Multiple sequence alignment - TraesCS1D01G189500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G189500 chr1D 100.000 4092 0 0 1 4092 261882515 261878424 0.000000e+00 7557.0
1 TraesCS1D01G189500 chr1D 95.697 674 27 2 3390 4062 298680524 298679852 0.000000e+00 1083.0
2 TraesCS1D01G189500 chr1D 82.278 79 14 0 1097 1175 457078273 457078195 7.340000e-08 69.4
3 TraesCS1D01G189500 chr1B 94.061 2071 85 17 1201 3238 349839350 349841415 0.000000e+00 3109.0
4 TraesCS1D01G189500 chr1B 89.143 175 11 4 3223 3393 349841434 349841604 1.150000e-50 211.0
5 TraesCS1D01G189500 chr1A 95.347 1483 53 9 1190 2659 337985475 337986954 0.000000e+00 2342.0
6 TraesCS1D01G189500 chr1A 95.111 675 28 5 3390 4062 569272729 569273400 0.000000e+00 1059.0
7 TraesCS1D01G189500 chr1A 85.896 709 69 14 509 1198 337982645 337983341 0.000000e+00 726.0
8 TraesCS1D01G189500 chr1A 87.308 520 47 9 1 509 558499886 558500397 9.860000e-161 577.0
9 TraesCS1D01G189500 chr1A 89.218 371 21 6 3021 3378 337987517 337987881 2.900000e-121 446.0
10 TraesCS1D01G189500 chr1A 93.500 200 8 1 2792 2991 337987256 337987450 4.000000e-75 292.0
11 TraesCS1D01G189500 chr1A 79.121 91 10 4 1089 1176 562032969 562032885 2.000000e-03 54.7
12 TraesCS1D01G189500 chr5D 97.177 673 18 1 3391 4062 356329312 356328640 0.000000e+00 1136.0
13 TraesCS1D01G189500 chr5D 84.314 102 12 3 129 230 410081272 410081175 3.370000e-16 97.1
14 TraesCS1D01G189500 chr5D 95.238 42 2 0 934 975 433514040 433513999 2.640000e-07 67.6
15 TraesCS1D01G189500 chr2D 97.015 670 17 3 3394 4062 131420406 131419739 0.000000e+00 1123.0
16 TraesCS1D01G189500 chr2D 95.912 685 23 5 3387 4069 556197543 556198224 0.000000e+00 1105.0
17 TraesCS1D01G189500 chr2D 94.444 54 3 0 898 951 612958898 612958845 2.620000e-12 84.2
18 TraesCS1D01G189500 chr2D 85.135 74 11 0 898 971 633848868 633848941 4.390000e-10 76.8
19 TraesCS1D01G189500 chr3A 81.844 1410 154 66 1279 2647 588658152 588659500 0.000000e+00 1092.0
20 TraesCS1D01G189500 chr3A 86.921 367 35 4 1980 2343 588725639 588725995 2.290000e-107 399.0
21 TraesCS1D01G189500 chr3A 88.926 298 24 5 1593 1887 588725292 588725583 3.890000e-95 359.0
22 TraesCS1D01G189500 chr3A 92.245 245 15 2 1257 1497 588724905 588725149 1.090000e-90 344.0
23 TraesCS1D01G189500 chr3A 90.058 171 17 0 2803 2973 588728216 588728386 5.320000e-54 222.0
24 TraesCS1D01G189500 chr3A 87.912 182 22 0 2803 2984 588659497 588659678 8.910000e-52 215.0
25 TraesCS1D01G189500 chr3D 81.601 1424 164 59 1263 2647 446854647 446856011 0.000000e+00 1088.0
26 TraesCS1D01G189500 chr3D 84.422 597 54 21 1279 1875 446910628 446911185 5.980000e-153 551.0
27 TraesCS1D01G189500 chr3D 87.363 364 34 8 1983 2343 446911260 446911614 1.370000e-109 407.0
28 TraesCS1D01G189500 chr3D 87.907 215 25 1 2433 2647 446912631 446912844 6.790000e-63 252.0
29 TraesCS1D01G189500 chr3D 91.228 171 15 0 2803 2973 446856008 446856178 2.460000e-57 233.0
30 TraesCS1D01G189500 chr3D 88.889 180 20 0 2803 2982 446912841 446913020 5.320000e-54 222.0
31 TraesCS1D01G189500 chr3D 97.826 46 1 0 606 651 574516595 574516550 3.390000e-11 80.5
32 TraesCS1D01G189500 chr3D 94.118 51 3 0 606 656 441134530 441134480 1.220000e-10 78.7
33 TraesCS1D01G189500 chr3B 95.380 671 30 1 3394 4063 620002954 620003624 0.000000e+00 1066.0
34 TraesCS1D01G189500 chr3B 81.818 1078 125 43 1593 2647 586341721 586342750 0.000000e+00 839.0
35 TraesCS1D01G189500 chr3B 84.154 650 67 24 1250 1887 586422359 586422984 7.570000e-167 597.0
36 TraesCS1D01G189500 chr3B 85.635 362 44 7 1983 2343 586423038 586423392 1.390000e-99 374.0
37 TraesCS1D01G189500 chr3B 91.250 240 16 2 1263 1497 586341402 586341641 5.100000e-84 322.0
38 TraesCS1D01G189500 chr3B 92.982 171 12 0 2803 2973 586342747 586342917 2.440000e-62 250.0
39 TraesCS1D01G189500 chr3B 90.556 180 17 0 2803 2982 586426773 586426952 5.290000e-59 239.0
40 TraesCS1D01G189500 chr3B 92.727 55 4 0 603 657 710591101 710591155 3.390000e-11 80.5
41 TraesCS1D01G189500 chr7B 95.373 670 30 1 3394 4062 465126822 465126153 0.000000e+00 1064.0
42 TraesCS1D01G189500 chr7B 86.981 530 47 5 1 509 559948198 559947670 9.860000e-161 577.0
43 TraesCS1D01G189500 chr2B 94.622 688 34 3 3384 4069 72505012 72504326 0.000000e+00 1062.0
44 TraesCS1D01G189500 chr2B 85.714 77 11 0 898 974 776813163 776813239 9.430000e-12 82.4
45 TraesCS1D01G189500 chr2B 97.619 42 1 0 931 972 600747548 600747589 5.670000e-09 73.1
46 TraesCS1D01G189500 chr6D 95.224 670 31 1 3394 4062 366257717 366257048 0.000000e+00 1059.0
47 TraesCS1D01G189500 chr6D 92.157 357 24 2 1 357 413015992 413016344 6.110000e-138 501.0
48 TraesCS1D01G189500 chr6D 83.427 531 43 13 1 509 457628746 457628239 6.240000e-123 451.0
49 TraesCS1D01G189500 chr6D 84.071 113 17 1 403 514 413016435 413016547 1.560000e-19 108.0
50 TraesCS1D01G189500 chr7A 93.346 511 30 4 1 509 8846907 8847415 0.000000e+00 752.0
51 TraesCS1D01G189500 chr7A 91.413 361 29 2 1 360 85598276 85597917 1.020000e-135 494.0
52 TraesCS1D01G189500 chr2A 93.529 510 26 3 1 509 753474010 753474513 0.000000e+00 752.0
53 TraesCS1D01G189500 chr2A 92.857 42 3 0 931 972 654914972 654915013 1.230000e-05 62.1
54 TraesCS1D01G189500 chr7D 92.282 298 15 3 1 294 19662425 19662132 2.280000e-112 416.0
55 TraesCS1D01G189500 chr7D 93.567 171 10 1 345 514 19660725 19660555 1.890000e-63 254.0
56 TraesCS1D01G189500 chr7D 94.444 54 3 0 1 54 569417207 569417260 2.620000e-12 84.2
57 TraesCS1D01G189500 chr7D 95.918 49 2 0 603 651 163351839 163351887 3.390000e-11 80.5
58 TraesCS1D01G189500 chr6A 97.872 47 1 0 603 649 609843796 609843842 9.430000e-12 82.4
59 TraesCS1D01G189500 chr4B 97.872 47 1 0 603 649 23660830 23660784 9.430000e-12 82.4
60 TraesCS1D01G189500 chr4A 97.872 47 1 0 603 649 665791169 665791123 9.430000e-12 82.4
61 TraesCS1D01G189500 chr6B 90.000 60 3 3 611 667 669011448 669011507 1.580000e-09 75.0
62 TraesCS1D01G189500 chr6B 80.208 96 18 1 1089 1184 152088205 152088111 2.040000e-08 71.3
63 TraesCS1D01G189500 chr5A 87.500 64 5 2 606 669 605589132 605589072 2.040000e-08 71.3
64 TraesCS1D01G189500 chr5B 95.238 42 2 0 934 975 524361904 524361863 2.640000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G189500 chr1D 261878424 261882515 4091 True 7557.000000 7557 100.000000 1 4092 1 chr1D.!!$R1 4091
1 TraesCS1D01G189500 chr1D 298679852 298680524 672 True 1083.000000 1083 95.697000 3390 4062 1 chr1D.!!$R2 672
2 TraesCS1D01G189500 chr1B 349839350 349841604 2254 False 1660.000000 3109 91.602000 1201 3393 2 chr1B.!!$F1 2192
3 TraesCS1D01G189500 chr1A 569272729 569273400 671 False 1059.000000 1059 95.111000 3390 4062 1 chr1A.!!$F2 672
4 TraesCS1D01G189500 chr1A 337982645 337987881 5236 False 951.500000 2342 90.990250 509 3378 4 chr1A.!!$F3 2869
5 TraesCS1D01G189500 chr1A 558499886 558500397 511 False 577.000000 577 87.308000 1 509 1 chr1A.!!$F1 508
6 TraesCS1D01G189500 chr5D 356328640 356329312 672 True 1136.000000 1136 97.177000 3391 4062 1 chr5D.!!$R1 671
7 TraesCS1D01G189500 chr2D 131419739 131420406 667 True 1123.000000 1123 97.015000 3394 4062 1 chr2D.!!$R1 668
8 TraesCS1D01G189500 chr2D 556197543 556198224 681 False 1105.000000 1105 95.912000 3387 4069 1 chr2D.!!$F1 682
9 TraesCS1D01G189500 chr3A 588658152 588659678 1526 False 653.500000 1092 84.878000 1279 2984 2 chr3A.!!$F1 1705
10 TraesCS1D01G189500 chr3A 588724905 588728386 3481 False 331.000000 399 89.537500 1257 2973 4 chr3A.!!$F2 1716
11 TraesCS1D01G189500 chr3D 446854647 446856178 1531 False 660.500000 1088 86.414500 1263 2973 2 chr3D.!!$F1 1710
12 TraesCS1D01G189500 chr3D 446910628 446913020 2392 False 358.000000 551 87.145250 1279 2982 4 chr3D.!!$F2 1703
13 TraesCS1D01G189500 chr3B 620002954 620003624 670 False 1066.000000 1066 95.380000 3394 4063 1 chr3B.!!$F1 669
14 TraesCS1D01G189500 chr3B 586341402 586342917 1515 False 470.333333 839 88.683333 1263 2973 3 chr3B.!!$F3 1710
15 TraesCS1D01G189500 chr3B 586422359 586426952 4593 False 403.333333 597 86.781667 1250 2982 3 chr3B.!!$F4 1732
16 TraesCS1D01G189500 chr7B 465126153 465126822 669 True 1064.000000 1064 95.373000 3394 4062 1 chr7B.!!$R1 668
17 TraesCS1D01G189500 chr7B 559947670 559948198 528 True 577.000000 577 86.981000 1 509 1 chr7B.!!$R2 508
18 TraesCS1D01G189500 chr2B 72504326 72505012 686 True 1062.000000 1062 94.622000 3384 4069 1 chr2B.!!$R1 685
19 TraesCS1D01G189500 chr6D 366257048 366257717 669 True 1059.000000 1059 95.224000 3394 4062 1 chr6D.!!$R1 668
20 TraesCS1D01G189500 chr6D 457628239 457628746 507 True 451.000000 451 83.427000 1 509 1 chr6D.!!$R2 508
21 TraesCS1D01G189500 chr6D 413015992 413016547 555 False 304.500000 501 88.114000 1 514 2 chr6D.!!$F1 513
22 TraesCS1D01G189500 chr7A 8846907 8847415 508 False 752.000000 752 93.346000 1 509 1 chr7A.!!$F1 508
23 TraesCS1D01G189500 chr2A 753474010 753474513 503 False 752.000000 752 93.529000 1 509 1 chr2A.!!$F2 508
24 TraesCS1D01G189500 chr7D 19660555 19662425 1870 True 335.000000 416 92.924500 1 514 2 chr7D.!!$R1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
622 2031 0.171455 TGGTGTGGTGTCAAAAACGC 59.829 50.0 0.00 0.0 37.67 4.84 F
623 2032 0.454196 GGTGTGGTGTCAAAAACGCT 59.546 50.0 0.00 0.0 38.49 5.07 F
1063 2475 0.522076 GGGCGTACGAGTTAGACACG 60.522 60.0 21.65 0.0 38.15 4.49 F
1231 4794 0.610232 ATGCCCTCACAAAGTCAGCC 60.610 55.0 0.00 0.0 0.00 4.85 F
2867 11096 0.596083 AGATGAAGATCTTCGCGGCG 60.596 55.0 26.32 17.7 42.28 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1591 5234 1.471684 CTTTCATCAGCAAGGCCTGAC 59.528 52.381 5.69 0.23 44.00 3.51 R
2042 5718 1.646912 TGTAATCCACCTCACCGGAA 58.353 50.000 9.46 0.00 34.22 4.30 R
2777 10676 0.036952 AGACCATGAAGCAGGTGTCG 60.037 55.000 0.00 0.00 38.50 4.35 R
3045 11311 0.179215 GCACACAAGTCGCATAGCAC 60.179 55.000 0.00 0.00 0.00 4.40 R
4063 12384 2.680913 CGCTGCCCCAACTTCGAAG 61.681 63.158 23.43 23.43 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
196 201 7.134815 AGTGTTTCGAAAATGAGTGAGATTTG 58.865 34.615 13.10 0.00 0.00 2.32
327 1358 4.829064 TCGGTTGAAGAAAATGAACTGG 57.171 40.909 0.00 0.00 0.00 4.00
340 1371 5.683876 AATGAACTGGCATAGTCTGTACT 57.316 39.130 0.00 0.00 39.18 2.73
451 1860 9.057089 GTATTGTATATAGCTTTTGAGTTGGCT 57.943 33.333 0.00 0.00 38.62 4.75
509 1918 2.292292 CCACCGGTAAAAGACACTTTGG 59.708 50.000 6.87 0.00 0.00 3.28
522 1931 0.251341 ACTTTGGGGTGTGCTCATCC 60.251 55.000 9.68 9.68 43.71 3.51
527 1936 1.204146 GGGGTGTGCTCATCCTCTTA 58.796 55.000 17.24 0.00 43.90 2.10
540 1949 1.909302 TCCTCTTAACTTGCCTCCCTG 59.091 52.381 0.00 0.00 0.00 4.45
542 1951 2.507471 CCTCTTAACTTGCCTCCCTGAT 59.493 50.000 0.00 0.00 0.00 2.90
561 1970 3.117701 TGATGAGGGAGTTGTGGTTTCAA 60.118 43.478 0.00 0.00 0.00 2.69
572 1981 4.545823 TGTGGTTTCAACTTTCATCGTC 57.454 40.909 0.00 0.00 0.00 4.20
586 1995 2.685387 ATCGTCGAGGGAAGCGCATC 62.685 60.000 11.47 7.28 0.00 3.91
589 1998 2.509336 CGAGGGAAGCGCATCGTT 60.509 61.111 11.47 0.00 0.00 3.85
590 1999 2.517450 CGAGGGAAGCGCATCGTTC 61.517 63.158 11.47 7.55 0.00 3.95
599 2008 0.247458 GCGCATCGTTCAAGAAGCTC 60.247 55.000 0.30 0.00 33.22 4.09
605 2014 1.630244 CGTTCAAGAAGCTCGCCTGG 61.630 60.000 0.00 0.00 0.00 4.45
608 2017 1.302033 CAAGAAGCTCGCCTGGTGT 60.302 57.895 7.20 0.00 0.00 4.16
609 2018 1.302033 AAGAAGCTCGCCTGGTGTG 60.302 57.895 7.20 6.02 0.00 3.82
610 2019 2.738213 AAGAAGCTCGCCTGGTGTGG 62.738 60.000 7.20 3.15 0.00 4.17
611 2020 3.537206 GAAGCTCGCCTGGTGTGGT 62.537 63.158 7.20 7.68 0.00 4.16
612 2021 3.832237 AAGCTCGCCTGGTGTGGTG 62.832 63.158 13.91 2.23 38.85 4.17
614 2023 2.357517 CTCGCCTGGTGTGGTGTC 60.358 66.667 7.20 0.00 38.63 3.67
615 2024 3.157949 TCGCCTGGTGTGGTGTCA 61.158 61.111 7.20 0.00 38.63 3.58
616 2025 2.203139 CGCCTGGTGTGGTGTCAA 60.203 61.111 0.00 0.00 33.25 3.18
617 2026 1.821759 CGCCTGGTGTGGTGTCAAA 60.822 57.895 0.00 0.00 33.25 2.69
618 2027 1.380403 CGCCTGGTGTGGTGTCAAAA 61.380 55.000 0.00 0.00 33.25 2.44
619 2028 0.820871 GCCTGGTGTGGTGTCAAAAA 59.179 50.000 0.00 0.00 0.00 1.94
620 2029 1.470805 GCCTGGTGTGGTGTCAAAAAC 60.471 52.381 0.00 0.00 0.00 2.43
621 2030 1.202245 CCTGGTGTGGTGTCAAAAACG 60.202 52.381 0.00 0.00 0.00 3.60
622 2031 0.171455 TGGTGTGGTGTCAAAAACGC 59.829 50.000 0.00 0.00 37.67 4.84
623 2032 0.454196 GGTGTGGTGTCAAAAACGCT 59.546 50.000 0.00 0.00 38.49 5.07
624 2033 1.533129 GGTGTGGTGTCAAAAACGCTC 60.533 52.381 0.00 0.00 38.49 5.03
625 2034 1.400494 GTGTGGTGTCAAAAACGCTCT 59.600 47.619 0.00 0.00 38.49 4.09
627 2036 3.064271 GTGTGGTGTCAAAAACGCTCTTA 59.936 43.478 0.00 0.00 38.49 2.10
628 2037 3.880490 TGTGGTGTCAAAAACGCTCTTAT 59.120 39.130 0.00 0.00 38.49 1.73
629 2038 5.049954 GTGTGGTGTCAAAAACGCTCTTATA 60.050 40.000 0.00 0.00 38.49 0.98
631 2040 6.205853 TGTGGTGTCAAAAACGCTCTTATATT 59.794 34.615 0.00 0.00 38.49 1.28
632 2041 7.388224 TGTGGTGTCAAAAACGCTCTTATATTA 59.612 33.333 0.00 0.00 38.49 0.98
633 2042 8.395633 GTGGTGTCAAAAACGCTCTTATATTAT 58.604 33.333 0.00 0.00 38.49 1.28
634 2043 8.394877 TGGTGTCAAAAACGCTCTTATATTATG 58.605 33.333 0.00 0.00 38.49 1.90
636 2045 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
637 2046 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
639 2048 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
640 2049 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
641 2050 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
642 2051 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
645 2054 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
667 2079 4.510571 AGTAAGACGTTGTGGTTTCTGTT 58.489 39.130 0.00 0.00 0.00 3.16
681 2093 6.431234 GTGGTTTCTGTTAATGGAAGTCAGAT 59.569 38.462 0.00 0.00 35.54 2.90
683 2095 7.824289 TGGTTTCTGTTAATGGAAGTCAGATAG 59.176 37.037 0.00 0.00 35.54 2.08
687 2099 7.786030 TCTGTTAATGGAAGTCAGATAGGAAG 58.214 38.462 0.00 0.00 31.51 3.46
696 2108 6.351796 GGAAGTCAGATAGGAAGCTCTCTTTT 60.352 42.308 0.00 0.00 31.48 2.27
697 2109 6.619329 AGTCAGATAGGAAGCTCTCTTTTT 57.381 37.500 0.00 0.00 31.48 1.94
698 2110 6.639563 AGTCAGATAGGAAGCTCTCTTTTTC 58.360 40.000 0.00 0.00 31.48 2.29
699 2111 6.212388 AGTCAGATAGGAAGCTCTCTTTTTCA 59.788 38.462 0.00 0.00 31.48 2.69
700 2112 6.876257 GTCAGATAGGAAGCTCTCTTTTTCAA 59.124 38.462 0.00 0.00 31.48 2.69
754 2166 3.833070 ACACTATTATGGATCGGAGGGAC 59.167 47.826 0.00 0.00 0.00 4.46
793 2205 6.381420 TCCTTGTTAGAGATCTTAGACTTGGG 59.619 42.308 0.00 0.00 0.00 4.12
802 2214 6.396450 AGATCTTAGACTTGGGTTCGTTAAC 58.604 40.000 0.00 0.00 34.66 2.01
844 2256 4.111916 CCCATTTTATCGTGCAATTGGAC 58.888 43.478 19.22 19.22 0.00 4.02
859 2271 1.577468 TGGACGTGCTAACAACACAG 58.423 50.000 8.99 0.00 37.93 3.66
878 2290 3.059188 ACAGGTGTAAGAATTTTGACGCG 60.059 43.478 3.53 3.53 0.00 6.01
879 2291 2.482721 AGGTGTAAGAATTTTGACGCGG 59.517 45.455 12.47 0.00 0.00 6.46
885 2297 4.663636 AAGAATTTTGACGCGGAACTAG 57.336 40.909 12.47 0.00 0.00 2.57
894 2306 3.819337 TGACGCGGAACTAGCTAATCTAT 59.181 43.478 12.47 0.00 0.00 1.98
895 2307 4.999311 TGACGCGGAACTAGCTAATCTATA 59.001 41.667 12.47 0.00 0.00 1.31
972 2384 0.901580 TTGTGGGACGGAGGGAGTAC 60.902 60.000 0.00 0.00 0.00 2.73
1016 2428 4.256920 AGAGTGATGTTATTGGCTGACAC 58.743 43.478 0.00 0.00 0.00 3.67
1030 2442 2.029728 GCTGACACGTGTATGATGCTTC 59.970 50.000 23.44 6.22 0.00 3.86
1063 2475 0.522076 GGGCGTACGAGTTAGACACG 60.522 60.000 21.65 0.00 38.15 4.49
1067 2479 1.903139 CGTACGAGTTAGACACGCTTG 59.097 52.381 10.44 0.00 35.63 4.01
1068 2480 1.647702 GTACGAGTTAGACACGCTTGC 59.352 52.381 0.00 0.00 35.63 4.01
1080 2492 2.677836 ACACGCTTGCACCAATATACTG 59.322 45.455 0.00 0.00 0.00 2.74
1084 2496 3.546815 CGCTTGCACCAATATACTGCTTC 60.547 47.826 0.00 0.00 0.00 3.86
1102 2523 6.200475 ACTGCTTCTGTTAAGACGTTTTAGAC 59.800 38.462 0.00 2.47 29.98 2.59
1103 2524 6.044046 TGCTTCTGTTAAGACGTTTTAGACA 58.956 36.000 0.00 6.27 29.98 3.41
1111 2532 8.594687 TGTTAAGACGTTTTAGACAGTACAAAC 58.405 33.333 0.00 0.00 0.00 2.93
1115 2536 6.255020 AGACGTTTTAGACAGTACAAACAGTG 59.745 38.462 0.00 0.00 0.00 3.66
1123 2544 3.119280 ACAGTACAAACAGTGCCCAAAAC 60.119 43.478 0.00 0.00 32.67 2.43
1140 2561 5.358922 CCAAAACAATTCATGGTCAGTTGT 58.641 37.500 0.00 0.00 34.74 3.32
1146 2567 7.206981 ACAATTCATGGTCAGTTGTCTAAAG 57.793 36.000 0.00 0.00 0.00 1.85
1200 2621 8.427276 ACTAGCTAGTACCAATATACCCAAAAC 58.573 37.037 24.97 0.00 34.13 2.43
1202 2623 8.557304 AGCTAGTACCAATATACCCAAAACTA 57.443 34.615 0.00 0.00 0.00 2.24
1204 2625 9.049523 GCTAGTACCAATATACCCAAAACTAAC 57.950 37.037 0.00 0.00 0.00 2.34
1222 4785 5.815581 ACTAACAAAATAGATGCCCTCACA 58.184 37.500 0.00 0.00 0.00 3.58
1231 4794 0.610232 ATGCCCTCACAAAGTCAGCC 60.610 55.000 0.00 0.00 0.00 4.85
1232 4795 1.228245 GCCCTCACAAAGTCAGCCA 60.228 57.895 0.00 0.00 0.00 4.75
1591 5234 1.293924 GTGCATGTCTCTTGGATCGG 58.706 55.000 0.00 0.00 0.00 4.18
1909 5566 2.230508 CCGTAACTAACCTGCTCTGACA 59.769 50.000 0.00 0.00 0.00 3.58
1978 5650 6.513180 TCAAGTCTTGACTTGGTTACTACTG 58.487 40.000 30.92 12.35 45.15 2.74
1989 5665 3.762288 TGGTTACTACTGCTCGACTTGAT 59.238 43.478 0.00 0.00 0.00 2.57
2042 5718 4.457496 CAGGCGACCACCAGCGAT 62.457 66.667 0.00 0.00 0.00 4.58
2675 10572 2.424601 GTCACCCATGAACATCACCATG 59.575 50.000 0.00 0.00 39.72 3.66
2676 10573 2.308275 TCACCCATGAACATCACCATGA 59.692 45.455 0.00 0.00 41.88 3.07
2687 10584 6.322456 TGAACATCACCATGACCTTACAAAAA 59.678 34.615 0.00 0.00 33.72 1.94
2725 10622 0.877071 CTTGTCACTGCCGCTGAAAT 59.123 50.000 4.02 0.00 0.00 2.17
2729 10626 1.443194 CACTGCCGCTGAAATGTGC 60.443 57.895 4.02 0.00 0.00 4.57
2731 10628 1.136147 CTGCCGCTGAAATGTGCTC 59.864 57.895 0.00 0.00 0.00 4.26
2736 10633 1.129998 CCGCTGAAATGTGCTCTGAAG 59.870 52.381 0.00 0.00 0.00 3.02
2738 10635 2.995939 CGCTGAAATGTGCTCTGAAGTA 59.004 45.455 0.00 0.00 0.00 2.24
2747 10646 4.560128 TGTGCTCTGAAGTAAACTAGCTG 58.440 43.478 0.00 0.00 0.00 4.24
2759 10658 5.773680 AGTAAACTAGCTGTAGTTGTGAGGA 59.226 40.000 2.64 0.00 46.88 3.71
2760 10659 5.546621 AAACTAGCTGTAGTTGTGAGGAA 57.453 39.130 2.64 0.00 46.88 3.36
2761 10660 5.746990 AACTAGCTGTAGTTGTGAGGAAT 57.253 39.130 0.97 0.00 45.99 3.01
2762 10661 5.746990 ACTAGCTGTAGTTGTGAGGAATT 57.253 39.130 0.00 0.00 35.88 2.17
2794 10693 0.615331 ATCGACACCTGCTTCATGGT 59.385 50.000 0.00 0.00 36.96 3.55
2801 10700 0.738975 CCTGCTTCATGGTCTGCATG 59.261 55.000 0.00 0.00 34.79 4.06
2867 11096 0.596083 AGATGAAGATCTTCGCGGCG 60.596 55.000 26.32 17.70 42.28 6.46
3011 11264 1.378911 TATGTGGCAGCTGGCTTGG 60.379 57.895 36.39 1.49 44.01 3.61
3045 11311 0.249868 TTGTGCAGAGACACGAAGGG 60.250 55.000 0.00 0.00 43.74 3.95
3064 11330 0.179215 GTGCTATGCGACTTGTGTGC 60.179 55.000 0.00 0.00 0.00 4.57
3142 11408 3.244181 TGCACAGTAGCATCTCTTGTGAA 60.244 43.478 7.07 0.00 40.11 3.18
3248 11560 1.128809 TACGTTTCTGGGGGCCTTCA 61.129 55.000 0.84 1.29 0.00 3.02
3249 11561 1.228429 CGTTTCTGGGGGCCTTCAA 60.228 57.895 0.84 0.00 0.00 2.69
3254 11566 1.675641 CTGGGGGCCTTCAAGTTCG 60.676 63.158 0.84 0.00 0.00 3.95
3442 11758 2.031495 GGTGGAGCTACCCCATATCT 57.969 55.000 0.00 0.00 35.91 1.98
4063 12384 0.771127 TACCCATTGCCATCCCTAGC 59.229 55.000 0.00 0.00 0.00 3.42
4069 12390 0.908910 TTGCCATCCCTAGCTTCGAA 59.091 50.000 0.00 0.00 0.00 3.71
4070 12391 0.465705 TGCCATCCCTAGCTTCGAAG 59.534 55.000 21.02 21.02 0.00 3.79
4071 12392 0.466124 GCCATCCCTAGCTTCGAAGT 59.534 55.000 25.24 14.72 0.00 3.01
4072 12393 1.134371 GCCATCCCTAGCTTCGAAGTT 60.134 52.381 25.24 22.04 0.00 2.66
4073 12394 2.555199 CCATCCCTAGCTTCGAAGTTG 58.445 52.381 25.24 15.12 0.00 3.16
4074 12395 2.555199 CATCCCTAGCTTCGAAGTTGG 58.445 52.381 25.24 20.86 0.00 3.77
4075 12396 0.902531 TCCCTAGCTTCGAAGTTGGG 59.097 55.000 29.65 29.65 37.57 4.12
4076 12397 3.460648 CCTAGCTTCGAAGTTGGGG 57.539 57.895 29.17 22.50 34.87 4.96
4077 12398 0.744771 CCTAGCTTCGAAGTTGGGGC 60.745 60.000 29.17 15.13 34.87 5.80
4078 12399 0.036388 CTAGCTTCGAAGTTGGGGCA 60.036 55.000 25.24 4.25 0.00 5.36
4079 12400 0.036388 TAGCTTCGAAGTTGGGGCAG 60.036 55.000 25.24 0.00 0.00 4.85
4080 12401 2.982744 GCTTCGAAGTTGGGGCAGC 61.983 63.158 25.24 5.60 0.00 5.25
4081 12402 2.668212 TTCGAAGTTGGGGCAGCG 60.668 61.111 0.00 0.00 0.00 5.18
4085 12406 4.947147 AAGTTGGGGCAGCGCGAA 62.947 61.111 12.10 2.55 0.00 4.70
4086 12407 4.722700 AGTTGGGGCAGCGCGAAT 62.723 61.111 12.10 0.00 0.00 3.34
4087 12408 4.481112 GTTGGGGCAGCGCGAATG 62.481 66.667 12.10 9.16 0.00 2.67
4091 12412 4.838152 GGGCAGCGCGAATGGAGA 62.838 66.667 12.10 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 179 7.914537 AACAAATCTCACTCATTTTCGAAAC 57.085 32.000 10.79 0.00 0.00 2.78
178 183 9.663904 TTAGAAAACAAATCTCACTCATTTTCG 57.336 29.630 0.00 0.00 38.80 3.46
290 297 2.096248 ACCGATCAACCTCTCTCACTC 58.904 52.381 0.00 0.00 0.00 3.51
327 1358 5.955488 TCACTTCAGAAGTACAGACTATGC 58.045 41.667 15.73 0.00 40.46 3.14
340 1371 3.319405 GTCACTCACCTCTCACTTCAGAA 59.681 47.826 0.00 0.00 0.00 3.02
425 1833 9.057089 AGCCAACTCAAAAGCTATATACAATAC 57.943 33.333 0.00 0.00 32.73 1.89
428 1836 6.183360 GCAGCCAACTCAAAAGCTATATACAA 60.183 38.462 0.00 0.00 33.33 2.41
437 1846 0.038801 GAGGCAGCCAACTCAAAAGC 60.039 55.000 15.80 0.00 33.95 3.51
451 1860 3.873801 GCTTCTTTCACCAATAGGAGGCA 60.874 47.826 0.00 0.00 38.69 4.75
509 1918 2.237392 AGTTAAGAGGATGAGCACACCC 59.763 50.000 0.00 0.00 0.00 4.61
522 1931 3.198635 TCATCAGGGAGGCAAGTTAAGAG 59.801 47.826 0.00 0.00 0.00 2.85
540 1949 3.140325 TGAAACCACAACTCCCTCATC 57.860 47.619 0.00 0.00 0.00 2.92
542 1951 2.650322 GTTGAAACCACAACTCCCTCA 58.350 47.619 0.00 0.00 44.34 3.86
550 1959 4.495019 CGACGATGAAAGTTGAAACCACAA 60.495 41.667 0.00 0.00 0.00 3.33
561 1970 1.404315 GCTTCCCTCGACGATGAAAGT 60.404 52.381 0.00 0.00 0.00 2.66
572 1981 2.509336 AACGATGCGCTTCCCTCG 60.509 61.111 16.74 14.44 37.17 4.63
586 1995 1.630244 CCAGGCGAGCTTCTTGAACG 61.630 60.000 0.00 0.00 0.00 3.95
589 1998 1.004560 CACCAGGCGAGCTTCTTGA 60.005 57.895 0.00 0.00 0.00 3.02
590 1999 1.302033 ACACCAGGCGAGCTTCTTG 60.302 57.895 0.00 0.00 0.00 3.02
599 2008 1.380403 TTTTGACACCACACCAGGCG 61.380 55.000 0.00 0.00 0.00 5.52
605 2014 1.400494 AGAGCGTTTTTGACACCACAC 59.600 47.619 0.00 0.00 0.00 3.82
608 2017 6.811253 AATATAAGAGCGTTTTTGACACCA 57.189 33.333 0.00 0.00 0.00 4.17
609 2018 7.855904 CCATAATATAAGAGCGTTTTTGACACC 59.144 37.037 0.00 0.00 0.00 4.16
610 2019 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
611 2020 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
612 2021 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
614 2023 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
615 2024 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
616 2025 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
617 2026 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
618 2027 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
619 2028 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
620 2029 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
621 2030 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
622 2031 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
623 2032 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
624 2033 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
625 2034 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
627 2036 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
628 2037 4.106825 TCTTACTCCCTCCGTCCCATAATA 59.893 45.833 0.00 0.00 0.00 0.98
629 2038 3.116862 TCTTACTCCCTCCGTCCCATAAT 60.117 47.826 0.00 0.00 0.00 1.28
631 2040 1.854939 TCTTACTCCCTCCGTCCCATA 59.145 52.381 0.00 0.00 0.00 2.74
632 2041 0.635009 TCTTACTCCCTCCGTCCCAT 59.365 55.000 0.00 0.00 0.00 4.00
633 2042 0.324091 GTCTTACTCCCTCCGTCCCA 60.324 60.000 0.00 0.00 0.00 4.37
634 2043 1.382692 CGTCTTACTCCCTCCGTCCC 61.383 65.000 0.00 0.00 0.00 4.46
636 2045 1.135460 CAACGTCTTACTCCCTCCGTC 60.135 57.143 0.00 0.00 0.00 4.79
637 2046 0.886563 CAACGTCTTACTCCCTCCGT 59.113 55.000 0.00 0.00 0.00 4.69
639 2048 1.067071 CCACAACGTCTTACTCCCTCC 60.067 57.143 0.00 0.00 0.00 4.30
640 2049 1.617357 ACCACAACGTCTTACTCCCTC 59.383 52.381 0.00 0.00 0.00 4.30
641 2050 1.713297 ACCACAACGTCTTACTCCCT 58.287 50.000 0.00 0.00 0.00 4.20
642 2051 2.538512 AACCACAACGTCTTACTCCC 57.461 50.000 0.00 0.00 0.00 4.30
645 2054 4.133013 ACAGAAACCACAACGTCTTACT 57.867 40.909 0.00 0.00 0.00 2.24
667 2079 6.139671 AGAGCTTCCTATCTGACTTCCATTA 58.860 40.000 0.00 0.00 0.00 1.90
710 2122 8.146412 AGTGTCGTGGTTTTAGTTCTTTACTAT 58.854 33.333 0.00 0.00 39.07 2.12
713 2125 6.594284 AGTGTCGTGGTTTTAGTTCTTTAC 57.406 37.500 0.00 0.00 0.00 2.01
730 2142 3.119459 CCCTCCGATCCATAATAGTGTCG 60.119 52.174 0.00 0.00 0.00 4.35
785 2197 3.832615 ACAGTTAACGAACCCAAGTCT 57.167 42.857 0.00 0.00 36.08 3.24
844 2256 1.295792 ACACCTGTGTTGTTAGCACG 58.704 50.000 0.00 0.00 41.83 5.34
859 2271 2.481185 TCCGCGTCAAAATTCTTACACC 59.519 45.455 4.92 0.00 0.00 4.16
863 2275 4.092383 GCTAGTTCCGCGTCAAAATTCTTA 59.908 41.667 4.92 0.00 0.00 2.10
947 2359 1.406887 CCCTCCGTCCCACAACATAAG 60.407 57.143 0.00 0.00 0.00 1.73
951 2363 2.122769 TCCCTCCGTCCCACAACA 60.123 61.111 0.00 0.00 0.00 3.33
952 2364 0.901580 TACTCCCTCCGTCCCACAAC 60.902 60.000 0.00 0.00 0.00 3.32
955 2367 0.901580 TTGTACTCCCTCCGTCCCAC 60.902 60.000 0.00 0.00 0.00 4.61
972 2384 0.879765 CTTGCTGAGGCCAACTCTTG 59.120 55.000 5.01 0.00 46.72 3.02
995 2407 3.062639 CGTGTCAGCCAATAACATCACTC 59.937 47.826 0.00 0.00 0.00 3.51
1016 2428 1.921243 TGTCCGAAGCATCATACACG 58.079 50.000 0.00 0.00 0.00 4.49
1030 2442 0.672401 ACGCCCTGTGTATTTGTCCG 60.672 55.000 0.00 0.00 0.00 4.79
1063 2475 3.629398 AGAAGCAGTATATTGGTGCAAGC 59.371 43.478 8.02 0.00 39.80 4.01
1067 2479 6.538742 TCTTAACAGAAGCAGTATATTGGTGC 59.461 38.462 0.26 0.00 37.48 5.01
1068 2480 7.254117 CGTCTTAACAGAAGCAGTATATTGGTG 60.254 40.741 0.26 0.00 0.00 4.17
1080 2492 6.200475 ACTGTCTAAAACGTCTTAACAGAAGC 59.800 38.462 20.74 0.00 36.89 3.86
1084 2496 7.919313 TGTACTGTCTAAAACGTCTTAACAG 57.081 36.000 15.96 15.96 38.80 3.16
1102 2523 3.119316 TGTTTTGGGCACTGTTTGTACTG 60.119 43.478 0.00 0.00 0.00 2.74
1103 2524 3.093057 TGTTTTGGGCACTGTTTGTACT 58.907 40.909 0.00 0.00 0.00 2.73
1111 2532 3.068560 CCATGAATTGTTTTGGGCACTG 58.931 45.455 0.00 0.00 0.00 3.66
1115 2536 3.244181 ACTGACCATGAATTGTTTTGGGC 60.244 43.478 0.00 0.00 37.80 5.36
1123 2544 7.080099 CACTTTAGACAACTGACCATGAATTG 58.920 38.462 0.00 0.00 0.00 2.32
1198 2619 6.245408 TGTGAGGGCATCTATTTTGTTAGTT 58.755 36.000 0.00 0.00 0.00 2.24
1200 2621 6.757897 TTGTGAGGGCATCTATTTTGTTAG 57.242 37.500 0.00 0.00 0.00 2.34
1202 2623 5.539955 ACTTTGTGAGGGCATCTATTTTGTT 59.460 36.000 0.00 0.00 0.00 2.83
1204 2625 5.183713 TGACTTTGTGAGGGCATCTATTTTG 59.816 40.000 0.00 0.00 0.00 2.44
1209 4772 2.355108 GCTGACTTTGTGAGGGCATCTA 60.355 50.000 0.00 0.00 0.00 1.98
1222 4785 3.375299 GCGAATAACATCTGGCTGACTTT 59.625 43.478 0.00 0.00 0.00 2.66
1231 4794 3.870007 GCATGTCAGCGAATAACATCTG 58.130 45.455 0.00 0.00 31.43 2.90
1591 5234 1.471684 CTTTCATCAGCAAGGCCTGAC 59.528 52.381 5.69 0.23 44.00 3.51
1909 5566 3.753272 CGTGTTCAAGTTGATGGAAGGAT 59.247 43.478 6.36 0.00 0.00 3.24
1989 5665 3.258372 AGCAAATCACACTTCGACTCCTA 59.742 43.478 0.00 0.00 0.00 2.94
2042 5718 1.646912 TGTAATCCACCTCACCGGAA 58.353 50.000 9.46 0.00 34.22 4.30
2048 5724 4.422057 TCAGGTACTTGTAATCCACCTCA 58.578 43.478 4.75 0.00 37.52 3.86
2130 5806 2.205074 GCACATCATGTAGAGGAACCG 58.795 52.381 0.00 0.00 0.00 4.44
2210 5886 4.508128 TCGATGGACGCGGCTTCC 62.508 66.667 13.91 17.86 42.26 3.46
2687 10584 3.756933 AGAACATTGGCATGCAGTTTT 57.243 38.095 21.36 10.38 33.05 2.43
2699 10596 1.664016 GCGGCAGTGACAAGAACATTG 60.664 52.381 0.00 0.00 0.00 2.82
2700 10597 0.593128 GCGGCAGTGACAAGAACATT 59.407 50.000 0.00 0.00 0.00 2.71
2725 10622 4.039245 ACAGCTAGTTTACTTCAGAGCACA 59.961 41.667 5.47 0.00 32.28 4.57
2729 10626 7.327275 CACAACTACAGCTAGTTTACTTCAGAG 59.673 40.741 0.00 0.00 40.64 3.35
2731 10628 7.145985 TCACAACTACAGCTAGTTTACTTCAG 58.854 38.462 0.00 0.00 40.64 3.02
2736 10633 6.022163 TCCTCACAACTACAGCTAGTTTAC 57.978 41.667 0.00 0.00 40.64 2.01
2738 10635 5.546621 TTCCTCACAACTACAGCTAGTTT 57.453 39.130 0.00 0.00 40.64 2.66
2770 10669 2.959516 TGAAGCAGGTGTCGATAGTTG 58.040 47.619 0.00 0.00 37.40 3.16
2775 10674 0.615331 ACCATGAAGCAGGTGTCGAT 59.385 50.000 0.00 0.00 36.60 3.59
2777 10676 0.036952 AGACCATGAAGCAGGTGTCG 60.037 55.000 0.00 0.00 38.50 4.35
2780 10679 0.607217 TGCAGACCATGAAGCAGGTG 60.607 55.000 0.00 0.00 38.50 4.00
2794 10693 4.783621 GACCGGCCTGCATGCAGA 62.784 66.667 42.21 13.57 46.30 4.26
2807 11036 2.835431 AGGCAGATCCTCGGACCG 60.835 66.667 7.84 7.84 43.20 4.79
2840 11069 4.798924 GCGAAGATCTTCATCTGCCTGTAT 60.799 45.833 29.93 0.00 38.55 2.29
2867 11096 1.869690 GAAGAAACGGAGCAGCACC 59.130 57.895 0.00 0.00 0.00 5.01
3016 11269 3.114616 CTGCACAAGGACGCTCGG 61.115 66.667 0.00 0.00 0.00 4.63
3045 11311 0.179215 GCACACAAGTCGCATAGCAC 60.179 55.000 0.00 0.00 0.00 4.40
3047 11313 1.059369 CGCACACAAGTCGCATAGC 59.941 57.895 0.00 0.00 0.00 2.97
3142 11408 3.941483 GAGGTCCGATTCACAAATCACAT 59.059 43.478 0.00 0.00 41.22 3.21
3248 11560 1.871039 CGGTCCATTTGTCACGAACTT 59.129 47.619 0.00 0.00 0.00 2.66
3249 11561 1.508632 CGGTCCATTTGTCACGAACT 58.491 50.000 0.00 0.00 0.00 3.01
3254 11566 2.686816 CCCGCGGTCCATTTGTCAC 61.687 63.158 26.12 0.00 0.00 3.67
3312 11628 6.071840 GGAACGCTGGTACTAGATGAATAGAT 60.072 42.308 10.90 0.00 0.00 1.98
3314 11630 5.462405 GGAACGCTGGTACTAGATGAATAG 58.538 45.833 10.90 0.00 0.00 1.73
3315 11631 5.449107 GGAACGCTGGTACTAGATGAATA 57.551 43.478 10.90 0.00 0.00 1.75
3316 11632 4.323553 GGAACGCTGGTACTAGATGAAT 57.676 45.455 10.90 0.00 0.00 2.57
3508 11825 0.601558 CCTATCGGGTGACGGGTATG 59.398 60.000 0.00 0.00 44.45 2.39
3544 11862 2.549064 AAACGCGGGTACTTTTACCT 57.451 45.000 12.47 0.00 46.56 3.08
3552 11870 1.782044 TGTGTTCTAAACGCGGGTAC 58.218 50.000 12.47 0.00 44.64 3.34
3811 12130 4.838986 TCCCTCCTAATCATGCTAGGTAAC 59.161 45.833 16.18 0.00 37.72 2.50
4063 12384 2.680913 CGCTGCCCCAACTTCGAAG 61.681 63.158 23.43 23.43 0.00 3.79
4069 12390 4.722700 ATTCGCGCTGCCCCAACT 62.723 61.111 5.56 0.00 0.00 3.16
4070 12391 4.481112 CATTCGCGCTGCCCCAAC 62.481 66.667 5.56 0.00 0.00 3.77
4074 12395 4.838152 TCTCCATTCGCGCTGCCC 62.838 66.667 5.56 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.