Multiple sequence alignment - TraesCS1D01G191300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G191300 chr1D 100.000 4664 0 0 1 4664 265671994 265676657 0.000000e+00 8613.0
1 TraesCS1D01G191300 chr1D 94.595 148 6 1 1 146 472290641 472290788 1.310000e-55 228.0
2 TraesCS1D01G191300 chr1D 90.647 139 7 4 131 269 472290907 472291039 3.710000e-41 180.0
3 TraesCS1D01G191300 chr1D 79.518 249 26 13 23 266 190493507 190493735 2.250000e-33 154.0
4 TraesCS1D01G191300 chr1A 98.584 1695 22 1 2240 3934 324861193 324862885 0.000000e+00 2996.0
5 TraesCS1D01G191300 chr1A 97.721 1009 6 3 1063 2067 324857893 324858888 0.000000e+00 1720.0
6 TraesCS1D01G191300 chr1A 98.890 721 8 0 267 987 324856860 324857580 0.000000e+00 1288.0
7 TraesCS1D01G191300 chr1A 99.206 126 1 0 2087 2212 324861069 324861194 1.310000e-55 228.0
8 TraesCS1D01G191300 chr5B 91.485 916 56 16 2503 3409 7704875 7705777 0.000000e+00 1240.0
9 TraesCS1D01G191300 chr5B 91.806 659 48 2 335 987 7703512 7704170 0.000000e+00 913.0
10 TraesCS1D01G191300 chr5B 88.535 628 62 6 993 1619 7704253 7704871 0.000000e+00 752.0
11 TraesCS1D01G191300 chr5B 91.964 112 9 0 281 392 7703380 7703491 1.740000e-34 158.0
12 TraesCS1D01G191300 chr2B 96.448 732 20 3 3933 4664 23327052 23327777 0.000000e+00 1203.0
13 TraesCS1D01G191300 chr2B 82.474 97 8 9 3931 4022 105247388 105247480 5.000000e-10 76.8
14 TraesCS1D01G191300 chr7A 93.931 725 41 2 3933 4657 610346550 610347271 0.000000e+00 1092.0
15 TraesCS1D01G191300 chr6B 91.108 731 57 3 3934 4664 93386810 93387532 0.000000e+00 983.0
16 TraesCS1D01G191300 chr5D 89.688 737 65 10 3931 4664 68403556 68404284 0.000000e+00 929.0
17 TraesCS1D01G191300 chr5A 90.789 608 52 2 1037 1644 4950841 4951444 0.000000e+00 809.0
18 TraesCS1D01G191300 chr5A 90.160 376 21 6 2399 2765 4951440 4951808 4.220000e-130 475.0
19 TraesCS1D01G191300 chr5A 87.644 348 25 5 406 746 4944488 4944824 5.660000e-104 388.0
20 TraesCS1D01G191300 chr5A 93.416 243 14 1 740 982 4950046 4950286 4.440000e-95 359.0
21 TraesCS1D01G191300 chr5A 93.805 113 7 0 284 396 4943897 4944009 2.230000e-38 171.0
22 TraesCS1D01G191300 chr5A 89.286 84 7 2 24 105 673814111 673814194 2.300000e-18 104.0
23 TraesCS1D01G191300 chr1B 78.702 493 74 20 4177 4663 601177188 601176721 2.730000e-77 300.0
24 TraesCS1D01G191300 chr3B 80.814 344 51 9 4126 4465 815372452 815372784 5.990000e-64 255.0
25 TraesCS1D01G191300 chr3B 82.105 95 11 6 3934 4024 641530202 641530110 5.000000e-10 76.8
26 TraesCS1D01G191300 chr3B 91.304 46 2 2 3890 3934 139431715 139431759 1.400000e-05 62.1
27 TraesCS1D01G191300 chr4D 80.237 253 34 8 26 268 494359616 494359862 4.800000e-40 176.0
28 TraesCS1D01G191300 chr7B 81.579 114 14 6 3931 4039 648539013 648538902 2.310000e-13 87.9
29 TraesCS1D01G191300 chr7B 79.279 111 15 7 3931 4036 648565190 648565083 2.330000e-08 71.3
30 TraesCS1D01G191300 chr2D 83.516 91 10 5 3931 4019 510183371 510183284 3.870000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G191300 chr1D 265671994 265676657 4663 False 8613.000000 8613 100.00000 1 4664 1 chr1D.!!$F2 4663
1 TraesCS1D01G191300 chr1A 324856860 324862885 6025 False 1558.000000 2996 98.60025 267 3934 4 chr1A.!!$F1 3667
2 TraesCS1D01G191300 chr5B 7703380 7705777 2397 False 765.750000 1240 90.94750 281 3409 4 chr5B.!!$F1 3128
3 TraesCS1D01G191300 chr2B 23327052 23327777 725 False 1203.000000 1203 96.44800 3933 4664 1 chr2B.!!$F1 731
4 TraesCS1D01G191300 chr7A 610346550 610347271 721 False 1092.000000 1092 93.93100 3933 4657 1 chr7A.!!$F1 724
5 TraesCS1D01G191300 chr6B 93386810 93387532 722 False 983.000000 983 91.10800 3934 4664 1 chr6B.!!$F1 730
6 TraesCS1D01G191300 chr5D 68403556 68404284 728 False 929.000000 929 89.68800 3931 4664 1 chr5D.!!$F1 733
7 TraesCS1D01G191300 chr5A 4950046 4951808 1762 False 547.666667 809 91.45500 740 2765 3 chr5A.!!$F3 2025
8 TraesCS1D01G191300 chr5A 4943897 4944824 927 False 279.500000 388 90.72450 284 746 2 chr5A.!!$F2 462

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 174 0.036105 CCTGCACTCTGTACCATGCA 60.036 55.0 9.28 9.28 45.45 3.96 F
246 247 0.039437 ACGCGTCGTGAGAAATCAGT 60.039 50.0 13.68 0.00 45.01 3.41 F
1787 2852 0.108396 TGCACAGCTCAAAGGCACTA 59.892 50.0 0.00 0.00 38.49 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1034 1672 0.036010 CGGATTGTTGGAGGACAGCT 60.036 55.000 0.00 0.00 0.00 4.24 R
2088 3153 0.108709 CCGGCAACCCATGAAACATG 60.109 55.000 0.00 4.94 0.00 3.21 R
3707 6947 1.189446 GCGTCACTTTCACTGTGTACG 59.811 52.381 7.79 9.97 39.47 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.675029 CCCAACCGACGACGCCTT 62.675 66.667 0.64 0.00 38.29 4.35
28 29 2.259204 CCAACCGACGACGCCTTA 59.741 61.111 0.64 0.00 38.29 2.69
29 30 1.153706 CCAACCGACGACGCCTTAT 60.154 57.895 0.64 0.00 38.29 1.73
30 31 1.418342 CCAACCGACGACGCCTTATG 61.418 60.000 0.64 0.00 38.29 1.90
31 32 1.808390 AACCGACGACGCCTTATGC 60.808 57.895 0.64 0.00 38.29 3.14
46 47 6.750775 GCCTTATGCGAGTAGTACTTTAAG 57.249 41.667 0.00 9.40 0.00 1.85
47 48 6.271566 GCCTTATGCGAGTAGTACTTTAAGT 58.728 40.000 0.00 2.32 0.00 2.24
48 49 6.198591 GCCTTATGCGAGTAGTACTTTAAGTG 59.801 42.308 8.00 6.07 0.00 3.16
49 50 7.256286 CCTTATGCGAGTAGTACTTTAAGTGT 58.744 38.462 8.00 0.00 0.00 3.55
50 51 8.400947 CCTTATGCGAGTAGTACTTTAAGTGTA 58.599 37.037 8.00 0.00 0.00 2.90
51 52 9.435802 CTTATGCGAGTAGTACTTTAAGTGTAG 57.564 37.037 8.00 0.00 0.00 2.74
52 53 5.634896 TGCGAGTAGTACTTTAAGTGTAGC 58.365 41.667 8.00 4.62 0.00 3.58
53 54 5.181811 TGCGAGTAGTACTTTAAGTGTAGCA 59.818 40.000 8.00 6.93 0.00 3.49
54 55 6.088824 GCGAGTAGTACTTTAAGTGTAGCAA 58.911 40.000 8.00 0.00 0.00 3.91
55 56 6.250951 GCGAGTAGTACTTTAAGTGTAGCAAG 59.749 42.308 8.00 0.00 0.00 4.01
56 57 6.250951 CGAGTAGTACTTTAAGTGTAGCAAGC 59.749 42.308 8.00 0.00 0.00 4.01
57 58 6.396450 AGTAGTACTTTAAGTGTAGCAAGCC 58.604 40.000 8.00 0.00 0.00 4.35
58 59 5.223449 AGTACTTTAAGTGTAGCAAGCCA 57.777 39.130 8.00 0.00 0.00 4.75
59 60 5.238583 AGTACTTTAAGTGTAGCAAGCCAG 58.761 41.667 8.00 0.00 0.00 4.85
60 61 2.814336 ACTTTAAGTGTAGCAAGCCAGC 59.186 45.455 0.00 0.00 0.00 4.85
61 62 2.559698 TTAAGTGTAGCAAGCCAGCA 57.440 45.000 0.55 0.00 36.85 4.41
62 63 2.559698 TAAGTGTAGCAAGCCAGCAA 57.440 45.000 0.55 0.00 36.85 3.91
63 64 1.691196 AAGTGTAGCAAGCCAGCAAA 58.309 45.000 0.55 0.00 36.85 3.68
64 65 0.954452 AGTGTAGCAAGCCAGCAAAC 59.046 50.000 0.55 0.00 36.85 2.93
65 66 0.667993 GTGTAGCAAGCCAGCAAACA 59.332 50.000 0.55 2.07 36.85 2.83
66 67 0.667993 TGTAGCAAGCCAGCAAACAC 59.332 50.000 0.55 0.00 36.85 3.32
67 68 0.954452 GTAGCAAGCCAGCAAACACT 59.046 50.000 0.55 0.00 36.85 3.55
68 69 2.151202 GTAGCAAGCCAGCAAACACTA 58.849 47.619 0.55 0.00 36.85 2.74
69 70 1.242076 AGCAAGCCAGCAAACACTAG 58.758 50.000 0.55 0.00 36.85 2.57
70 71 0.387750 GCAAGCCAGCAAACACTAGC 60.388 55.000 0.00 0.00 0.00 3.42
71 72 0.953727 CAAGCCAGCAAACACTAGCA 59.046 50.000 0.00 0.00 0.00 3.49
72 73 1.337703 CAAGCCAGCAAACACTAGCAA 59.662 47.619 0.00 0.00 0.00 3.91
73 74 1.691196 AGCCAGCAAACACTAGCAAA 58.309 45.000 0.00 0.00 0.00 3.68
74 75 2.242043 AGCCAGCAAACACTAGCAAAT 58.758 42.857 0.00 0.00 0.00 2.32
75 76 2.229784 AGCCAGCAAACACTAGCAAATC 59.770 45.455 0.00 0.00 0.00 2.17
76 77 2.855180 CCAGCAAACACTAGCAAATCG 58.145 47.619 0.00 0.00 0.00 3.34
77 78 2.226437 CCAGCAAACACTAGCAAATCGT 59.774 45.455 0.00 0.00 0.00 3.73
78 79 3.228749 CAGCAAACACTAGCAAATCGTG 58.771 45.455 0.00 0.00 34.92 4.35
79 80 2.878406 AGCAAACACTAGCAAATCGTGT 59.122 40.909 0.00 0.00 43.14 4.49
80 81 2.973224 GCAAACACTAGCAAATCGTGTG 59.027 45.455 0.00 0.00 40.68 3.82
81 82 3.554524 CAAACACTAGCAAATCGTGTGG 58.445 45.455 0.00 0.00 40.68 4.17
82 83 2.831685 ACACTAGCAAATCGTGTGGA 57.168 45.000 0.00 0.00 40.11 4.02
83 84 3.120321 ACACTAGCAAATCGTGTGGAA 57.880 42.857 0.00 0.00 40.11 3.53
84 85 3.472652 ACACTAGCAAATCGTGTGGAAA 58.527 40.909 0.00 0.00 40.11 3.13
85 86 3.880490 ACACTAGCAAATCGTGTGGAAAA 59.120 39.130 0.00 0.00 40.11 2.29
86 87 4.024048 ACACTAGCAAATCGTGTGGAAAAG 60.024 41.667 0.00 0.00 40.11 2.27
87 88 4.213270 CACTAGCAAATCGTGTGGAAAAGA 59.787 41.667 0.00 0.00 0.00 2.52
88 89 4.819630 ACTAGCAAATCGTGTGGAAAAGAA 59.180 37.500 0.00 0.00 0.00 2.52
89 90 4.647424 AGCAAATCGTGTGGAAAAGAAA 57.353 36.364 0.00 0.00 0.00 2.52
90 91 4.359706 AGCAAATCGTGTGGAAAAGAAAC 58.640 39.130 0.00 0.00 0.00 2.78
91 92 4.109050 GCAAATCGTGTGGAAAAGAAACA 58.891 39.130 0.00 0.00 0.00 2.83
92 93 4.564769 GCAAATCGTGTGGAAAAGAAACAA 59.435 37.500 0.00 0.00 0.00 2.83
93 94 5.062809 GCAAATCGTGTGGAAAAGAAACAAA 59.937 36.000 0.00 0.00 0.00 2.83
94 95 6.695245 CAAATCGTGTGGAAAAGAAACAAAG 58.305 36.000 0.00 0.00 0.00 2.77
95 96 3.765026 TCGTGTGGAAAAGAAACAAAGC 58.235 40.909 0.00 0.00 0.00 3.51
96 97 2.857748 CGTGTGGAAAAGAAACAAAGCC 59.142 45.455 0.00 0.00 0.00 4.35
97 98 3.674682 CGTGTGGAAAAGAAACAAAGCCA 60.675 43.478 0.00 0.00 0.00 4.75
98 99 4.249661 GTGTGGAAAAGAAACAAAGCCAA 58.750 39.130 0.00 0.00 0.00 4.52
99 100 4.693095 GTGTGGAAAAGAAACAAAGCCAAA 59.307 37.500 0.00 0.00 0.00 3.28
100 101 5.180304 GTGTGGAAAAGAAACAAAGCCAAAA 59.820 36.000 0.00 0.00 0.00 2.44
101 102 5.411053 TGTGGAAAAGAAACAAAGCCAAAAG 59.589 36.000 0.00 0.00 0.00 2.27
102 103 5.641636 GTGGAAAAGAAACAAAGCCAAAAGA 59.358 36.000 0.00 0.00 0.00 2.52
103 104 6.148645 GTGGAAAAGAAACAAAGCCAAAAGAA 59.851 34.615 0.00 0.00 0.00 2.52
104 105 6.883756 TGGAAAAGAAACAAAGCCAAAAGAAT 59.116 30.769 0.00 0.00 0.00 2.40
105 106 7.148272 TGGAAAAGAAACAAAGCCAAAAGAATG 60.148 33.333 0.00 0.00 0.00 2.67
106 107 7.065683 GGAAAAGAAACAAAGCCAAAAGAATGA 59.934 33.333 0.00 0.00 0.00 2.57
107 108 6.908870 AAGAAACAAAGCCAAAAGAATGAC 57.091 33.333 0.00 0.00 0.00 3.06
108 109 5.043248 AGAAACAAAGCCAAAAGAATGACG 58.957 37.500 0.00 0.00 0.00 4.35
109 110 4.647424 AACAAAGCCAAAAGAATGACGA 57.353 36.364 0.00 0.00 0.00 4.20
110 111 4.647424 ACAAAGCCAAAAGAATGACGAA 57.353 36.364 0.00 0.00 0.00 3.85
111 112 5.004922 ACAAAGCCAAAAGAATGACGAAA 57.995 34.783 0.00 0.00 0.00 3.46
112 113 5.043248 ACAAAGCCAAAAGAATGACGAAAG 58.957 37.500 0.00 0.00 0.00 2.62
113 114 3.288809 AGCCAAAAGAATGACGAAAGC 57.711 42.857 0.00 0.00 0.00 3.51
114 115 2.887152 AGCCAAAAGAATGACGAAAGCT 59.113 40.909 0.00 0.00 0.00 3.74
115 116 3.319122 AGCCAAAAGAATGACGAAAGCTT 59.681 39.130 0.00 0.00 0.00 3.74
116 117 4.051237 GCCAAAAGAATGACGAAAGCTTT 58.949 39.130 12.53 12.53 0.00 3.51
117 118 4.084900 GCCAAAAGAATGACGAAAGCTTTG 60.085 41.667 18.30 11.41 0.00 2.77
118 119 5.043248 CCAAAAGAATGACGAAAGCTTTGT 58.957 37.500 18.30 14.60 0.00 2.83
119 120 5.519927 CCAAAAGAATGACGAAAGCTTTGTT 59.480 36.000 18.30 2.17 0.00 2.83
120 121 6.405216 CAAAAGAATGACGAAAGCTTTGTTG 58.595 36.000 18.30 8.72 0.00 3.33
121 122 4.228912 AGAATGACGAAAGCTTTGTTGG 57.771 40.909 18.30 5.56 0.00 3.77
122 123 3.004734 AGAATGACGAAAGCTTTGTTGGG 59.995 43.478 18.30 3.02 0.00 4.12
123 124 2.045561 TGACGAAAGCTTTGTTGGGA 57.954 45.000 18.30 0.00 0.00 4.37
124 125 1.673920 TGACGAAAGCTTTGTTGGGAC 59.326 47.619 18.30 0.00 0.00 4.46
125 126 1.001706 GACGAAAGCTTTGTTGGGACC 60.002 52.381 18.30 0.00 0.00 4.46
126 127 0.313987 CGAAAGCTTTGTTGGGACCC 59.686 55.000 18.30 2.45 0.00 4.46
127 128 1.408969 GAAAGCTTTGTTGGGACCCA 58.591 50.000 18.30 9.95 0.00 4.51
128 129 1.068588 GAAAGCTTTGTTGGGACCCAC 59.931 52.381 18.30 9.44 30.78 4.61
129 130 0.759060 AAGCTTTGTTGGGACCCACC 60.759 55.000 14.59 7.00 30.78 4.61
130 131 1.456705 GCTTTGTTGGGACCCACCA 60.457 57.895 14.59 10.45 41.20 4.17
131 132 1.744320 GCTTTGTTGGGACCCACCAC 61.744 60.000 14.59 10.86 41.03 4.16
132 133 0.396417 CTTTGTTGGGACCCACCACA 60.396 55.000 14.59 13.76 41.03 4.17
133 134 0.263172 TTTGTTGGGACCCACCACAT 59.737 50.000 14.59 0.00 41.03 3.21
134 135 0.468958 TTGTTGGGACCCACCACATG 60.469 55.000 14.59 0.00 41.03 3.21
135 136 2.117206 TTGGGACCCACCACATGC 59.883 61.111 14.59 0.00 41.03 4.06
136 137 2.772423 TTGGGACCCACCACATGCA 61.772 57.895 14.59 0.00 41.03 3.96
137 138 2.117206 GGGACCCACCACATGCAA 59.883 61.111 5.33 0.00 41.20 4.08
138 139 1.532794 GGGACCCACCACATGCAAA 60.533 57.895 5.33 0.00 41.20 3.68
139 140 1.535204 GGGACCCACCACATGCAAAG 61.535 60.000 5.33 0.00 41.20 2.77
140 141 0.539438 GGACCCACCACATGCAAAGA 60.539 55.000 0.00 0.00 38.79 2.52
141 142 0.598065 GACCCACCACATGCAAAGAC 59.402 55.000 0.00 0.00 0.00 3.01
142 143 1.172180 ACCCACCACATGCAAAGACG 61.172 55.000 0.00 0.00 0.00 4.18
143 144 1.081242 CCACCACATGCAAAGACGC 60.081 57.895 0.00 0.00 0.00 5.19
145 146 0.661187 CACCACATGCAAAGACGCAC 60.661 55.000 0.00 0.00 46.56 5.34
146 147 1.100463 ACCACATGCAAAGACGCACA 61.100 50.000 0.00 0.00 46.56 4.57
147 148 0.386352 CCACATGCAAAGACGCACAG 60.386 55.000 0.00 0.00 46.56 3.66
148 149 1.000233 CACATGCAAAGACGCACAGC 61.000 55.000 0.00 0.00 46.56 4.40
168 169 1.975327 TGCTCCTGCACTCTGTACC 59.025 57.895 0.00 0.00 45.31 3.34
169 170 0.831711 TGCTCCTGCACTCTGTACCA 60.832 55.000 0.00 0.00 45.31 3.25
170 171 0.539051 GCTCCTGCACTCTGTACCAT 59.461 55.000 0.00 0.00 39.41 3.55
171 172 1.741732 GCTCCTGCACTCTGTACCATG 60.742 57.143 0.00 0.00 39.41 3.66
172 173 0.250234 TCCTGCACTCTGTACCATGC 59.750 55.000 0.00 0.00 38.59 4.06
173 174 0.036105 CCTGCACTCTGTACCATGCA 60.036 55.000 9.28 9.28 45.45 3.96
174 175 1.081892 CTGCACTCTGTACCATGCAC 58.918 55.000 6.39 0.00 42.92 4.57
175 176 0.670239 TGCACTCTGTACCATGCACG 60.670 55.000 6.39 0.00 42.92 5.34
176 177 0.389817 GCACTCTGTACCATGCACGA 60.390 55.000 0.00 0.00 38.00 4.35
177 178 1.350193 CACTCTGTACCATGCACGAC 58.650 55.000 0.00 0.00 0.00 4.34
178 179 1.067565 CACTCTGTACCATGCACGACT 60.068 52.381 0.00 0.00 0.00 4.18
179 180 1.067565 ACTCTGTACCATGCACGACTG 60.068 52.381 0.00 0.00 0.00 3.51
180 181 0.966179 TCTGTACCATGCACGACTGT 59.034 50.000 0.00 0.00 0.00 3.55
181 182 2.163613 CTCTGTACCATGCACGACTGTA 59.836 50.000 0.00 0.00 0.00 2.74
182 183 2.163613 TCTGTACCATGCACGACTGTAG 59.836 50.000 0.00 0.00 0.00 2.74
183 184 1.203758 TGTACCATGCACGACTGTAGG 59.796 52.381 0.00 0.00 0.00 3.18
184 185 1.475280 GTACCATGCACGACTGTAGGA 59.525 52.381 0.00 0.00 0.00 2.94
185 186 0.973632 ACCATGCACGACTGTAGGAA 59.026 50.000 0.00 0.00 0.00 3.36
186 187 1.337823 ACCATGCACGACTGTAGGAAC 60.338 52.381 0.00 0.00 0.00 3.62
187 188 1.337728 CCATGCACGACTGTAGGAACA 60.338 52.381 0.00 0.00 0.00 3.18
188 189 2.412870 CATGCACGACTGTAGGAACAA 58.587 47.619 0.00 0.00 34.49 2.83
189 190 2.148916 TGCACGACTGTAGGAACAAG 57.851 50.000 0.00 0.00 34.49 3.16
190 191 1.411246 TGCACGACTGTAGGAACAAGT 59.589 47.619 0.00 0.00 34.49 3.16
191 192 2.159014 TGCACGACTGTAGGAACAAGTT 60.159 45.455 0.00 0.00 34.49 2.66
192 193 2.221055 GCACGACTGTAGGAACAAGTTG 59.779 50.000 0.00 0.00 34.49 3.16
193 194 3.713288 CACGACTGTAGGAACAAGTTGA 58.287 45.455 10.54 0.00 34.49 3.18
194 195 4.307432 CACGACTGTAGGAACAAGTTGAT 58.693 43.478 10.54 0.00 34.49 2.57
195 196 4.386049 CACGACTGTAGGAACAAGTTGATC 59.614 45.833 10.54 7.28 34.49 2.92
196 197 4.281182 ACGACTGTAGGAACAAGTTGATCT 59.719 41.667 10.54 6.28 34.49 2.75
197 198 4.623167 CGACTGTAGGAACAAGTTGATCTG 59.377 45.833 10.54 0.56 34.49 2.90
198 199 4.319177 ACTGTAGGAACAAGTTGATCTGC 58.681 43.478 10.54 7.74 34.49 4.26
199 200 4.040952 ACTGTAGGAACAAGTTGATCTGCT 59.959 41.667 10.54 6.74 34.49 4.24
200 201 5.246203 ACTGTAGGAACAAGTTGATCTGCTA 59.754 40.000 10.54 5.79 34.49 3.49
201 202 6.070538 ACTGTAGGAACAAGTTGATCTGCTAT 60.071 38.462 10.54 0.00 34.49 2.97
202 203 7.124298 ACTGTAGGAACAAGTTGATCTGCTATA 59.876 37.037 10.54 6.13 34.49 1.31
203 204 7.847096 TGTAGGAACAAGTTGATCTGCTATAA 58.153 34.615 10.54 0.08 30.91 0.98
204 205 8.486210 TGTAGGAACAAGTTGATCTGCTATAAT 58.514 33.333 10.54 0.00 30.91 1.28
205 206 8.983724 GTAGGAACAAGTTGATCTGCTATAATC 58.016 37.037 10.54 0.00 0.00 1.75
206 207 6.703607 AGGAACAAGTTGATCTGCTATAATCG 59.296 38.462 10.54 0.00 0.00 3.34
207 208 6.073548 GGAACAAGTTGATCTGCTATAATCGG 60.074 42.308 10.54 0.00 0.00 4.18
208 209 6.161855 ACAAGTTGATCTGCTATAATCGGA 57.838 37.500 10.54 0.00 0.00 4.55
209 210 5.986135 ACAAGTTGATCTGCTATAATCGGAC 59.014 40.000 10.54 0.00 0.00 4.79
210 211 4.799678 AGTTGATCTGCTATAATCGGACG 58.200 43.478 0.00 0.00 0.00 4.79
211 212 3.850122 TGATCTGCTATAATCGGACGG 57.150 47.619 0.00 0.00 0.00 4.79
212 213 3.154710 TGATCTGCTATAATCGGACGGT 58.845 45.455 0.00 0.00 0.00 4.83
213 214 3.057526 TGATCTGCTATAATCGGACGGTG 60.058 47.826 0.00 0.00 0.00 4.94
214 215 1.000607 TCTGCTATAATCGGACGGTGC 60.001 52.381 0.00 0.00 0.00 5.01
215 216 0.747852 TGCTATAATCGGACGGTGCA 59.252 50.000 0.00 0.00 0.00 4.57
216 217 1.269569 TGCTATAATCGGACGGTGCAG 60.270 52.381 0.00 0.00 0.00 4.41
217 218 1.419374 CTATAATCGGACGGTGCAGC 58.581 55.000 5.64 5.64 0.00 5.25
218 219 0.747852 TATAATCGGACGGTGCAGCA 59.252 50.000 17.33 0.00 0.00 4.41
219 220 0.810031 ATAATCGGACGGTGCAGCAC 60.810 55.000 17.97 17.97 0.00 4.40
227 228 3.350612 GGTGCAGCACGCGGTTTA 61.351 61.111 19.42 0.00 46.97 2.01
228 229 2.127383 GTGCAGCACGCGGTTTAC 60.127 61.111 10.47 0.00 46.97 2.01
229 230 3.707700 TGCAGCACGCGGTTTACG 61.708 61.111 12.47 0.00 46.97 3.18
238 239 3.058351 CGGTTTACGCGTCGTGAG 58.942 61.111 18.63 1.64 41.39 3.51
239 240 1.440850 CGGTTTACGCGTCGTGAGA 60.441 57.895 18.63 0.00 41.39 3.27
240 241 0.998226 CGGTTTACGCGTCGTGAGAA 60.998 55.000 18.63 0.00 41.39 2.87
241 242 1.130955 GGTTTACGCGTCGTGAGAAA 58.869 50.000 18.63 6.80 45.01 2.52
242 243 1.723003 GGTTTACGCGTCGTGAGAAAT 59.277 47.619 18.63 0.00 45.01 2.17
243 244 2.222442 GGTTTACGCGTCGTGAGAAATC 60.222 50.000 18.63 6.18 45.01 2.17
244 245 2.334971 TTACGCGTCGTGAGAAATCA 57.665 45.000 18.63 0.00 45.01 2.57
245 246 1.891178 TACGCGTCGTGAGAAATCAG 58.109 50.000 18.63 0.00 45.01 2.90
246 247 0.039437 ACGCGTCGTGAGAAATCAGT 60.039 50.000 13.68 0.00 45.01 3.41
247 248 0.635731 CGCGTCGTGAGAAATCAGTC 59.364 55.000 0.00 0.00 45.01 3.51
248 249 0.635731 GCGTCGTGAGAAATCAGTCG 59.364 55.000 0.00 0.00 45.01 4.18
249 250 1.260206 CGTCGTGAGAAATCAGTCGG 58.740 55.000 0.00 0.00 45.01 4.79
250 251 1.630148 GTCGTGAGAAATCAGTCGGG 58.370 55.000 0.00 0.00 45.01 5.14
251 252 0.530744 TCGTGAGAAATCAGTCGGGG 59.469 55.000 0.00 0.00 37.03 5.73
252 253 0.460284 CGTGAGAAATCAGTCGGGGG 60.460 60.000 0.00 0.00 0.00 5.40
253 254 0.902531 GTGAGAAATCAGTCGGGGGA 59.097 55.000 0.00 0.00 0.00 4.81
254 255 1.278127 GTGAGAAATCAGTCGGGGGAA 59.722 52.381 0.00 0.00 0.00 3.97
255 256 1.982226 TGAGAAATCAGTCGGGGGAAA 59.018 47.619 0.00 0.00 0.00 3.13
256 257 2.373836 TGAGAAATCAGTCGGGGGAAAA 59.626 45.455 0.00 0.00 0.00 2.29
257 258 3.010138 TGAGAAATCAGTCGGGGGAAAAT 59.990 43.478 0.00 0.00 0.00 1.82
258 259 4.226394 TGAGAAATCAGTCGGGGGAAAATA 59.774 41.667 0.00 0.00 0.00 1.40
259 260 5.187621 AGAAATCAGTCGGGGGAAAATAA 57.812 39.130 0.00 0.00 0.00 1.40
260 261 5.576128 AGAAATCAGTCGGGGGAAAATAAA 58.424 37.500 0.00 0.00 0.00 1.40
261 262 5.417894 AGAAATCAGTCGGGGGAAAATAAAC 59.582 40.000 0.00 0.00 0.00 2.01
262 263 2.702261 TCAGTCGGGGGAAAATAAACG 58.298 47.619 0.00 0.00 0.00 3.60
263 264 2.038820 TCAGTCGGGGGAAAATAAACGT 59.961 45.455 0.00 0.00 0.00 3.99
264 265 2.815503 CAGTCGGGGGAAAATAAACGTT 59.184 45.455 0.00 0.00 0.00 3.99
265 266 3.253921 CAGTCGGGGGAAAATAAACGTTT 59.746 43.478 18.90 18.90 0.00 3.60
987 1548 0.745845 ATGTTCCCGCATGTCTCTGC 60.746 55.000 0.00 0.00 38.81 4.26
988 1549 1.078848 GTTCCCGCATGTCTCTGCT 60.079 57.895 0.00 0.00 40.06 4.24
989 1550 0.674895 GTTCCCGCATGTCTCTGCTT 60.675 55.000 0.00 0.00 40.06 3.91
990 1551 0.901827 TTCCCGCATGTCTCTGCTTA 59.098 50.000 0.00 0.00 40.06 3.09
991 1552 0.901827 TCCCGCATGTCTCTGCTTAA 59.098 50.000 0.00 0.00 40.06 1.85
1007 1645 1.869767 CTTAAGCAGATCCATGGCGAC 59.130 52.381 6.96 0.41 0.00 5.19
1034 1672 1.296392 CCCGAGTCAGCATGTGGAA 59.704 57.895 0.00 0.00 37.40 3.53
1058 2119 1.189524 TCCTCCAACAATCCGTCGGT 61.190 55.000 11.88 0.00 0.00 4.69
1712 2777 1.201880 ACGAGGTTCTTCGCTAAGACC 59.798 52.381 0.00 5.95 41.48 3.85
1787 2852 0.108396 TGCACAGCTCAAAGGCACTA 59.892 50.000 0.00 0.00 38.49 2.74
1792 2857 4.096984 GCACAGCTCAAAGGCACTAATTAT 59.903 41.667 0.00 0.00 38.49 1.28
1793 2858 5.296780 GCACAGCTCAAAGGCACTAATTATA 59.703 40.000 0.00 0.00 38.49 0.98
1794 2859 6.016777 GCACAGCTCAAAGGCACTAATTATAT 60.017 38.462 0.00 0.00 38.49 0.86
1795 2860 7.469181 GCACAGCTCAAAGGCACTAATTATATT 60.469 37.037 0.00 0.00 38.49 1.28
1796 2861 8.072567 CACAGCTCAAAGGCACTAATTATATTC 58.927 37.037 0.00 0.00 38.49 1.75
1797 2862 7.775093 ACAGCTCAAAGGCACTAATTATATTCA 59.225 33.333 0.00 0.00 38.49 2.57
1798 2863 8.790718 CAGCTCAAAGGCACTAATTATATTCAT 58.209 33.333 0.00 0.00 38.49 2.57
1799 2864 8.790718 AGCTCAAAGGCACTAATTATATTCATG 58.209 33.333 0.00 0.00 38.49 3.07
1800 2865 8.571336 GCTCAAAGGCACTAATTATATTCATGT 58.429 33.333 0.00 0.00 38.49 3.21
1801 2866 9.888878 CTCAAAGGCACTAATTATATTCATGTG 57.111 33.333 0.00 0.00 38.49 3.21
1802 2867 9.407380 TCAAAGGCACTAATTATATTCATGTGT 57.593 29.630 0.00 0.00 38.49 3.72
1803 2868 9.669353 CAAAGGCACTAATTATATTCATGTGTC 57.331 33.333 0.00 0.00 38.49 3.67
1923 2988 3.855858 TGTTTTCTTGCTGGAAACAACC 58.144 40.909 12.32 0.00 42.06 3.77
2067 3132 6.272318 CAAGCAAGGAATTGTACAAAGTTGA 58.728 36.000 13.23 0.00 0.00 3.18
2068 3133 5.831997 AGCAAGGAATTGTACAAAGTTGAC 58.168 37.500 13.23 9.54 0.00 3.18
2069 3134 5.594317 AGCAAGGAATTGTACAAAGTTGACT 59.406 36.000 13.23 11.22 0.00 3.41
2070 3135 6.096846 AGCAAGGAATTGTACAAAGTTGACTT 59.903 34.615 13.23 8.58 37.91 3.01
2071 3136 6.756542 GCAAGGAATTGTACAAAGTTGACTTT 59.243 34.615 13.23 3.37 46.23 2.66
2210 5436 4.810184 GGCCCTCGGACCCCCTTA 62.810 72.222 0.00 0.00 0.00 2.69
2211 5437 3.477346 GCCCTCGGACCCCCTTAC 61.477 72.222 0.00 0.00 0.00 2.34
2212 5438 2.767073 CCCTCGGACCCCCTTACC 60.767 72.222 0.00 0.00 0.00 2.85
2213 5439 2.367378 CCTCGGACCCCCTTACCT 59.633 66.667 0.00 0.00 0.00 3.08
2214 5440 1.306739 CCTCGGACCCCCTTACCTT 60.307 63.158 0.00 0.00 0.00 3.50
2215 5441 0.031817 CCTCGGACCCCCTTACCTTA 60.032 60.000 0.00 0.00 0.00 2.69
2216 5442 1.623279 CCTCGGACCCCCTTACCTTAA 60.623 57.143 0.00 0.00 0.00 1.85
2217 5443 2.405559 CTCGGACCCCCTTACCTTAAT 58.594 52.381 0.00 0.00 0.00 1.40
2218 5444 2.775960 CTCGGACCCCCTTACCTTAATT 59.224 50.000 0.00 0.00 0.00 1.40
2219 5445 3.969312 CTCGGACCCCCTTACCTTAATTA 59.031 47.826 0.00 0.00 0.00 1.40
2220 5446 4.569902 TCGGACCCCCTTACCTTAATTAT 58.430 43.478 0.00 0.00 0.00 1.28
2221 5447 4.594491 TCGGACCCCCTTACCTTAATTATC 59.406 45.833 0.00 0.00 0.00 1.75
2222 5448 4.263199 CGGACCCCCTTACCTTAATTATCC 60.263 50.000 0.00 0.00 0.00 2.59
2223 5449 4.263199 GGACCCCCTTACCTTAATTATCCG 60.263 50.000 0.00 0.00 0.00 4.18
2224 5450 3.654321 ACCCCCTTACCTTAATTATCCGG 59.346 47.826 0.00 0.00 0.00 5.14
2225 5451 3.911894 CCCCCTTACCTTAATTATCCGGA 59.088 47.826 6.61 6.61 0.00 5.14
2226 5452 4.351704 CCCCCTTACCTTAATTATCCGGAA 59.648 45.833 9.01 0.00 0.00 4.30
2227 5453 5.163066 CCCCCTTACCTTAATTATCCGGAAA 60.163 44.000 9.01 4.74 0.00 3.13
2228 5454 6.002082 CCCCTTACCTTAATTATCCGGAAAG 58.998 44.000 9.01 7.10 0.00 2.62
2229 5455 6.183361 CCCCTTACCTTAATTATCCGGAAAGA 60.183 42.308 9.01 0.00 0.00 2.52
2230 5456 6.935208 CCCTTACCTTAATTATCCGGAAAGAG 59.065 42.308 9.01 4.16 0.00 2.85
2231 5457 7.202066 CCCTTACCTTAATTATCCGGAAAGAGA 60.202 40.741 9.01 0.00 0.00 3.10
2232 5458 7.873505 CCTTACCTTAATTATCCGGAAAGAGAG 59.126 40.741 9.01 2.55 0.00 3.20
2233 5459 6.809976 ACCTTAATTATCCGGAAAGAGAGT 57.190 37.500 9.01 0.00 0.00 3.24
2234 5460 7.196637 ACCTTAATTATCCGGAAAGAGAGTT 57.803 36.000 9.01 0.00 0.00 3.01
2235 5461 7.048512 ACCTTAATTATCCGGAAAGAGAGTTG 58.951 38.462 9.01 0.00 0.00 3.16
2236 5462 6.483640 CCTTAATTATCCGGAAAGAGAGTTGG 59.516 42.308 9.01 0.00 0.00 3.77
2237 5463 5.693769 AATTATCCGGAAAGAGAGTTGGA 57.306 39.130 9.01 0.00 0.00 3.53
2238 5464 4.737855 TTATCCGGAAAGAGAGTTGGAG 57.262 45.455 9.01 0.00 0.00 3.86
2260 5486 7.093289 TGGAGACAACAAACCTTGGAATTTTTA 60.093 33.333 0.00 0.00 37.44 1.52
2295 5521 3.173965 AGGCCTAGCTTCACAAGACTTA 58.826 45.455 1.29 0.00 0.00 2.24
2406 5632 5.805728 ACCCTAACATTCTTAGACCAACAG 58.194 41.667 0.00 0.00 0.00 3.16
2521 5752 9.185192 GTTTCTATTGAACTAATAATGCATGCC 57.815 33.333 16.68 0.00 31.12 4.40
2864 6099 1.520342 GGCCTGATGAGTCTCACGC 60.520 63.158 4.21 4.73 0.00 5.34
3003 6238 7.081976 GGCGTTACTCTAAAACATCAATTTGT 58.918 34.615 0.00 0.00 0.00 2.83
3253 6493 5.475220 TGAAGAAGACGAAGATCACTCTCTT 59.525 40.000 0.00 3.05 38.18 2.85
3443 6683 4.156455 GTGACCACCATCCATCACTTAT 57.844 45.455 0.00 0.00 38.72 1.73
3707 6947 1.443194 CTGCCTCATTGCAACACGC 60.443 57.895 0.00 1.66 41.51 5.34
3718 6958 1.484227 GCAACACGCGTACACAGTGA 61.484 55.000 13.44 0.00 39.04 3.41
3906 7146 0.841289 AAAGGGTCCGACCACTTTGA 59.159 50.000 22.93 0.00 41.02 2.69
3914 7154 4.868734 GGTCCGACCACTTTGAGTTTATAG 59.131 45.833 13.05 0.00 38.42 1.31
3918 7158 5.514204 CCGACCACTTTGAGTTTATAGTACG 59.486 44.000 0.00 0.00 0.00 3.67
3923 7163 5.577164 CACTTTGAGTTTATAGTACGCAGCT 59.423 40.000 0.00 0.00 0.00 4.24
3929 7169 5.341617 AGTTTATAGTACGCAGCTGTTCTC 58.658 41.667 16.64 4.40 0.00 2.87
4009 7249 9.864034 AACGATCAGATTTTGCTTAAATATACG 57.136 29.630 0.00 0.00 36.59 3.06
4062 7302 9.499585 CATAAACTTTCTCAATATTGCTCAGTG 57.500 33.333 10.76 2.35 0.00 3.66
4435 7675 8.370182 ACTAATAAAAGAAACGTTCCTCTACCA 58.630 33.333 0.00 0.00 0.00 3.25
4452 7692 6.488769 TCTACCAAACAAAGTGTAGAGGAA 57.511 37.500 0.00 0.00 35.88 3.36
4517 7757 4.708726 AATGTACAAGCCTTCATCTTGC 57.291 40.909 0.00 0.00 43.40 4.01
4572 7812 8.160765 TGACCAGATTAGTAAATTCAACCAAGA 58.839 33.333 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.567564 ATAAGGCGTCGTCGGTTGGG 62.568 60.000 3.90 0.00 37.56 4.12
11 12 1.153706 ATAAGGCGTCGTCGGTTGG 60.154 57.895 3.90 0.00 37.56 3.77
12 13 1.995991 CATAAGGCGTCGTCGGTTG 59.004 57.895 3.90 0.00 37.56 3.77
13 14 1.808390 GCATAAGGCGTCGTCGGTT 60.808 57.895 3.90 0.00 37.56 4.44
14 15 2.202703 GCATAAGGCGTCGTCGGT 60.203 61.111 3.90 0.00 37.56 4.69
23 24 6.198591 CACTTAAAGTACTACTCGCATAAGGC 59.801 42.308 0.00 0.00 39.90 4.35
24 25 7.256286 ACACTTAAAGTACTACTCGCATAAGG 58.744 38.462 0.00 0.00 0.00 2.69
25 26 9.435802 CTACACTTAAAGTACTACTCGCATAAG 57.564 37.037 0.00 0.42 0.00 1.73
26 27 7.912250 GCTACACTTAAAGTACTACTCGCATAA 59.088 37.037 0.00 0.00 0.00 1.90
27 28 7.066163 TGCTACACTTAAAGTACTACTCGCATA 59.934 37.037 0.00 0.00 0.00 3.14
28 29 6.127814 TGCTACACTTAAAGTACTACTCGCAT 60.128 38.462 0.00 0.00 0.00 4.73
29 30 5.181811 TGCTACACTTAAAGTACTACTCGCA 59.818 40.000 0.00 0.00 0.00 5.10
30 31 5.634896 TGCTACACTTAAAGTACTACTCGC 58.365 41.667 0.00 0.00 0.00 5.03
31 32 6.250951 GCTTGCTACACTTAAAGTACTACTCG 59.749 42.308 0.00 0.00 0.00 4.18
32 33 6.530887 GGCTTGCTACACTTAAAGTACTACTC 59.469 42.308 0.00 0.00 0.00 2.59
33 34 6.014840 TGGCTTGCTACACTTAAAGTACTACT 60.015 38.462 0.00 0.00 0.00 2.57
34 35 6.161381 TGGCTTGCTACACTTAAAGTACTAC 58.839 40.000 0.00 0.00 0.00 2.73
35 36 6.349243 TGGCTTGCTACACTTAAAGTACTA 57.651 37.500 0.00 0.00 0.00 1.82
36 37 5.223449 TGGCTTGCTACACTTAAAGTACT 57.777 39.130 0.00 0.00 0.00 2.73
37 38 4.142881 GCTGGCTTGCTACACTTAAAGTAC 60.143 45.833 0.00 0.00 0.00 2.73
38 39 4.000988 GCTGGCTTGCTACACTTAAAGTA 58.999 43.478 0.00 0.00 0.00 2.24
39 40 2.814336 GCTGGCTTGCTACACTTAAAGT 59.186 45.455 0.00 0.00 0.00 2.66
40 41 2.813754 TGCTGGCTTGCTACACTTAAAG 59.186 45.455 4.89 0.00 0.00 1.85
41 42 2.857483 TGCTGGCTTGCTACACTTAAA 58.143 42.857 4.89 0.00 0.00 1.52
42 43 2.559698 TGCTGGCTTGCTACACTTAA 57.440 45.000 4.89 0.00 0.00 1.85
43 44 2.552315 GTTTGCTGGCTTGCTACACTTA 59.448 45.455 4.89 0.00 0.00 2.24
44 45 1.338020 GTTTGCTGGCTTGCTACACTT 59.662 47.619 4.89 0.00 0.00 3.16
45 46 0.954452 GTTTGCTGGCTTGCTACACT 59.046 50.000 4.89 0.00 0.00 3.55
46 47 0.667993 TGTTTGCTGGCTTGCTACAC 59.332 50.000 4.89 0.71 0.00 2.90
47 48 0.667993 GTGTTTGCTGGCTTGCTACA 59.332 50.000 4.89 6.20 0.00 2.74
48 49 0.954452 AGTGTTTGCTGGCTTGCTAC 59.046 50.000 4.89 4.15 0.00 3.58
49 50 2.426522 CTAGTGTTTGCTGGCTTGCTA 58.573 47.619 4.89 0.00 0.00 3.49
50 51 1.242076 CTAGTGTTTGCTGGCTTGCT 58.758 50.000 4.89 0.00 0.00 3.91
51 52 0.387750 GCTAGTGTTTGCTGGCTTGC 60.388 55.000 0.00 0.00 39.45 4.01
52 53 0.953727 TGCTAGTGTTTGCTGGCTTG 59.046 50.000 3.36 0.00 42.42 4.01
53 54 1.691196 TTGCTAGTGTTTGCTGGCTT 58.309 45.000 3.36 0.00 42.42 4.35
54 55 1.691196 TTTGCTAGTGTTTGCTGGCT 58.309 45.000 3.36 0.00 42.42 4.75
55 56 2.599659 GATTTGCTAGTGTTTGCTGGC 58.400 47.619 0.00 0.00 42.31 4.85
56 57 2.226437 ACGATTTGCTAGTGTTTGCTGG 59.774 45.455 0.00 0.00 0.00 4.85
57 58 3.228749 CACGATTTGCTAGTGTTTGCTG 58.771 45.455 0.00 0.00 0.00 4.41
58 59 2.878406 ACACGATTTGCTAGTGTTTGCT 59.122 40.909 0.00 0.00 45.60 3.91
59 60 2.973224 CACACGATTTGCTAGTGTTTGC 59.027 45.455 0.00 0.00 45.60 3.68
60 61 3.249799 TCCACACGATTTGCTAGTGTTTG 59.750 43.478 0.00 0.00 45.60 2.93
61 62 3.472652 TCCACACGATTTGCTAGTGTTT 58.527 40.909 0.00 0.00 45.60 2.83
62 63 3.120321 TCCACACGATTTGCTAGTGTT 57.880 42.857 0.00 0.00 45.60 3.32
64 65 4.213270 TCTTTTCCACACGATTTGCTAGTG 59.787 41.667 0.00 0.00 41.28 2.74
65 66 4.385825 TCTTTTCCACACGATTTGCTAGT 58.614 39.130 0.00 0.00 0.00 2.57
66 67 5.356882 TTCTTTTCCACACGATTTGCTAG 57.643 39.130 0.00 0.00 0.00 3.42
67 68 5.066634 TGTTTCTTTTCCACACGATTTGCTA 59.933 36.000 0.00 0.00 0.00 3.49
68 69 4.142271 TGTTTCTTTTCCACACGATTTGCT 60.142 37.500 0.00 0.00 0.00 3.91
69 70 4.109050 TGTTTCTTTTCCACACGATTTGC 58.891 39.130 0.00 0.00 0.00 3.68
70 71 6.639671 TTTGTTTCTTTTCCACACGATTTG 57.360 33.333 0.00 0.00 0.00 2.32
71 72 5.290885 GCTTTGTTTCTTTTCCACACGATTT 59.709 36.000 0.00 0.00 0.00 2.17
72 73 4.803613 GCTTTGTTTCTTTTCCACACGATT 59.196 37.500 0.00 0.00 0.00 3.34
73 74 4.359706 GCTTTGTTTCTTTTCCACACGAT 58.640 39.130 0.00 0.00 0.00 3.73
74 75 3.428316 GGCTTTGTTTCTTTTCCACACGA 60.428 43.478 0.00 0.00 0.00 4.35
75 76 2.857748 GGCTTTGTTTCTTTTCCACACG 59.142 45.455 0.00 0.00 0.00 4.49
76 77 3.855858 TGGCTTTGTTTCTTTTCCACAC 58.144 40.909 0.00 0.00 0.00 3.82
77 78 4.543590 TTGGCTTTGTTTCTTTTCCACA 57.456 36.364 0.00 0.00 0.00 4.17
78 79 5.641636 TCTTTTGGCTTTGTTTCTTTTCCAC 59.358 36.000 0.00 0.00 0.00 4.02
79 80 5.799213 TCTTTTGGCTTTGTTTCTTTTCCA 58.201 33.333 0.00 0.00 0.00 3.53
80 81 6.735678 TTCTTTTGGCTTTGTTTCTTTTCC 57.264 33.333 0.00 0.00 0.00 3.13
81 82 7.904977 GTCATTCTTTTGGCTTTGTTTCTTTTC 59.095 33.333 0.00 0.00 0.00 2.29
82 83 7.412891 CGTCATTCTTTTGGCTTTGTTTCTTTT 60.413 33.333 0.00 0.00 0.00 2.27
83 84 6.035975 CGTCATTCTTTTGGCTTTGTTTCTTT 59.964 34.615 0.00 0.00 0.00 2.52
84 85 5.519927 CGTCATTCTTTTGGCTTTGTTTCTT 59.480 36.000 0.00 0.00 0.00 2.52
85 86 5.043248 CGTCATTCTTTTGGCTTTGTTTCT 58.957 37.500 0.00 0.00 0.00 2.52
86 87 5.040635 TCGTCATTCTTTTGGCTTTGTTTC 58.959 37.500 0.00 0.00 0.00 2.78
87 88 5.004922 TCGTCATTCTTTTGGCTTTGTTT 57.995 34.783 0.00 0.00 0.00 2.83
88 89 4.647424 TCGTCATTCTTTTGGCTTTGTT 57.353 36.364 0.00 0.00 0.00 2.83
89 90 4.647424 TTCGTCATTCTTTTGGCTTTGT 57.353 36.364 0.00 0.00 0.00 2.83
90 91 4.084900 GCTTTCGTCATTCTTTTGGCTTTG 60.085 41.667 0.00 0.00 0.00 2.77
91 92 4.051237 GCTTTCGTCATTCTTTTGGCTTT 58.949 39.130 0.00 0.00 0.00 3.51
92 93 3.319122 AGCTTTCGTCATTCTTTTGGCTT 59.681 39.130 0.00 0.00 0.00 4.35
93 94 2.887152 AGCTTTCGTCATTCTTTTGGCT 59.113 40.909 0.00 0.00 0.00 4.75
94 95 3.288809 AGCTTTCGTCATTCTTTTGGC 57.711 42.857 0.00 0.00 0.00 4.52
95 96 5.043248 ACAAAGCTTTCGTCATTCTTTTGG 58.957 37.500 9.23 0.00 0.00 3.28
96 97 6.405216 CAACAAAGCTTTCGTCATTCTTTTG 58.595 36.000 9.23 0.00 0.00 2.44
97 98 5.519927 CCAACAAAGCTTTCGTCATTCTTTT 59.480 36.000 9.23 0.00 0.00 2.27
98 99 5.043248 CCAACAAAGCTTTCGTCATTCTTT 58.957 37.500 9.23 0.00 0.00 2.52
99 100 4.499696 CCCAACAAAGCTTTCGTCATTCTT 60.500 41.667 9.23 0.00 0.00 2.52
100 101 3.004734 CCCAACAAAGCTTTCGTCATTCT 59.995 43.478 9.23 0.00 0.00 2.40
101 102 3.004315 TCCCAACAAAGCTTTCGTCATTC 59.996 43.478 9.23 0.00 0.00 2.67
102 103 2.955660 TCCCAACAAAGCTTTCGTCATT 59.044 40.909 9.23 0.00 0.00 2.57
103 104 2.293399 GTCCCAACAAAGCTTTCGTCAT 59.707 45.455 9.23 0.00 0.00 3.06
104 105 1.673920 GTCCCAACAAAGCTTTCGTCA 59.326 47.619 9.23 0.00 0.00 4.35
105 106 1.001706 GGTCCCAACAAAGCTTTCGTC 60.002 52.381 9.23 0.00 0.00 4.20
106 107 1.029681 GGTCCCAACAAAGCTTTCGT 58.970 50.000 9.23 8.49 0.00 3.85
107 108 0.313987 GGGTCCCAACAAAGCTTTCG 59.686 55.000 9.23 7.84 0.00 3.46
108 109 1.068588 GTGGGTCCCAACAAAGCTTTC 59.931 52.381 13.78 0.00 34.18 2.62
109 110 1.119684 GTGGGTCCCAACAAAGCTTT 58.880 50.000 13.78 5.69 34.18 3.51
110 111 0.759060 GGTGGGTCCCAACAAAGCTT 60.759 55.000 22.07 0.00 41.64 3.74
111 112 1.152546 GGTGGGTCCCAACAAAGCT 60.153 57.895 22.07 0.00 41.64 3.74
112 113 3.455152 GGTGGGTCCCAACAAAGC 58.545 61.111 22.07 3.00 41.64 3.51
117 118 2.275380 GCATGTGGTGGGTCCCAAC 61.275 63.158 20.19 20.19 42.51 3.77
118 119 2.117206 GCATGTGGTGGGTCCCAA 59.883 61.111 13.78 0.00 35.92 4.12
119 120 2.303914 TTTGCATGTGGTGGGTCCCA 62.304 55.000 6.47 6.47 34.77 4.37
120 121 1.532794 TTTGCATGTGGTGGGTCCC 60.533 57.895 0.00 0.00 34.77 4.46
121 122 0.539438 TCTTTGCATGTGGTGGGTCC 60.539 55.000 0.00 0.00 0.00 4.46
122 123 0.598065 GTCTTTGCATGTGGTGGGTC 59.402 55.000 0.00 0.00 0.00 4.46
123 124 1.172180 CGTCTTTGCATGTGGTGGGT 61.172 55.000 0.00 0.00 0.00 4.51
124 125 1.580942 CGTCTTTGCATGTGGTGGG 59.419 57.895 0.00 0.00 0.00 4.61
125 126 1.081242 GCGTCTTTGCATGTGGTGG 60.081 57.895 0.00 0.00 34.15 4.61
126 127 1.653667 TGCGTCTTTGCATGTGGTG 59.346 52.632 0.00 0.00 40.62 4.17
127 128 4.155950 TGCGTCTTTGCATGTGGT 57.844 50.000 0.00 0.00 40.62 4.16
151 152 1.975327 TGGTACAGAGTGCAGGAGC 59.025 57.895 0.00 0.00 42.57 4.70
152 153 4.311892 TGCATGGTACAGAGTGCAGGAG 62.312 54.545 8.88 0.00 45.32 3.69
153 154 2.446769 TGCATGGTACAGAGTGCAGGA 61.447 52.381 8.88 0.00 45.32 3.86
154 155 0.036105 TGCATGGTACAGAGTGCAGG 60.036 55.000 8.88 0.00 45.32 4.85
155 156 3.538379 TGCATGGTACAGAGTGCAG 57.462 52.632 8.88 0.00 45.32 4.41
164 165 1.475280 TCCTACAGTCGTGCATGGTAC 59.525 52.381 5.98 0.00 0.00 3.34
165 166 1.842052 TCCTACAGTCGTGCATGGTA 58.158 50.000 5.98 0.00 0.00 3.25
166 167 0.973632 TTCCTACAGTCGTGCATGGT 59.026 50.000 5.98 0.00 0.00 3.55
167 168 1.337728 TGTTCCTACAGTCGTGCATGG 60.338 52.381 5.98 0.00 0.00 3.66
168 169 2.078849 TGTTCCTACAGTCGTGCATG 57.921 50.000 0.00 0.00 0.00 4.06
169 170 2.037251 ACTTGTTCCTACAGTCGTGCAT 59.963 45.455 0.00 0.00 35.28 3.96
170 171 1.411246 ACTTGTTCCTACAGTCGTGCA 59.589 47.619 0.00 0.00 35.28 4.57
171 172 2.150397 ACTTGTTCCTACAGTCGTGC 57.850 50.000 0.00 0.00 35.28 5.34
172 173 3.713288 TCAACTTGTTCCTACAGTCGTG 58.287 45.455 0.00 0.00 35.28 4.35
173 174 4.281182 AGATCAACTTGTTCCTACAGTCGT 59.719 41.667 0.00 0.00 35.28 4.34
174 175 4.623167 CAGATCAACTTGTTCCTACAGTCG 59.377 45.833 0.00 0.00 35.28 4.18
175 176 4.390297 GCAGATCAACTTGTTCCTACAGTC 59.610 45.833 0.00 0.00 35.28 3.51
176 177 4.040952 AGCAGATCAACTTGTTCCTACAGT 59.959 41.667 0.00 0.00 35.28 3.55
177 178 4.573900 AGCAGATCAACTTGTTCCTACAG 58.426 43.478 0.00 0.00 35.28 2.74
178 179 4.623932 AGCAGATCAACTTGTTCCTACA 57.376 40.909 0.00 0.00 0.00 2.74
179 180 8.894768 ATTATAGCAGATCAACTTGTTCCTAC 57.105 34.615 0.00 0.00 0.00 3.18
180 181 7.867909 CGATTATAGCAGATCAACTTGTTCCTA 59.132 37.037 0.00 0.00 0.00 2.94
181 182 6.703607 CGATTATAGCAGATCAACTTGTTCCT 59.296 38.462 0.00 0.00 0.00 3.36
182 183 6.073548 CCGATTATAGCAGATCAACTTGTTCC 60.074 42.308 0.00 0.00 0.00 3.62
183 184 6.701841 TCCGATTATAGCAGATCAACTTGTTC 59.298 38.462 0.00 0.00 0.00 3.18
184 185 6.480320 GTCCGATTATAGCAGATCAACTTGTT 59.520 38.462 0.00 0.00 0.00 2.83
185 186 5.986135 GTCCGATTATAGCAGATCAACTTGT 59.014 40.000 0.00 0.00 0.00 3.16
186 187 5.117745 CGTCCGATTATAGCAGATCAACTTG 59.882 44.000 0.00 0.00 0.00 3.16
187 188 5.223382 CGTCCGATTATAGCAGATCAACTT 58.777 41.667 0.00 0.00 0.00 2.66
188 189 4.321304 CCGTCCGATTATAGCAGATCAACT 60.321 45.833 0.00 0.00 0.00 3.16
189 190 3.921021 CCGTCCGATTATAGCAGATCAAC 59.079 47.826 0.00 0.00 0.00 3.18
190 191 3.572682 ACCGTCCGATTATAGCAGATCAA 59.427 43.478 0.00 0.00 0.00 2.57
191 192 3.057526 CACCGTCCGATTATAGCAGATCA 60.058 47.826 0.00 0.00 0.00 2.92
192 193 3.502920 CACCGTCCGATTATAGCAGATC 58.497 50.000 0.00 0.00 0.00 2.75
193 194 2.352814 GCACCGTCCGATTATAGCAGAT 60.353 50.000 0.00 0.00 0.00 2.90
194 195 1.000607 GCACCGTCCGATTATAGCAGA 60.001 52.381 0.00 0.00 0.00 4.26
195 196 1.269569 TGCACCGTCCGATTATAGCAG 60.270 52.381 0.00 0.00 0.00 4.24
196 197 0.747852 TGCACCGTCCGATTATAGCA 59.252 50.000 0.00 0.00 0.00 3.49
197 198 1.419374 CTGCACCGTCCGATTATAGC 58.581 55.000 0.00 0.00 0.00 2.97
198 199 1.269569 TGCTGCACCGTCCGATTATAG 60.270 52.381 0.00 0.00 0.00 1.31
199 200 0.747852 TGCTGCACCGTCCGATTATA 59.252 50.000 0.00 0.00 0.00 0.98
200 201 0.810031 GTGCTGCACCGTCCGATTAT 60.810 55.000 21.78 0.00 0.00 1.28
201 202 1.447140 GTGCTGCACCGTCCGATTA 60.447 57.895 21.78 0.00 0.00 1.75
202 203 2.742372 GTGCTGCACCGTCCGATT 60.742 61.111 21.78 0.00 0.00 3.34
210 211 3.350612 TAAACCGCGTGCTGCACC 61.351 61.111 25.61 17.15 46.97 5.01
211 212 2.127383 GTAAACCGCGTGCTGCAC 60.127 61.111 22.38 22.38 46.97 4.57
212 213 3.707700 CGTAAACCGCGTGCTGCA 61.708 61.111 4.92 0.00 46.97 4.41
221 222 0.998226 TTCTCACGACGCGTAAACCG 60.998 55.000 13.97 14.84 38.32 4.44
222 223 1.130955 TTTCTCACGACGCGTAAACC 58.869 50.000 13.97 0.00 38.32 3.27
223 224 2.406024 TGATTTCTCACGACGCGTAAAC 59.594 45.455 13.97 0.00 38.32 2.01
224 225 2.659757 CTGATTTCTCACGACGCGTAAA 59.340 45.455 13.97 8.62 38.32 2.01
225 226 2.247637 CTGATTTCTCACGACGCGTAA 58.752 47.619 13.97 0.00 38.32 3.18
226 227 1.198408 ACTGATTTCTCACGACGCGTA 59.802 47.619 13.97 0.00 38.32 4.42
227 228 0.039437 ACTGATTTCTCACGACGCGT 60.039 50.000 13.85 13.85 42.36 6.01
228 229 0.635731 GACTGATTTCTCACGACGCG 59.364 55.000 3.53 3.53 0.00 6.01
229 230 0.635731 CGACTGATTTCTCACGACGC 59.364 55.000 0.00 0.00 0.00 5.19
230 231 1.260206 CCGACTGATTTCTCACGACG 58.740 55.000 0.00 0.00 0.00 5.12
231 232 1.630148 CCCGACTGATTTCTCACGAC 58.370 55.000 0.00 0.00 0.00 4.34
232 233 0.530744 CCCCGACTGATTTCTCACGA 59.469 55.000 0.00 0.00 0.00 4.35
233 234 0.460284 CCCCCGACTGATTTCTCACG 60.460 60.000 0.00 0.00 0.00 4.35
234 235 0.902531 TCCCCCGACTGATTTCTCAC 59.097 55.000 0.00 0.00 0.00 3.51
235 236 1.651737 TTCCCCCGACTGATTTCTCA 58.348 50.000 0.00 0.00 0.00 3.27
236 237 2.781681 TTTCCCCCGACTGATTTCTC 57.218 50.000 0.00 0.00 0.00 2.87
237 238 3.739401 ATTTTCCCCCGACTGATTTCT 57.261 42.857 0.00 0.00 0.00 2.52
238 239 5.647589 GTTTATTTTCCCCCGACTGATTTC 58.352 41.667 0.00 0.00 0.00 2.17
239 240 4.157105 CGTTTATTTTCCCCCGACTGATTT 59.843 41.667 0.00 0.00 0.00 2.17
240 241 3.692593 CGTTTATTTTCCCCCGACTGATT 59.307 43.478 0.00 0.00 0.00 2.57
241 242 3.275999 CGTTTATTTTCCCCCGACTGAT 58.724 45.455 0.00 0.00 0.00 2.90
242 243 2.038820 ACGTTTATTTTCCCCCGACTGA 59.961 45.455 0.00 0.00 0.00 3.41
243 244 2.429478 ACGTTTATTTTCCCCCGACTG 58.571 47.619 0.00 0.00 0.00 3.51
244 245 2.865119 ACGTTTATTTTCCCCCGACT 57.135 45.000 0.00 0.00 0.00 4.18
245 246 3.366273 GGAAACGTTTATTTTCCCCCGAC 60.366 47.826 14.65 0.00 44.37 4.79
246 247 2.819019 GGAAACGTTTATTTTCCCCCGA 59.181 45.455 14.65 0.00 44.37 5.14
247 248 3.220507 GGAAACGTTTATTTTCCCCCG 57.779 47.619 14.65 0.00 44.37 5.73
252 253 5.165676 GTGGATGGGGAAACGTTTATTTTC 58.834 41.667 14.65 7.59 33.00 2.29
253 254 4.589374 TGTGGATGGGGAAACGTTTATTTT 59.411 37.500 14.65 0.00 0.00 1.82
254 255 4.153411 TGTGGATGGGGAAACGTTTATTT 58.847 39.130 14.65 0.00 0.00 1.40
255 256 3.768878 TGTGGATGGGGAAACGTTTATT 58.231 40.909 14.65 0.00 0.00 1.40
256 257 3.443145 TGTGGATGGGGAAACGTTTAT 57.557 42.857 14.65 3.38 0.00 1.40
257 258 2.953284 TGTGGATGGGGAAACGTTTA 57.047 45.000 14.65 0.00 0.00 2.01
258 259 2.302587 ATGTGGATGGGGAAACGTTT 57.697 45.000 14.57 14.57 0.00 3.60
259 260 2.167662 GAATGTGGATGGGGAAACGTT 58.832 47.619 0.00 0.00 0.00 3.99
260 261 1.615919 GGAATGTGGATGGGGAAACGT 60.616 52.381 0.00 0.00 0.00 3.99
261 262 1.102978 GGAATGTGGATGGGGAAACG 58.897 55.000 0.00 0.00 0.00 3.60
262 263 1.824852 GTGGAATGTGGATGGGGAAAC 59.175 52.381 0.00 0.00 0.00 2.78
263 264 1.430853 TGTGGAATGTGGATGGGGAAA 59.569 47.619 0.00 0.00 0.00 3.13
264 265 1.079796 TGTGGAATGTGGATGGGGAA 58.920 50.000 0.00 0.00 0.00 3.97
265 266 1.215173 GATGTGGAATGTGGATGGGGA 59.785 52.381 0.00 0.00 0.00 4.81
268 269 2.579873 GGAGATGTGGAATGTGGATGG 58.420 52.381 0.00 0.00 0.00 3.51
987 1548 1.869767 GTCGCCATGGATCTGCTTAAG 59.130 52.381 18.40 0.00 0.00 1.85
988 1549 1.475034 GGTCGCCATGGATCTGCTTAA 60.475 52.381 18.40 0.00 0.00 1.85
989 1550 0.106708 GGTCGCCATGGATCTGCTTA 59.893 55.000 18.40 0.00 0.00 3.09
990 1551 1.153086 GGTCGCCATGGATCTGCTT 60.153 57.895 18.40 0.00 0.00 3.91
991 1552 2.507944 GGTCGCCATGGATCTGCT 59.492 61.111 18.40 0.00 0.00 4.24
1015 1653 2.124983 CCACATGCTGACTCGGGG 60.125 66.667 0.00 0.00 0.00 5.73
1016 1654 0.742281 CTTCCACATGCTGACTCGGG 60.742 60.000 0.00 0.00 0.00 5.14
1017 1655 1.364626 GCTTCCACATGCTGACTCGG 61.365 60.000 0.00 0.00 0.00 4.63
1018 1656 0.390866 AGCTTCCACATGCTGACTCG 60.391 55.000 0.00 0.00 38.21 4.18
1019 1657 3.547567 AGCTTCCACATGCTGACTC 57.452 52.632 0.00 0.00 38.21 3.36
1034 1672 0.036010 CGGATTGTTGGAGGACAGCT 60.036 55.000 0.00 0.00 0.00 4.24
1058 2119 1.403249 GCTTAAACTCCCAGTACGCGA 60.403 52.381 15.93 0.00 0.00 5.87
1712 2777 3.402110 TCCGCCAAGTATGATGCATTAG 58.598 45.455 0.00 0.00 0.00 1.73
1793 2858 9.715121 AAATTTCAAGCAAATAGACACATGAAT 57.285 25.926 0.00 0.00 33.16 2.57
1795 2860 9.624697 GTAAATTTCAAGCAAATAGACACATGA 57.375 29.630 0.00 0.00 33.16 3.07
1796 2861 9.630098 AGTAAATTTCAAGCAAATAGACACATG 57.370 29.630 0.00 0.00 33.16 3.21
1797 2862 9.846248 GAGTAAATTTCAAGCAAATAGACACAT 57.154 29.630 0.00 0.00 33.16 3.21
1798 2863 9.066892 AGAGTAAATTTCAAGCAAATAGACACA 57.933 29.630 0.00 0.00 33.16 3.72
1923 2988 1.536766 TGAAGAACAATGGCTGCTTCG 59.463 47.619 0.00 0.00 38.17 3.79
2079 3144 3.333680 ACCCATGAAACATGTTCCTAGGT 59.666 43.478 12.39 12.22 0.00 3.08
2080 3145 3.968265 ACCCATGAAACATGTTCCTAGG 58.032 45.455 12.39 11.64 0.00 3.02
2081 3146 4.380867 GCAACCCATGAAACATGTTCCTAG 60.381 45.833 12.39 3.00 0.00 3.02
2082 3147 3.509575 GCAACCCATGAAACATGTTCCTA 59.490 43.478 12.39 1.66 0.00 2.94
2083 3148 2.299867 GCAACCCATGAAACATGTTCCT 59.700 45.455 12.39 0.00 0.00 3.36
2084 3149 2.612721 GGCAACCCATGAAACATGTTCC 60.613 50.000 12.39 0.00 0.00 3.62
2086 3151 1.000731 CGGCAACCCATGAAACATGTT 59.999 47.619 4.92 4.92 0.00 2.71
2087 3152 0.602562 CGGCAACCCATGAAACATGT 59.397 50.000 10.19 0.00 0.00 3.21
2088 3153 0.108709 CCGGCAACCCATGAAACATG 60.109 55.000 0.00 4.94 0.00 3.21
2210 5436 6.809976 ACTCTCTTTCCGGATAATTAAGGT 57.190 37.500 4.15 0.00 0.00 3.50
2211 5437 6.483640 CCAACTCTCTTTCCGGATAATTAAGG 59.516 42.308 4.15 0.16 0.00 2.69
2212 5438 7.272978 TCCAACTCTCTTTCCGGATAATTAAG 58.727 38.462 4.15 5.63 0.00 1.85
2213 5439 7.125204 TCTCCAACTCTCTTTCCGGATAATTAA 59.875 37.037 4.15 0.00 0.00 1.40
2214 5440 6.610020 TCTCCAACTCTCTTTCCGGATAATTA 59.390 38.462 4.15 0.00 0.00 1.40
2215 5441 5.425539 TCTCCAACTCTCTTTCCGGATAATT 59.574 40.000 4.15 0.00 0.00 1.40
2216 5442 4.962995 TCTCCAACTCTCTTTCCGGATAAT 59.037 41.667 4.15 0.00 0.00 1.28
2217 5443 4.159879 GTCTCCAACTCTCTTTCCGGATAA 59.840 45.833 4.15 1.62 0.00 1.75
2218 5444 3.700038 GTCTCCAACTCTCTTTCCGGATA 59.300 47.826 4.15 0.00 0.00 2.59
2219 5445 2.498078 GTCTCCAACTCTCTTTCCGGAT 59.502 50.000 4.15 0.00 0.00 4.18
2220 5446 1.893801 GTCTCCAACTCTCTTTCCGGA 59.106 52.381 0.00 0.00 0.00 5.14
2221 5447 1.618837 TGTCTCCAACTCTCTTTCCGG 59.381 52.381 0.00 0.00 0.00 5.14
2222 5448 3.060602 GTTGTCTCCAACTCTCTTTCCG 58.939 50.000 0.00 0.00 46.07 4.30
2233 5459 3.374042 TCCAAGGTTTGTTGTCTCCAA 57.626 42.857 0.00 0.00 0.00 3.53
2234 5460 3.374042 TTCCAAGGTTTGTTGTCTCCA 57.626 42.857 0.00 0.00 0.00 3.86
2235 5461 4.937201 AATTCCAAGGTTTGTTGTCTCC 57.063 40.909 0.00 0.00 0.00 3.71
2236 5462 8.887036 ATAAAAATTCCAAGGTTTGTTGTCTC 57.113 30.769 0.00 0.00 0.00 3.36
2237 5463 9.981114 CTATAAAAATTCCAAGGTTTGTTGTCT 57.019 29.630 0.00 0.00 0.00 3.41
2238 5464 8.708742 GCTATAAAAATTCCAAGGTTTGTTGTC 58.291 33.333 0.00 0.00 0.00 3.18
2260 5486 5.377478 AGCTAGGCCTTTAAATTTCGCTAT 58.623 37.500 12.58 0.00 0.00 2.97
2295 5521 7.068593 ACCAGCATATTAGTAATGTTTGCATGT 59.931 33.333 20.25 15.67 35.15 3.21
2521 5752 7.272731 CACATTGTGATGTCTTTATTGCTTCAG 59.727 37.037 11.45 0.00 44.55 3.02
3253 6493 3.321968 CGTCATCAGATTCCTCCATGGTA 59.678 47.826 12.58 0.00 37.07 3.25
3443 6683 2.693591 AGAAGTGGAAGTGACAAGTCGA 59.306 45.455 0.00 0.00 0.00 4.20
3707 6947 1.189446 GCGTCACTTTCACTGTGTACG 59.811 52.381 7.79 9.97 39.47 3.67
3857 7097 1.442526 GCGCAAGGAGCTACATGCAT 61.443 55.000 24.82 0.00 42.61 3.96
3887 7127 0.841289 TCAAAGTGGTCGGACCCTTT 59.159 50.000 25.31 25.31 38.45 3.11
3895 7135 5.004156 GCGTACTATAAACTCAAAGTGGTCG 59.996 44.000 0.00 0.00 0.00 4.79
3906 7146 5.125739 AGAGAACAGCTGCGTACTATAAACT 59.874 40.000 15.27 0.00 0.00 2.66
3914 7154 4.555348 AGTATAGAGAACAGCTGCGTAC 57.445 45.455 15.27 6.61 0.00 3.67
3929 7169 4.737279 CGCGCCATCAATGATCTAGTATAG 59.263 45.833 0.00 0.00 41.04 1.31
3962 7202 8.398878 TCGTTTTCATTGTAAAATAGAAGGGT 57.601 30.769 0.00 0.00 31.43 4.34
4435 7675 8.237811 ACATCAATTTCCTCTACACTTTGTTT 57.762 30.769 0.00 0.00 0.00 2.83
4517 7757 6.073385 AGCTAATTATCTTGTCATGTGATGCG 60.073 38.462 0.00 0.00 0.00 4.73
4572 7812 9.226606 TGATTTCATTTTACCAGATAAACTCGT 57.773 29.630 0.00 0.00 32.29 4.18
4623 7864 7.321717 TCCCTGAGCTTATATAGAGCAAAAT 57.678 36.000 15.00 0.56 42.56 1.82
4627 7868 5.583932 TCATCCCTGAGCTTATATAGAGCA 58.416 41.667 15.00 0.41 42.56 4.26
4628 7869 6.154363 AGTTCATCCCTGAGCTTATATAGAGC 59.846 42.308 0.00 8.16 39.65 4.09
4629 7870 7.716799 AGTTCATCCCTGAGCTTATATAGAG 57.283 40.000 0.00 0.00 39.65 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.