Multiple sequence alignment - TraesCS1D01G189900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G189900 chr1D 100.000 2826 0 0 1 2826 262250781 262247956 0.000000e+00 5219
1 TraesCS1D01G189900 chr1B 91.824 1480 58 22 1407 2826 349570273 349571749 0.000000e+00 2004
2 TraesCS1D01G189900 chr1B 91.892 555 44 1 1 554 597429683 597430237 0.000000e+00 774
3 TraesCS1D01G189900 chr1B 94.215 484 24 2 865 1344 349569324 349569807 0.000000e+00 736
4 TraesCS1D01G189900 chr1B 90.076 131 13 0 2632 2762 349573344 349573474 1.350000e-38 171
5 TraesCS1D01G189900 chr1A 93.341 856 56 1 1972 2826 337677089 337677944 0.000000e+00 1264
6 TraesCS1D01G189900 chr1A 93.276 580 27 5 1407 1974 337676357 337676936 0.000000e+00 845
7 TraesCS1D01G189900 chr1A 90.728 151 13 1 1209 1358 337676204 337676354 1.720000e-47 200
8 TraesCS1D01G189900 chr1A 92.063 126 10 0 2635 2760 337679654 337679779 8.040000e-41 178
9 TraesCS1D01G189900 chr3D 93.098 594 30 6 1 584 538055633 538056225 0.000000e+00 859
10 TraesCS1D01G189900 chr3D 92.806 556 38 1 1 554 94491121 94490566 0.000000e+00 804
11 TraesCS1D01G189900 chr3D 76.923 247 52 3 1080 1325 544353511 544353753 4.910000e-28 135
12 TraesCS1D01G189900 chr7D 91.837 588 37 6 7 584 235405945 235406531 0.000000e+00 809
13 TraesCS1D01G189900 chr7D 90.741 594 44 4 1 584 227564062 227563470 0.000000e+00 782
14 TraesCS1D01G189900 chr7D 81.731 208 34 4 1123 1328 26494313 26494518 1.350000e-38 171
15 TraesCS1D01G189900 chr5A 91.047 592 38 9 1 580 563844796 563845384 0.000000e+00 785
16 TraesCS1D01G189900 chr2B 92.252 555 37 4 1 554 152470000 152469451 0.000000e+00 782
17 TraesCS1D01G189900 chr6A 92.072 555 41 2 1 554 473159642 473159090 0.000000e+00 778
18 TraesCS1D01G189900 chr4D 91.892 555 43 2 1 554 470141036 470141589 0.000000e+00 774
19 TraesCS1D01G189900 chr7A 77.600 250 49 5 1080 1324 709825149 709825396 8.160000e-31 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G189900 chr1D 262247956 262250781 2825 True 5219.000000 5219 100.000000 1 2826 1 chr1D.!!$R1 2825
1 TraesCS1D01G189900 chr1B 349569324 349573474 4150 False 970.333333 2004 92.038333 865 2826 3 chr1B.!!$F2 1961
2 TraesCS1D01G189900 chr1B 597429683 597430237 554 False 774.000000 774 91.892000 1 554 1 chr1B.!!$F1 553
3 TraesCS1D01G189900 chr1A 337676204 337679779 3575 False 621.750000 1264 92.352000 1209 2826 4 chr1A.!!$F1 1617
4 TraesCS1D01G189900 chr3D 538055633 538056225 592 False 859.000000 859 93.098000 1 584 1 chr3D.!!$F1 583
5 TraesCS1D01G189900 chr3D 94490566 94491121 555 True 804.000000 804 92.806000 1 554 1 chr3D.!!$R1 553
6 TraesCS1D01G189900 chr7D 235405945 235406531 586 False 809.000000 809 91.837000 7 584 1 chr7D.!!$F2 577
7 TraesCS1D01G189900 chr7D 227563470 227564062 592 True 782.000000 782 90.741000 1 584 1 chr7D.!!$R1 583
8 TraesCS1D01G189900 chr5A 563844796 563845384 588 False 785.000000 785 91.047000 1 580 1 chr5A.!!$F1 579
9 TraesCS1D01G189900 chr2B 152469451 152470000 549 True 782.000000 782 92.252000 1 554 1 chr2B.!!$R1 553
10 TraesCS1D01G189900 chr6A 473159090 473159642 552 True 778.000000 778 92.072000 1 554 1 chr6A.!!$R1 553
11 TraesCS1D01G189900 chr4D 470141036 470141589 553 False 774.000000 774 91.892000 1 554 1 chr4D.!!$F1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
778 792 0.027586 GTTTCGTGGCCGATATGCAC 59.972 55.0 0.0 0.0 43.8 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2640 3260 0.744414 GTGGATGGAGCGCTTTAGCA 60.744 55.0 13.26 0.0 42.21 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 4.624452 AGAAACTTAATAGACGTTCGTGCC 59.376 41.667 1.74 0.00 0.00 5.01
120 121 0.036294 AACTAGAGGGGAAGCAACGC 60.036 55.000 0.00 0.00 0.00 4.84
171 172 9.774413 AGAAAGAAGAATGCAAAATCAAGAATT 57.226 25.926 0.00 0.00 0.00 2.17
174 175 9.550406 AAGAAGAATGCAAAATCAAGAATTCAA 57.450 25.926 8.44 0.00 33.11 2.69
244 245 6.823689 GGAGCAGTTATGGAAGTTAGAAATCA 59.176 38.462 0.00 0.00 0.00 2.57
285 286 7.654022 ATGGTTCTTGTTTTCTTTGGTCTTA 57.346 32.000 0.00 0.00 0.00 2.10
320 321 7.698130 GCAAAGATTTGGTGATGTCTTATGTAC 59.302 37.037 7.38 0.00 38.57 2.90
324 325 5.708736 TTGGTGATGTCTTATGTACCCAT 57.291 39.130 0.00 0.00 34.97 4.00
580 594 1.340889 GGGTCTGCTAGAGATGCTCTG 59.659 57.143 7.19 0.00 41.37 3.35
582 596 2.692557 GGTCTGCTAGAGATGCTCTGAA 59.307 50.000 7.19 0.00 41.37 3.02
583 597 3.243501 GGTCTGCTAGAGATGCTCTGAAG 60.244 52.174 7.19 0.00 41.37 3.02
584 598 3.631686 GTCTGCTAGAGATGCTCTGAAGA 59.368 47.826 7.19 4.41 41.37 2.87
585 599 4.279169 GTCTGCTAGAGATGCTCTGAAGAT 59.721 45.833 7.19 0.00 41.37 2.40
586 600 4.520111 TCTGCTAGAGATGCTCTGAAGATC 59.480 45.833 7.19 0.00 41.37 2.75
587 601 4.213513 TGCTAGAGATGCTCTGAAGATCA 58.786 43.478 7.19 0.00 41.37 2.92
588 602 4.833938 TGCTAGAGATGCTCTGAAGATCAT 59.166 41.667 7.19 0.00 41.37 2.45
589 603 5.047872 TGCTAGAGATGCTCTGAAGATCATC 60.048 44.000 13.74 13.74 43.97 2.92
590 604 5.047872 GCTAGAGATGCTCTGAAGATCATCA 60.048 44.000 20.49 0.01 45.26 3.07
591 605 6.350696 GCTAGAGATGCTCTGAAGATCATCAT 60.351 42.308 20.49 13.43 45.26 2.45
592 606 6.428083 AGAGATGCTCTGAAGATCATCATT 57.572 37.500 20.49 9.46 45.26 2.57
593 607 6.833041 AGAGATGCTCTGAAGATCATCATTT 58.167 36.000 20.49 5.79 45.26 2.32
594 608 7.284074 AGAGATGCTCTGAAGATCATCATTTT 58.716 34.615 20.49 5.51 45.26 1.82
595 609 7.776030 AGAGATGCTCTGAAGATCATCATTTTT 59.224 33.333 20.49 5.22 45.26 1.94
596 610 7.932335 AGATGCTCTGAAGATCATCATTTTTC 58.068 34.615 20.49 0.55 45.26 2.29
597 611 7.776030 AGATGCTCTGAAGATCATCATTTTTCT 59.224 33.333 20.49 2.47 45.26 2.52
598 612 7.698506 TGCTCTGAAGATCATCATTTTTCTT 57.301 32.000 0.30 0.00 0.00 2.52
599 613 7.759465 TGCTCTGAAGATCATCATTTTTCTTC 58.241 34.615 0.30 4.91 42.74 2.87
600 614 7.148120 TGCTCTGAAGATCATCATTTTTCTTCC 60.148 37.037 0.30 0.00 42.09 3.46
601 615 7.148120 GCTCTGAAGATCATCATTTTTCTTCCA 60.148 37.037 0.30 0.00 42.09 3.53
602 616 8.818622 TCTGAAGATCATCATTTTTCTTCCAT 57.181 30.769 0.30 0.00 42.09 3.41
603 617 8.900781 TCTGAAGATCATCATTTTTCTTCCATC 58.099 33.333 0.30 0.00 42.09 3.51
604 618 8.818622 TGAAGATCATCATTTTTCTTCCATCT 57.181 30.769 0.00 0.00 42.09 2.90
605 619 8.900781 TGAAGATCATCATTTTTCTTCCATCTC 58.099 33.333 0.00 0.00 42.09 2.75
606 620 7.493743 AGATCATCATTTTTCTTCCATCTCG 57.506 36.000 0.00 0.00 0.00 4.04
607 621 7.052873 AGATCATCATTTTTCTTCCATCTCGT 58.947 34.615 0.00 0.00 0.00 4.18
608 622 7.555554 AGATCATCATTTTTCTTCCATCTCGTT 59.444 33.333 0.00 0.00 0.00 3.85
609 623 6.845302 TCATCATTTTTCTTCCATCTCGTTG 58.155 36.000 0.00 0.00 0.00 4.10
610 624 5.627499 TCATTTTTCTTCCATCTCGTTGG 57.373 39.130 0.00 0.00 38.18 3.77
611 625 5.070001 TCATTTTTCTTCCATCTCGTTGGT 58.930 37.500 2.60 0.00 38.01 3.67
612 626 4.829064 TTTTTCTTCCATCTCGTTGGTG 57.171 40.909 2.60 0.00 38.01 4.17
613 627 3.485463 TTTCTTCCATCTCGTTGGTGT 57.515 42.857 2.60 0.00 38.01 4.16
614 628 4.610605 TTTCTTCCATCTCGTTGGTGTA 57.389 40.909 2.60 0.00 38.01 2.90
615 629 4.819105 TTCTTCCATCTCGTTGGTGTAT 57.181 40.909 2.60 0.00 38.01 2.29
616 630 4.386867 TCTTCCATCTCGTTGGTGTATC 57.613 45.455 2.60 0.00 38.01 2.24
617 631 4.023980 TCTTCCATCTCGTTGGTGTATCT 58.976 43.478 2.60 0.00 38.01 1.98
618 632 3.801114 TCCATCTCGTTGGTGTATCTG 57.199 47.619 2.60 0.00 38.01 2.90
619 633 3.096852 TCCATCTCGTTGGTGTATCTGT 58.903 45.455 2.60 0.00 38.01 3.41
620 634 3.513912 TCCATCTCGTTGGTGTATCTGTT 59.486 43.478 2.60 0.00 38.01 3.16
621 635 4.020573 TCCATCTCGTTGGTGTATCTGTTT 60.021 41.667 2.60 0.00 38.01 2.83
622 636 4.093408 CCATCTCGTTGGTGTATCTGTTTG 59.907 45.833 0.00 0.00 31.74 2.93
623 637 4.594123 TCTCGTTGGTGTATCTGTTTGA 57.406 40.909 0.00 0.00 0.00 2.69
624 638 4.951254 TCTCGTTGGTGTATCTGTTTGAA 58.049 39.130 0.00 0.00 0.00 2.69
625 639 4.988540 TCTCGTTGGTGTATCTGTTTGAAG 59.011 41.667 0.00 0.00 0.00 3.02
626 640 3.496884 TCGTTGGTGTATCTGTTTGAAGC 59.503 43.478 0.00 0.00 0.00 3.86
627 641 3.249799 CGTTGGTGTATCTGTTTGAAGCA 59.750 43.478 0.00 0.00 0.00 3.91
628 642 4.260990 CGTTGGTGTATCTGTTTGAAGCAA 60.261 41.667 0.00 0.00 0.00 3.91
629 643 5.215160 GTTGGTGTATCTGTTTGAAGCAAG 58.785 41.667 0.00 0.00 0.00 4.01
630 644 4.460263 TGGTGTATCTGTTTGAAGCAAGT 58.540 39.130 0.00 0.00 0.00 3.16
631 645 4.275689 TGGTGTATCTGTTTGAAGCAAGTG 59.724 41.667 0.00 0.00 0.00 3.16
632 646 4.515191 GGTGTATCTGTTTGAAGCAAGTGA 59.485 41.667 0.00 0.00 0.00 3.41
633 647 5.182001 GGTGTATCTGTTTGAAGCAAGTGAT 59.818 40.000 0.00 0.00 0.00 3.06
634 648 6.082338 GTGTATCTGTTTGAAGCAAGTGATG 58.918 40.000 0.00 0.00 0.00 3.07
647 661 4.642445 CAAGTGATGCCTGAATAATGCA 57.358 40.909 0.00 0.00 39.68 3.96
648 662 4.357142 CAAGTGATGCCTGAATAATGCAC 58.643 43.478 0.00 0.00 37.92 4.57
649 663 3.894759 AGTGATGCCTGAATAATGCACT 58.105 40.909 0.00 0.00 37.92 4.40
650 664 3.881688 AGTGATGCCTGAATAATGCACTC 59.118 43.478 0.00 0.00 37.92 3.51
651 665 3.628942 GTGATGCCTGAATAATGCACTCA 59.371 43.478 0.00 0.00 37.92 3.41
652 666 3.628942 TGATGCCTGAATAATGCACTCAC 59.371 43.478 0.00 0.00 37.92 3.51
653 667 3.070476 TGCCTGAATAATGCACTCACA 57.930 42.857 0.00 0.00 0.00 3.58
654 668 2.749076 TGCCTGAATAATGCACTCACAC 59.251 45.455 0.00 0.00 0.00 3.82
655 669 2.223112 GCCTGAATAATGCACTCACACG 60.223 50.000 0.00 0.00 0.00 4.49
656 670 3.261580 CCTGAATAATGCACTCACACGA 58.738 45.455 0.00 0.00 0.00 4.35
657 671 3.062639 CCTGAATAATGCACTCACACGAC 59.937 47.826 0.00 0.00 0.00 4.34
658 672 3.658709 TGAATAATGCACTCACACGACA 58.341 40.909 0.00 0.00 0.00 4.35
659 673 3.431912 TGAATAATGCACTCACACGACAC 59.568 43.478 0.00 0.00 0.00 3.67
660 674 2.517650 TAATGCACTCACACGACACA 57.482 45.000 0.00 0.00 0.00 3.72
661 675 1.882912 AATGCACTCACACGACACAT 58.117 45.000 0.00 0.00 0.00 3.21
662 676 1.432514 ATGCACTCACACGACACATC 58.567 50.000 0.00 0.00 0.00 3.06
663 677 0.389025 TGCACTCACACGACACATCT 59.611 50.000 0.00 0.00 0.00 2.90
664 678 1.063806 GCACTCACACGACACATCTC 58.936 55.000 0.00 0.00 0.00 2.75
665 679 1.336332 GCACTCACACGACACATCTCT 60.336 52.381 0.00 0.00 0.00 3.10
666 680 2.323059 CACTCACACGACACATCTCTG 58.677 52.381 0.00 0.00 0.00 3.35
667 681 1.336332 ACTCACACGACACATCTCTGC 60.336 52.381 0.00 0.00 0.00 4.26
668 682 0.673437 TCACACGACACATCTCTGCA 59.327 50.000 0.00 0.00 0.00 4.41
669 683 1.273327 TCACACGACACATCTCTGCAT 59.727 47.619 0.00 0.00 0.00 3.96
670 684 2.491693 TCACACGACACATCTCTGCATA 59.508 45.455 0.00 0.00 0.00 3.14
671 685 3.056891 TCACACGACACATCTCTGCATAA 60.057 43.478 0.00 0.00 0.00 1.90
672 686 3.679502 CACACGACACATCTCTGCATAAA 59.320 43.478 0.00 0.00 0.00 1.40
673 687 4.330894 CACACGACACATCTCTGCATAAAT 59.669 41.667 0.00 0.00 0.00 1.40
674 688 4.568359 ACACGACACATCTCTGCATAAATC 59.432 41.667 0.00 0.00 0.00 2.17
675 689 4.807834 CACGACACATCTCTGCATAAATCT 59.192 41.667 0.00 0.00 0.00 2.40
676 690 5.046529 ACGACACATCTCTGCATAAATCTC 58.953 41.667 0.00 0.00 0.00 2.75
677 691 4.447054 CGACACATCTCTGCATAAATCTCC 59.553 45.833 0.00 0.00 0.00 3.71
678 692 5.363101 GACACATCTCTGCATAAATCTCCA 58.637 41.667 0.00 0.00 0.00 3.86
679 693 5.748402 ACACATCTCTGCATAAATCTCCAA 58.252 37.500 0.00 0.00 0.00 3.53
680 694 5.587844 ACACATCTCTGCATAAATCTCCAAC 59.412 40.000 0.00 0.00 0.00 3.77
681 695 4.813161 ACATCTCTGCATAAATCTCCAACG 59.187 41.667 0.00 0.00 0.00 4.10
682 696 4.736126 TCTCTGCATAAATCTCCAACGA 57.264 40.909 0.00 0.00 0.00 3.85
683 697 5.282055 TCTCTGCATAAATCTCCAACGAT 57.718 39.130 0.00 0.00 0.00 3.73
684 698 6.405278 TCTCTGCATAAATCTCCAACGATA 57.595 37.500 0.00 0.00 0.00 2.92
685 699 6.997655 TCTCTGCATAAATCTCCAACGATAT 58.002 36.000 0.00 0.00 0.00 1.63
686 700 7.445121 TCTCTGCATAAATCTCCAACGATATT 58.555 34.615 0.00 0.00 0.00 1.28
687 701 7.933577 TCTCTGCATAAATCTCCAACGATATTT 59.066 33.333 0.00 0.00 31.72 1.40
688 702 9.208022 CTCTGCATAAATCTCCAACGATATTTA 57.792 33.333 0.00 0.00 33.84 1.40
689 703 8.988934 TCTGCATAAATCTCCAACGATATTTAC 58.011 33.333 0.00 0.00 32.78 2.01
690 704 8.094798 TGCATAAATCTCCAACGATATTTACC 57.905 34.615 0.00 0.00 32.78 2.85
691 705 7.717436 TGCATAAATCTCCAACGATATTTACCA 59.283 33.333 0.00 0.00 32.78 3.25
692 706 8.015658 GCATAAATCTCCAACGATATTTACCAC 58.984 37.037 0.00 0.00 32.78 4.16
693 707 9.273016 CATAAATCTCCAACGATATTTACCACT 57.727 33.333 0.00 0.00 32.78 4.00
694 708 9.847224 ATAAATCTCCAACGATATTTACCACTT 57.153 29.630 0.00 0.00 32.78 3.16
695 709 7.787725 AATCTCCAACGATATTTACCACTTC 57.212 36.000 0.00 0.00 0.00 3.01
696 710 6.288941 TCTCCAACGATATTTACCACTTCA 57.711 37.500 0.00 0.00 0.00 3.02
697 711 6.703319 TCTCCAACGATATTTACCACTTCAA 58.297 36.000 0.00 0.00 0.00 2.69
698 712 7.162761 TCTCCAACGATATTTACCACTTCAAA 58.837 34.615 0.00 0.00 0.00 2.69
699 713 7.662258 TCTCCAACGATATTTACCACTTCAAAA 59.338 33.333 0.00 0.00 0.00 2.44
700 714 8.167605 TCCAACGATATTTACCACTTCAAAAA 57.832 30.769 0.00 0.00 0.00 1.94
701 715 8.798402 TCCAACGATATTTACCACTTCAAAAAT 58.202 29.630 0.00 0.00 0.00 1.82
724 738 8.747538 AATAAATCAACCTTATATATCCGCCC 57.252 34.615 0.00 0.00 0.00 6.13
725 739 5.772393 AATCAACCTTATATATCCGCCCA 57.228 39.130 0.00 0.00 0.00 5.36
726 740 5.772393 ATCAACCTTATATATCCGCCCAA 57.228 39.130 0.00 0.00 0.00 4.12
727 741 4.901868 TCAACCTTATATATCCGCCCAAC 58.098 43.478 0.00 0.00 0.00 3.77
728 742 4.348461 TCAACCTTATATATCCGCCCAACA 59.652 41.667 0.00 0.00 0.00 3.33
729 743 5.013704 TCAACCTTATATATCCGCCCAACAT 59.986 40.000 0.00 0.00 0.00 2.71
730 744 5.099042 ACCTTATATATCCGCCCAACATC 57.901 43.478 0.00 0.00 0.00 3.06
731 745 4.534500 ACCTTATATATCCGCCCAACATCA 59.466 41.667 0.00 0.00 0.00 3.07
732 746 5.013704 ACCTTATATATCCGCCCAACATCAA 59.986 40.000 0.00 0.00 0.00 2.57
733 747 5.943416 CCTTATATATCCGCCCAACATCAAA 59.057 40.000 0.00 0.00 0.00 2.69
734 748 6.128007 CCTTATATATCCGCCCAACATCAAAC 60.128 42.308 0.00 0.00 0.00 2.93
735 749 1.374560 TATCCGCCCAACATCAAACG 58.625 50.000 0.00 0.00 0.00 3.60
736 750 0.322098 ATCCGCCCAACATCAAACGA 60.322 50.000 0.00 0.00 0.00 3.85
737 751 1.209127 CCGCCCAACATCAAACGAC 59.791 57.895 0.00 0.00 0.00 4.34
738 752 1.511318 CCGCCCAACATCAAACGACA 61.511 55.000 0.00 0.00 0.00 4.35
739 753 0.385473 CGCCCAACATCAAACGACAC 60.385 55.000 0.00 0.00 0.00 3.67
740 754 0.951558 GCCCAACATCAAACGACACT 59.048 50.000 0.00 0.00 0.00 3.55
741 755 2.147958 GCCCAACATCAAACGACACTA 58.852 47.619 0.00 0.00 0.00 2.74
742 756 2.747446 GCCCAACATCAAACGACACTAT 59.253 45.455 0.00 0.00 0.00 2.12
743 757 3.190535 GCCCAACATCAAACGACACTATT 59.809 43.478 0.00 0.00 0.00 1.73
744 758 4.320935 GCCCAACATCAAACGACACTATTT 60.321 41.667 0.00 0.00 0.00 1.40
745 759 5.106475 GCCCAACATCAAACGACACTATTTA 60.106 40.000 0.00 0.00 0.00 1.40
746 760 6.404293 GCCCAACATCAAACGACACTATTTAT 60.404 38.462 0.00 0.00 0.00 1.40
747 761 7.186804 CCCAACATCAAACGACACTATTTATC 58.813 38.462 0.00 0.00 0.00 1.75
748 762 6.899771 CCAACATCAAACGACACTATTTATCG 59.100 38.462 0.00 0.00 41.60 2.92
749 763 7.201487 CCAACATCAAACGACACTATTTATCGA 60.201 37.037 0.00 0.00 39.16 3.59
750 764 7.821595 ACATCAAACGACACTATTTATCGAA 57.178 32.000 0.00 0.00 39.16 3.71
751 765 8.246908 ACATCAAACGACACTATTTATCGAAA 57.753 30.769 0.00 0.00 39.16 3.46
752 766 8.166706 ACATCAAACGACACTATTTATCGAAAC 58.833 33.333 0.00 0.00 39.16 2.78
753 767 7.878477 TCAAACGACACTATTTATCGAAACT 57.122 32.000 0.00 0.00 39.16 2.66
754 768 7.726079 TCAAACGACACTATTTATCGAAACTG 58.274 34.615 0.00 0.00 39.16 3.16
755 769 5.697848 ACGACACTATTTATCGAAACTGC 57.302 39.130 0.00 0.00 39.16 4.40
756 770 5.408356 ACGACACTATTTATCGAAACTGCT 58.592 37.500 0.00 0.00 39.16 4.24
757 771 5.515626 ACGACACTATTTATCGAAACTGCTC 59.484 40.000 0.00 0.00 39.16 4.26
758 772 5.744345 CGACACTATTTATCGAAACTGCTCT 59.256 40.000 0.00 0.00 38.10 4.09
759 773 6.291322 CGACACTATTTATCGAAACTGCTCTG 60.291 42.308 0.00 0.00 38.10 3.35
760 774 6.398918 ACACTATTTATCGAAACTGCTCTGT 58.601 36.000 0.00 0.00 0.00 3.41
761 775 6.874134 ACACTATTTATCGAAACTGCTCTGTT 59.126 34.615 0.00 0.00 0.00 3.16
762 776 7.387948 ACACTATTTATCGAAACTGCTCTGTTT 59.612 33.333 4.86 4.86 42.11 2.83
767 781 2.670401 GAAACTGCTCTGTTTCGTGG 57.330 50.000 13.79 0.00 43.85 4.94
768 782 0.663153 AAACTGCTCTGTTTCGTGGC 59.337 50.000 0.00 0.00 35.50 5.01
769 783 1.166531 AACTGCTCTGTTTCGTGGCC 61.167 55.000 0.00 0.00 0.00 5.36
770 784 2.664851 TGCTCTGTTTCGTGGCCG 60.665 61.111 0.00 0.00 0.00 6.13
771 785 2.357034 GCTCTGTTTCGTGGCCGA 60.357 61.111 0.00 0.00 42.41 5.54
772 786 1.741770 GCTCTGTTTCGTGGCCGAT 60.742 57.895 0.00 0.00 43.80 4.18
773 787 0.459585 GCTCTGTTTCGTGGCCGATA 60.460 55.000 0.00 0.00 43.80 2.92
774 788 1.806623 GCTCTGTTTCGTGGCCGATAT 60.807 52.381 0.00 0.00 43.80 1.63
775 789 1.860950 CTCTGTTTCGTGGCCGATATG 59.139 52.381 0.00 0.00 43.80 1.78
776 790 0.304705 CTGTTTCGTGGCCGATATGC 59.695 55.000 0.00 0.00 43.80 3.14
777 791 0.391793 TGTTTCGTGGCCGATATGCA 60.392 50.000 0.00 0.00 43.80 3.96
778 792 0.027586 GTTTCGTGGCCGATATGCAC 59.972 55.000 0.00 0.00 43.80 4.57
779 793 1.092921 TTTCGTGGCCGATATGCACC 61.093 55.000 0.00 0.00 43.80 5.01
780 794 2.933878 TTCGTGGCCGATATGCACCC 62.934 60.000 0.00 0.00 43.80 4.61
781 795 2.972505 GTGGCCGATATGCACCCG 60.973 66.667 0.00 0.00 0.00 5.28
782 796 3.157949 TGGCCGATATGCACCCGA 61.158 61.111 0.00 0.00 0.00 5.14
783 797 2.665185 GGCCGATATGCACCCGAC 60.665 66.667 5.88 0.00 0.00 4.79
784 798 2.108157 GCCGATATGCACCCGACA 59.892 61.111 5.88 0.00 0.00 4.35
785 799 2.244651 GCCGATATGCACCCGACAC 61.245 63.158 5.88 0.00 0.00 3.67
786 800 1.441729 CCGATATGCACCCGACACT 59.558 57.895 5.88 0.00 0.00 3.55
787 801 0.179084 CCGATATGCACCCGACACTT 60.179 55.000 5.88 0.00 0.00 3.16
788 802 0.930310 CGATATGCACCCGACACTTG 59.070 55.000 0.00 0.00 0.00 3.16
789 803 1.470805 CGATATGCACCCGACACTTGA 60.471 52.381 0.00 0.00 0.00 3.02
790 804 2.627945 GATATGCACCCGACACTTGAA 58.372 47.619 0.00 0.00 0.00 2.69
791 805 2.779755 TATGCACCCGACACTTGAAT 57.220 45.000 0.00 0.00 0.00 2.57
792 806 1.453155 ATGCACCCGACACTTGAATC 58.547 50.000 0.00 0.00 0.00 2.52
793 807 0.605319 TGCACCCGACACTTGAATCC 60.605 55.000 0.00 0.00 0.00 3.01
794 808 0.605319 GCACCCGACACTTGAATCCA 60.605 55.000 0.00 0.00 0.00 3.41
795 809 1.442769 CACCCGACACTTGAATCCAG 58.557 55.000 0.00 0.00 0.00 3.86
796 810 0.321653 ACCCGACACTTGAATCCAGC 60.322 55.000 0.00 0.00 0.00 4.85
797 811 0.036010 CCCGACACTTGAATCCAGCT 60.036 55.000 0.00 0.00 0.00 4.24
798 812 1.081892 CCGACACTTGAATCCAGCTG 58.918 55.000 6.78 6.78 0.00 4.24
799 813 1.081892 CGACACTTGAATCCAGCTGG 58.918 55.000 27.87 27.87 0.00 4.85
800 814 1.457346 GACACTTGAATCCAGCTGGG 58.543 55.000 32.23 17.30 35.41 4.45
801 815 0.773644 ACACTTGAATCCAGCTGGGT 59.226 50.000 32.23 24.65 38.11 4.51
802 816 1.985159 ACACTTGAATCCAGCTGGGTA 59.015 47.619 32.23 15.19 38.11 3.69
803 817 2.026822 ACACTTGAATCCAGCTGGGTAG 60.027 50.000 32.23 21.65 38.11 3.18
804 818 2.237143 CACTTGAATCCAGCTGGGTAGA 59.763 50.000 32.23 13.96 38.11 2.59
805 819 2.912956 ACTTGAATCCAGCTGGGTAGAA 59.087 45.455 32.23 19.39 38.11 2.10
806 820 3.054802 ACTTGAATCCAGCTGGGTAGAAG 60.055 47.826 32.23 28.16 38.11 2.85
807 821 2.551270 TGAATCCAGCTGGGTAGAAGT 58.449 47.619 32.23 12.26 38.11 3.01
808 822 3.719871 TGAATCCAGCTGGGTAGAAGTA 58.280 45.455 32.23 11.11 38.11 2.24
809 823 4.298626 TGAATCCAGCTGGGTAGAAGTAT 58.701 43.478 32.23 13.07 38.11 2.12
810 824 5.464069 TGAATCCAGCTGGGTAGAAGTATA 58.536 41.667 32.23 9.50 38.11 1.47
811 825 5.304614 TGAATCCAGCTGGGTAGAAGTATAC 59.695 44.000 32.23 9.43 38.11 1.47
812 826 4.537945 TCCAGCTGGGTAGAAGTATACT 57.462 45.455 32.23 0.00 38.11 2.12
813 827 4.471548 TCCAGCTGGGTAGAAGTATACTC 58.528 47.826 32.23 0.20 38.11 2.59
814 828 3.574826 CCAGCTGGGTAGAAGTATACTCC 59.425 52.174 26.14 2.76 0.00 3.85
815 829 4.215908 CAGCTGGGTAGAAGTATACTCCA 58.784 47.826 5.57 7.88 0.00 3.86
816 830 4.038162 CAGCTGGGTAGAAGTATACTCCAC 59.962 50.000 5.57 4.57 0.00 4.02
817 831 3.321396 GCTGGGTAGAAGTATACTCCACC 59.679 52.174 16.66 16.66 0.00 4.61
818 832 4.543689 CTGGGTAGAAGTATACTCCACCA 58.456 47.826 22.35 17.19 0.00 4.17
819 833 5.148502 CTGGGTAGAAGTATACTCCACCAT 58.851 45.833 22.35 3.25 0.00 3.55
820 834 6.283948 TGGGTAGAAGTATACTCCACCATA 57.716 41.667 22.35 13.31 0.00 2.74
821 835 6.685541 TGGGTAGAAGTATACTCCACCATAA 58.314 40.000 22.35 11.25 0.00 1.90
822 836 7.310634 TGGGTAGAAGTATACTCCACCATAAT 58.689 38.462 22.35 1.41 0.00 1.28
823 837 7.234782 TGGGTAGAAGTATACTCCACCATAATG 59.765 40.741 22.35 0.00 0.00 1.90
824 838 7.234988 GGGTAGAAGTATACTCCACCATAATGT 59.765 40.741 22.35 2.83 0.00 2.71
825 839 8.088981 GGTAGAAGTATACTCCACCATAATGTG 58.911 40.741 18.69 0.00 35.98 3.21
826 840 6.525629 AGAAGTATACTCCACCATAATGTGC 58.474 40.000 5.70 0.00 34.85 4.57
827 841 4.883083 AGTATACTCCACCATAATGTGCG 58.117 43.478 0.00 0.00 34.85 5.34
828 842 1.948104 TACTCCACCATAATGTGCGC 58.052 50.000 0.00 0.00 34.85 6.09
829 843 0.253044 ACTCCACCATAATGTGCGCT 59.747 50.000 9.73 0.00 34.85 5.92
830 844 0.940126 CTCCACCATAATGTGCGCTC 59.060 55.000 9.73 5.51 34.85 5.03
831 845 0.541392 TCCACCATAATGTGCGCTCT 59.459 50.000 9.73 0.00 34.85 4.09
832 846 0.659427 CCACCATAATGTGCGCTCTG 59.341 55.000 9.73 0.00 34.85 3.35
833 847 1.655484 CACCATAATGTGCGCTCTGA 58.345 50.000 9.73 0.00 0.00 3.27
834 848 1.328680 CACCATAATGTGCGCTCTGAC 59.671 52.381 9.73 0.00 0.00 3.51
835 849 0.578683 CCATAATGTGCGCTCTGACG 59.421 55.000 9.73 0.00 0.00 4.35
836 850 1.280982 CATAATGTGCGCTCTGACGT 58.719 50.000 9.73 0.00 34.88 4.34
837 851 1.005662 CATAATGTGCGCTCTGACGTG 60.006 52.381 9.73 0.00 34.88 4.49
838 852 1.351430 TAATGTGCGCTCTGACGTGC 61.351 55.000 9.73 0.00 40.67 5.34
839 853 3.864160 ATGTGCGCTCTGACGTGCA 62.864 57.895 9.73 10.02 47.00 4.57
841 855 3.037833 TGCGCTCTGACGTGCAAG 61.038 61.111 9.73 0.00 46.28 4.01
842 856 2.734723 GCGCTCTGACGTGCAAGA 60.735 61.111 6.65 0.00 40.04 3.02
843 857 2.310233 GCGCTCTGACGTGCAAGAA 61.310 57.895 6.65 0.00 40.04 2.52
844 858 1.630244 GCGCTCTGACGTGCAAGAAT 61.630 55.000 6.65 0.00 40.04 2.40
845 859 1.629013 CGCTCTGACGTGCAAGAATA 58.371 50.000 6.65 0.00 0.00 1.75
846 860 1.585668 CGCTCTGACGTGCAAGAATAG 59.414 52.381 6.65 1.66 0.00 1.73
847 861 2.732282 CGCTCTGACGTGCAAGAATAGA 60.732 50.000 6.65 5.94 0.00 1.98
848 862 3.254060 GCTCTGACGTGCAAGAATAGAA 58.746 45.455 6.65 0.00 0.00 2.10
849 863 3.868077 GCTCTGACGTGCAAGAATAGAAT 59.132 43.478 6.65 0.00 0.00 2.40
850 864 5.043903 GCTCTGACGTGCAAGAATAGAATA 58.956 41.667 6.65 0.00 0.00 1.75
851 865 5.520288 GCTCTGACGTGCAAGAATAGAATAA 59.480 40.000 6.65 0.00 0.00 1.40
852 866 6.036083 GCTCTGACGTGCAAGAATAGAATAAA 59.964 38.462 6.65 0.00 0.00 1.40
853 867 7.254590 GCTCTGACGTGCAAGAATAGAATAAAT 60.255 37.037 6.65 0.00 0.00 1.40
854 868 8.492673 TCTGACGTGCAAGAATAGAATAAATT 57.507 30.769 6.65 0.00 0.00 1.82
855 869 9.594478 TCTGACGTGCAAGAATAGAATAAATTA 57.406 29.630 6.65 0.00 0.00 1.40
856 870 9.638300 CTGACGTGCAAGAATAGAATAAATTAC 57.362 33.333 6.65 0.00 0.00 1.89
857 871 9.157104 TGACGTGCAAGAATAGAATAAATTACA 57.843 29.630 6.65 0.00 0.00 2.41
860 874 9.306280 CGTGCAAGAATAGAATAAATTACATCG 57.694 33.333 0.00 0.00 0.00 3.84
885 899 3.562505 AGTACATCGTGTTTGACTCGTC 58.437 45.455 0.00 0.00 36.59 4.20
895 909 0.824595 TTGACTCGTCGACTTCCCCA 60.825 55.000 14.70 2.40 0.00 4.96
951 965 4.435386 CCAAAACGAAACACAAGCCAAAAG 60.435 41.667 0.00 0.00 0.00 2.27
990 1006 2.103941 TGAGACACACAGCCACATACAA 59.896 45.455 0.00 0.00 0.00 2.41
1005 1021 2.647683 TACAAACACAGGTGATGGCA 57.352 45.000 6.40 0.00 0.00 4.92
1035 1051 2.884685 CTGAAGCTGCTCGGCTCG 60.885 66.667 1.00 0.00 42.24 5.03
1065 1081 2.094675 CCATTTGCCACTAGGGTGAAG 58.905 52.381 0.00 0.00 45.61 3.02
1102 1118 1.017701 GGGCCTGAGGTACGAAAACG 61.018 60.000 0.84 0.00 0.00 3.60
1107 1123 2.325761 CTGAGGTACGAAAACGTGGAG 58.674 52.381 5.54 0.00 0.00 3.86
1134 1150 0.037882 TCTCCAACAAGAGCGAGCTG 60.038 55.000 0.84 0.00 33.66 4.24
1176 1192 0.106519 ACAAGAAGGTGCCAGTGCTT 60.107 50.000 0.00 0.00 38.71 3.91
1192 1208 2.006772 CTTATCCACAACGGCGCTC 58.993 57.895 6.90 0.00 33.14 5.03
1208 1224 3.916392 CTCCCGTGTGCGAGTCCAC 62.916 68.421 5.16 5.16 41.33 4.02
1209 1225 4.293648 CCCGTGTGCGAGTCCACA 62.294 66.667 9.55 9.55 42.99 4.17
1337 1353 4.607557 CGATGACAAGGTTTCACACGTTAC 60.608 45.833 0.00 0.00 32.07 2.50
1342 1358 4.569564 ACAAGGTTTCACACGTTACTCTTC 59.430 41.667 0.00 0.00 32.07 2.87
1345 1361 4.098960 AGGTTTCACACGTTACTCTTCTCA 59.901 41.667 0.00 0.00 0.00 3.27
1347 1363 5.118817 GGTTTCACACGTTACTCTTCTCATC 59.881 44.000 0.00 0.00 0.00 2.92
1354 1370 6.598457 ACACGTTACTCTTCTCATCTTAGCTA 59.402 38.462 0.00 0.00 0.00 3.32
1355 1371 6.908284 CACGTTACTCTTCTCATCTTAGCTAC 59.092 42.308 0.00 0.00 0.00 3.58
1356 1372 6.130723 CGTTACTCTTCTCATCTTAGCTACG 58.869 44.000 0.00 0.00 0.00 3.51
1357 1373 6.238157 CGTTACTCTTCTCATCTTAGCTACGT 60.238 42.308 0.00 0.00 0.00 3.57
1358 1374 5.493133 ACTCTTCTCATCTTAGCTACGTG 57.507 43.478 0.00 0.00 0.00 4.49
1359 1375 4.336993 ACTCTTCTCATCTTAGCTACGTGG 59.663 45.833 0.00 0.00 0.00 4.94
1360 1376 4.270834 TCTTCTCATCTTAGCTACGTGGT 58.729 43.478 0.00 0.00 0.00 4.16
1361 1377 5.434408 TCTTCTCATCTTAGCTACGTGGTA 58.566 41.667 0.00 0.00 0.00 3.25
1362 1378 6.062749 TCTTCTCATCTTAGCTACGTGGTAT 58.937 40.000 0.00 0.00 0.00 2.73
1363 1379 5.943706 TCTCATCTTAGCTACGTGGTATC 57.056 43.478 0.00 0.00 0.00 2.24
1364 1380 4.451435 TCTCATCTTAGCTACGTGGTATCG 59.549 45.833 0.00 0.00 0.00 2.92
1366 1382 4.451435 TCATCTTAGCTACGTGGTATCGAG 59.549 45.833 0.00 0.00 34.70 4.04
1368 1384 4.639334 TCTTAGCTACGTGGTATCGAGAT 58.361 43.478 0.00 0.00 34.70 2.75
1369 1385 4.689812 TCTTAGCTACGTGGTATCGAGATC 59.310 45.833 0.00 0.00 34.70 2.75
1370 1386 2.847441 AGCTACGTGGTATCGAGATCA 58.153 47.619 0.00 0.00 34.70 2.92
1371 1387 3.211865 AGCTACGTGGTATCGAGATCAA 58.788 45.455 0.00 0.00 34.70 2.57
1372 1388 3.821600 AGCTACGTGGTATCGAGATCAAT 59.178 43.478 0.00 0.00 34.70 2.57
1373 1389 4.278669 AGCTACGTGGTATCGAGATCAATT 59.721 41.667 0.00 0.00 34.70 2.32
1374 1390 4.982916 GCTACGTGGTATCGAGATCAATTT 59.017 41.667 0.00 0.00 34.70 1.82
1375 1391 6.016527 AGCTACGTGGTATCGAGATCAATTTA 60.017 38.462 0.00 0.00 34.70 1.40
1379 1395 5.926542 CGTGGTATCGAGATCAATTTATGGT 59.073 40.000 0.00 0.00 0.00 3.55
1380 1396 6.423905 CGTGGTATCGAGATCAATTTATGGTT 59.576 38.462 0.00 0.00 0.00 3.67
1381 1397 7.042051 CGTGGTATCGAGATCAATTTATGGTTT 60.042 37.037 0.00 0.00 0.00 3.27
1382 1398 8.070171 GTGGTATCGAGATCAATTTATGGTTTG 58.930 37.037 0.00 0.00 0.00 2.93
1385 1401 4.887071 TCGAGATCAATTTATGGTTTGGGG 59.113 41.667 0.00 0.00 0.00 4.96
1387 1403 4.623863 AGATCAATTTATGGTTTGGGGCT 58.376 39.130 0.00 0.00 0.00 5.19
1388 1404 5.032170 AGATCAATTTATGGTTTGGGGCTT 58.968 37.500 0.00 0.00 0.00 4.35
1389 1405 4.817318 TCAATTTATGGTTTGGGGCTTC 57.183 40.909 0.00 0.00 0.00 3.86
1391 1407 2.588464 TTTATGGTTTGGGGCTTCGA 57.412 45.000 0.00 0.00 0.00 3.71
1392 1408 1.828979 TTATGGTTTGGGGCTTCGAC 58.171 50.000 0.00 0.00 0.00 4.20
1393 1409 0.693622 TATGGTTTGGGGCTTCGACA 59.306 50.000 0.00 0.00 0.00 4.35
1394 1410 0.039618 ATGGTTTGGGGCTTCGACAT 59.960 50.000 0.00 0.00 0.00 3.06
1396 1412 0.966179 GGTTTGGGGCTTCGACATTT 59.034 50.000 0.00 0.00 0.00 2.32
1397 1413 2.164338 GGTTTGGGGCTTCGACATTTA 58.836 47.619 0.00 0.00 0.00 1.40
1399 1415 3.078837 GTTTGGGGCTTCGACATTTAGA 58.921 45.455 0.00 0.00 0.00 2.10
1400 1416 3.426787 TTGGGGCTTCGACATTTAGAA 57.573 42.857 0.00 0.00 0.00 2.10
1401 1417 2.985896 TGGGGCTTCGACATTTAGAAG 58.014 47.619 0.00 0.00 44.77 2.85
1403 1419 2.355818 GGGGCTTCGACATTTAGAAGGT 60.356 50.000 4.24 0.00 42.86 3.50
1529 1954 2.885644 CGTTCATCGCCGTGGAGG 60.886 66.667 0.00 0.00 44.97 4.30
1676 2101 2.490902 GGGACCAAGATGTTTGACCCTT 60.491 50.000 6.91 0.00 35.03 3.95
1706 2131 4.720902 TGCTGGCCACGTGGATGG 62.721 66.667 38.30 24.42 43.26 3.51
1862 2287 5.422214 AGGTGTTGGAACTACTAGGAATG 57.578 43.478 0.00 0.00 0.00 2.67
1866 2291 2.840511 TGGAACTACTAGGAATGCCCA 58.159 47.619 0.00 0.00 37.41 5.36
2123 2740 7.961326 AATATTGTTGAATTACCTTCCTGCT 57.039 32.000 0.00 0.00 32.49 4.24
2440 3060 7.962995 TTAATTATCCTTGGCACCATTACAA 57.037 32.000 0.00 0.00 0.00 2.41
2444 3064 3.300388 TCCTTGGCACCATTACAACAAA 58.700 40.909 0.00 0.00 0.00 2.83
2692 3312 4.080863 AGCGGAGTCTTAACAGGATCAAAT 60.081 41.667 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 3.637229 TGCCTTCGATTCTACTAAGGAGG 59.363 47.826 4.19 0.00 40.85 4.30
171 172 6.071278 TCCATGCATTCATTGTTGATCTTTGA 60.071 34.615 0.00 0.00 0.00 2.69
174 175 5.655090 TCTCCATGCATTCATTGTTGATCTT 59.345 36.000 0.00 0.00 0.00 2.40
285 286 7.831193 ACATCACCAAATCTTTGCTAGAATAGT 59.169 33.333 0.00 0.00 41.93 2.12
320 321 3.090952 TGCTTTTTCAACGACAATGGG 57.909 42.857 0.00 0.00 0.00 4.00
324 325 6.671879 GCATTTCTTTGCTTTTTCAACGACAA 60.672 34.615 0.00 0.00 39.57 3.18
546 551 2.030958 GACCCCGTCGACGCAAAAT 61.031 57.895 31.73 14.57 38.18 1.82
554 559 1.451567 CTCTAGCAGACCCCGTCGA 60.452 63.158 0.00 0.00 37.67 4.20
555 560 0.820074 ATCTCTAGCAGACCCCGTCG 60.820 60.000 0.00 0.00 37.67 5.12
556 561 0.671251 CATCTCTAGCAGACCCCGTC 59.329 60.000 0.00 0.00 32.26 4.79
557 562 1.395826 GCATCTCTAGCAGACCCCGT 61.396 60.000 0.00 0.00 32.26 5.28
580 594 8.068977 CGAGATGGAAGAAAAATGATGATCTTC 58.931 37.037 5.95 5.95 44.41 2.87
582 596 7.052873 ACGAGATGGAAGAAAAATGATGATCT 58.947 34.615 0.00 0.00 0.00 2.75
583 597 7.256756 ACGAGATGGAAGAAAAATGATGATC 57.743 36.000 0.00 0.00 0.00 2.92
584 598 7.415989 CCAACGAGATGGAAGAAAAATGATGAT 60.416 37.037 0.00 0.00 43.54 2.45
585 599 6.127925 CCAACGAGATGGAAGAAAAATGATGA 60.128 38.462 0.00 0.00 43.54 2.92
586 600 6.032094 CCAACGAGATGGAAGAAAAATGATG 58.968 40.000 0.00 0.00 43.54 3.07
587 601 5.711976 ACCAACGAGATGGAAGAAAAATGAT 59.288 36.000 12.38 0.00 43.54 2.45
588 602 5.048782 CACCAACGAGATGGAAGAAAAATGA 60.049 40.000 12.38 0.00 43.54 2.57
589 603 5.156355 CACCAACGAGATGGAAGAAAAATG 58.844 41.667 12.38 0.00 43.54 2.32
590 604 4.827284 ACACCAACGAGATGGAAGAAAAAT 59.173 37.500 12.38 0.00 43.54 1.82
591 605 4.204012 ACACCAACGAGATGGAAGAAAAA 58.796 39.130 12.38 0.00 43.54 1.94
592 606 3.815809 ACACCAACGAGATGGAAGAAAA 58.184 40.909 12.38 0.00 43.54 2.29
593 607 3.485463 ACACCAACGAGATGGAAGAAA 57.515 42.857 12.38 0.00 43.54 2.52
594 608 4.466370 AGATACACCAACGAGATGGAAGAA 59.534 41.667 12.38 0.00 43.54 2.52
595 609 4.023980 AGATACACCAACGAGATGGAAGA 58.976 43.478 12.38 0.00 43.54 2.87
596 610 4.115516 CAGATACACCAACGAGATGGAAG 58.884 47.826 12.38 7.60 43.54 3.46
597 611 3.513912 ACAGATACACCAACGAGATGGAA 59.486 43.478 12.38 0.55 43.54 3.53
598 612 3.096852 ACAGATACACCAACGAGATGGA 58.903 45.455 12.38 0.00 43.54 3.41
599 613 3.526931 ACAGATACACCAACGAGATGG 57.473 47.619 0.00 0.00 46.38 3.51
600 614 4.929211 TCAAACAGATACACCAACGAGATG 59.071 41.667 0.00 0.00 0.00 2.90
601 615 5.147330 TCAAACAGATACACCAACGAGAT 57.853 39.130 0.00 0.00 0.00 2.75
602 616 4.594123 TCAAACAGATACACCAACGAGA 57.406 40.909 0.00 0.00 0.00 4.04
603 617 4.377431 GCTTCAAACAGATACACCAACGAG 60.377 45.833 0.00 0.00 0.00 4.18
604 618 3.496884 GCTTCAAACAGATACACCAACGA 59.503 43.478 0.00 0.00 0.00 3.85
605 619 3.249799 TGCTTCAAACAGATACACCAACG 59.750 43.478 0.00 0.00 0.00 4.10
606 620 4.829064 TGCTTCAAACAGATACACCAAC 57.171 40.909 0.00 0.00 0.00 3.77
607 621 4.887071 ACTTGCTTCAAACAGATACACCAA 59.113 37.500 0.00 0.00 0.00 3.67
608 622 4.275689 CACTTGCTTCAAACAGATACACCA 59.724 41.667 0.00 0.00 0.00 4.17
609 623 4.515191 TCACTTGCTTCAAACAGATACACC 59.485 41.667 0.00 0.00 0.00 4.16
610 624 5.673337 TCACTTGCTTCAAACAGATACAC 57.327 39.130 0.00 0.00 0.00 2.90
611 625 6.245115 CATCACTTGCTTCAAACAGATACA 57.755 37.500 0.00 0.00 0.00 2.29
626 640 4.097437 AGTGCATTATTCAGGCATCACTTG 59.903 41.667 0.00 0.00 40.05 3.16
627 641 4.275810 AGTGCATTATTCAGGCATCACTT 58.724 39.130 0.00 0.00 40.05 3.16
628 642 3.881688 GAGTGCATTATTCAGGCATCACT 59.118 43.478 0.00 0.00 40.05 3.41
629 643 3.628942 TGAGTGCATTATTCAGGCATCAC 59.371 43.478 0.00 0.00 40.05 3.06
630 644 3.628942 GTGAGTGCATTATTCAGGCATCA 59.371 43.478 0.00 0.00 40.05 3.07
631 645 3.628942 TGTGAGTGCATTATTCAGGCATC 59.371 43.478 0.00 0.00 40.05 3.91
632 646 3.379372 GTGTGAGTGCATTATTCAGGCAT 59.621 43.478 0.00 0.00 40.05 4.40
633 647 2.749076 GTGTGAGTGCATTATTCAGGCA 59.251 45.455 0.00 0.00 34.70 4.75
634 648 2.223112 CGTGTGAGTGCATTATTCAGGC 60.223 50.000 0.00 0.00 0.00 4.85
635 649 3.062639 GTCGTGTGAGTGCATTATTCAGG 59.937 47.826 0.00 0.00 0.00 3.86
636 650 3.679502 TGTCGTGTGAGTGCATTATTCAG 59.320 43.478 0.00 0.00 0.00 3.02
637 651 3.431912 GTGTCGTGTGAGTGCATTATTCA 59.568 43.478 0.00 0.00 0.00 2.57
638 652 3.431912 TGTGTCGTGTGAGTGCATTATTC 59.568 43.478 0.00 0.00 0.00 1.75
639 653 3.398406 TGTGTCGTGTGAGTGCATTATT 58.602 40.909 0.00 0.00 0.00 1.40
640 654 3.038788 TGTGTCGTGTGAGTGCATTAT 57.961 42.857 0.00 0.00 0.00 1.28
641 655 2.517650 TGTGTCGTGTGAGTGCATTA 57.482 45.000 0.00 0.00 0.00 1.90
642 656 1.800586 GATGTGTCGTGTGAGTGCATT 59.199 47.619 0.00 0.00 0.00 3.56
643 657 1.001293 AGATGTGTCGTGTGAGTGCAT 59.999 47.619 0.00 0.00 0.00 3.96
644 658 0.389025 AGATGTGTCGTGTGAGTGCA 59.611 50.000 0.00 0.00 0.00 4.57
645 659 1.063806 GAGATGTGTCGTGTGAGTGC 58.936 55.000 0.00 0.00 0.00 4.40
646 660 2.323059 CAGAGATGTGTCGTGTGAGTG 58.677 52.381 0.00 0.00 0.00 3.51
647 661 1.336332 GCAGAGATGTGTCGTGTGAGT 60.336 52.381 0.00 0.00 0.00 3.41
648 662 1.336240 TGCAGAGATGTGTCGTGTGAG 60.336 52.381 0.00 0.00 0.00 3.51
649 663 0.673437 TGCAGAGATGTGTCGTGTGA 59.327 50.000 0.00 0.00 0.00 3.58
650 664 1.718396 ATGCAGAGATGTGTCGTGTG 58.282 50.000 0.00 0.00 0.00 3.82
651 665 3.592898 TTATGCAGAGATGTGTCGTGT 57.407 42.857 0.00 0.00 0.00 4.49
652 666 4.807834 AGATTTATGCAGAGATGTGTCGTG 59.192 41.667 0.00 0.00 0.00 4.35
653 667 5.016051 AGATTTATGCAGAGATGTGTCGT 57.984 39.130 0.00 0.00 0.00 4.34
654 668 4.447054 GGAGATTTATGCAGAGATGTGTCG 59.553 45.833 0.00 0.00 0.00 4.35
655 669 5.363101 TGGAGATTTATGCAGAGATGTGTC 58.637 41.667 0.00 0.00 0.00 3.67
656 670 5.363562 TGGAGATTTATGCAGAGATGTGT 57.636 39.130 0.00 0.00 0.00 3.72
657 671 5.277202 CGTTGGAGATTTATGCAGAGATGTG 60.277 44.000 0.00 0.00 0.00 3.21
658 672 4.813161 CGTTGGAGATTTATGCAGAGATGT 59.187 41.667 0.00 0.00 0.00 3.06
659 673 5.052481 TCGTTGGAGATTTATGCAGAGATG 58.948 41.667 0.00 0.00 0.00 2.90
660 674 5.282055 TCGTTGGAGATTTATGCAGAGAT 57.718 39.130 0.00 0.00 0.00 2.75
661 675 4.736126 TCGTTGGAGATTTATGCAGAGA 57.264 40.909 0.00 0.00 0.00 3.10
662 676 7.664082 AATATCGTTGGAGATTTATGCAGAG 57.336 36.000 0.00 0.00 30.12 3.35
663 677 8.988934 GTAAATATCGTTGGAGATTTATGCAGA 58.011 33.333 7.04 0.00 43.97 4.26
664 678 8.230486 GGTAAATATCGTTGGAGATTTATGCAG 58.770 37.037 7.04 0.00 43.97 4.41
665 679 7.717436 TGGTAAATATCGTTGGAGATTTATGCA 59.283 33.333 7.04 0.00 43.97 3.96
666 680 8.015658 GTGGTAAATATCGTTGGAGATTTATGC 58.984 37.037 7.04 0.00 43.97 3.14
667 681 9.273016 AGTGGTAAATATCGTTGGAGATTTATG 57.727 33.333 7.04 0.00 43.97 1.90
668 682 9.847224 AAGTGGTAAATATCGTTGGAGATTTAT 57.153 29.630 7.04 0.00 43.97 1.40
669 683 9.321562 GAAGTGGTAAATATCGTTGGAGATTTA 57.678 33.333 1.09 1.09 41.08 1.40
670 684 7.827236 TGAAGTGGTAAATATCGTTGGAGATTT 59.173 33.333 2.76 2.76 44.09 2.17
671 685 7.335627 TGAAGTGGTAAATATCGTTGGAGATT 58.664 34.615 0.00 0.00 35.69 2.40
672 686 6.884832 TGAAGTGGTAAATATCGTTGGAGAT 58.115 36.000 0.00 0.00 34.79 2.75
673 687 6.288941 TGAAGTGGTAAATATCGTTGGAGA 57.711 37.500 0.00 0.00 0.00 3.71
674 688 6.978343 TTGAAGTGGTAAATATCGTTGGAG 57.022 37.500 0.00 0.00 0.00 3.86
675 689 7.747155 TTTTGAAGTGGTAAATATCGTTGGA 57.253 32.000 0.00 0.00 0.00 3.53
676 690 8.980143 ATTTTTGAAGTGGTAAATATCGTTGG 57.020 30.769 0.00 0.00 0.00 3.77
698 712 9.185680 GGGCGGATATATAAGGTTGATTTATTT 57.814 33.333 0.00 0.00 0.00 1.40
699 713 8.333235 TGGGCGGATATATAAGGTTGATTTATT 58.667 33.333 0.00 0.00 0.00 1.40
700 714 7.867921 TGGGCGGATATATAAGGTTGATTTAT 58.132 34.615 0.00 0.00 0.00 1.40
701 715 7.260387 TGGGCGGATATATAAGGTTGATTTA 57.740 36.000 0.00 0.00 0.00 1.40
702 716 6.134535 TGGGCGGATATATAAGGTTGATTT 57.865 37.500 0.00 0.00 0.00 2.17
703 717 5.772393 TGGGCGGATATATAAGGTTGATT 57.228 39.130 0.00 0.00 0.00 2.57
704 718 5.013704 TGTTGGGCGGATATATAAGGTTGAT 59.986 40.000 0.00 0.00 0.00 2.57
705 719 4.348461 TGTTGGGCGGATATATAAGGTTGA 59.652 41.667 0.00 0.00 0.00 3.18
706 720 4.647611 TGTTGGGCGGATATATAAGGTTG 58.352 43.478 0.00 0.00 0.00 3.77
707 721 4.986054 TGTTGGGCGGATATATAAGGTT 57.014 40.909 0.00 0.00 0.00 3.50
708 722 4.534500 TGATGTTGGGCGGATATATAAGGT 59.466 41.667 0.00 0.00 0.00 3.50
709 723 5.097742 TGATGTTGGGCGGATATATAAGG 57.902 43.478 0.00 0.00 0.00 2.69
710 724 6.402118 CGTTTGATGTTGGGCGGATATATAAG 60.402 42.308 0.00 0.00 0.00 1.73
711 725 5.410132 CGTTTGATGTTGGGCGGATATATAA 59.590 40.000 0.00 0.00 0.00 0.98
712 726 4.932799 CGTTTGATGTTGGGCGGATATATA 59.067 41.667 0.00 0.00 0.00 0.86
713 727 3.751175 CGTTTGATGTTGGGCGGATATAT 59.249 43.478 0.00 0.00 0.00 0.86
714 728 3.135225 CGTTTGATGTTGGGCGGATATA 58.865 45.455 0.00 0.00 0.00 0.86
715 729 1.946768 CGTTTGATGTTGGGCGGATAT 59.053 47.619 0.00 0.00 0.00 1.63
716 730 1.066071 TCGTTTGATGTTGGGCGGATA 60.066 47.619 0.00 0.00 0.00 2.59
717 731 0.322098 TCGTTTGATGTTGGGCGGAT 60.322 50.000 0.00 0.00 0.00 4.18
718 732 1.071642 TCGTTTGATGTTGGGCGGA 59.928 52.632 0.00 0.00 0.00 5.54
719 733 1.209127 GTCGTTTGATGTTGGGCGG 59.791 57.895 0.00 0.00 0.00 6.13
720 734 0.385473 GTGTCGTTTGATGTTGGGCG 60.385 55.000 0.00 0.00 0.00 6.13
721 735 0.951558 AGTGTCGTTTGATGTTGGGC 59.048 50.000 0.00 0.00 0.00 5.36
722 736 5.371115 AAATAGTGTCGTTTGATGTTGGG 57.629 39.130 0.00 0.00 0.00 4.12
723 737 6.899771 CGATAAATAGTGTCGTTTGATGTTGG 59.100 38.462 0.00 0.00 0.00 3.77
724 738 7.671827 TCGATAAATAGTGTCGTTTGATGTTG 58.328 34.615 0.00 0.00 36.77 3.33
725 739 7.821595 TCGATAAATAGTGTCGTTTGATGTT 57.178 32.000 0.00 0.00 36.77 2.71
726 740 7.821595 TTCGATAAATAGTGTCGTTTGATGT 57.178 32.000 0.00 0.00 36.77 3.06
727 741 8.380644 AGTTTCGATAAATAGTGTCGTTTGATG 58.619 33.333 0.00 0.00 36.77 3.07
728 742 8.380644 CAGTTTCGATAAATAGTGTCGTTTGAT 58.619 33.333 0.00 0.00 36.77 2.57
729 743 7.620600 GCAGTTTCGATAAATAGTGTCGTTTGA 60.621 37.037 0.00 0.00 36.77 2.69
730 744 6.461698 GCAGTTTCGATAAATAGTGTCGTTTG 59.538 38.462 0.00 0.00 36.77 2.93
731 745 6.367969 AGCAGTTTCGATAAATAGTGTCGTTT 59.632 34.615 0.00 0.00 36.77 3.60
732 746 5.867716 AGCAGTTTCGATAAATAGTGTCGTT 59.132 36.000 0.00 0.00 36.77 3.85
733 747 5.408356 AGCAGTTTCGATAAATAGTGTCGT 58.592 37.500 0.00 0.00 36.77 4.34
734 748 5.744345 AGAGCAGTTTCGATAAATAGTGTCG 59.256 40.000 0.00 0.00 36.75 4.35
735 749 6.531948 ACAGAGCAGTTTCGATAAATAGTGTC 59.468 38.462 0.00 0.00 0.00 3.67
736 750 6.398918 ACAGAGCAGTTTCGATAAATAGTGT 58.601 36.000 0.00 0.00 0.00 3.55
737 751 6.893958 ACAGAGCAGTTTCGATAAATAGTG 57.106 37.500 0.00 0.00 0.00 2.74
738 752 7.907214 AAACAGAGCAGTTTCGATAAATAGT 57.093 32.000 0.00 0.00 37.11 2.12
749 763 0.663153 GCCACGAAACAGAGCAGTTT 59.337 50.000 0.00 2.19 43.90 2.66
750 764 1.166531 GGCCACGAAACAGAGCAGTT 61.167 55.000 0.00 0.00 0.00 3.16
751 765 1.598130 GGCCACGAAACAGAGCAGT 60.598 57.895 0.00 0.00 0.00 4.40
752 766 2.671177 CGGCCACGAAACAGAGCAG 61.671 63.158 2.24 0.00 44.60 4.24
753 767 2.664851 CGGCCACGAAACAGAGCA 60.665 61.111 2.24 0.00 44.60 4.26
763 777 2.972505 GGGTGCATATCGGCCACG 60.973 66.667 2.24 0.00 42.74 4.94
764 778 2.972505 CGGGTGCATATCGGCCAC 60.973 66.667 2.24 0.00 0.00 5.01
765 779 3.157949 TCGGGTGCATATCGGCCA 61.158 61.111 2.24 0.00 0.00 5.36
766 780 2.665185 GTCGGGTGCATATCGGCC 60.665 66.667 0.00 0.00 0.00 6.13
767 781 2.108157 TGTCGGGTGCATATCGGC 59.892 61.111 0.00 0.00 0.00 5.54
768 782 0.179084 AAGTGTCGGGTGCATATCGG 60.179 55.000 0.00 0.00 0.00 4.18
769 783 0.930310 CAAGTGTCGGGTGCATATCG 59.070 55.000 0.00 0.00 0.00 2.92
770 784 2.309528 TCAAGTGTCGGGTGCATATC 57.690 50.000 0.00 0.00 0.00 1.63
771 785 2.779755 TTCAAGTGTCGGGTGCATAT 57.220 45.000 0.00 0.00 0.00 1.78
772 786 2.627945 GATTCAAGTGTCGGGTGCATA 58.372 47.619 0.00 0.00 0.00 3.14
773 787 1.453155 GATTCAAGTGTCGGGTGCAT 58.547 50.000 0.00 0.00 0.00 3.96
774 788 0.605319 GGATTCAAGTGTCGGGTGCA 60.605 55.000 0.00 0.00 0.00 4.57
775 789 0.605319 TGGATTCAAGTGTCGGGTGC 60.605 55.000 0.00 0.00 0.00 5.01
776 790 1.442769 CTGGATTCAAGTGTCGGGTG 58.557 55.000 0.00 0.00 0.00 4.61
777 791 0.321653 GCTGGATTCAAGTGTCGGGT 60.322 55.000 0.00 0.00 0.00 5.28
778 792 0.036010 AGCTGGATTCAAGTGTCGGG 60.036 55.000 0.00 0.00 0.00 5.14
779 793 1.081892 CAGCTGGATTCAAGTGTCGG 58.918 55.000 5.57 0.00 0.00 4.79
780 794 1.081892 CCAGCTGGATTCAAGTGTCG 58.918 55.000 29.88 0.00 37.39 4.35
781 795 1.271597 ACCCAGCTGGATTCAAGTGTC 60.272 52.381 34.91 0.00 37.39 3.67
782 796 0.773644 ACCCAGCTGGATTCAAGTGT 59.226 50.000 34.91 17.40 37.39 3.55
783 797 2.237143 TCTACCCAGCTGGATTCAAGTG 59.763 50.000 34.91 16.70 37.39 3.16
784 798 2.551270 TCTACCCAGCTGGATTCAAGT 58.449 47.619 34.91 22.97 37.39 3.16
785 799 3.054802 ACTTCTACCCAGCTGGATTCAAG 60.055 47.826 34.91 27.35 37.39 3.02
786 800 2.912956 ACTTCTACCCAGCTGGATTCAA 59.087 45.455 34.91 18.67 37.39 2.69
787 801 2.551270 ACTTCTACCCAGCTGGATTCA 58.449 47.619 34.91 14.17 37.39 2.57
788 802 4.965200 ATACTTCTACCCAGCTGGATTC 57.035 45.455 34.91 0.00 37.39 2.52
789 803 5.468658 AGTATACTTCTACCCAGCTGGATT 58.531 41.667 34.91 21.95 37.39 3.01
790 804 5.081032 GAGTATACTTCTACCCAGCTGGAT 58.919 45.833 34.91 21.96 37.39 3.41
791 805 4.471548 GAGTATACTTCTACCCAGCTGGA 58.528 47.826 34.91 14.56 37.39 3.86
792 806 3.574826 GGAGTATACTTCTACCCAGCTGG 59.425 52.174 26.87 26.87 41.37 4.85
793 807 4.038162 GTGGAGTATACTTCTACCCAGCTG 59.962 50.000 12.50 6.78 0.00 4.24
794 808 4.216708 GTGGAGTATACTTCTACCCAGCT 58.783 47.826 12.50 0.00 0.00 4.24
795 809 3.321396 GGTGGAGTATACTTCTACCCAGC 59.679 52.174 18.51 18.51 35.40 4.85
796 810 4.543689 TGGTGGAGTATACTTCTACCCAG 58.456 47.826 22.86 0.00 0.00 4.45
797 811 4.613265 TGGTGGAGTATACTTCTACCCA 57.387 45.455 22.86 17.79 0.00 4.51
798 812 7.234988 ACATTATGGTGGAGTATACTTCTACCC 59.765 40.741 22.86 16.13 0.00 3.69
799 813 8.088981 CACATTATGGTGGAGTATACTTCTACC 58.911 40.741 20.83 20.83 35.13 3.18
800 814 7.599245 GCACATTATGGTGGAGTATACTTCTAC 59.401 40.741 12.50 10.45 39.19 2.59
801 815 7.523216 CGCACATTATGGTGGAGTATACTTCTA 60.523 40.741 12.50 3.07 39.19 2.10
802 816 6.525629 GCACATTATGGTGGAGTATACTTCT 58.474 40.000 12.50 0.00 39.19 2.85
803 817 5.405571 CGCACATTATGGTGGAGTATACTTC 59.594 44.000 6.88 5.39 39.19 3.01
804 818 5.297547 CGCACATTATGGTGGAGTATACTT 58.702 41.667 6.88 0.00 39.19 2.24
805 819 4.799586 GCGCACATTATGGTGGAGTATACT 60.800 45.833 4.68 4.68 39.19 2.12
806 820 3.432252 GCGCACATTATGGTGGAGTATAC 59.568 47.826 0.30 0.00 39.19 1.47
807 821 3.323691 AGCGCACATTATGGTGGAGTATA 59.676 43.478 11.47 0.00 39.19 1.47
808 822 2.104792 AGCGCACATTATGGTGGAGTAT 59.895 45.455 11.47 0.00 39.19 2.12
809 823 1.484653 AGCGCACATTATGGTGGAGTA 59.515 47.619 11.47 0.00 39.19 2.59
810 824 0.253044 AGCGCACATTATGGTGGAGT 59.747 50.000 11.47 0.00 39.19 3.85
811 825 0.940126 GAGCGCACATTATGGTGGAG 59.060 55.000 11.47 0.00 39.19 3.86
812 826 0.541392 AGAGCGCACATTATGGTGGA 59.459 50.000 11.47 0.00 39.19 4.02
813 827 0.659427 CAGAGCGCACATTATGGTGG 59.341 55.000 11.47 0.00 39.19 4.61
814 828 1.328680 GTCAGAGCGCACATTATGGTG 59.671 52.381 11.47 0.00 41.72 4.17
815 829 1.656652 GTCAGAGCGCACATTATGGT 58.343 50.000 11.47 0.00 0.00 3.55
816 830 0.578683 CGTCAGAGCGCACATTATGG 59.421 55.000 11.47 0.00 0.00 2.74
817 831 1.005662 CACGTCAGAGCGCACATTATG 60.006 52.381 11.47 0.00 34.88 1.90
818 832 1.280982 CACGTCAGAGCGCACATTAT 58.719 50.000 11.47 0.00 34.88 1.28
819 833 1.351430 GCACGTCAGAGCGCACATTA 61.351 55.000 11.47 0.00 34.88 1.90
820 834 2.671177 GCACGTCAGAGCGCACATT 61.671 57.895 11.47 0.00 34.88 2.71
821 835 3.114616 GCACGTCAGAGCGCACAT 61.115 61.111 11.47 0.00 34.88 3.21
822 836 4.583866 TGCACGTCAGAGCGCACA 62.584 61.111 11.47 0.00 36.74 4.57
823 837 3.287121 CTTGCACGTCAGAGCGCAC 62.287 63.158 11.47 2.25 36.74 5.34
824 838 2.969677 TTCTTGCACGTCAGAGCGCA 62.970 55.000 11.47 0.00 36.74 6.09
825 839 1.630244 ATTCTTGCACGTCAGAGCGC 61.630 55.000 0.00 0.00 36.74 5.92
826 840 1.585668 CTATTCTTGCACGTCAGAGCG 59.414 52.381 0.00 0.00 36.74 5.03
827 841 2.881074 TCTATTCTTGCACGTCAGAGC 58.119 47.619 0.00 0.00 34.46 4.09
828 842 7.525688 TTTATTCTATTCTTGCACGTCAGAG 57.474 36.000 0.00 0.00 0.00 3.35
829 843 8.492673 AATTTATTCTATTCTTGCACGTCAGA 57.507 30.769 0.00 0.00 0.00 3.27
830 844 9.638300 GTAATTTATTCTATTCTTGCACGTCAG 57.362 33.333 0.00 0.00 0.00 3.51
831 845 9.157104 TGTAATTTATTCTATTCTTGCACGTCA 57.843 29.630 0.00 0.00 0.00 4.35
834 848 9.306280 CGATGTAATTTATTCTATTCTTGCACG 57.694 33.333 0.00 0.00 0.00 5.34
860 874 5.798934 ACGAGTCAAACACGATGTACTAATC 59.201 40.000 4.01 0.00 35.77 1.75
861 875 5.706916 ACGAGTCAAACACGATGTACTAAT 58.293 37.500 4.01 0.00 35.77 1.73
862 876 5.112220 ACGAGTCAAACACGATGTACTAA 57.888 39.130 4.01 0.00 35.77 2.24
863 877 4.667415 CGACGAGTCAAACACGATGTACTA 60.667 45.833 4.01 0.00 35.77 1.82
885 899 1.680860 GGGGTTATGTTGGGGAAGTCG 60.681 57.143 0.00 0.00 0.00 4.18
895 909 2.375174 TCAGAGCAAGTGGGGTTATGTT 59.625 45.455 0.00 0.00 0.00 2.71
990 1006 0.037303 CTCCTGCCATCACCTGTGTT 59.963 55.000 0.00 0.00 0.00 3.32
1005 1021 0.892063 GCTTCAGTTCGTCTCCTCCT 59.108 55.000 0.00 0.00 0.00 3.69
1065 1081 1.676967 CTTGAGGGTGAGGGCAAGC 60.677 63.158 0.00 0.00 32.41 4.01
1139 1155 3.368571 GCACAGGGTTGGAGCTGC 61.369 66.667 0.00 0.00 0.00 5.25
1170 1186 1.019278 CGCCGTTGTGGATAAGCACT 61.019 55.000 0.00 0.00 42.00 4.40
1176 1192 2.185867 GGAGCGCCGTTGTGGATA 59.814 61.111 2.29 0.00 42.00 2.59
1208 1224 3.492383 GTCGATGTACTGCAGGATGATTG 59.508 47.826 19.93 9.96 39.69 2.67
1209 1225 3.722147 GTCGATGTACTGCAGGATGATT 58.278 45.455 19.93 0.00 39.69 2.57
1337 1353 4.336993 ACCACGTAGCTAAGATGAGAAGAG 59.663 45.833 13.91 0.00 0.00 2.85
1342 1358 4.451435 TCGATACCACGTAGCTAAGATGAG 59.549 45.833 13.91 1.76 34.70 2.90
1345 1361 4.639334 TCTCGATACCACGTAGCTAAGAT 58.361 43.478 13.91 0.00 34.70 2.40
1347 1363 4.451435 TGATCTCGATACCACGTAGCTAAG 59.549 45.833 5.03 5.03 34.70 2.18
1354 1370 5.926542 CCATAAATTGATCTCGATACCACGT 59.073 40.000 0.00 0.00 34.70 4.49
1355 1371 5.926542 ACCATAAATTGATCTCGATACCACG 59.073 40.000 0.00 0.00 0.00 4.94
1356 1372 7.730364 AACCATAAATTGATCTCGATACCAC 57.270 36.000 0.00 0.00 0.00 4.16
1357 1373 7.228507 CCAAACCATAAATTGATCTCGATACCA 59.771 37.037 0.00 0.00 0.00 3.25
1358 1374 7.308589 CCCAAACCATAAATTGATCTCGATACC 60.309 40.741 0.00 0.00 0.00 2.73
1359 1375 7.308589 CCCCAAACCATAAATTGATCTCGATAC 60.309 40.741 0.00 0.00 0.00 2.24
1360 1376 6.714810 CCCCAAACCATAAATTGATCTCGATA 59.285 38.462 0.00 0.00 0.00 2.92
1361 1377 5.536161 CCCCAAACCATAAATTGATCTCGAT 59.464 40.000 0.00 0.00 0.00 3.59
1362 1378 4.887071 CCCCAAACCATAAATTGATCTCGA 59.113 41.667 0.00 0.00 0.00 4.04
1363 1379 4.499696 GCCCCAAACCATAAATTGATCTCG 60.500 45.833 0.00 0.00 0.00 4.04
1364 1380 4.651045 AGCCCCAAACCATAAATTGATCTC 59.349 41.667 0.00 0.00 0.00 2.75
1366 1382 5.357742 AAGCCCCAAACCATAAATTGATC 57.642 39.130 0.00 0.00 0.00 2.92
1368 1384 3.194542 CGAAGCCCCAAACCATAAATTGA 59.805 43.478 0.00 0.00 0.00 2.57
1369 1385 3.194542 TCGAAGCCCCAAACCATAAATTG 59.805 43.478 0.00 0.00 0.00 2.32
1370 1386 3.194755 GTCGAAGCCCCAAACCATAAATT 59.805 43.478 0.00 0.00 0.00 1.82
1371 1387 2.758423 GTCGAAGCCCCAAACCATAAAT 59.242 45.455 0.00 0.00 0.00 1.40
1372 1388 2.164338 GTCGAAGCCCCAAACCATAAA 58.836 47.619 0.00 0.00 0.00 1.40
1373 1389 1.074084 TGTCGAAGCCCCAAACCATAA 59.926 47.619 0.00 0.00 0.00 1.90
1374 1390 0.693622 TGTCGAAGCCCCAAACCATA 59.306 50.000 0.00 0.00 0.00 2.74
1375 1391 0.039618 ATGTCGAAGCCCCAAACCAT 59.960 50.000 0.00 0.00 0.00 3.55
1379 1395 3.426787 TCTAAATGTCGAAGCCCCAAA 57.573 42.857 0.00 0.00 0.00 3.28
1380 1396 3.343617 CTTCTAAATGTCGAAGCCCCAA 58.656 45.455 0.00 0.00 31.34 4.12
1381 1397 2.355716 CCTTCTAAATGTCGAAGCCCCA 60.356 50.000 0.00 0.00 36.25 4.96
1382 1398 2.289565 CCTTCTAAATGTCGAAGCCCC 58.710 52.381 0.00 0.00 36.25 5.80
1385 1401 5.803020 AATCACCTTCTAAATGTCGAAGC 57.197 39.130 0.00 0.00 36.25 3.86
1387 1403 8.717821 CAGTAAAATCACCTTCTAAATGTCGAA 58.282 33.333 0.00 0.00 0.00 3.71
1388 1404 8.092068 TCAGTAAAATCACCTTCTAAATGTCGA 58.908 33.333 0.00 0.00 0.00 4.20
1389 1405 8.251750 TCAGTAAAATCACCTTCTAAATGTCG 57.748 34.615 0.00 0.00 0.00 4.35
1391 1407 9.739276 TGATCAGTAAAATCACCTTCTAAATGT 57.261 29.630 0.00 0.00 0.00 2.71
1396 1412 9.958180 TTCAATGATCAGTAAAATCACCTTCTA 57.042 29.630 0.09 0.00 36.04 2.10
1397 1413 8.868522 TTCAATGATCAGTAAAATCACCTTCT 57.131 30.769 0.09 0.00 36.04 2.85
1399 1415 8.517878 CACTTCAATGATCAGTAAAATCACCTT 58.482 33.333 0.09 0.00 36.04 3.50
1400 1416 7.884877 TCACTTCAATGATCAGTAAAATCACCT 59.115 33.333 0.09 0.00 36.04 4.00
1401 1417 8.044060 TCACTTCAATGATCAGTAAAATCACC 57.956 34.615 0.09 0.00 36.04 4.02
1403 1419 8.186163 GCATCACTTCAATGATCAGTAAAATCA 58.814 33.333 0.09 0.00 37.20 2.57
1420 1841 0.315382 GCATACACGCGCATCACTTC 60.315 55.000 5.73 0.00 0.00 3.01
1529 1954 4.120755 CAGGGCTCCTTCCAGGGC 62.121 72.222 0.00 0.00 35.59 5.19
1556 1981 3.443925 GAAGCCCTTGCCCTTCGC 61.444 66.667 0.00 0.00 38.69 4.70
1558 1983 1.308783 CGAAGAAGCCCTTGCCCTTC 61.309 60.000 0.00 0.00 40.97 3.46
1676 2101 1.553690 GCCAGCAGTGGGGTCTTAGA 61.554 60.000 0.00 0.00 45.17 2.10
1697 2122 2.125512 GAAGCGCTCCATCCACGT 60.126 61.111 12.06 0.00 0.00 4.49
1756 2181 2.611518 GTCTTGAACTCGACCATCCTG 58.388 52.381 0.00 0.00 0.00 3.86
1862 2287 1.134340 TCACATAACGGGTACATGGGC 60.134 52.381 0.00 0.00 0.00 5.36
1866 2291 5.367945 AAATCCTCACATAACGGGTACAT 57.632 39.130 0.00 0.00 0.00 2.29
1911 2336 8.284945 ACATTAGAACAGTACGGTGTAGATTA 57.715 34.615 0.00 0.00 0.00 1.75
2114 2731 3.731089 TGAAAATTTGCAAGCAGGAAGG 58.269 40.909 0.00 0.00 0.00 3.46
2123 2740 6.424509 GGACAACTCATCATGAAAATTTGCAA 59.575 34.615 2.14 0.00 0.00 4.08
2236 2853 6.128391 CGACATTTATTTTGAGACGGAGGAAA 60.128 38.462 0.00 0.00 0.00 3.13
2422 3042 3.168035 TGTTGTAATGGTGCCAAGGAT 57.832 42.857 0.00 0.00 0.00 3.24
2440 3060 8.641499 ATTGTTGTTTGTATGTCGATTTTTGT 57.359 26.923 0.00 0.00 0.00 2.83
2519 3139 3.947834 GAGACCAAGTAAACATCATGGGG 59.052 47.826 0.00 0.00 35.44 4.96
2572 3192 4.024048 GTCGAATTTGCCAAGAAGAGACAA 60.024 41.667 0.00 0.00 0.00 3.18
2640 3260 0.744414 GTGGATGGAGCGCTTTAGCA 60.744 55.000 13.26 0.00 42.21 3.49
2692 3312 3.104512 AGTGATGTCCGGAACCAAGATA 58.895 45.455 5.23 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.