGATCATTTGCATGCTACACAAA 57.612 34.783 20.33 10.86 37.66 2.83
3074 3121 5.388408 TTGATCATTTGCATGCTACACAA 57.612 34.783 20.33 12.42 0.00 3.33
3075 3122 5.388408 TTTGATCATTTGCATGCTACACA 57.612 34.783 20.33 7.23 0.00 3.72
3076 3123 6.897259 AATTTGATCATTTGCATGCTACAC 57.103 33.333 20.33 4.74 0.00 2.90
3077 3124 7.774134 ACTAATTTGATCATTTGCATGCTACA 58.226 30.769 20.33 2.10 0.00 2.74
3078 3125 8.638685 AACTAATTTGATCATTTGCATGCTAC 57.361 30.769 20.33 0.00 0.00 3.58
3079 3126 9.734620 GTAACTAATTTGATCATTTGCATGCTA 57.265 29.630 20.33 8.83 0.00 3.49
3080 3127 8.472413 AGTAACTAATTTGATCATTTGCATGCT 58.528 29.630 20.33 0.00 0.00 3.79
3081 3128 8.537223 CAGTAACTAATTTGATCATTTGCATGC 58.463 33.333 11.82 11.82 0.00 4.06
3082 3129 9.791820 TCAGTAACTAATTTGATCATTTGCATG 57.208 29.630 0.00 0.00 0.00 4.06
3196 3243 2.949451 TGGAGCTCGTTTTGCAAAAA 57.051 40.000 25.40 10.89 0.00 1.94
3197 3244 2.545532 CCATGGAGCTCGTTTTGCAAAA 60.546 45.455 20.46 20.46 0.00 2.44
3198 3245 1.000385 CCATGGAGCTCGTTTTGCAAA 60.000 47.619 5.56 8.05 0.00 3.68
3199 3246 0.597568 CCATGGAGCTCGTTTTGCAA 59.402 50.000 5.56 0.00 0.00 4.08
3200 3247 0.250684 TCCATGGAGCTCGTTTTGCA 60.251 50.000 11.44 0.00 0.00 4.08
3201 3248 0.449388 CTCCATGGAGCTCGTTTTGC 59.551 55.000 28.45 0.00 35.31 3.68
3211 3258 1.915078 AAAGACCGGGCTCCATGGAG 61.915 60.000 33.73 33.73 44.56 3.86
3212 3259 1.923395 AAAGACCGGGCTCCATGGA 60.923 57.895 12.33 15.27 0.00 3.41
3213 3260 1.750399 CAAAGACCGGGCTCCATGG 60.750 63.158 12.33 4.97 0.00 3.66
3214 3261 2.409870 GCAAAGACCGGGCTCCATG 61.410 63.158 12.33 12.25 0.00 3.66
3215 3262 2.044946 GCAAAGACCGGGCTCCAT 60.045 61.111 12.33 0.00 0.00 3.41
3216 3263 3.126703 TTGCAAAGACCGGGCTCCA 62.127 57.895 12.33 5.56 0.00 3.86
3217 3264 2.282180 TTGCAAAGACCGGGCTCC 60.282 61.111 12.33 2.23 0.00 4.70
3218 3265 2.954611 GTTGCAAAGACCGGGCTC 59.045 61.111 12.33 0.00 0.00 4.70
3219 3266 2.978010 CGTTGCAAAGACCGGGCT 60.978 61.111 2.12 2.12 0.00 5.19
3220 3267 4.700365 GCGTTGCAAAGACCGGGC 62.700 66.667 16.93 0.52 0.00 6.13
3221 3268 4.038080 GGCGTTGCAAAGACCGGG 62.038 66.667 16.93 0.00 0.00 5.73
3222 3269 3.283684 TGGCGTTGCAAAGACCGG 61.284 61.111 15.96 0.00 0.00 5.28
3223 3270 2.051345 GTGGCGTTGCAAAGACCG 60.051 61.111 15.96 9.23 0.00 4.79
3224 3271 1.299089 GTGTGGCGTTGCAAAGACC 60.299 57.895 15.96 15.53 0.00 3.85
3225 3272 0.317020 GAGTGTGGCGTTGCAAAGAC 60.317 55.000 16.93 14.38 0.00 3.01
3226 3273 0.746204 TGAGTGTGGCGTTGCAAAGA 60.746 50.000 16.93 0.00 0.00 2.52
3227 3274 0.317269 CTGAGTGTGGCGTTGCAAAG 60.317 55.000 8.11 8.11 0.00 2.77
3228 3275 1.726865 CTGAGTGTGGCGTTGCAAA 59.273 52.632 0.00 0.00 0.00 3.68
3229 3276 2.833533 GCTGAGTGTGGCGTTGCAA 61.834 57.895 0.00 0.00 0.00 4.08
3230 3277 3.279116 GCTGAGTGTGGCGTTGCA 61.279 61.111 0.00 0.00 0.00 4.08
3231 3278 4.374702 CGCTGAGTGTGGCGTTGC 62.375 66.667 0.00 0.00 45.34 4.17
3236 3283 1.901650 GCTGTTACGCTGAGTGTGGC 61.902 60.000 9.23 4.43 0.00 5.01
3237 3284 0.319900 AGCTGTTACGCTGAGTGTGG 60.320 55.000 9.23 0.00 39.16 4.17
3238 3285 1.063806 GAGCTGTTACGCTGAGTGTG 58.936 55.000 9.23 0.00 41.08 3.82
3239 3286 0.038159 GGAGCTGTTACGCTGAGTGT 60.038 55.000 3.41 3.41 41.08 3.55
3240 3287 0.038251 TGGAGCTGTTACGCTGAGTG 60.038 55.000 6.45 0.00 41.08 3.51
3241 3288 0.898320 ATGGAGCTGTTACGCTGAGT 59.102 50.000 6.45 0.00 41.08 3.41
3242 3289 1.134995 TCATGGAGCTGTTACGCTGAG 60.135 52.381 6.45 0.00 41.08 3.35
3243 3290 0.894835 TCATGGAGCTGTTACGCTGA 59.105 50.000 6.45 0.00 41.08 4.26
3244 3291 1.284657 CTCATGGAGCTGTTACGCTG 58.715 55.000 6.45 0.00 41.08 5.18
3245 3292 0.898320 ACTCATGGAGCTGTTACGCT 59.102 50.000 0.00 1.81 44.33 5.07
3246 3293 1.002366 CACTCATGGAGCTGTTACGC 58.998 55.000 0.00 0.00 32.04 4.42
3247 3294 1.002366 GCACTCATGGAGCTGTTACG 58.998 55.000 0.00 0.00 32.04 3.18
3248 3295 1.339055 TGGCACTCATGGAGCTGTTAC 60.339 52.381 0.00 0.00 32.04 2.50
3249 3296 0.983467 TGGCACTCATGGAGCTGTTA 59.017 50.000 0.00 0.00 32.04 2.41
3250 3297 0.330604 ATGGCACTCATGGAGCTGTT 59.669 50.000 0.00 0.00 34.22 3.16
3251 3298 1.206878 TATGGCACTCATGGAGCTGT 58.793 50.000 0.00 0.00 37.30 4.40
3252 3299 2.336945 TTATGGCACTCATGGAGCTG 57.663 50.000 0.00 0.00 37.30 4.24
3253 3300 2.507058 TCTTTATGGCACTCATGGAGCT 59.493 45.455 0.00 0.00 37.30 4.09
3254 3301 2.877168 CTCTTTATGGCACTCATGGAGC 59.123 50.000 0.00 0.00 37.30 4.70
3255 3302 2.877168 GCTCTTTATGGCACTCATGGAG 59.123 50.000 0.00 0.00 37.30 3.86
3256 3303 2.507058 AGCTCTTTATGGCACTCATGGA 59.493 45.455 0.00 0.00 37.30 3.41
3257 3304 2.928334 AGCTCTTTATGGCACTCATGG 58.072 47.619 0.00 0.00 37.30 3.66
3258 3305 5.363101 TCTAAGCTCTTTATGGCACTCATG 58.637 41.667 0.00 0.00 37.30 3.07
3259 3306 5.620738 TCTAAGCTCTTTATGGCACTCAT 57.379 39.130 0.00 0.00 39.78 2.90
3260 3307 5.420725 TTCTAAGCTCTTTATGGCACTCA 57.579 39.130 0.00 0.00 0.00 3.41
3261 3308 5.819901 ACATTCTAAGCTCTTTATGGCACTC 59.180 40.000 0.00 0.00 0.00 3.51
3262 3309 5.587844 CACATTCTAAGCTCTTTATGGCACT 59.412 40.000 0.00 0.00 0.00 4.40
3263 3310 5.355350 ACACATTCTAAGCTCTTTATGGCAC 59.645 40.000 0.00 0.00 0.00 5.01
3264 3311 5.500234 ACACATTCTAAGCTCTTTATGGCA 58.500 37.500 0.00 0.00 0.00 4.92
3265 3312 5.819901 AGACACATTCTAAGCTCTTTATGGC 59.180 40.000 0.00 0.00 30.17 4.40
3266 3313 7.335422 ACAAGACACATTCTAAGCTCTTTATGG 59.665 37.037 0.00 0.00 32.51 2.74
3267 3314 8.261492 ACAAGACACATTCTAAGCTCTTTATG 57.739 34.615 0.00 0.00 32.51 1.90
3268 3315 8.317679 AGACAAGACACATTCTAAGCTCTTTAT 58.682 33.333 0.00 0.00 32.51 1.40
3269 3316 7.671302 AGACAAGACACATTCTAAGCTCTTTA 58.329 34.615 0.00 0.00 32.51 1.85
3270 3317 6.529220 AGACAAGACACATTCTAAGCTCTTT 58.471 36.000 0.00 0.00 32.51 2.52
3271 3318 6.107901 AGACAAGACACATTCTAAGCTCTT 57.892 37.500 0.00 0.00 32.51 2.85
3272 3319 5.736951 AGACAAGACACATTCTAAGCTCT 57.263 39.130 0.00 0.00 32.51 4.09
3273 3320 9.757227 AATATAGACAAGACACATTCTAAGCTC 57.243 33.333 0.00 0.00 32.51 4.09
3274 3321 9.539825 CAATATAGACAAGACACATTCTAAGCT 57.460 33.333 0.00 0.00 32.51 3.74
3275 3322 9.534565 TCAATATAGACAAGACACATTCTAAGC 57.465 33.333 0.00 0.00 32.51 3.09
3279 3326 9.334947 CCATTCAATATAGACAAGACACATTCT 57.665 33.333 0.00 0.00 35.32 2.40
3280 3327 8.072567 GCCATTCAATATAGACAAGACACATTC 58.927 37.037 0.00 0.00 0.00 2.67
3281 3328 7.557358 TGCCATTCAATATAGACAAGACACATT 59.443 33.333 0.00 0.00 0.00 2.71
3282 3329 7.056006 TGCCATTCAATATAGACAAGACACAT 58.944 34.615 0.00 0.00 0.00 3.21
3283 3330 6.413892 TGCCATTCAATATAGACAAGACACA 58.586 36.000 0.00 0.00 0.00 3.72
3284 3331 6.925610 TGCCATTCAATATAGACAAGACAC 57.074 37.500 0.00 0.00 0.00 3.67
3285 3332 8.523915 AAATGCCATTCAATATAGACAAGACA 57.476 30.769 0.00 0.00 0.00 3.41
3286 3333 9.241317 CAAAATGCCATTCAATATAGACAAGAC 57.759 33.333 0.00 0.00 0.00 3.01
3287 3334 8.415553 CCAAAATGCCATTCAATATAGACAAGA 58.584 33.333 0.00 0.00 0.00 3.02
3288 3335 7.654520 CCCAAAATGCCATTCAATATAGACAAG 59.345 37.037 0.00 0.00 0.00 3.16
3289 3336 7.418827 CCCCAAAATGCCATTCAATATAGACAA 60.419 37.037 0.00 0.00 0.00 3.18
3290 3337 6.041865 CCCCAAAATGCCATTCAATATAGACA 59.958 38.462 0.00 0.00 0.00 3.41
3291 3338 6.458210 CCCCAAAATGCCATTCAATATAGAC 58.542 40.000 0.00 0.00 0.00 2.59
3292 3339 5.011943 GCCCCAAAATGCCATTCAATATAGA 59.988 40.000 0.00 0.00 0.00 1.98
3293 3340 5.012354 AGCCCCAAAATGCCATTCAATATAG 59.988 40.000 0.00 0.00 0.00 1.31
3294 3341 4.906664 AGCCCCAAAATGCCATTCAATATA 59.093 37.500 0.00 0.00 0.00 0.86
3295 3342 3.717913 AGCCCCAAAATGCCATTCAATAT 59.282 39.130 0.00 0.00 0.00 1.28
3296 3343 3.113824 AGCCCCAAAATGCCATTCAATA 58.886 40.909 0.00 0.00 0.00 1.90
3297 3344 1.917568 AGCCCCAAAATGCCATTCAAT 59.082 42.857 0.00 0.00 0.00 2.57
3298 3345 1.360185 AGCCCCAAAATGCCATTCAA 58.640 45.000 0.00 0.00 0.00 2.69
3299 3346 2.244486 TAGCCCCAAAATGCCATTCA 57.756 45.000 0.00 0.00 0.00 2.57
3300 3347 2.765699 TCTTAGCCCCAAAATGCCATTC 59.234 45.455 0.00 0.00 0.00 2.67
3301 3348 2.831565 TCTTAGCCCCAAAATGCCATT 58.168 42.857 0.00 0.00 0.00 3.16
3302 3349 2.548464 TCTTAGCCCCAAAATGCCAT 57.452 45.000 0.00 0.00 0.00 4.40
3303 3350 2.548464 ATCTTAGCCCCAAAATGCCA 57.452 45.000 0.00 0.00 0.00 4.92
3304 3351 5.070313 TGATTTATCTTAGCCCCAAAATGCC 59.930 40.000 0.00 0.00 0.00 4.40
3305 3352 6.160576 TGATTTATCTTAGCCCCAAAATGC 57.839 37.500 0.00 0.00 0.00 3.56
3306 3353 7.954835 TCATGATTTATCTTAGCCCCAAAATG 58.045 34.615 0.00 0.00 0.00 2.32
3307 3354 7.234166 CCTCATGATTTATCTTAGCCCCAAAAT 59.766 37.037 0.00 0.00 0.00 1.82
3308 3355 6.550854 CCTCATGATTTATCTTAGCCCCAAAA 59.449 38.462 0.00 0.00 0.00 2.44
3309 3356 6.070656 CCTCATGATTTATCTTAGCCCCAAA 58.929 40.000 0.00 0.00 0.00 3.28
3310 3357 5.372363 TCCTCATGATTTATCTTAGCCCCAA 59.628 40.000 0.00 0.00 0.00 4.12
3311 3358 4.913355 TCCTCATGATTTATCTTAGCCCCA 59.087 41.667 0.00 0.00 0.00 4.96
3312 3359 5.221925 TGTCCTCATGATTTATCTTAGCCCC 60.222 44.000 0.00 0.00 0.00 5.80
3313 3360 5.869579 TGTCCTCATGATTTATCTTAGCCC 58.130 41.667 0.00 0.00 0.00 5.19
3314 3361 7.663081 TGAATGTCCTCATGATTTATCTTAGCC 59.337 37.037 0.00 0.00 34.19 3.93
3315 3362 8.613060 TGAATGTCCTCATGATTTATCTTAGC 57.387 34.615 0.00 0.00 34.19 3.09
3328 3375 2.029623 GCAAGCCATGAATGTCCTCAT 58.970 47.619 0.00 0.00 36.45 2.90
3329 3376 1.005097 AGCAAGCCATGAATGTCCTCA 59.995 47.619 0.00 0.00 0.00 3.86
3330 3377 1.404391 CAGCAAGCCATGAATGTCCTC 59.596 52.381 0.00 0.00 0.00 3.71
3331 3378 1.272313 ACAGCAAGCCATGAATGTCCT 60.272 47.619 0.00 0.00 0.00 3.85
3332 3379 1.180029 ACAGCAAGCCATGAATGTCC 58.820 50.000 0.00 0.00 0.00 4.02
3333 3380 4.644103 ATTACAGCAAGCCATGAATGTC 57.356 40.909 0.00 0.00 33.88 3.06
3334 3381 4.949238 TGTATTACAGCAAGCCATGAATGT 59.051 37.500 0.00 0.00 35.46 2.71
3335 3382 5.503662 TGTATTACAGCAAGCCATGAATG 57.496 39.130 0.00 0.00 0.00 2.67
3336 3383 6.528537 TTTGTATTACAGCAAGCCATGAAT 57.471 33.333 0.00 0.00 0.00 2.57
3337 3384 5.973899 TTTGTATTACAGCAAGCCATGAA 57.026 34.783 0.00 0.00 0.00 2.57
3338 3385 5.973899 TTTTGTATTACAGCAAGCCATGA 57.026 34.783 0.00 0.00 0.00 3.07
3339 3386 6.331845 TGATTTTGTATTACAGCAAGCCATG 58.668 36.000 0.00 0.00 0.00 3.66
3340 3387 6.528537 TGATTTTGTATTACAGCAAGCCAT 57.471 33.333 0.00 0.00 0.00 4.40
3341 3388 5.973899 TGATTTTGTATTACAGCAAGCCA 57.026 34.783 0.00 0.00 0.00 4.75
3342 3389 6.254157 CACATGATTTTGTATTACAGCAAGCC 59.746 38.462 0.00 0.00 0.00 4.35
3343 3390 6.237648 GCACATGATTTTGTATTACAGCAAGC 60.238 38.462 0.00 0.00 0.00 4.01
3344 3391 7.031372 AGCACATGATTTTGTATTACAGCAAG 58.969 34.615 0.00 0.00 0.00 4.01
3345 3392 6.923012 AGCACATGATTTTGTATTACAGCAA 58.077 32.000 0.00 0.00 0.00 3.91
3346 3393 6.375174 AGAGCACATGATTTTGTATTACAGCA 59.625 34.615 0.00 0.00 0.00 4.41
3347 3394 6.690098 CAGAGCACATGATTTTGTATTACAGC 59.310 38.462 0.00 0.00 0.00 4.40
3348 3395 7.907045 GTCAGAGCACATGATTTTGTATTACAG 59.093 37.037 0.00 0.00 0.00 2.74
3349 3396 7.390162 TGTCAGAGCACATGATTTTGTATTACA 59.610 33.333 0.00 0.00 0.00 2.41
3350 3397 7.751732 TGTCAGAGCACATGATTTTGTATTAC 58.248 34.615 0.00 0.00 0.00 1.89
3351 3398 7.823799 TCTGTCAGAGCACATGATTTTGTATTA 59.176 33.333 0.00 0.00 0.00 0.98
3352 3399 6.656270 TCTGTCAGAGCACATGATTTTGTATT 59.344 34.615 0.00 0.00 0.00 1.89
3353 3400 6.175471 TCTGTCAGAGCACATGATTTTGTAT 58.825 36.000 0.00 0.00 0.00 2.29
3354 3401 5.550290 TCTGTCAGAGCACATGATTTTGTA 58.450 37.500 0.00 0.00 0.00 2.41
3355 3402 4.392047 TCTGTCAGAGCACATGATTTTGT 58.608 39.130 0.00 0.00 0.00 2.83
3356 3403 5.562506 ATCTGTCAGAGCACATGATTTTG 57.437 39.130 8.82 0.00 0.00 2.44
3357 3404 7.876936 AATATCTGTCAGAGCACATGATTTT 57.123 32.000 8.82 0.00 0.00 1.82
3358 3405 9.000486 CATAATATCTGTCAGAGCACATGATTT 58.000 33.333 8.82 0.00 0.00 2.17
3359 3406 7.119407 GCATAATATCTGTCAGAGCACATGATT 59.881 37.037 8.82 2.57 0.00 2.57
3360 3407 6.594547 GCATAATATCTGTCAGAGCACATGAT 59.405 38.462 8.82 0.00 0.00 2.45
3361 3408 5.930569 GCATAATATCTGTCAGAGCACATGA 59.069 40.000 8.82 0.00 0.00 3.07
3362 3409 5.932883 AGCATAATATCTGTCAGAGCACATG 59.067 40.000 8.82 9.96 0.00 3.21
3363 3410 6.111669 AGCATAATATCTGTCAGAGCACAT 57.888 37.500 8.82 0.00 0.00 3.21
3364 3411 5.541953 AGCATAATATCTGTCAGAGCACA 57.458 39.130 8.82 0.00 0.00 4.57
3365 3412 5.407995 GGAAGCATAATATCTGTCAGAGCAC 59.592 44.000 8.82 4.07 0.00 4.40
3366 3413 5.306419 AGGAAGCATAATATCTGTCAGAGCA 59.694 40.000 8.82 0.00 0.00 4.26
3367 3414 5.792741 AGGAAGCATAATATCTGTCAGAGC 58.207 41.667 8.82 5.13 0.00 4.09
3368 3415 7.384660 GTGAAGGAAGCATAATATCTGTCAGAG 59.615 40.741 8.82 0.00 0.00 3.35
3369 3416 7.070447 AGTGAAGGAAGCATAATATCTGTCAGA 59.930 37.037 4.68 4.68 0.00 3.27
3370 3417 7.215789 AGTGAAGGAAGCATAATATCTGTCAG 58.784 38.462 0.00 0.00 0.00 3.51
3371 3418 7.129457 AGTGAAGGAAGCATAATATCTGTCA 57.871 36.000 0.00 0.00 0.00 3.58
3372 3419 9.717942 ATAAGTGAAGGAAGCATAATATCTGTC 57.282 33.333 0.00 0.00 0.00 3.51
3373 3420 9.717942 GATAAGTGAAGGAAGCATAATATCTGT 57.282 33.333 0.00 0.00 0.00 3.41
3374 3421 9.941325 AGATAAGTGAAGGAAGCATAATATCTG 57.059 33.333 0.00 0.00 0.00 2.90
3376 3423 9.935241 TGAGATAAGTGAAGGAAGCATAATATC 57.065 33.333 0.00 0.00 0.00 1.63
3378 3425 9.716531 CATGAGATAAGTGAAGGAAGCATAATA 57.283 33.333 0.00 0.00 0.00 0.98
3379 3426 8.618702 CATGAGATAAGTGAAGGAAGCATAAT 57.381 34.615 0.00 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.