Multiple sequence alignment - TraesCS1D01G190700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G190700 chr1D 100.000 2798 0 0 1 2798 262473917 262476714 0.000000e+00 5168
1 TraesCS1D01G190700 chr1A 91.473 1337 52 14 670 1998 336475756 336477038 0.000000e+00 1781
2 TraesCS1D01G190700 chr1A 90.282 710 31 15 2121 2798 336477096 336477799 0.000000e+00 894
3 TraesCS1D01G190700 chr1B 94.959 1111 35 9 896 1995 348478632 348479732 0.000000e+00 1722
4 TraesCS1D01G190700 chr1B 96.660 539 17 1 57 595 671482460 671482997 0.000000e+00 894
5 TraesCS1D01G190700 chr1B 93.226 310 10 6 591 899 348474777 348475076 1.980000e-121 446
6 TraesCS1D01G190700 chr1B 93.506 77 5 0 2722 2798 348480773 348480849 6.330000e-22 115
7 TraesCS1D01G190700 chr1B 96.825 63 1 1 2 64 348474708 348474769 1.370000e-18 104
8 TraesCS1D01G190700 chr7B 96.089 537 20 1 57 593 119235598 119235063 0.000000e+00 874
9 TraesCS1D01G190700 chr7B 79.828 233 42 5 366 595 71283000 71283230 6.200000e-37 165
10 TraesCS1D01G190700 chr7B 86.486 148 19 1 1977 2124 32103199 32103053 8.020000e-36 161
11 TraesCS1D01G190700 chr7B 87.879 132 16 0 1993 2124 715262733 715262864 3.730000e-34 156
12 TraesCS1D01G190700 chr3D 95.575 452 18 2 153 603 511456012 511455562 0.000000e+00 723
13 TraesCS1D01G190700 chr3D 96.000 100 3 1 57 156 511457151 511457053 8.020000e-36 161
14 TraesCS1D01G190700 chr5B 94.737 304 14 2 291 593 377188748 377189050 3.260000e-129 472
15 TraesCS1D01G190700 chr5B 87.786 131 16 0 1994 2124 578388647 578388777 1.340000e-33 154
16 TraesCS1D01G190700 chr3B 92.547 161 11 1 423 582 18567185 18567345 2.170000e-56 230
17 TraesCS1D01G190700 chr4D 82.482 274 33 9 1384 1645 481548011 481548281 2.800000e-55 226
18 TraesCS1D01G190700 chr5A 81.404 285 33 12 1383 1651 661149077 661148797 6.070000e-52 215
19 TraesCS1D01G190700 chr4A 73.190 511 117 17 94 592 577506908 577507410 1.720000e-37 167
20 TraesCS1D01G190700 chr6D 89.313 131 14 0 1994 2124 31788229 31788359 6.200000e-37 165
21 TraesCS1D01G190700 chr6D 89.313 131 14 0 1994 2124 32689059 32688929 6.200000e-37 165
22 TraesCS1D01G190700 chr2B 87.591 137 16 1 1987 2123 437240078 437239943 1.040000e-34 158
23 TraesCS1D01G190700 chr2B 87.879 132 16 0 1993 2124 460549089 460548958 3.730000e-34 156
24 TraesCS1D01G190700 chr3A 87.786 131 16 0 1994 2124 705232085 705232215 1.340000e-33 154
25 TraesCS1D01G190700 chr3A 86.331 139 17 2 1987 2124 387774254 387774391 1.740000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G190700 chr1D 262473917 262476714 2797 False 5168.00 5168 100.0000 1 2798 1 chr1D.!!$F1 2797
1 TraesCS1D01G190700 chr1A 336475756 336477799 2043 False 1337.50 1781 90.8775 670 2798 2 chr1A.!!$F1 2128
2 TraesCS1D01G190700 chr1B 671482460 671482997 537 False 894.00 894 96.6600 57 595 1 chr1B.!!$F1 538
3 TraesCS1D01G190700 chr1B 348474708 348480849 6141 False 596.75 1722 94.6290 2 2798 4 chr1B.!!$F2 2796
4 TraesCS1D01G190700 chr7B 119235063 119235598 535 True 874.00 874 96.0890 57 593 1 chr7B.!!$R2 536
5 TraesCS1D01G190700 chr3D 511455562 511457151 1589 True 442.00 723 95.7875 57 603 2 chr3D.!!$R1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
515 1560 0.107017 CAGTATGGTTGGGCTCAGGG 60.107 60.0 0.0 0.0 0.00 4.45 F
1170 5789 0.239347 GCAGAACGCCATCCATATGC 59.761 55.0 0.0 0.0 32.94 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1348 5968 0.107066 AACCCAACGTCGGTTCCTTT 60.107 50.0 12.93 0.0 39.46 3.11 R
2505 7131 0.774908 TTGTTTTGGGACGGAGGGAT 59.225 50.0 0.00 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 2.359848 GCCGGTTGGACAAAACTAAACT 59.640 45.455 1.90 0.00 37.49 2.66
136 137 2.889617 CGATGTACCCGCCACTGA 59.110 61.111 0.00 0.00 0.00 3.41
292 1337 2.433664 CCGTACCGAGTTGCCCAC 60.434 66.667 0.00 0.00 0.00 4.61
294 1339 1.597797 CCGTACCGAGTTGCCCACTA 61.598 60.000 0.00 0.00 35.01 2.74
313 1358 1.035923 ATGATCGAGATGGACTGCGT 58.964 50.000 0.00 0.00 0.00 5.24
459 1504 4.355543 TCGCAAAATAAAGTCAGCCATC 57.644 40.909 0.00 0.00 0.00 3.51
515 1560 0.107017 CAGTATGGTTGGGCTCAGGG 60.107 60.000 0.00 0.00 0.00 4.45
543 1588 7.062839 TGAGTGACATTGTAAAACTTGTTTTGC 59.937 33.333 18.33 17.29 0.00 3.68
731 1776 4.385754 GGAGGAGAACTATTTGGCCTTCAT 60.386 45.833 3.32 0.00 0.00 2.57
794 1847 4.200283 GACGCTCGCTCTCCCCAG 62.200 72.222 0.00 0.00 0.00 4.45
870 1923 3.431912 GCTTTTTCTGCCATTTTAACCCG 59.568 43.478 0.00 0.00 0.00 5.28
874 1927 2.578445 GCCATTTTAACCCGCGCG 60.578 61.111 25.67 25.67 0.00 6.86
893 1946 1.137825 CGCCTCCTCTTCACTCGTC 59.862 63.158 0.00 0.00 0.00 4.20
927 5539 2.036098 TCCGTCCCGTTCCAGCTA 59.964 61.111 0.00 0.00 0.00 3.32
934 5546 0.874607 CCCGTTCCAGCTATACGCAC 60.875 60.000 8.45 0.00 42.61 5.34
1078 5697 7.497595 AGAATCCAACACGTATTGCTCTTATA 58.502 34.615 0.00 0.00 0.00 0.98
1079 5698 8.150945 AGAATCCAACACGTATTGCTCTTATAT 58.849 33.333 0.00 0.00 0.00 0.86
1080 5699 9.419297 GAATCCAACACGTATTGCTCTTATATA 57.581 33.333 0.00 0.00 0.00 0.86
1081 5700 9.944376 AATCCAACACGTATTGCTCTTATATAT 57.056 29.630 0.00 0.00 0.00 0.86
1118 5737 2.015587 CTGCCTTCTGATCTTTGCTCC 58.984 52.381 0.00 0.00 0.00 4.70
1120 5739 2.040813 TGCCTTCTGATCTTTGCTCCTT 59.959 45.455 0.00 0.00 0.00 3.36
1121 5740 2.422832 GCCTTCTGATCTTTGCTCCTTG 59.577 50.000 0.00 0.00 0.00 3.61
1150 5769 2.051518 CCTGCTCGAGCTCTGGTCT 61.052 63.158 35.27 0.00 42.66 3.85
1164 5783 2.109126 GGTCTGCAGAACGCCATCC 61.109 63.158 20.19 9.89 41.33 3.51
1170 5789 0.239347 GCAGAACGCCATCCATATGC 59.761 55.000 0.00 0.00 32.94 3.14
1331 5951 2.605366 GCTCGTGAGGAACAATAAGAGC 59.395 50.000 0.00 0.00 42.10 4.09
1332 5952 3.677424 GCTCGTGAGGAACAATAAGAGCT 60.677 47.826 6.84 0.00 44.35 4.09
1333 5953 4.440250 GCTCGTGAGGAACAATAAGAGCTA 60.440 45.833 6.84 0.00 44.35 3.32
1587 6207 2.391389 CGACGCCAAGAAGGAAGGC 61.391 63.158 0.00 0.00 44.89 4.35
1854 6474 1.337703 ACGTGTGGTACAAAGACGCTA 59.662 47.619 14.71 0.00 44.16 4.26
1856 6476 2.064014 GTGTGGTACAAAGACGCTACC 58.936 52.381 0.00 0.00 44.16 3.18
1914 6534 1.533711 CAGTTATGGGCAGGGAGGG 59.466 63.158 0.00 0.00 0.00 4.30
1964 6584 7.446106 TGGGACAATTATACCTGTAATGACT 57.554 36.000 0.00 0.00 31.92 3.41
2021 6641 8.603898 TCTCTCCATTTACTTATACAAGACCA 57.396 34.615 0.00 0.00 35.60 4.02
2022 6642 8.475639 TCTCTCCATTTACTTATACAAGACCAC 58.524 37.037 0.00 0.00 35.60 4.16
2024 6644 8.258007 TCTCCATTTACTTATACAAGACCACTG 58.742 37.037 0.00 0.00 35.60 3.66
2025 6645 7.913789 TCCATTTACTTATACAAGACCACTGT 58.086 34.615 0.00 0.00 35.60 3.55
2026 6646 9.038072 TCCATTTACTTATACAAGACCACTGTA 57.962 33.333 0.00 0.00 35.60 2.74
2039 6659 9.880157 ACAAGACCACTGTAAAATATACGTATT 57.120 29.630 14.33 0.00 31.89 1.89
2041 6661 8.361592 AGACCACTGTAAAATATACGTATTGC 57.638 34.615 14.33 0.48 31.03 3.56
2043 6663 8.671384 ACCACTGTAAAATATACGTATTGCAT 57.329 30.769 14.33 0.00 31.03 3.96
2044 6664 8.770828 ACCACTGTAAAATATACGTATTGCATC 58.229 33.333 14.33 1.98 31.03 3.91
2045 6665 8.988934 CCACTGTAAAATATACGTATTGCATCT 58.011 33.333 14.33 0.00 31.03 2.90
2056 6676 6.294361 ACGTATTGCATCTATATAAGGCCA 57.706 37.500 5.01 0.00 0.00 5.36
2057 6677 6.106673 ACGTATTGCATCTATATAAGGCCAC 58.893 40.000 5.01 0.00 0.00 5.01
2058 6678 5.523916 CGTATTGCATCTATATAAGGCCACC 59.476 44.000 5.01 0.00 0.00 4.61
2059 6679 4.991789 TTGCATCTATATAAGGCCACCA 57.008 40.909 5.01 0.00 0.00 4.17
2060 6680 4.991789 TGCATCTATATAAGGCCACCAA 57.008 40.909 5.01 0.00 0.00 3.67
2061 6681 4.651778 TGCATCTATATAAGGCCACCAAC 58.348 43.478 5.01 0.00 0.00 3.77
2062 6682 4.103943 TGCATCTATATAAGGCCACCAACA 59.896 41.667 5.01 0.00 0.00 3.33
2063 6683 4.697352 GCATCTATATAAGGCCACCAACAG 59.303 45.833 5.01 0.00 0.00 3.16
2064 6684 5.746065 GCATCTATATAAGGCCACCAACAGT 60.746 44.000 5.01 0.00 0.00 3.55
2065 6685 6.520061 GCATCTATATAAGGCCACCAACAGTA 60.520 42.308 5.01 0.00 0.00 2.74
2066 6686 7.450074 CATCTATATAAGGCCACCAACAGTAA 58.550 38.462 5.01 0.00 0.00 2.24
2067 6687 7.626999 TCTATATAAGGCCACCAACAGTAAT 57.373 36.000 5.01 0.00 0.00 1.89
2068 6688 7.676947 TCTATATAAGGCCACCAACAGTAATC 58.323 38.462 5.01 0.00 0.00 1.75
2069 6689 1.821216 AAGGCCACCAACAGTAATCG 58.179 50.000 5.01 0.00 0.00 3.34
2070 6690 0.981183 AGGCCACCAACAGTAATCGA 59.019 50.000 5.01 0.00 0.00 3.59
2071 6691 1.066143 AGGCCACCAACAGTAATCGAG 60.066 52.381 5.01 0.00 0.00 4.04
2072 6692 1.066430 GGCCACCAACAGTAATCGAGA 60.066 52.381 0.00 0.00 0.00 4.04
2073 6693 2.000447 GCCACCAACAGTAATCGAGAC 59.000 52.381 0.00 0.00 0.00 3.36
2074 6694 2.611971 GCCACCAACAGTAATCGAGACA 60.612 50.000 3.35 0.00 0.00 3.41
2075 6695 3.659786 CCACCAACAGTAATCGAGACAA 58.340 45.455 3.35 0.00 0.00 3.18
2076 6696 4.062293 CCACCAACAGTAATCGAGACAAA 58.938 43.478 3.35 0.00 0.00 2.83
2077 6697 4.513692 CCACCAACAGTAATCGAGACAAAA 59.486 41.667 3.35 0.00 0.00 2.44
2078 6698 5.008217 CCACCAACAGTAATCGAGACAAAAA 59.992 40.000 3.35 0.00 0.00 1.94
2079 6699 6.293955 CCACCAACAGTAATCGAGACAAAAAT 60.294 38.462 3.35 0.00 0.00 1.82
2080 6700 7.138736 CACCAACAGTAATCGAGACAAAAATT 58.861 34.615 3.35 0.00 0.00 1.82
2081 6701 8.286800 CACCAACAGTAATCGAGACAAAAATTA 58.713 33.333 3.35 0.00 0.00 1.40
2082 6702 8.842280 ACCAACAGTAATCGAGACAAAAATTAA 58.158 29.630 3.35 0.00 0.00 1.40
2083 6703 9.840427 CCAACAGTAATCGAGACAAAAATTAAT 57.160 29.630 3.35 0.00 0.00 1.40
2096 6716 9.965824 AGACAAAAATTAATGATGTTTTCTCGT 57.034 25.926 0.00 0.00 0.00 4.18
2105 6725 6.604735 ATGATGTTTTCTCGTATTAGCACC 57.395 37.500 0.00 0.00 0.00 5.01
2106 6726 5.730550 TGATGTTTTCTCGTATTAGCACCT 58.269 37.500 0.00 0.00 0.00 4.00
2107 6727 6.170506 TGATGTTTTCTCGTATTAGCACCTT 58.829 36.000 0.00 0.00 0.00 3.50
2108 6728 5.856126 TGTTTTCTCGTATTAGCACCTTG 57.144 39.130 0.00 0.00 0.00 3.61
2109 6729 5.302360 TGTTTTCTCGTATTAGCACCTTGT 58.698 37.500 0.00 0.00 0.00 3.16
2110 6730 5.761234 TGTTTTCTCGTATTAGCACCTTGTT 59.239 36.000 0.00 0.00 0.00 2.83
2111 6731 6.261381 TGTTTTCTCGTATTAGCACCTTGTTT 59.739 34.615 0.00 0.00 0.00 2.83
2112 6732 7.441760 TGTTTTCTCGTATTAGCACCTTGTTTA 59.558 33.333 0.00 0.00 0.00 2.01
2113 6733 7.966246 TTTCTCGTATTAGCACCTTGTTTAA 57.034 32.000 0.00 0.00 0.00 1.52
2114 6734 8.556213 TTTCTCGTATTAGCACCTTGTTTAAT 57.444 30.769 0.00 0.00 0.00 1.40
2115 6735 9.656040 TTTCTCGTATTAGCACCTTGTTTAATA 57.344 29.630 0.00 0.00 0.00 0.98
2116 6736 8.638685 TCTCGTATTAGCACCTTGTTTAATAC 57.361 34.615 0.00 0.00 0.00 1.89
2117 6737 8.472413 TCTCGTATTAGCACCTTGTTTAATACT 58.528 33.333 9.98 0.00 31.74 2.12
2118 6738 9.095065 CTCGTATTAGCACCTTGTTTAATACTT 57.905 33.333 9.98 0.00 31.74 2.24
2193 6814 6.466812 TGATTAGTCTCATGTTCTCTTTGCA 58.533 36.000 0.00 0.00 0.00 4.08
2254 6875 3.735514 GCATAAGTTGGACTCTCTCCGTC 60.736 52.174 0.00 0.00 43.03 4.79
2273 6894 7.935210 TCTCCGTCCTAAACTATTTGAAGTTTT 59.065 33.333 7.24 0.00 45.20 2.43
2274 6895 9.211485 CTCCGTCCTAAACTATTTGAAGTTTTA 57.789 33.333 7.24 0.00 45.20 1.52
2375 6996 5.699097 TTTCAAAAAGGAGGAATACCACG 57.301 39.130 0.00 0.00 38.94 4.94
2382 7003 0.105039 GAGGAATACCACGGCCTCTG 59.895 60.000 0.00 0.00 42.81 3.35
2430 7055 5.746307 AGTTCGTTCAAGTTAAAGGGAAC 57.254 39.130 0.00 0.00 37.01 3.62
2448 7073 6.618811 AGGGAACTATATTAACATCTACGCG 58.381 40.000 3.53 3.53 40.61 6.01
2450 7075 5.003214 GGAACTATATTAACATCTACGCGCG 59.997 44.000 30.96 30.96 0.00 6.86
2529 7155 1.873591 CTCCGTCCCAAAACAAGTCAG 59.126 52.381 0.00 0.00 0.00 3.51
2530 7156 0.310854 CCGTCCCAAAACAAGTCAGC 59.689 55.000 0.00 0.00 0.00 4.26
2544 7189 4.814234 ACAAGTCAGCGACACTTATTTTGA 59.186 37.500 10.52 0.00 34.60 2.69
2552 7197 4.138817 CGACACTTATTTTGAAACGGACG 58.861 43.478 0.00 0.00 0.00 4.79
2556 7201 3.187842 ACTTATTTTGAAACGGACGGAGC 59.812 43.478 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 1.202486 GGGTACATCGCTTCCATCGAA 60.202 52.381 0.00 0.00 39.54 3.71
120 121 1.090052 GCTTCAGTGGCGGGTACATC 61.090 60.000 0.00 0.00 0.00 3.06
292 1337 2.227626 ACGCAGTCCATCTCGATCATAG 59.772 50.000 0.00 0.00 29.74 2.23
294 1339 1.035923 ACGCAGTCCATCTCGATCAT 58.964 50.000 0.00 0.00 29.74 2.45
313 1358 4.319694 CGTTCAACATCATGACAGCTTCAA 60.320 41.667 0.00 0.00 37.92 2.69
459 1504 1.002888 CCTCCCATATGCAGCTAGTGG 59.997 57.143 0.00 0.00 0.00 4.00
515 1560 8.460831 AAACAAGTTTTACAATGTCACTCAAC 57.539 30.769 0.00 0.00 0.00 3.18
543 1588 7.509546 TCTATTACTTAAGGAGGCAAATCAGG 58.490 38.462 7.53 0.00 0.00 3.86
595 1640 2.297880 TCTTTGCGGTGAGTGCTAACTA 59.702 45.455 0.00 0.00 36.52 2.24
596 1641 1.070134 TCTTTGCGGTGAGTGCTAACT 59.930 47.619 0.00 0.00 40.21 2.24
631 1676 0.734253 CGTCTCTAGTGTGCAGTGCC 60.734 60.000 13.72 4.57 0.00 5.01
679 1724 2.124695 GGGTGACGATTCTGGCCC 60.125 66.667 0.00 0.00 0.00 5.80
711 1756 4.526970 TGATGAAGGCCAAATAGTTCTCC 58.473 43.478 5.01 0.00 0.00 3.71
731 1776 0.536460 GCGGGGGAAAGTGAAGTTGA 60.536 55.000 0.00 0.00 0.00 3.18
794 1847 1.648504 ATAAAGGTTGTAGCGACGGC 58.351 50.000 0.00 0.00 40.37 5.68
874 1927 2.202676 CGAGTGAAGAGGAGGCGC 60.203 66.667 0.00 0.00 0.00 6.53
893 1946 1.067212 CGGACAGGAGGGAATAACGAG 59.933 57.143 0.00 0.00 0.00 4.18
927 5539 3.480133 GGCAGGGAGGGTGCGTAT 61.480 66.667 0.00 0.00 42.19 3.06
934 5546 1.306141 TACAGACAGGCAGGGAGGG 60.306 63.158 0.00 0.00 0.00 4.30
1078 5697 2.102578 GTGCACAAAAGGGGCAGATAT 58.897 47.619 13.17 0.00 38.38 1.63
1079 5698 1.075374 AGTGCACAAAAGGGGCAGATA 59.925 47.619 21.04 0.00 38.38 1.98
1080 5699 0.178953 AGTGCACAAAAGGGGCAGAT 60.179 50.000 21.04 0.00 38.38 2.90
1081 5700 1.108727 CAGTGCACAAAAGGGGCAGA 61.109 55.000 21.04 0.00 38.38 4.26
1118 5737 1.205893 GAGCAGGGGAGTACAGACAAG 59.794 57.143 0.00 0.00 0.00 3.16
1120 5739 0.965866 CGAGCAGGGGAGTACAGACA 60.966 60.000 0.00 0.00 0.00 3.41
1121 5740 0.680280 TCGAGCAGGGGAGTACAGAC 60.680 60.000 0.00 0.00 0.00 3.51
1164 5783 2.666994 CAGCTAGCGTGATCAGCATATG 59.333 50.000 9.55 0.00 37.78 1.78
1170 5789 1.662629 CCAAACAGCTAGCGTGATCAG 59.337 52.381 17.52 4.05 0.00 2.90
1331 5951 5.078411 TCCTTTCTTGCTTCAGCTAGTAG 57.922 43.478 9.62 8.44 42.89 2.57
1332 5952 5.238583 GTTCCTTTCTTGCTTCAGCTAGTA 58.761 41.667 9.62 0.00 42.89 1.82
1333 5953 4.068599 GTTCCTTTCTTGCTTCAGCTAGT 58.931 43.478 9.62 0.00 42.89 2.57
1348 5968 0.107066 AACCCAACGTCGGTTCCTTT 60.107 50.000 12.93 0.00 39.46 3.11
1587 6207 1.668101 CGTCCTTCTTCTCCCCCTCG 61.668 65.000 0.00 0.00 0.00 4.63
1687 6307 3.711086 CCGATCTGTACTGGTTCATGAG 58.289 50.000 0.00 0.00 0.00 2.90
1854 6474 1.910772 ACGCCAGAAGAGAGCAGGT 60.911 57.895 0.00 0.00 0.00 4.00
1856 6476 0.528017 TACACGCCAGAAGAGAGCAG 59.472 55.000 0.00 0.00 0.00 4.24
1914 6534 2.218530 GCAAAGTTTTCCACGTGAATGC 59.781 45.455 19.30 11.36 31.67 3.56
1953 6573 1.732259 GCCGTCACAAGTCATTACAGG 59.268 52.381 0.00 0.00 0.00 4.00
1998 6618 8.258007 CAGTGGTCTTGTATAAGTAAATGGAGA 58.742 37.037 0.00 0.00 35.38 3.71
2000 6620 7.913789 ACAGTGGTCTTGTATAAGTAAATGGA 58.086 34.615 0.00 0.00 35.38 3.41
2019 6639 8.988934 AGATGCAATACGTATATTTTACAGTGG 58.011 33.333 8.83 0.00 0.00 4.00
2030 6650 9.138596 TGGCCTTATATAGATGCAATACGTATA 57.861 33.333 8.83 0.00 0.00 1.47
2031 6651 7.926555 GTGGCCTTATATAGATGCAATACGTAT 59.073 37.037 3.32 1.14 0.00 3.06
2032 6652 7.262772 GTGGCCTTATATAGATGCAATACGTA 58.737 38.462 3.32 0.00 0.00 3.57
2033 6653 6.106673 GTGGCCTTATATAGATGCAATACGT 58.893 40.000 3.32 0.00 0.00 3.57
2034 6654 5.523916 GGTGGCCTTATATAGATGCAATACG 59.476 44.000 3.32 0.00 0.00 3.06
2035 6655 6.414732 TGGTGGCCTTATATAGATGCAATAC 58.585 40.000 3.32 0.00 0.00 1.89
2039 6659 4.103943 TGTTGGTGGCCTTATATAGATGCA 59.896 41.667 3.32 0.00 0.00 3.96
2040 6660 4.651778 TGTTGGTGGCCTTATATAGATGC 58.348 43.478 3.32 0.00 0.00 3.91
2041 6661 5.869579 ACTGTTGGTGGCCTTATATAGATG 58.130 41.667 3.32 0.00 0.00 2.90
2043 6663 7.524863 CGATTACTGTTGGTGGCCTTATATAGA 60.525 40.741 3.32 0.00 0.00 1.98
2044 6664 6.590292 CGATTACTGTTGGTGGCCTTATATAG 59.410 42.308 3.32 0.00 0.00 1.31
2045 6665 6.268158 TCGATTACTGTTGGTGGCCTTATATA 59.732 38.462 3.32 0.00 0.00 0.86
2046 6666 5.071250 TCGATTACTGTTGGTGGCCTTATAT 59.929 40.000 3.32 0.00 0.00 0.86
2047 6667 4.406326 TCGATTACTGTTGGTGGCCTTATA 59.594 41.667 3.32 0.00 0.00 0.98
2048 6668 3.199071 TCGATTACTGTTGGTGGCCTTAT 59.801 43.478 3.32 0.00 0.00 1.73
2049 6669 2.568062 TCGATTACTGTTGGTGGCCTTA 59.432 45.455 3.32 0.00 0.00 2.69
2050 6670 1.349688 TCGATTACTGTTGGTGGCCTT 59.650 47.619 3.32 0.00 0.00 4.35
2051 6671 0.981183 TCGATTACTGTTGGTGGCCT 59.019 50.000 3.32 0.00 0.00 5.19
2052 6672 1.066430 TCTCGATTACTGTTGGTGGCC 60.066 52.381 0.00 0.00 0.00 5.36
2053 6673 2.000447 GTCTCGATTACTGTTGGTGGC 59.000 52.381 0.00 0.00 0.00 5.01
2055 6675 5.666969 TTTTGTCTCGATTACTGTTGGTG 57.333 39.130 0.00 0.00 0.00 4.17
2056 6676 6.877611 ATTTTTGTCTCGATTACTGTTGGT 57.122 33.333 0.00 0.00 0.00 3.67
2057 6677 9.840427 ATTAATTTTTGTCTCGATTACTGTTGG 57.160 29.630 0.00 0.00 0.00 3.77
2070 6690 9.965824 ACGAGAAAACATCATTAATTTTTGTCT 57.034 25.926 13.79 4.23 32.06 3.41
2079 6699 8.609176 GGTGCTAATACGAGAAAACATCATTAA 58.391 33.333 0.00 0.00 0.00 1.40
2080 6700 7.985184 AGGTGCTAATACGAGAAAACATCATTA 59.015 33.333 0.00 0.00 0.00 1.90
2081 6701 6.823689 AGGTGCTAATACGAGAAAACATCATT 59.176 34.615 0.00 0.00 0.00 2.57
2082 6702 6.349300 AGGTGCTAATACGAGAAAACATCAT 58.651 36.000 0.00 0.00 0.00 2.45
2083 6703 5.730550 AGGTGCTAATACGAGAAAACATCA 58.269 37.500 0.00 0.00 0.00 3.07
2084 6704 6.092259 ACAAGGTGCTAATACGAGAAAACATC 59.908 38.462 0.00 0.00 0.00 3.06
2085 6705 5.938125 ACAAGGTGCTAATACGAGAAAACAT 59.062 36.000 0.00 0.00 0.00 2.71
2086 6706 5.302360 ACAAGGTGCTAATACGAGAAAACA 58.698 37.500 0.00 0.00 0.00 2.83
2087 6707 5.857822 ACAAGGTGCTAATACGAGAAAAC 57.142 39.130 0.00 0.00 0.00 2.43
2088 6708 6.870971 AAACAAGGTGCTAATACGAGAAAA 57.129 33.333 0.00 0.00 0.00 2.29
2089 6709 7.966246 TTAAACAAGGTGCTAATACGAGAAA 57.034 32.000 0.00 0.00 0.00 2.52
2090 6710 9.090692 GTATTAAACAAGGTGCTAATACGAGAA 57.909 33.333 0.00 0.00 31.26 2.87
2091 6711 8.472413 AGTATTAAACAAGGTGCTAATACGAGA 58.528 33.333 0.00 0.00 40.09 4.04
2092 6712 8.644318 AGTATTAAACAAGGTGCTAATACGAG 57.356 34.615 0.00 0.00 40.09 4.18
2098 6718 9.509956 ACATGTAAGTATTAAACAAGGTGCTAA 57.490 29.630 0.00 0.00 28.70 3.09
2099 6719 8.941977 CACATGTAAGTATTAAACAAGGTGCTA 58.058 33.333 0.00 0.00 30.82 3.49
2100 6720 7.447238 ACACATGTAAGTATTAAACAAGGTGCT 59.553 33.333 0.00 0.00 36.63 4.40
2101 6721 7.537306 CACACATGTAAGTATTAAACAAGGTGC 59.463 37.037 0.00 0.00 36.63 5.01
2102 6722 8.779303 TCACACATGTAAGTATTAAACAAGGTG 58.221 33.333 0.00 0.00 37.94 4.00
2103 6723 8.911918 TCACACATGTAAGTATTAAACAAGGT 57.088 30.769 0.00 0.00 28.70 3.50
2104 6724 9.825972 CTTCACACATGTAAGTATTAAACAAGG 57.174 33.333 0.00 0.00 28.70 3.61
2109 6729 9.952030 TGGATCTTCACACATGTAAGTATTAAA 57.048 29.630 0.00 0.00 28.70 1.52
2110 6730 9.378551 GTGGATCTTCACACATGTAAGTATTAA 57.621 33.333 0.00 0.00 37.54 1.40
2111 6731 8.758829 AGTGGATCTTCACACATGTAAGTATTA 58.241 33.333 0.00 0.00 39.99 0.98
2112 6732 7.550551 CAGTGGATCTTCACACATGTAAGTATT 59.449 37.037 0.00 0.00 39.99 1.89
2113 6733 7.044181 CAGTGGATCTTCACACATGTAAGTAT 58.956 38.462 0.00 0.00 39.99 2.12
2114 6734 6.210584 TCAGTGGATCTTCACACATGTAAGTA 59.789 38.462 0.00 0.00 39.99 2.24
2115 6735 5.012046 TCAGTGGATCTTCACACATGTAAGT 59.988 40.000 0.00 0.00 39.99 2.24
2116 6736 5.482006 TCAGTGGATCTTCACACATGTAAG 58.518 41.667 0.00 0.00 39.99 2.34
2117 6737 5.482163 TCAGTGGATCTTCACACATGTAA 57.518 39.130 0.00 0.00 39.99 2.41
2118 6738 5.682234 ATCAGTGGATCTTCACACATGTA 57.318 39.130 0.00 0.00 39.99 2.29
2119 6739 4.564782 ATCAGTGGATCTTCACACATGT 57.435 40.909 0.00 0.00 39.99 3.21
2193 6814 6.455360 TCGTTAACGTGATACTAATCCCTT 57.545 37.500 25.98 0.00 40.80 3.95
2351 6972 6.461788 CCGTGGTATTCCTCCTTTTTGAAAAA 60.462 38.462 2.83 2.83 34.23 1.94
2373 6994 2.437359 GCTTGATGCAGAGGCCGT 60.437 61.111 0.00 0.00 42.31 5.68
2395 7019 8.265165 ACTTGAACGAACTTAAAGAAGTCTTT 57.735 30.769 10.92 10.92 45.50 2.52
2430 7055 4.096311 AGCGCGCGTAGATGTTAATATAG 58.904 43.478 32.35 0.00 0.00 1.31
2448 7073 9.884465 AATCTAATGAAACTAATTTGATAGCGC 57.116 29.630 0.00 0.00 31.90 5.92
2500 7126 4.132336 GTTTTGGGACGGAGGGATTATAC 58.868 47.826 0.00 0.00 0.00 1.47
2505 7131 0.774908 TTGTTTTGGGACGGAGGGAT 59.225 50.000 0.00 0.00 0.00 3.85
2529 7155 3.904234 GTCCGTTTCAAAATAAGTGTCGC 59.096 43.478 0.00 0.00 0.00 5.19
2530 7156 4.138817 CGTCCGTTTCAAAATAAGTGTCG 58.861 43.478 0.00 0.00 0.00 4.35
2544 7189 2.980568 TCAAATATGCTCCGTCCGTTT 58.019 42.857 0.00 0.00 0.00 3.60
2624 7275 7.336161 TCCAAATTACTCGAAGTTCCAAAAA 57.664 32.000 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.