Multiple sequence alignment - TraesCS1D01G191500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G191500 chr1D 100.000 2741 0 0 1 2741 267340164 267342904 0.000000e+00 5062
1 TraesCS1D01G191500 chr1D 90.000 630 56 7 1 626 359835949 359835323 0.000000e+00 808
2 TraesCS1D01G191500 chr1B 96.720 1372 32 3 715 2076 346403627 346402259 0.000000e+00 2272
3 TraesCS1D01G191500 chr1B 89.235 353 24 8 2370 2720 346402260 346401920 1.950000e-116 429
4 TraesCS1D01G191500 chr1A 96.447 1323 36 4 764 2076 336214808 336213487 0.000000e+00 2172
5 TraesCS1D01G191500 chr1A 93.158 190 12 1 2370 2559 336213488 336213300 7.480000e-71 278
6 TraesCS1D01G191500 chr1A 85.308 211 16 9 2537 2741 336213287 336213086 1.290000e-48 204
7 TraesCS1D01G191500 chr7D 89.348 629 52 3 1 629 202411111 202410498 0.000000e+00 776
8 TraesCS1D01G191500 chr2A 87.338 616 69 6 1 610 213116966 213116354 0.000000e+00 697
9 TraesCS1D01G191500 chr3A 86.560 625 78 5 1 622 656299848 656299227 0.000000e+00 684
10 TraesCS1D01G191500 chr3A 86.603 627 75 6 1 622 656384208 656383586 0.000000e+00 684
11 TraesCS1D01G191500 chr7A 85.875 623 72 16 1 614 177241149 177240534 0.000000e+00 649
12 TraesCS1D01G191500 chr5D 84.873 628 88 5 1 625 54208493 54207870 6.440000e-176 627
13 TraesCS1D01G191500 chr5D 84.144 637 90 9 1 633 296630994 296630365 8.390000e-170 606
14 TraesCS1D01G191500 chr6D 84.567 635 81 16 1 626 420519857 420519231 5.020000e-172 614
15 TraesCS1D01G191500 chr4D 91.973 299 16 1 2073 2371 395080976 395080686 1.960000e-111 412
16 TraesCS1D01G191500 chr5B 90.034 291 20 7 2073 2359 132394779 132394494 4.310000e-98 368
17 TraesCS1D01G191500 chr3B 90.034 291 19 8 2073 2359 144944818 144945102 4.310000e-98 368
18 TraesCS1D01G191500 chr3B 89.347 291 21 8 2073 2359 295124363 295124647 9.330000e-95 357
19 TraesCS1D01G191500 chr4A 88.926 298 28 2 2075 2371 82255235 82254942 2.010000e-96 363
20 TraesCS1D01G191500 chrUn 89.347 291 21 8 2073 2359 178862069 178862353 9.330000e-95 357
21 TraesCS1D01G191500 chr7B 89.347 291 21 7 2073 2359 697218762 697219046 9.330000e-95 357
22 TraesCS1D01G191500 chr2B 89.347 291 21 8 2073 2359 775627615 775627899 9.330000e-95 357
23 TraesCS1D01G191500 chr2B 89.347 291 21 8 2073 2359 775700141 775700425 9.330000e-95 357


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G191500 chr1D 267340164 267342904 2740 False 5062.000000 5062 100.000000 1 2741 1 chr1D.!!$F1 2740
1 TraesCS1D01G191500 chr1D 359835323 359835949 626 True 808.000000 808 90.000000 1 626 1 chr1D.!!$R1 625
2 TraesCS1D01G191500 chr1B 346401920 346403627 1707 True 1350.500000 2272 92.977500 715 2720 2 chr1B.!!$R1 2005
3 TraesCS1D01G191500 chr1A 336213086 336214808 1722 True 884.666667 2172 91.637667 764 2741 3 chr1A.!!$R1 1977
4 TraesCS1D01G191500 chr7D 202410498 202411111 613 True 776.000000 776 89.348000 1 629 1 chr7D.!!$R1 628
5 TraesCS1D01G191500 chr2A 213116354 213116966 612 True 697.000000 697 87.338000 1 610 1 chr2A.!!$R1 609
6 TraesCS1D01G191500 chr3A 656299227 656299848 621 True 684.000000 684 86.560000 1 622 1 chr3A.!!$R1 621
7 TraesCS1D01G191500 chr3A 656383586 656384208 622 True 684.000000 684 86.603000 1 622 1 chr3A.!!$R2 621
8 TraesCS1D01G191500 chr7A 177240534 177241149 615 True 649.000000 649 85.875000 1 614 1 chr7A.!!$R1 613
9 TraesCS1D01G191500 chr5D 54207870 54208493 623 True 627.000000 627 84.873000 1 625 1 chr5D.!!$R1 624
10 TraesCS1D01G191500 chr5D 296630365 296630994 629 True 606.000000 606 84.144000 1 633 1 chr5D.!!$R2 632
11 TraesCS1D01G191500 chr6D 420519231 420519857 626 True 614.000000 614 84.567000 1 626 1 chr6D.!!$R1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
573 586 0.183492 GGATGCTGCCTATTGGTGGA 59.817 55.0 0.0 0.0 35.27 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2098 2131 0.034896 ATATTCCTTACAGCCCGCGG 59.965 55.0 21.04 21.04 0.0 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 172 5.009110 CAGTGAGCTCCGTGATATTCTCTTA 59.991 44.000 12.15 0.00 0.00 2.10
287 288 2.447047 ACAAATTCCCTTCTCACCCTGT 59.553 45.455 0.00 0.00 0.00 4.00
293 294 1.543429 CCCTTCTCACCCTGTTGACAC 60.543 57.143 0.00 0.00 0.00 3.67
323 324 2.905415 TGCCATTTGTTCCTCCAGAT 57.095 45.000 0.00 0.00 0.00 2.90
379 380 1.992519 GATGCAGGAGGCCATGGAGT 61.993 60.000 18.40 0.00 43.89 3.85
402 403 2.048444 TCTGCTTGATCCAGATTGCC 57.952 50.000 0.00 0.00 34.59 4.52
527 538 1.153429 GCCTTCGGCCGTGACTATT 60.153 57.895 27.15 0.00 44.06 1.73
565 577 2.487805 CCTATTTGCTGGATGCTGCCTA 60.488 50.000 13.35 2.02 43.37 3.93
573 586 0.183492 GGATGCTGCCTATTGGTGGA 59.817 55.000 0.00 0.00 35.27 4.02
616 629 3.288809 GCTCCTTGCGTCTTCATTTTT 57.711 42.857 0.00 0.00 0.00 1.94
622 635 7.095649 GCTCCTTGCGTCTTCATTTTTAAAAAT 60.096 33.333 18.40 18.40 39.07 1.82
643 656 9.968743 AAAAATAAGTTTCTAATACTCGCTTCG 57.031 29.630 0.00 0.00 0.00 3.79
644 657 8.922058 AAATAAGTTTCTAATACTCGCTTCGA 57.078 30.769 0.00 0.00 0.00 3.71
645 658 9.530633 AAATAAGTTTCTAATACTCGCTTCGAT 57.469 29.630 0.00 0.00 34.61 3.59
646 659 8.730970 ATAAGTTTCTAATACTCGCTTCGATC 57.269 34.615 0.00 0.00 34.61 3.69
647 660 5.521544 AGTTTCTAATACTCGCTTCGATCC 58.478 41.667 0.00 0.00 34.61 3.36
648 661 5.067413 AGTTTCTAATACTCGCTTCGATCCA 59.933 40.000 0.00 0.00 34.61 3.41
649 662 5.509716 TTCTAATACTCGCTTCGATCCAA 57.490 39.130 0.00 0.00 34.61 3.53
650 663 5.509716 TCTAATACTCGCTTCGATCCAAA 57.490 39.130 0.00 0.00 34.61 3.28
651 664 5.898174 TCTAATACTCGCTTCGATCCAAAA 58.102 37.500 0.00 0.00 34.61 2.44
652 665 6.513180 TCTAATACTCGCTTCGATCCAAAAT 58.487 36.000 0.00 0.00 34.61 1.82
653 666 7.654568 TCTAATACTCGCTTCGATCCAAAATA 58.345 34.615 0.00 0.00 34.61 1.40
654 667 8.139350 TCTAATACTCGCTTCGATCCAAAATAA 58.861 33.333 0.00 0.00 34.61 1.40
655 668 7.730364 AATACTCGCTTCGATCCAAAATAAT 57.270 32.000 0.00 0.00 34.61 1.28
656 669 8.827177 AATACTCGCTTCGATCCAAAATAATA 57.173 30.769 0.00 0.00 34.61 0.98
657 670 6.771188 ACTCGCTTCGATCCAAAATAATAG 57.229 37.500 0.00 0.00 34.61 1.73
658 671 6.513180 ACTCGCTTCGATCCAAAATAATAGA 58.487 36.000 0.00 0.00 34.61 1.98
659 672 6.642950 ACTCGCTTCGATCCAAAATAATAGAG 59.357 38.462 0.00 0.00 34.61 2.43
660 673 6.745116 TCGCTTCGATCCAAAATAATAGAGA 58.255 36.000 0.00 0.00 0.00 3.10
661 674 7.378966 TCGCTTCGATCCAAAATAATAGAGAT 58.621 34.615 0.00 0.00 0.00 2.75
662 675 7.872993 TCGCTTCGATCCAAAATAATAGAGATT 59.127 33.333 0.00 0.00 0.00 2.40
663 676 7.954248 CGCTTCGATCCAAAATAATAGAGATTG 59.046 37.037 0.00 0.00 0.00 2.67
664 677 7.748241 GCTTCGATCCAAAATAATAGAGATTGC 59.252 37.037 0.00 0.00 0.00 3.56
665 678 7.672983 TCGATCCAAAATAATAGAGATTGCC 57.327 36.000 0.00 0.00 0.00 4.52
666 679 7.453393 TCGATCCAAAATAATAGAGATTGCCT 58.547 34.615 0.00 0.00 0.00 4.75
667 680 7.604164 TCGATCCAAAATAATAGAGATTGCCTC 59.396 37.037 0.00 0.00 42.28 4.70
668 681 7.388776 CGATCCAAAATAATAGAGATTGCCTCA 59.611 37.037 0.00 0.00 44.40 3.86
669 682 8.632906 ATCCAAAATAATAGAGATTGCCTCAG 57.367 34.615 0.00 0.00 44.40 3.35
670 683 7.577303 TCCAAAATAATAGAGATTGCCTCAGT 58.423 34.615 0.00 0.00 44.40 3.41
671 684 8.055181 TCCAAAATAATAGAGATTGCCTCAGTT 58.945 33.333 0.00 0.00 44.40 3.16
672 685 9.342308 CCAAAATAATAGAGATTGCCTCAGTTA 57.658 33.333 0.00 0.00 44.40 2.24
677 690 7.721286 AATAGAGATTGCCTCAGTTAATTCG 57.279 36.000 0.00 0.00 44.40 3.34
678 691 4.446371 AGAGATTGCCTCAGTTAATTCGG 58.554 43.478 0.00 0.00 44.40 4.30
679 692 4.162320 AGAGATTGCCTCAGTTAATTCGGA 59.838 41.667 0.00 0.00 44.40 4.55
680 693 5.041191 AGATTGCCTCAGTTAATTCGGAT 57.959 39.130 0.00 0.00 0.00 4.18
681 694 5.059833 AGATTGCCTCAGTTAATTCGGATC 58.940 41.667 0.00 0.00 0.00 3.36
682 695 2.821546 TGCCTCAGTTAATTCGGATCG 58.178 47.619 0.00 0.00 0.00 3.69
683 696 2.429250 TGCCTCAGTTAATTCGGATCGA 59.571 45.455 0.00 0.00 0.00 3.59
693 706 2.431954 TTCGGATCGAAGGTAGGAGT 57.568 50.000 0.00 0.00 41.05 3.85
694 707 3.565764 TTCGGATCGAAGGTAGGAGTA 57.434 47.619 0.00 0.00 41.05 2.59
695 708 3.123157 TCGGATCGAAGGTAGGAGTAG 57.877 52.381 0.00 0.00 31.06 2.57
696 709 2.437281 TCGGATCGAAGGTAGGAGTAGT 59.563 50.000 0.00 0.00 31.06 2.73
697 710 3.643320 TCGGATCGAAGGTAGGAGTAGTA 59.357 47.826 0.00 0.00 31.06 1.82
698 711 3.995705 CGGATCGAAGGTAGGAGTAGTAG 59.004 52.174 0.00 0.00 0.00 2.57
699 712 4.502950 CGGATCGAAGGTAGGAGTAGTAGT 60.503 50.000 0.00 0.00 0.00 2.73
700 713 5.279206 CGGATCGAAGGTAGGAGTAGTAGTA 60.279 48.000 0.00 0.00 0.00 1.82
701 714 6.165577 GGATCGAAGGTAGGAGTAGTAGTAG 58.834 48.000 0.00 0.00 0.00 2.57
702 715 6.239572 GGATCGAAGGTAGGAGTAGTAGTAGT 60.240 46.154 0.00 0.00 0.00 2.73
703 716 6.155475 TCGAAGGTAGGAGTAGTAGTAGTC 57.845 45.833 4.07 4.07 0.00 2.59
704 717 5.896678 TCGAAGGTAGGAGTAGTAGTAGTCT 59.103 44.000 11.40 2.28 0.00 3.24
705 718 7.063593 TCGAAGGTAGGAGTAGTAGTAGTCTA 58.936 42.308 11.40 1.49 0.00 2.59
706 719 7.230510 TCGAAGGTAGGAGTAGTAGTAGTCTAG 59.769 44.444 11.40 0.00 0.00 2.43
707 720 7.014230 CGAAGGTAGGAGTAGTAGTAGTCTAGT 59.986 44.444 11.40 0.00 34.58 2.57
708 721 9.362151 GAAGGTAGGAGTAGTAGTAGTCTAGTA 57.638 40.741 11.40 0.00 32.70 1.82
709 722 8.940397 AGGTAGGAGTAGTAGTAGTCTAGTAG 57.060 42.308 11.40 0.00 34.09 2.57
710 723 8.511126 AGGTAGGAGTAGTAGTAGTCTAGTAGT 58.489 40.741 11.40 7.16 38.01 2.73
711 724 9.802039 GGTAGGAGTAGTAGTAGTCTAGTAGTA 57.198 40.741 11.40 5.49 36.44 1.82
741 754 1.643868 ATGCATTGTACGGTGCGTGG 61.644 55.000 14.09 0.00 44.11 4.94
789 802 0.595567 TTCGTCTGACCGTTTCACCG 60.596 55.000 1.55 0.00 0.00 4.94
1257 1276 4.467084 TTGATCTCCACCGCGGCC 62.467 66.667 28.58 6.28 33.14 6.13
1735 1754 2.273449 CCGCAGCCAATTCCCTCT 59.727 61.111 0.00 0.00 0.00 3.69
1798 1817 0.600255 GCTCCGTGGATCCAATACCG 60.600 60.000 18.20 15.66 0.00 4.02
1831 1860 3.235776 TCCTTTCTGGTTGGGACAAGGA 61.236 50.000 0.00 0.00 37.95 3.36
1924 1957 2.434359 GAAACGGACGAGCCAGGG 60.434 66.667 0.00 0.00 35.94 4.45
1962 1995 4.154195 CGGATGTCCTCGATTGAAAAGTTT 59.846 41.667 0.00 0.00 0.00 2.66
1968 2001 6.861055 TGTCCTCGATTGAAAAGTTTATTTGC 59.139 34.615 0.00 0.00 0.00 3.68
1995 2028 5.181245 TGTCCTCGATTGGAAAGTTGATTTC 59.819 40.000 0.00 0.00 45.60 2.17
2076 2109 5.124776 CCACAGTCCACAAGTTGTTTTTAGA 59.875 40.000 5.57 0.00 0.00 2.10
2077 2110 6.258160 CACAGTCCACAAGTTGTTTTTAGAG 58.742 40.000 5.57 0.00 0.00 2.43
2078 2111 5.163652 ACAGTCCACAAGTTGTTTTTAGAGC 60.164 40.000 5.57 0.00 0.00 4.09
2079 2112 4.947388 AGTCCACAAGTTGTTTTTAGAGCA 59.053 37.500 5.57 0.00 0.00 4.26
2080 2113 5.417580 AGTCCACAAGTTGTTTTTAGAGCAA 59.582 36.000 5.57 0.00 0.00 3.91
2081 2114 5.743872 GTCCACAAGTTGTTTTTAGAGCAAG 59.256 40.000 5.57 0.00 0.00 4.01
2082 2115 5.417580 TCCACAAGTTGTTTTTAGAGCAAGT 59.582 36.000 5.57 0.00 0.00 3.16
2083 2116 6.600032 TCCACAAGTTGTTTTTAGAGCAAGTA 59.400 34.615 5.57 0.00 0.00 2.24
2084 2117 7.284489 TCCACAAGTTGTTTTTAGAGCAAGTAT 59.716 33.333 5.57 0.00 0.00 2.12
2085 2118 8.564574 CCACAAGTTGTTTTTAGAGCAAGTATA 58.435 33.333 5.57 0.00 0.00 1.47
2086 2119 9.944663 CACAAGTTGTTTTTAGAGCAAGTATAA 57.055 29.630 5.57 0.00 0.00 0.98
2096 2129 9.973450 TTTTAGAGCAAGTATAATAGAGCTGAG 57.027 33.333 0.00 0.00 31.61 3.35
2097 2130 8.698973 TTAGAGCAAGTATAATAGAGCTGAGT 57.301 34.615 0.00 0.00 31.61 3.41
2098 2131 7.214467 AGAGCAAGTATAATAGAGCTGAGTC 57.786 40.000 0.00 0.00 31.61 3.36
2099 2132 6.208599 AGAGCAAGTATAATAGAGCTGAGTCC 59.791 42.308 0.00 0.00 31.61 3.85
2100 2133 5.048364 AGCAAGTATAATAGAGCTGAGTCCG 60.048 44.000 0.00 0.00 0.00 4.79
2101 2134 5.157781 CAAGTATAATAGAGCTGAGTCCGC 58.842 45.833 0.00 0.00 0.00 5.54
2102 2135 2.999507 ATAATAGAGCTGAGTCCGCG 57.000 50.000 0.00 0.00 0.00 6.46
2103 2136 0.952280 TAATAGAGCTGAGTCCGCGG 59.048 55.000 22.12 22.12 0.00 6.46
2104 2137 1.739338 AATAGAGCTGAGTCCGCGGG 61.739 60.000 27.83 10.00 0.00 6.13
2109 2142 3.449227 CTGAGTCCGCGGGCTGTA 61.449 66.667 40.95 24.62 0.00 2.74
2110 2143 2.992689 TGAGTCCGCGGGCTGTAA 60.993 61.111 40.95 20.20 0.00 2.41
2111 2144 2.202756 GAGTCCGCGGGCTGTAAG 60.203 66.667 40.95 1.74 0.00 2.34
2112 2145 3.718210 GAGTCCGCGGGCTGTAAGG 62.718 68.421 40.95 0.82 0.00 2.69
2113 2146 3.766691 GTCCGCGGGCTGTAAGGA 61.767 66.667 25.46 0.00 0.00 3.36
2114 2147 2.998480 TCCGCGGGCTGTAAGGAA 60.998 61.111 27.83 0.00 0.00 3.36
2115 2148 2.189521 CCGCGGGCTGTAAGGAAT 59.810 61.111 20.10 0.00 0.00 3.01
2116 2149 1.044231 TCCGCGGGCTGTAAGGAATA 61.044 55.000 27.83 0.00 0.00 1.75
2117 2150 0.034896 CCGCGGGCTGTAAGGAATAT 59.965 55.000 20.10 0.00 0.00 1.28
2118 2151 1.274167 CCGCGGGCTGTAAGGAATATA 59.726 52.381 20.10 0.00 0.00 0.86
2119 2152 2.334838 CGCGGGCTGTAAGGAATATAC 58.665 52.381 0.00 0.00 0.00 1.47
2120 2153 2.029290 CGCGGGCTGTAAGGAATATACT 60.029 50.000 0.00 0.00 0.00 2.12
2121 2154 3.192001 CGCGGGCTGTAAGGAATATACTA 59.808 47.826 0.00 0.00 0.00 1.82
2122 2155 4.321452 CGCGGGCTGTAAGGAATATACTAA 60.321 45.833 0.00 0.00 0.00 2.24
2123 2156 5.623824 CGCGGGCTGTAAGGAATATACTAAT 60.624 44.000 0.00 0.00 0.00 1.73
2124 2157 6.405065 CGCGGGCTGTAAGGAATATACTAATA 60.405 42.308 0.00 0.00 0.00 0.98
2125 2158 7.325694 GCGGGCTGTAAGGAATATACTAATAA 58.674 38.462 0.00 0.00 0.00 1.40
2126 2159 7.820872 GCGGGCTGTAAGGAATATACTAATAAA 59.179 37.037 0.00 0.00 0.00 1.40
2127 2160 9.148104 CGGGCTGTAAGGAATATACTAATAAAC 57.852 37.037 0.00 0.00 0.00 2.01
2152 2185 9.080097 ACTAGTATATTACTGCTTAGTTGGAGG 57.920 37.037 0.00 0.00 39.81 4.30
2153 2186 9.298250 CTAGTATATTACTGCTTAGTTGGAGGA 57.702 37.037 0.00 0.00 39.81 3.71
2154 2187 8.548880 AGTATATTACTGCTTAGTTGGAGGAA 57.451 34.615 0.00 0.00 37.69 3.36
2155 2188 8.989131 AGTATATTACTGCTTAGTTGGAGGAAA 58.011 33.333 0.00 0.00 37.69 3.13
2156 2189 9.262358 GTATATTACTGCTTAGTTGGAGGAAAG 57.738 37.037 0.00 0.00 32.09 2.62
2157 2190 5.818678 TTACTGCTTAGTTGGAGGAAAGA 57.181 39.130 0.00 0.00 0.00 2.52
2158 2191 4.278975 ACTGCTTAGTTGGAGGAAAGAG 57.721 45.455 0.00 0.00 0.00 2.85
2159 2192 3.904339 ACTGCTTAGTTGGAGGAAAGAGA 59.096 43.478 0.00 0.00 0.00 3.10
2160 2193 4.348168 ACTGCTTAGTTGGAGGAAAGAGAA 59.652 41.667 0.00 0.00 0.00 2.87
2161 2194 5.013599 ACTGCTTAGTTGGAGGAAAGAGAAT 59.986 40.000 0.00 0.00 0.00 2.40
2162 2195 6.213600 ACTGCTTAGTTGGAGGAAAGAGAATA 59.786 38.462 0.00 0.00 0.00 1.75
2163 2196 6.644347 TGCTTAGTTGGAGGAAAGAGAATAG 58.356 40.000 0.00 0.00 0.00 1.73
2164 2197 6.052360 GCTTAGTTGGAGGAAAGAGAATAGG 58.948 44.000 0.00 0.00 0.00 2.57
2165 2198 6.127026 GCTTAGTTGGAGGAAAGAGAATAGGA 60.127 42.308 0.00 0.00 0.00 2.94
2166 2199 5.948742 AGTTGGAGGAAAGAGAATAGGAG 57.051 43.478 0.00 0.00 0.00 3.69
2167 2200 5.594777 AGTTGGAGGAAAGAGAATAGGAGA 58.405 41.667 0.00 0.00 0.00 3.71
2168 2201 5.660864 AGTTGGAGGAAAGAGAATAGGAGAG 59.339 44.000 0.00 0.00 0.00 3.20
2169 2202 5.473849 TGGAGGAAAGAGAATAGGAGAGA 57.526 43.478 0.00 0.00 0.00 3.10
2170 2203 5.454062 TGGAGGAAAGAGAATAGGAGAGAG 58.546 45.833 0.00 0.00 0.00 3.20
2171 2204 5.194740 TGGAGGAAAGAGAATAGGAGAGAGA 59.805 44.000 0.00 0.00 0.00 3.10
2172 2205 6.133356 GGAGGAAAGAGAATAGGAGAGAGAA 58.867 44.000 0.00 0.00 0.00 2.87
2173 2206 6.265422 GGAGGAAAGAGAATAGGAGAGAGAAG 59.735 46.154 0.00 0.00 0.00 2.85
2174 2207 6.136155 AGGAAAGAGAATAGGAGAGAGAAGG 58.864 44.000 0.00 0.00 0.00 3.46
2175 2208 5.897250 GGAAAGAGAATAGGAGAGAGAAGGT 59.103 44.000 0.00 0.00 0.00 3.50
2176 2209 7.064229 GGAAAGAGAATAGGAGAGAGAAGGTA 58.936 42.308 0.00 0.00 0.00 3.08
2177 2210 7.562088 GGAAAGAGAATAGGAGAGAGAAGGTAA 59.438 40.741 0.00 0.00 0.00 2.85
2178 2211 8.533569 AAAGAGAATAGGAGAGAGAAGGTAAG 57.466 38.462 0.00 0.00 0.00 2.34
2179 2212 6.068670 AGAGAATAGGAGAGAGAAGGTAAGC 58.931 44.000 0.00 0.00 0.00 3.09
2180 2213 4.825085 AGAATAGGAGAGAGAAGGTAAGCG 59.175 45.833 0.00 0.00 0.00 4.68
2181 2214 1.770294 AGGAGAGAGAAGGTAAGCGG 58.230 55.000 0.00 0.00 0.00 5.52
2182 2215 0.747852 GGAGAGAGAAGGTAAGCGGG 59.252 60.000 0.00 0.00 0.00 6.13
2183 2216 1.476477 GAGAGAGAAGGTAAGCGGGT 58.524 55.000 0.00 0.00 0.00 5.28
2184 2217 1.406180 GAGAGAGAAGGTAAGCGGGTC 59.594 57.143 0.00 0.00 0.00 4.46
2185 2218 1.006162 AGAGAGAAGGTAAGCGGGTCT 59.994 52.381 0.00 0.00 0.00 3.85
2186 2219 1.826096 GAGAGAAGGTAAGCGGGTCTT 59.174 52.381 0.00 0.00 38.79 3.01
2187 2220 1.826096 AGAGAAGGTAAGCGGGTCTTC 59.174 52.381 0.00 0.00 36.25 2.87
2188 2221 0.531200 AGAAGGTAAGCGGGTCTTCG 59.469 55.000 0.00 0.00 40.16 3.79
2189 2222 0.245813 GAAGGTAAGCGGGTCTTCGT 59.754 55.000 0.00 0.00 36.25 3.85
2190 2223 0.037605 AAGGTAAGCGGGTCTTCGTG 60.038 55.000 0.00 0.00 36.25 4.35
2191 2224 0.896940 AGGTAAGCGGGTCTTCGTGA 60.897 55.000 0.00 0.00 36.25 4.35
2192 2225 0.037975 GGTAAGCGGGTCTTCGTGAA 60.038 55.000 0.00 0.00 36.25 3.18
2193 2226 1.347320 GTAAGCGGGTCTTCGTGAAG 58.653 55.000 3.17 3.17 39.71 3.02
2194 2227 1.068055 GTAAGCGGGTCTTCGTGAAGA 60.068 52.381 8.19 8.19 44.47 2.87
2200 2233 1.149148 GGTCTTCGTGAAGAACCAGC 58.851 55.000 15.26 3.09 46.64 4.85
2201 2234 1.270358 GGTCTTCGTGAAGAACCAGCT 60.270 52.381 15.26 0.00 46.64 4.24
2202 2235 2.440539 TCTTCGTGAAGAACCAGCTC 57.559 50.000 9.78 0.00 43.79 4.09
2203 2236 1.964223 TCTTCGTGAAGAACCAGCTCT 59.036 47.619 9.78 0.00 43.79 4.09
2204 2237 3.154710 TCTTCGTGAAGAACCAGCTCTA 58.845 45.455 9.78 0.00 43.79 2.43
2205 2238 3.191581 TCTTCGTGAAGAACCAGCTCTAG 59.808 47.826 9.78 0.00 43.79 2.43
2206 2239 1.202582 TCGTGAAGAACCAGCTCTAGC 59.797 52.381 0.00 0.00 42.49 3.42
2207 2240 1.067565 CGTGAAGAACCAGCTCTAGCA 60.068 52.381 4.54 0.00 45.16 3.49
2208 2241 2.342179 GTGAAGAACCAGCTCTAGCAC 58.658 52.381 4.54 0.00 45.16 4.40
2209 2242 1.067565 TGAAGAACCAGCTCTAGCACG 60.068 52.381 4.54 0.00 45.16 5.34
2210 2243 0.969894 AAGAACCAGCTCTAGCACGT 59.030 50.000 4.54 0.00 45.16 4.49
2211 2244 0.244994 AGAACCAGCTCTAGCACGTG 59.755 55.000 12.28 12.28 45.16 4.49
2212 2245 1.355066 GAACCAGCTCTAGCACGTGC 61.355 60.000 32.79 32.79 45.16 5.34
2225 2258 3.334272 GCACGTGCTCTTAAACACTTT 57.666 42.857 32.55 0.00 38.21 2.66
2226 2259 3.035942 GCACGTGCTCTTAAACACTTTG 58.964 45.455 32.55 0.00 38.21 2.77
2227 2260 3.486875 GCACGTGCTCTTAAACACTTTGT 60.487 43.478 32.55 0.00 38.21 2.83
2228 2261 4.028383 CACGTGCTCTTAAACACTTTGTG 58.972 43.478 0.82 0.00 39.75 3.33
2229 2262 3.936453 ACGTGCTCTTAAACACTTTGTGA 59.064 39.130 4.61 0.00 36.96 3.58
2230 2263 4.034048 ACGTGCTCTTAAACACTTTGTGAG 59.966 41.667 4.61 0.00 36.96 3.51
2231 2264 4.270084 CGTGCTCTTAAACACTTTGTGAGA 59.730 41.667 4.61 0.00 36.96 3.27
2232 2265 5.220586 CGTGCTCTTAAACACTTTGTGAGAA 60.221 40.000 4.61 0.00 36.96 2.87
2233 2266 6.511767 CGTGCTCTTAAACACTTTGTGAGAAT 60.512 38.462 4.61 0.00 36.96 2.40
2234 2267 6.634436 GTGCTCTTAAACACTTTGTGAGAATG 59.366 38.462 4.61 0.00 36.96 2.67
2235 2268 6.542005 TGCTCTTAAACACTTTGTGAGAATGA 59.458 34.615 4.61 0.00 36.96 2.57
2236 2269 7.066887 TGCTCTTAAACACTTTGTGAGAATGAA 59.933 33.333 4.61 0.00 36.96 2.57
2237 2270 7.915397 GCTCTTAAACACTTTGTGAGAATGAAA 59.085 33.333 4.61 0.00 36.96 2.69
2238 2271 9.443283 CTCTTAAACACTTTGTGAGAATGAAAG 57.557 33.333 4.61 0.00 36.96 2.62
2239 2272 8.405531 TCTTAAACACTTTGTGAGAATGAAAGG 58.594 33.333 4.61 0.00 36.96 3.11
2240 2273 6.530019 AAACACTTTGTGAGAATGAAAGGT 57.470 33.333 4.61 0.00 36.96 3.50
2241 2274 5.505173 ACACTTTGTGAGAATGAAAGGTG 57.495 39.130 4.61 0.00 36.96 4.00
2242 2275 5.192927 ACACTTTGTGAGAATGAAAGGTGA 58.807 37.500 4.61 0.00 36.96 4.02
2243 2276 5.297776 ACACTTTGTGAGAATGAAAGGTGAG 59.702 40.000 4.61 0.00 36.96 3.51
2244 2277 4.276926 ACTTTGTGAGAATGAAAGGTGAGC 59.723 41.667 0.00 0.00 0.00 4.26
2245 2278 2.783135 TGTGAGAATGAAAGGTGAGCC 58.217 47.619 0.00 0.00 0.00 4.70
2246 2279 2.106338 TGTGAGAATGAAAGGTGAGCCA 59.894 45.455 0.00 0.00 37.19 4.75
2247 2280 2.485814 GTGAGAATGAAAGGTGAGCCAC 59.514 50.000 0.00 0.00 37.19 5.01
2248 2281 2.106338 TGAGAATGAAAGGTGAGCCACA 59.894 45.455 7.49 0.00 35.86 4.17
2249 2282 3.245016 TGAGAATGAAAGGTGAGCCACAT 60.245 43.478 7.49 0.00 35.86 3.21
2250 2283 4.019411 TGAGAATGAAAGGTGAGCCACATA 60.019 41.667 7.49 0.00 35.86 2.29
2251 2284 4.922206 AGAATGAAAGGTGAGCCACATAA 58.078 39.130 7.49 0.00 35.86 1.90
2252 2285 5.513233 AGAATGAAAGGTGAGCCACATAAT 58.487 37.500 7.49 0.00 35.86 1.28
2253 2286 6.662755 AGAATGAAAGGTGAGCCACATAATA 58.337 36.000 7.49 0.00 35.86 0.98
2254 2287 7.118723 AGAATGAAAGGTGAGCCACATAATAA 58.881 34.615 7.49 0.00 35.86 1.40
2255 2288 7.781693 AGAATGAAAGGTGAGCCACATAATAAT 59.218 33.333 7.49 0.00 35.86 1.28
2256 2289 8.995027 AATGAAAGGTGAGCCACATAATAATA 57.005 30.769 7.49 0.00 35.86 0.98
2257 2290 8.995027 ATGAAAGGTGAGCCACATAATAATAA 57.005 30.769 7.49 0.00 35.86 1.40
2258 2291 8.815565 TGAAAGGTGAGCCACATAATAATAAA 57.184 30.769 7.49 0.00 35.86 1.40
2259 2292 9.249053 TGAAAGGTGAGCCACATAATAATAAAA 57.751 29.630 7.49 0.00 35.86 1.52
2289 2322 8.902540 ACACTCTTTTGATCAACTATTGTACA 57.097 30.769 7.89 0.00 0.00 2.90
2290 2323 9.507329 ACACTCTTTTGATCAACTATTGTACAT 57.493 29.630 7.89 0.00 0.00 2.29
2291 2324 9.764870 CACTCTTTTGATCAACTATTGTACATG 57.235 33.333 7.89 0.00 0.00 3.21
2292 2325 9.507329 ACTCTTTTGATCAACTATTGTACATGT 57.493 29.630 7.89 2.69 0.00 3.21
2297 2330 9.448438 TTTGATCAACTATTGTACATGTTAGCT 57.552 29.630 7.89 0.00 0.00 3.32
2310 2343 8.749841 GTACATGTTAGCTATAAGATGGACTG 57.250 38.462 12.41 2.06 46.11 3.51
2311 2344 7.366847 ACATGTTAGCTATAAGATGGACTGT 57.633 36.000 10.22 1.31 43.55 3.55
2312 2345 8.478775 ACATGTTAGCTATAAGATGGACTGTA 57.521 34.615 10.22 0.00 43.55 2.74
2313 2346 9.094578 ACATGTTAGCTATAAGATGGACTGTAT 57.905 33.333 10.22 0.00 43.55 2.29
2319 2352 8.885693 AGCTATAAGATGGACTGTATATGACA 57.114 34.615 0.00 0.00 36.35 3.58
2320 2353 9.486123 AGCTATAAGATGGACTGTATATGACAT 57.514 33.333 0.00 0.00 37.45 3.06
2321 2354 9.526713 GCTATAAGATGGACTGTATATGACATG 57.473 37.037 0.00 0.00 37.45 3.21
2323 2356 5.157940 AGATGGACTGTATATGACATGGC 57.842 43.478 0.00 0.00 37.45 4.40
2324 2357 4.594491 AGATGGACTGTATATGACATGGCA 59.406 41.667 2.18 2.18 37.45 4.92
2325 2358 4.071961 TGGACTGTATATGACATGGCAC 57.928 45.455 1.45 0.00 37.45 5.01
2326 2359 3.711190 TGGACTGTATATGACATGGCACT 59.289 43.478 1.45 0.00 37.45 4.40
2327 2360 4.060900 GGACTGTATATGACATGGCACTG 58.939 47.826 1.45 0.00 37.45 3.66
2328 2361 4.060900 GACTGTATATGACATGGCACTGG 58.939 47.826 1.45 0.00 37.45 4.00
2329 2362 2.810274 CTGTATATGACATGGCACTGGC 59.190 50.000 1.45 0.00 37.45 4.85
2330 2363 2.439135 TGTATATGACATGGCACTGGCT 59.561 45.455 1.45 0.00 34.71 4.75
2331 2364 2.742428 ATATGACATGGCACTGGCTT 57.258 45.000 1.45 0.00 40.87 4.35
2332 2365 3.862877 ATATGACATGGCACTGGCTTA 57.137 42.857 1.45 0.00 40.87 3.09
2333 2366 2.742428 ATGACATGGCACTGGCTTAT 57.258 45.000 1.45 0.00 40.87 1.73
2334 2367 3.862877 ATGACATGGCACTGGCTTATA 57.137 42.857 1.45 0.00 40.87 0.98
2335 2368 3.198409 TGACATGGCACTGGCTTATAG 57.802 47.619 0.00 0.00 40.87 1.31
2336 2369 1.876156 GACATGGCACTGGCTTATAGC 59.124 52.381 3.97 0.00 41.46 2.97
2361 2394 4.894784 GCAGCTGGCTATACTATTAACCA 58.105 43.478 17.12 0.00 40.25 3.67
2362 2395 5.491982 GCAGCTGGCTATACTATTAACCAT 58.508 41.667 17.12 0.00 40.25 3.55
2363 2396 5.352569 GCAGCTGGCTATACTATTAACCATG 59.647 44.000 17.12 0.00 40.25 3.66
2364 2397 5.352569 CAGCTGGCTATACTATTAACCATGC 59.647 44.000 5.57 0.00 0.00 4.06
2365 2398 5.249393 AGCTGGCTATACTATTAACCATGCT 59.751 40.000 0.00 0.00 31.38 3.79
2366 2399 5.582665 GCTGGCTATACTATTAACCATGCTC 59.417 44.000 0.00 0.00 0.00 4.26
2367 2400 6.575254 GCTGGCTATACTATTAACCATGCTCT 60.575 42.308 0.00 0.00 0.00 4.09
2368 2401 6.936279 TGGCTATACTATTAACCATGCTCTC 58.064 40.000 0.00 0.00 0.00 3.20
2369 2402 6.496911 TGGCTATACTATTAACCATGCTCTCA 59.503 38.462 0.00 0.00 0.00 3.27
2370 2403 7.038659 GGCTATACTATTAACCATGCTCTCAG 58.961 42.308 0.00 0.00 0.00 3.35
2465 2498 3.461773 GGGTCGCTAGGCTGCTCA 61.462 66.667 0.00 0.00 0.00 4.26
2485 2518 2.554370 TTGGTGGTGGTAGTGCTTAC 57.446 50.000 0.00 0.00 0.00 2.34
2535 2569 5.421693 AGATCCAGAATTCCAGATCGATAGG 59.578 44.000 21.03 3.70 40.06 2.57
2604 2672 3.069980 GAGCGGTCGACCTCAGCAT 62.070 63.158 30.92 16.40 0.00 3.79
2624 2692 3.708563 TGCACCTAAGTGTTTTTGCTC 57.291 42.857 0.00 0.00 46.35 4.26
2626 2694 3.315191 TGCACCTAAGTGTTTTTGCTCTC 59.685 43.478 0.00 0.00 46.35 3.20
2631 2700 7.035612 CACCTAAGTGTTTTTGCTCTCTTTTT 58.964 34.615 0.00 0.00 39.30 1.94
2658 2727 0.257905 AAAAGGAGGATAACCCCGGC 59.742 55.000 0.00 0.00 36.73 6.13
2692 2761 5.405571 TGTTTTTGCTCTACGAGAACATCTC 59.594 40.000 0.00 0.00 40.06 2.75
2720 2789 0.744414 ATCCTCAAACCGTCCGCATG 60.744 55.000 0.00 0.00 0.00 4.06
2724 2798 1.729131 CAAACCGTCCGCATGCAAC 60.729 57.895 19.57 13.95 0.00 4.17
2731 2805 1.817520 TCCGCATGCAACCGTATGG 60.818 57.895 19.57 8.10 35.90 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 147 2.131183 GAATATCACGGAGCTCACTGC 58.869 52.381 17.19 0.00 43.29 4.40
171 172 1.051812 CGAATCCACCCCTATGAGCT 58.948 55.000 0.00 0.00 0.00 4.09
222 223 5.070981 TCTGATAGTCCAAAGAGCCCATAAG 59.929 44.000 0.00 0.00 0.00 1.73
323 324 1.784301 TTTCCCCAACGGCATCCAGA 61.784 55.000 0.00 0.00 0.00 3.86
385 386 1.378882 GCGGCAATCTGGATCAAGCA 61.379 55.000 0.00 0.00 0.00 3.91
402 403 1.726791 ACAACAGCTTAATGACGAGCG 59.273 47.619 0.00 0.00 43.53 5.03
456 460 7.011857 GGCCTGAATAAGATGAAACAGTCTAAG 59.988 40.741 0.00 0.00 0.00 2.18
489 500 3.056607 GGCCAAGTTTGATACATGCAACT 60.057 43.478 0.00 0.00 0.00 3.16
527 538 6.474102 GCAAATAGGACAGACGAAAACAAAAA 59.526 34.615 0.00 0.00 0.00 1.94
565 577 9.884636 GGCTTTAAATTAATAAAGTCCACCAAT 57.115 29.630 10.84 0.00 42.34 3.16
573 586 6.260377 GCGTCCGGCTTTAAATTAATAAAGT 58.740 36.000 0.00 0.00 42.34 2.66
622 635 7.137426 GGATCGAAGCGAGTATTAGAAACTTA 58.863 38.462 0.00 0.00 39.91 2.24
625 638 5.279384 TGGATCGAAGCGAGTATTAGAAAC 58.721 41.667 0.00 0.00 39.91 2.78
629 642 6.771188 ATTTTGGATCGAAGCGAGTATTAG 57.229 37.500 0.00 0.00 39.91 1.73
630 643 8.827177 ATTATTTTGGATCGAAGCGAGTATTA 57.173 30.769 0.00 0.00 39.91 0.98
631 644 7.730364 ATTATTTTGGATCGAAGCGAGTATT 57.270 32.000 0.00 0.00 39.91 1.89
632 645 8.304596 TCTATTATTTTGGATCGAAGCGAGTAT 58.695 33.333 0.00 0.00 39.91 2.12
633 646 7.654568 TCTATTATTTTGGATCGAAGCGAGTA 58.345 34.615 0.00 0.00 39.91 2.59
634 647 6.513180 TCTATTATTTTGGATCGAAGCGAGT 58.487 36.000 0.00 0.00 39.91 4.18
635 648 6.863645 TCTCTATTATTTTGGATCGAAGCGAG 59.136 38.462 0.00 0.00 39.91 5.03
636 649 6.745116 TCTCTATTATTTTGGATCGAAGCGA 58.255 36.000 0.00 0.00 41.13 4.93
637 650 7.588143 ATCTCTATTATTTTGGATCGAAGCG 57.412 36.000 0.00 0.00 0.00 4.68
638 651 7.748241 GCAATCTCTATTATTTTGGATCGAAGC 59.252 37.037 0.00 0.00 0.00 3.86
639 652 8.233190 GGCAATCTCTATTATTTTGGATCGAAG 58.767 37.037 0.00 0.00 0.00 3.79
640 653 7.939039 AGGCAATCTCTATTATTTTGGATCGAA 59.061 33.333 0.00 0.00 0.00 3.71
641 654 7.453393 AGGCAATCTCTATTATTTTGGATCGA 58.547 34.615 0.00 0.00 0.00 3.59
642 655 7.388776 TGAGGCAATCTCTATTATTTTGGATCG 59.611 37.037 0.00 0.00 42.86 3.69
643 656 8.627208 TGAGGCAATCTCTATTATTTTGGATC 57.373 34.615 0.00 0.00 42.86 3.36
644 657 8.223330 ACTGAGGCAATCTCTATTATTTTGGAT 58.777 33.333 0.00 0.00 42.86 3.41
645 658 7.577303 ACTGAGGCAATCTCTATTATTTTGGA 58.423 34.615 0.00 0.00 42.86 3.53
646 659 7.814264 ACTGAGGCAATCTCTATTATTTTGG 57.186 36.000 0.00 0.00 42.86 3.28
651 664 9.429359 CGAATTAACTGAGGCAATCTCTATTAT 57.571 33.333 0.00 0.00 42.86 1.28
652 665 7.872993 CCGAATTAACTGAGGCAATCTCTATTA 59.127 37.037 0.00 0.00 42.86 0.98
653 666 6.708054 CCGAATTAACTGAGGCAATCTCTATT 59.292 38.462 0.00 0.00 42.86 1.73
654 667 6.042093 TCCGAATTAACTGAGGCAATCTCTAT 59.958 38.462 0.00 0.00 42.86 1.98
655 668 5.362717 TCCGAATTAACTGAGGCAATCTCTA 59.637 40.000 0.00 0.00 42.86 2.43
656 669 4.162320 TCCGAATTAACTGAGGCAATCTCT 59.838 41.667 0.00 0.00 42.86 3.10
657 670 4.442706 TCCGAATTAACTGAGGCAATCTC 58.557 43.478 0.00 0.00 42.74 2.75
658 671 4.487714 TCCGAATTAACTGAGGCAATCT 57.512 40.909 0.00 0.00 0.00 2.40
659 672 4.084328 CGATCCGAATTAACTGAGGCAATC 60.084 45.833 0.00 0.00 0.00 2.67
660 673 3.809832 CGATCCGAATTAACTGAGGCAAT 59.190 43.478 0.00 0.00 0.00 3.56
661 674 3.118920 TCGATCCGAATTAACTGAGGCAA 60.119 43.478 0.00 0.00 31.06 4.52
662 675 2.429250 TCGATCCGAATTAACTGAGGCA 59.571 45.455 0.00 0.00 31.06 4.75
663 676 3.093717 TCGATCCGAATTAACTGAGGC 57.906 47.619 0.00 0.00 31.06 4.70
664 677 4.051922 CCTTCGATCCGAATTAACTGAGG 58.948 47.826 2.14 0.00 44.85 3.86
665 678 4.683832 ACCTTCGATCCGAATTAACTGAG 58.316 43.478 2.14 0.00 44.85 3.35
666 679 4.730949 ACCTTCGATCCGAATTAACTGA 57.269 40.909 2.14 0.00 44.85 3.41
667 680 4.982916 CCTACCTTCGATCCGAATTAACTG 59.017 45.833 2.14 0.00 44.85 3.16
668 681 4.891756 TCCTACCTTCGATCCGAATTAACT 59.108 41.667 2.14 0.00 44.85 2.24
669 682 5.192327 TCCTACCTTCGATCCGAATTAAC 57.808 43.478 2.14 0.00 44.85 2.01
670 683 4.891756 ACTCCTACCTTCGATCCGAATTAA 59.108 41.667 2.14 0.00 44.85 1.40
671 684 4.467769 ACTCCTACCTTCGATCCGAATTA 58.532 43.478 2.14 0.00 44.85 1.40
672 685 3.297736 ACTCCTACCTTCGATCCGAATT 58.702 45.455 2.14 0.00 44.85 2.17
673 686 2.946785 ACTCCTACCTTCGATCCGAAT 58.053 47.619 2.14 0.00 44.85 3.34
674 687 2.431954 ACTCCTACCTTCGATCCGAA 57.568 50.000 1.78 1.78 43.75 4.30
675 688 2.437281 ACTACTCCTACCTTCGATCCGA 59.563 50.000 0.00 0.00 0.00 4.55
676 689 2.848691 ACTACTCCTACCTTCGATCCG 58.151 52.381 0.00 0.00 0.00 4.18
677 690 4.971939 ACTACTACTCCTACCTTCGATCC 58.028 47.826 0.00 0.00 0.00 3.36
678 691 6.758254 ACTACTACTACTCCTACCTTCGATC 58.242 44.000 0.00 0.00 0.00 3.69
679 692 6.554605 AGACTACTACTACTCCTACCTTCGAT 59.445 42.308 0.00 0.00 0.00 3.59
680 693 5.896678 AGACTACTACTACTCCTACCTTCGA 59.103 44.000 0.00 0.00 0.00 3.71
681 694 6.160576 AGACTACTACTACTCCTACCTTCG 57.839 45.833 0.00 0.00 0.00 3.79
682 695 8.250143 ACTAGACTACTACTACTCCTACCTTC 57.750 42.308 0.00 0.00 0.00 3.46
683 696 9.367160 CTACTAGACTACTACTACTCCTACCTT 57.633 40.741 0.00 0.00 0.00 3.50
684 697 8.511126 ACTACTAGACTACTACTACTCCTACCT 58.489 40.741 0.00 0.00 0.00 3.08
685 698 8.706322 ACTACTAGACTACTACTACTCCTACC 57.294 42.308 0.00 0.00 0.00 3.18
688 701 9.799106 CTCTACTACTAGACTACTACTACTCCT 57.201 40.741 0.00 0.00 0.00 3.69
689 702 9.793259 TCTCTACTACTAGACTACTACTACTCC 57.207 40.741 0.00 0.00 0.00 3.85
695 708 9.778993 CGATCATCTCTACTACTAGACTACTAC 57.221 40.741 0.00 0.00 0.00 2.73
696 709 9.737844 TCGATCATCTCTACTACTAGACTACTA 57.262 37.037 0.00 0.00 0.00 1.82
697 710 8.640063 TCGATCATCTCTACTACTAGACTACT 57.360 38.462 0.00 0.00 0.00 2.57
698 711 9.297586 CATCGATCATCTCTACTACTAGACTAC 57.702 40.741 0.00 0.00 0.00 2.73
699 712 7.977293 GCATCGATCATCTCTACTACTAGACTA 59.023 40.741 0.00 0.00 0.00 2.59
700 713 6.816640 GCATCGATCATCTCTACTACTAGACT 59.183 42.308 0.00 0.00 0.00 3.24
701 714 6.592220 TGCATCGATCATCTCTACTACTAGAC 59.408 42.308 0.00 0.00 0.00 2.59
702 715 6.702329 TGCATCGATCATCTCTACTACTAGA 58.298 40.000 0.00 0.00 0.00 2.43
703 716 6.976636 TGCATCGATCATCTCTACTACTAG 57.023 41.667 0.00 0.00 0.00 2.57
704 717 7.391833 ACAATGCATCGATCATCTCTACTACTA 59.608 37.037 0.00 0.00 0.00 1.82
705 718 6.208402 ACAATGCATCGATCATCTCTACTACT 59.792 38.462 0.00 0.00 0.00 2.57
706 719 6.385843 ACAATGCATCGATCATCTCTACTAC 58.614 40.000 0.00 0.00 0.00 2.73
707 720 6.581171 ACAATGCATCGATCATCTCTACTA 57.419 37.500 0.00 0.00 0.00 1.82
708 721 5.465532 ACAATGCATCGATCATCTCTACT 57.534 39.130 0.00 0.00 0.00 2.57
709 722 5.284897 CGTACAATGCATCGATCATCTCTAC 59.715 44.000 0.00 3.26 0.00 2.59
710 723 5.393962 CGTACAATGCATCGATCATCTCTA 58.606 41.667 0.00 0.00 0.00 2.43
711 724 4.233005 CGTACAATGCATCGATCATCTCT 58.767 43.478 0.00 0.00 0.00 3.10
712 725 3.366121 CCGTACAATGCATCGATCATCTC 59.634 47.826 0.00 0.00 0.00 2.75
713 726 3.243873 ACCGTACAATGCATCGATCATCT 60.244 43.478 0.00 0.00 0.00 2.90
741 754 5.464168 AGCACAAACTGATCTGCATTTAAC 58.536 37.500 5.32 0.00 31.71 2.01
1167 1186 1.671054 CATGGTGGTCGTGGTGGTC 60.671 63.158 0.00 0.00 0.00 4.02
1173 1192 2.027073 CGTGGACATGGTGGTCGTG 61.027 63.158 0.00 0.00 38.70 4.35
1174 1193 2.342279 CGTGGACATGGTGGTCGT 59.658 61.111 0.00 0.00 38.70 4.34
1569 1588 1.913762 CAGGAACCGGTGGAGGAGT 60.914 63.158 8.52 0.00 34.73 3.85
1735 1754 2.050077 CACGCTCGTCAGTCAGCA 60.050 61.111 0.00 0.00 35.15 4.41
1798 1817 1.138883 GAAAGGAAAATCGGCGGCC 59.861 57.895 9.54 9.54 0.00 6.13
1831 1860 6.849151 AGAACTCACCAAACCCTACTAAAAT 58.151 36.000 0.00 0.00 0.00 1.82
1924 1957 3.081804 ACATCCGGAACCTGAAAATGTC 58.918 45.455 9.01 0.00 0.00 3.06
1962 1995 4.584874 TCCAATCGAGGACAAAGCAAATA 58.415 39.130 0.00 0.00 31.23 1.40
1968 2001 4.515191 TCAACTTTCCAATCGAGGACAAAG 59.485 41.667 0.00 0.00 37.42 2.77
1995 2028 2.950433 ACGCTGAATTTCTGGCAAATG 58.050 42.857 12.64 2.82 0.00 2.32
2076 2109 5.048364 CGGACTCAGCTCTATTATACTTGCT 60.048 44.000 0.00 0.00 0.00 3.91
2077 2110 5.157781 CGGACTCAGCTCTATTATACTTGC 58.842 45.833 0.00 0.00 0.00 4.01
2078 2111 5.157781 GCGGACTCAGCTCTATTATACTTG 58.842 45.833 0.00 0.00 0.00 3.16
2079 2112 4.083217 CGCGGACTCAGCTCTATTATACTT 60.083 45.833 0.00 0.00 0.00 2.24
2080 2113 3.437395 CGCGGACTCAGCTCTATTATACT 59.563 47.826 0.00 0.00 0.00 2.12
2081 2114 3.426426 CCGCGGACTCAGCTCTATTATAC 60.426 52.174 24.07 0.00 0.00 1.47
2082 2115 2.747989 CCGCGGACTCAGCTCTATTATA 59.252 50.000 24.07 0.00 0.00 0.98
2083 2116 1.542030 CCGCGGACTCAGCTCTATTAT 59.458 52.381 24.07 0.00 0.00 1.28
2084 2117 0.952280 CCGCGGACTCAGCTCTATTA 59.048 55.000 24.07 0.00 0.00 0.98
2085 2118 1.736586 CCGCGGACTCAGCTCTATT 59.263 57.895 24.07 0.00 0.00 1.73
2086 2119 2.196925 CCCGCGGACTCAGCTCTAT 61.197 63.158 30.73 0.00 0.00 1.98
2087 2120 2.829003 CCCGCGGACTCAGCTCTA 60.829 66.667 30.73 0.00 0.00 2.43
2092 2125 2.890847 CTTACAGCCCGCGGACTCAG 62.891 65.000 30.73 12.58 0.00 3.35
2093 2126 2.992689 TTACAGCCCGCGGACTCA 60.993 61.111 30.73 7.58 0.00 3.41
2094 2127 2.202756 CTTACAGCCCGCGGACTC 60.203 66.667 30.73 15.47 0.00 3.36
2095 2128 3.771160 CCTTACAGCCCGCGGACT 61.771 66.667 30.73 20.39 0.00 3.85
2096 2129 2.588856 ATTCCTTACAGCCCGCGGAC 62.589 60.000 30.73 17.62 0.00 4.79
2097 2130 1.044231 TATTCCTTACAGCCCGCGGA 61.044 55.000 30.73 1.88 0.00 5.54
2098 2131 0.034896 ATATTCCTTACAGCCCGCGG 59.965 55.000 21.04 21.04 0.00 6.46
2099 2132 2.029290 AGTATATTCCTTACAGCCCGCG 60.029 50.000 0.00 0.00 0.00 6.46
2100 2133 3.679824 AGTATATTCCTTACAGCCCGC 57.320 47.619 0.00 0.00 0.00 6.13
2101 2134 9.148104 GTTTATTAGTATATTCCTTACAGCCCG 57.852 37.037 0.00 0.00 0.00 6.13
2126 2159 9.080097 CCTCCAACTAAGCAGTAATATACTAGT 57.920 37.037 0.00 0.00 37.23 2.57
2127 2160 9.298250 TCCTCCAACTAAGCAGTAATATACTAG 57.702 37.037 0.00 0.00 37.23 2.57
2128 2161 9.650714 TTCCTCCAACTAAGCAGTAATATACTA 57.349 33.333 0.00 0.00 37.23 1.82
2129 2162 8.548880 TTCCTCCAACTAAGCAGTAATATACT 57.451 34.615 0.00 0.00 40.28 2.12
2130 2163 9.262358 CTTTCCTCCAACTAAGCAGTAATATAC 57.738 37.037 0.00 0.00 33.48 1.47
2131 2164 9.209048 TCTTTCCTCCAACTAAGCAGTAATATA 57.791 33.333 0.00 0.00 33.48 0.86
2132 2165 8.090788 TCTTTCCTCCAACTAAGCAGTAATAT 57.909 34.615 0.00 0.00 33.48 1.28
2133 2166 7.399191 TCTCTTTCCTCCAACTAAGCAGTAATA 59.601 37.037 0.00 0.00 33.48 0.98
2134 2167 6.213600 TCTCTTTCCTCCAACTAAGCAGTAAT 59.786 38.462 0.00 0.00 33.48 1.89
2135 2168 5.542635 TCTCTTTCCTCCAACTAAGCAGTAA 59.457 40.000 0.00 0.00 33.48 2.24
2136 2169 5.084519 TCTCTTTCCTCCAACTAAGCAGTA 58.915 41.667 0.00 0.00 33.48 2.74
2137 2170 3.904339 TCTCTTTCCTCCAACTAAGCAGT 59.096 43.478 0.00 0.00 36.19 4.40
2138 2171 4.543590 TCTCTTTCCTCCAACTAAGCAG 57.456 45.455 0.00 0.00 0.00 4.24
2139 2172 4.974645 TTCTCTTTCCTCCAACTAAGCA 57.025 40.909 0.00 0.00 0.00 3.91
2140 2173 6.052360 CCTATTCTCTTTCCTCCAACTAAGC 58.948 44.000 0.00 0.00 0.00 3.09
2141 2174 7.343316 TCTCCTATTCTCTTTCCTCCAACTAAG 59.657 40.741 0.00 0.00 0.00 2.18
2142 2175 7.189794 TCTCCTATTCTCTTTCCTCCAACTAA 58.810 38.462 0.00 0.00 0.00 2.24
2143 2176 6.742756 TCTCCTATTCTCTTTCCTCCAACTA 58.257 40.000 0.00 0.00 0.00 2.24
2144 2177 5.594777 TCTCCTATTCTCTTTCCTCCAACT 58.405 41.667 0.00 0.00 0.00 3.16
2145 2178 5.659079 TCTCTCCTATTCTCTTTCCTCCAAC 59.341 44.000 0.00 0.00 0.00 3.77
2146 2179 5.843469 TCTCTCCTATTCTCTTTCCTCCAA 58.157 41.667 0.00 0.00 0.00 3.53
2147 2180 5.194740 TCTCTCTCCTATTCTCTTTCCTCCA 59.805 44.000 0.00 0.00 0.00 3.86
2148 2181 5.701224 TCTCTCTCCTATTCTCTTTCCTCC 58.299 45.833 0.00 0.00 0.00 4.30
2149 2182 6.265422 CCTTCTCTCTCCTATTCTCTTTCCTC 59.735 46.154 0.00 0.00 0.00 3.71
2150 2183 6.136155 CCTTCTCTCTCCTATTCTCTTTCCT 58.864 44.000 0.00 0.00 0.00 3.36
2151 2184 5.897250 ACCTTCTCTCTCCTATTCTCTTTCC 59.103 44.000 0.00 0.00 0.00 3.13
2152 2185 8.528044 TTACCTTCTCTCTCCTATTCTCTTTC 57.472 38.462 0.00 0.00 0.00 2.62
2153 2186 7.069455 GCTTACCTTCTCTCTCCTATTCTCTTT 59.931 40.741 0.00 0.00 0.00 2.52
2154 2187 6.549736 GCTTACCTTCTCTCTCCTATTCTCTT 59.450 42.308 0.00 0.00 0.00 2.85
2155 2188 6.068670 GCTTACCTTCTCTCTCCTATTCTCT 58.931 44.000 0.00 0.00 0.00 3.10
2156 2189 5.048991 CGCTTACCTTCTCTCTCCTATTCTC 60.049 48.000 0.00 0.00 0.00 2.87
2157 2190 4.825085 CGCTTACCTTCTCTCTCCTATTCT 59.175 45.833 0.00 0.00 0.00 2.40
2158 2191 4.022676 CCGCTTACCTTCTCTCTCCTATTC 60.023 50.000 0.00 0.00 0.00 1.75
2159 2192 3.892588 CCGCTTACCTTCTCTCTCCTATT 59.107 47.826 0.00 0.00 0.00 1.73
2160 2193 3.492337 CCGCTTACCTTCTCTCTCCTAT 58.508 50.000 0.00 0.00 0.00 2.57
2161 2194 2.423088 CCCGCTTACCTTCTCTCTCCTA 60.423 54.545 0.00 0.00 0.00 2.94
2162 2195 1.686741 CCCGCTTACCTTCTCTCTCCT 60.687 57.143 0.00 0.00 0.00 3.69
2163 2196 0.747852 CCCGCTTACCTTCTCTCTCC 59.252 60.000 0.00 0.00 0.00 3.71
2164 2197 1.406180 GACCCGCTTACCTTCTCTCTC 59.594 57.143 0.00 0.00 0.00 3.20
2165 2198 1.006162 AGACCCGCTTACCTTCTCTCT 59.994 52.381 0.00 0.00 0.00 3.10
2166 2199 1.476477 AGACCCGCTTACCTTCTCTC 58.524 55.000 0.00 0.00 0.00 3.20
2167 2200 1.826096 GAAGACCCGCTTACCTTCTCT 59.174 52.381 0.00 0.00 36.83 3.10
2168 2201 1.469423 CGAAGACCCGCTTACCTTCTC 60.469 57.143 0.00 0.00 36.83 2.87
2169 2202 0.531200 CGAAGACCCGCTTACCTTCT 59.469 55.000 0.00 0.00 36.83 2.85
2170 2203 0.245813 ACGAAGACCCGCTTACCTTC 59.754 55.000 0.00 0.00 36.83 3.46
2171 2204 0.037605 CACGAAGACCCGCTTACCTT 60.038 55.000 0.00 0.00 36.83 3.50
2172 2205 0.896940 TCACGAAGACCCGCTTACCT 60.897 55.000 0.00 0.00 36.83 3.08
2173 2206 0.037975 TTCACGAAGACCCGCTTACC 60.038 55.000 0.00 0.00 36.83 2.85
2174 2207 1.068055 TCTTCACGAAGACCCGCTTAC 60.068 52.381 5.38 0.00 42.06 2.34
2175 2208 1.250328 TCTTCACGAAGACCCGCTTA 58.750 50.000 5.38 0.00 42.06 3.09
2176 2209 0.391597 TTCTTCACGAAGACCCGCTT 59.608 50.000 8.99 0.00 46.13 4.68
2177 2210 0.319641 GTTCTTCACGAAGACCCGCT 60.320 55.000 8.99 0.00 46.13 5.52
2178 2211 1.289800 GGTTCTTCACGAAGACCCGC 61.290 60.000 8.99 1.28 46.13 6.13
2179 2212 2.823628 GGTTCTTCACGAAGACCCG 58.176 57.895 8.99 0.00 46.13 5.28
2180 2213 1.797025 CTGGTTCTTCACGAAGACCC 58.203 55.000 14.62 14.62 46.49 4.46
2181 2214 1.149148 GCTGGTTCTTCACGAAGACC 58.851 55.000 8.99 13.14 46.13 3.85
2182 2215 2.062519 GAGCTGGTTCTTCACGAAGAC 58.937 52.381 8.99 5.22 46.13 3.01
2183 2216 1.964223 AGAGCTGGTTCTTCACGAAGA 59.036 47.619 5.38 5.38 44.94 2.87
2184 2217 2.447244 AGAGCTGGTTCTTCACGAAG 57.553 50.000 0.00 0.08 39.71 3.79
2185 2218 2.352814 GCTAGAGCTGGTTCTTCACGAA 60.353 50.000 0.00 0.00 38.21 3.85
2186 2219 1.202582 GCTAGAGCTGGTTCTTCACGA 59.797 52.381 0.00 0.00 38.21 4.35
2187 2220 1.067565 TGCTAGAGCTGGTTCTTCACG 60.068 52.381 2.72 0.00 42.66 4.35
2188 2221 2.342179 GTGCTAGAGCTGGTTCTTCAC 58.658 52.381 2.72 0.00 42.66 3.18
2189 2222 1.067565 CGTGCTAGAGCTGGTTCTTCA 60.068 52.381 2.72 0.00 42.66 3.02
2190 2223 1.067495 ACGTGCTAGAGCTGGTTCTTC 60.067 52.381 2.72 0.00 42.66 2.87
2191 2224 0.969894 ACGTGCTAGAGCTGGTTCTT 59.030 50.000 2.72 0.00 42.66 2.52
2192 2225 0.244994 CACGTGCTAGAGCTGGTTCT 59.755 55.000 0.82 0.00 42.66 3.01
2193 2226 1.355066 GCACGTGCTAGAGCTGGTTC 61.355 60.000 32.55 0.00 42.66 3.62
2194 2227 1.374758 GCACGTGCTAGAGCTGGTT 60.375 57.895 32.55 0.00 42.66 3.67
2195 2228 2.262915 GCACGTGCTAGAGCTGGT 59.737 61.111 32.55 0.00 42.66 4.00
2205 2238 3.035942 CAAAGTGTTTAAGAGCACGTGC 58.964 45.455 32.79 32.79 41.33 5.34
2206 2239 4.028383 CACAAAGTGTTTAAGAGCACGTG 58.972 43.478 12.28 12.28 41.33 4.49
2207 2240 3.936453 TCACAAAGTGTTTAAGAGCACGT 59.064 39.130 0.00 0.00 41.33 4.49
2208 2241 4.270084 TCTCACAAAGTGTTTAAGAGCACG 59.730 41.667 0.00 0.00 41.33 5.34
2209 2242 5.734855 TCTCACAAAGTGTTTAAGAGCAC 57.265 39.130 0.00 0.00 37.27 4.40
2210 2243 6.542005 TCATTCTCACAAAGTGTTTAAGAGCA 59.458 34.615 0.00 0.00 34.79 4.26
2211 2244 6.959361 TCATTCTCACAAAGTGTTTAAGAGC 58.041 36.000 0.00 0.00 34.79 4.09
2212 2245 9.443283 CTTTCATTCTCACAAAGTGTTTAAGAG 57.557 33.333 0.00 0.00 34.79 2.85
2213 2246 8.405531 CCTTTCATTCTCACAAAGTGTTTAAGA 58.594 33.333 0.00 0.00 34.79 2.10
2214 2247 8.190784 ACCTTTCATTCTCACAAAGTGTTTAAG 58.809 33.333 0.00 0.00 34.79 1.85
2215 2248 7.973388 CACCTTTCATTCTCACAAAGTGTTTAA 59.027 33.333 0.00 0.00 34.79 1.52
2216 2249 7.338196 TCACCTTTCATTCTCACAAAGTGTTTA 59.662 33.333 0.00 0.00 34.79 2.01
2217 2250 6.152661 TCACCTTTCATTCTCACAAAGTGTTT 59.847 34.615 0.00 0.00 34.79 2.83
2218 2251 5.652014 TCACCTTTCATTCTCACAAAGTGTT 59.348 36.000 0.00 0.00 34.79 3.32
2219 2252 5.192927 TCACCTTTCATTCTCACAAAGTGT 58.807 37.500 0.00 0.00 34.79 3.55
2220 2253 5.755813 CTCACCTTTCATTCTCACAAAGTG 58.244 41.667 0.00 0.00 34.45 3.16
2221 2254 4.276926 GCTCACCTTTCATTCTCACAAAGT 59.723 41.667 0.00 0.00 0.00 2.66
2222 2255 4.320788 GGCTCACCTTTCATTCTCACAAAG 60.321 45.833 0.00 0.00 0.00 2.77
2223 2256 3.569701 GGCTCACCTTTCATTCTCACAAA 59.430 43.478 0.00 0.00 0.00 2.83
2224 2257 3.149196 GGCTCACCTTTCATTCTCACAA 58.851 45.455 0.00 0.00 0.00 3.33
2225 2258 2.106338 TGGCTCACCTTTCATTCTCACA 59.894 45.455 0.00 0.00 36.63 3.58
2226 2259 2.485814 GTGGCTCACCTTTCATTCTCAC 59.514 50.000 0.00 0.00 36.63 3.51
2227 2260 2.106338 TGTGGCTCACCTTTCATTCTCA 59.894 45.455 3.33 0.00 36.63 3.27
2228 2261 2.783135 TGTGGCTCACCTTTCATTCTC 58.217 47.619 3.33 0.00 36.63 2.87
2229 2262 2.957402 TGTGGCTCACCTTTCATTCT 57.043 45.000 3.33 0.00 36.63 2.40
2230 2263 5.841957 ATTATGTGGCTCACCTTTCATTC 57.158 39.130 0.00 0.00 36.63 2.67
2231 2264 7.902920 ATTATTATGTGGCTCACCTTTCATT 57.097 32.000 0.00 0.00 36.63 2.57
2232 2265 8.995027 TTATTATTATGTGGCTCACCTTTCAT 57.005 30.769 0.00 0.00 36.63 2.57
2233 2266 8.815565 TTTATTATTATGTGGCTCACCTTTCA 57.184 30.769 0.00 0.00 36.63 2.69
2263 2296 9.990360 TGTACAATAGTTGATCAAAAGAGTGTA 57.010 29.630 10.35 14.04 0.00 2.90
2264 2297 8.902540 TGTACAATAGTTGATCAAAAGAGTGT 57.097 30.769 10.35 14.96 0.00 3.55
2265 2298 9.764870 CATGTACAATAGTTGATCAAAAGAGTG 57.235 33.333 10.35 10.08 0.00 3.51
2266 2299 9.507329 ACATGTACAATAGTTGATCAAAAGAGT 57.493 29.630 10.35 8.17 0.00 3.24
2271 2304 9.448438 AGCTAACATGTACAATAGTTGATCAAA 57.552 29.630 10.35 0.00 0.00 2.69
2282 2315 9.712305 GTCCATCTTATAGCTAACATGTACAAT 57.288 33.333 0.00 0.00 0.00 2.71
2283 2316 8.924303 AGTCCATCTTATAGCTAACATGTACAA 58.076 33.333 0.00 0.00 0.00 2.41
2284 2317 8.360390 CAGTCCATCTTATAGCTAACATGTACA 58.640 37.037 0.00 0.00 0.00 2.90
2285 2318 8.361139 ACAGTCCATCTTATAGCTAACATGTAC 58.639 37.037 0.00 0.00 0.00 2.90
2286 2319 8.478775 ACAGTCCATCTTATAGCTAACATGTA 57.521 34.615 0.00 0.00 0.00 2.29
2287 2320 7.366847 ACAGTCCATCTTATAGCTAACATGT 57.633 36.000 0.00 0.00 0.00 3.21
2293 2326 9.975218 TGTCATATACAGTCCATCTTATAGCTA 57.025 33.333 0.00 0.00 33.01 3.32
2294 2327 8.885693 TGTCATATACAGTCCATCTTATAGCT 57.114 34.615 0.00 0.00 33.01 3.32
2295 2328 9.526713 CATGTCATATACAGTCCATCTTATAGC 57.473 37.037 0.00 0.00 42.70 2.97
2297 2330 8.478066 GCCATGTCATATACAGTCCATCTTATA 58.522 37.037 0.00 0.00 42.70 0.98
2298 2331 7.038088 TGCCATGTCATATACAGTCCATCTTAT 60.038 37.037 0.00 0.00 42.70 1.73
2299 2332 6.269769 TGCCATGTCATATACAGTCCATCTTA 59.730 38.462 0.00 0.00 42.70 2.10
2300 2333 5.072193 TGCCATGTCATATACAGTCCATCTT 59.928 40.000 0.00 0.00 42.70 2.40
2301 2334 4.594491 TGCCATGTCATATACAGTCCATCT 59.406 41.667 0.00 0.00 42.70 2.90
2302 2335 4.692625 GTGCCATGTCATATACAGTCCATC 59.307 45.833 0.00 0.00 42.70 3.51
2303 2336 4.349048 AGTGCCATGTCATATACAGTCCAT 59.651 41.667 0.00 0.00 42.70 3.41
2304 2337 3.711190 AGTGCCATGTCATATACAGTCCA 59.289 43.478 0.00 0.00 42.70 4.02
2305 2338 4.060900 CAGTGCCATGTCATATACAGTCC 58.939 47.826 0.00 0.00 42.70 3.85
2306 2339 4.060900 CCAGTGCCATGTCATATACAGTC 58.939 47.826 0.00 0.00 42.70 3.51
2307 2340 3.745480 GCCAGTGCCATGTCATATACAGT 60.745 47.826 0.00 0.00 42.70 3.55
2308 2341 2.810274 GCCAGTGCCATGTCATATACAG 59.190 50.000 0.00 0.00 42.70 2.74
2309 2342 2.439135 AGCCAGTGCCATGTCATATACA 59.561 45.455 0.00 0.00 39.74 2.29
2310 2343 3.131709 AGCCAGTGCCATGTCATATAC 57.868 47.619 0.00 0.00 38.69 1.47
2311 2344 3.862877 AAGCCAGTGCCATGTCATATA 57.137 42.857 0.00 0.00 38.69 0.86
2312 2345 2.742428 AAGCCAGTGCCATGTCATAT 57.258 45.000 0.00 0.00 38.69 1.78
2313 2346 3.862877 ATAAGCCAGTGCCATGTCATA 57.137 42.857 0.00 0.00 38.69 2.15
2314 2347 2.742428 ATAAGCCAGTGCCATGTCAT 57.258 45.000 0.00 0.00 38.69 3.06
2315 2348 2.746142 GCTATAAGCCAGTGCCATGTCA 60.746 50.000 0.00 0.00 38.69 3.58
2316 2349 1.876156 GCTATAAGCCAGTGCCATGTC 59.124 52.381 0.00 0.00 38.69 3.06
2317 2350 1.972872 GCTATAAGCCAGTGCCATGT 58.027 50.000 0.00 0.00 38.69 3.21
2339 2372 4.894784 TGGTTAATAGTATAGCCAGCTGC 58.105 43.478 8.66 3.91 41.71 5.25
2340 2373 5.352569 GCATGGTTAATAGTATAGCCAGCTG 59.647 44.000 6.78 6.78 39.18 4.24
2341 2374 5.249393 AGCATGGTTAATAGTATAGCCAGCT 59.751 40.000 0.00 0.00 39.18 4.24
2342 2375 5.491982 AGCATGGTTAATAGTATAGCCAGC 58.508 41.667 0.00 8.73 39.18 4.85
2343 2376 6.940739 AGAGCATGGTTAATAGTATAGCCAG 58.059 40.000 0.00 2.11 39.18 4.85
2344 2377 6.496911 TGAGAGCATGGTTAATAGTATAGCCA 59.503 38.462 0.00 3.65 39.96 4.75
2345 2378 6.936279 TGAGAGCATGGTTAATAGTATAGCC 58.064 40.000 0.00 0.00 0.00 3.93
2346 2379 6.533367 GCTGAGAGCATGGTTAATAGTATAGC 59.467 42.308 0.00 0.00 41.89 2.97
2347 2380 7.038659 GGCTGAGAGCATGGTTAATAGTATAG 58.961 42.308 0.00 0.00 44.75 1.31
2348 2381 6.350194 CGGCTGAGAGCATGGTTAATAGTATA 60.350 42.308 0.00 0.00 44.75 1.47
2349 2382 5.567623 CGGCTGAGAGCATGGTTAATAGTAT 60.568 44.000 0.00 0.00 44.75 2.12
2350 2383 4.262036 CGGCTGAGAGCATGGTTAATAGTA 60.262 45.833 0.00 0.00 44.75 1.82
2351 2384 3.493350 CGGCTGAGAGCATGGTTAATAGT 60.493 47.826 0.00 0.00 44.75 2.12
2352 2385 3.062763 CGGCTGAGAGCATGGTTAATAG 58.937 50.000 0.00 0.00 44.75 1.73
2353 2386 2.434336 ACGGCTGAGAGCATGGTTAATA 59.566 45.455 0.00 0.00 44.75 0.98
2354 2387 1.210478 ACGGCTGAGAGCATGGTTAAT 59.790 47.619 0.00 0.00 44.75 1.40
2355 2388 0.613260 ACGGCTGAGAGCATGGTTAA 59.387 50.000 0.00 0.00 44.75 2.01
2356 2389 0.613260 AACGGCTGAGAGCATGGTTA 59.387 50.000 0.00 0.00 44.75 2.85
2357 2390 0.957395 CAACGGCTGAGAGCATGGTT 60.957 55.000 0.00 0.00 44.75 3.67
2358 2391 1.376424 CAACGGCTGAGAGCATGGT 60.376 57.895 0.00 0.00 44.75 3.55
2359 2392 2.110967 CCAACGGCTGAGAGCATGG 61.111 63.158 0.00 0.00 44.75 3.66
2360 2393 1.376424 ACCAACGGCTGAGAGCATG 60.376 57.895 0.00 0.00 44.75 4.06
2361 2394 1.376424 CACCAACGGCTGAGAGCAT 60.376 57.895 0.00 0.00 44.75 3.79
2362 2395 2.031012 CACCAACGGCTGAGAGCA 59.969 61.111 0.00 0.00 44.75 4.26
2363 2396 3.426568 GCACCAACGGCTGAGAGC 61.427 66.667 0.00 0.00 41.46 4.09
2364 2397 2.031012 TGCACCAACGGCTGAGAG 59.969 61.111 0.00 0.00 0.00 3.20
2365 2398 2.280797 GTGCACCAACGGCTGAGA 60.281 61.111 5.22 0.00 0.00 3.27
2366 2399 3.716006 CGTGCACCAACGGCTGAG 61.716 66.667 12.15 0.00 39.89 3.35
2417 2450 0.599991 GGCGGTTTCCTTTGCTTTGG 60.600 55.000 0.00 0.00 0.00 3.28
2465 2498 2.642807 AGTAAGCACTACCACCACCAAT 59.357 45.455 0.00 0.00 31.45 3.16
2604 2672 3.287222 AGAGCAAAAACACTTAGGTGCA 58.713 40.909 4.65 0.00 46.57 4.57
2631 2700 4.768448 GGGTTATCCTCCTTTTCGGAAAAA 59.232 41.667 15.99 2.61 42.53 1.94
2636 2705 1.474498 CGGGGTTATCCTCCTTTTCGG 60.474 57.143 0.00 0.00 35.33 4.30
2658 2727 3.217626 AGAGCAAAAACACTTCAGAGGG 58.782 45.455 0.00 0.00 0.00 4.30
2692 2761 2.117137 CGGTTTGAGGATCGATGTACG 58.883 52.381 0.54 0.00 38.61 3.67
2693 2762 3.114065 GACGGTTTGAGGATCGATGTAC 58.886 50.000 0.54 0.00 38.61 2.90
2694 2763 2.100252 GGACGGTTTGAGGATCGATGTA 59.900 50.000 0.54 0.00 38.61 2.29
2698 2767 1.509463 CGGACGGTTTGAGGATCGA 59.491 57.895 0.00 0.00 38.61 3.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.