Multiple sequence alignment - TraesCS1D01G188900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G188900 chr1D 100.000 2354 0 0 1 2354 261372559 261374912 0.000000e+00 4348
1 TraesCS1D01G188900 chr1A 91.463 1148 69 13 456 1583 338601373 338600235 0.000000e+00 1550
2 TraesCS1D01G188900 chr1A 80.645 465 41 16 1 454 338604055 338603629 4.880000e-82 315
3 TraesCS1D01G188900 chr1B 95.491 865 31 4 782 1644 350631474 350630616 0.000000e+00 1375
4 TraesCS1D01G188900 chr1B 94.020 602 18 4 1 592 350632512 350631919 0.000000e+00 896
5 TraesCS1D01G188900 chr1B 87.805 410 25 10 1677 2080 350629167 350628777 7.670000e-125 457
6 TraesCS1D01G188900 chr1B 95.057 263 12 1 2082 2343 350628650 350628388 1.680000e-111 412
7 TraesCS1D01G188900 chr1B 89.552 201 19 2 590 789 350631877 350631678 1.080000e-63 254
8 TraesCS1D01G188900 chr5A 84.936 312 22 17 1020 1326 683125617 683125908 2.290000e-75 292
9 TraesCS1D01G188900 chr4D 81.847 314 30 15 1016 1326 501234124 501233835 3.020000e-59 239
10 TraesCS1D01G188900 chr4D 91.018 167 14 1 1161 1326 501161638 501161472 8.470000e-55 224
11 TraesCS1D01G188900 chr4B 81.672 311 31 16 1020 1326 645084444 645084156 3.910000e-58 235


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G188900 chr1D 261372559 261374912 2353 False 4348.0 4348 100.000 1 2354 1 chr1D.!!$F1 2353
1 TraesCS1D01G188900 chr1A 338600235 338604055 3820 True 932.5 1550 86.054 1 1583 2 chr1A.!!$R1 1582
2 TraesCS1D01G188900 chr1B 350628388 350632512 4124 True 678.8 1375 92.385 1 2343 5 chr1B.!!$R1 2342

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
192 202 0.036952 AGACAGCACGGATTCACCAG 60.037 55.0 0.0 0.0 38.9 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1672 4216 0.033642 TAACACATGTCGACCCGCAA 59.966 50.0 14.12 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.413077 GCTACAGCCTAAAGATCCGGT 59.587 52.381 0.00 0.00 34.31 5.28
84 86 1.404181 CCAGATCACGGACGACACATT 60.404 52.381 0.00 0.00 0.00 2.71
85 87 2.337583 CAGATCACGGACGACACATTT 58.662 47.619 0.00 0.00 0.00 2.32
86 88 2.345641 CAGATCACGGACGACACATTTC 59.654 50.000 0.00 0.00 0.00 2.17
87 89 2.231478 AGATCACGGACGACACATTTCT 59.769 45.455 0.00 0.00 0.00 2.52
146 156 1.464997 GTCGGCAACTGAGGACAAATC 59.535 52.381 0.00 0.00 0.00 2.17
192 202 0.036952 AGACAGCACGGATTCACCAG 60.037 55.000 0.00 0.00 38.90 4.00
245 255 3.005554 AGACATTTTGGAGATCACGCTG 58.994 45.455 0.00 0.00 0.00 5.18
255 265 1.938577 AGATCACGCTGCATGATTGAC 59.061 47.619 12.83 0.33 36.92 3.18
258 268 0.098200 CACGCTGCATGATTGACTGG 59.902 55.000 0.00 0.00 0.00 4.00
364 375 0.523966 GTCTCGTGACTGTCTGGAGG 59.476 60.000 20.54 4.94 39.94 4.30
385 396 1.359475 GGACCGCTATGTCGACCTC 59.641 63.158 14.12 0.00 36.07 3.85
491 2766 3.700038 GTCCTTACTAGCTAACAGCCTGA 59.300 47.826 0.00 0.00 43.77 3.86
499 2774 1.734465 GCTAACAGCCTGATGTCACAC 59.266 52.381 0.00 0.00 34.48 3.82
504 2779 2.039480 ACAGCCTGATGTCACACTTCAT 59.961 45.455 0.00 0.00 32.80 2.57
505 2780 2.676839 CAGCCTGATGTCACACTTCATC 59.323 50.000 0.00 0.00 40.29 2.92
506 2781 2.303890 AGCCTGATGTCACACTTCATCA 59.696 45.455 7.45 7.45 45.07 3.07
665 2987 2.834638 ACCCTTCCATCAATTCCCTG 57.165 50.000 0.00 0.00 0.00 4.45
667 2989 1.063417 CCCTTCCATCAATTCCCTGCT 60.063 52.381 0.00 0.00 0.00 4.24
677 2999 4.885413 TCAATTCCCTGCTCAAAAATGTG 58.115 39.130 0.00 0.00 0.00 3.21
679 3001 5.070180 TCAATTCCCTGCTCAAAAATGTGAA 59.930 36.000 0.00 0.00 0.00 3.18
683 3005 6.662865 TCCCTGCTCAAAAATGTGAATTTA 57.337 33.333 0.00 0.00 0.00 1.40
706 3030 9.615295 TTTAATCTTTGTACGGCACTATTTTTC 57.385 29.630 0.00 0.00 0.00 2.29
729 3053 4.877282 TCGTTAGTCACATCACATCACAA 58.123 39.130 0.00 0.00 0.00 3.33
758 3082 2.100584 GCATCGGTCTCTCTGATTCAGT 59.899 50.000 13.23 0.00 39.87 3.41
767 3091 4.525874 TCTCTCTGATTCAGTTTGCTCTCA 59.474 41.667 13.23 0.00 32.61 3.27
771 3095 2.417586 TGATTCAGTTTGCTCTCATGCG 59.582 45.455 0.00 0.00 35.36 4.73
773 3097 1.718396 TCAGTTTGCTCTCATGCGAG 58.282 50.000 8.39 8.39 40.98 5.03
802 3337 1.352352 CCACCCAAACCATCTCACTCT 59.648 52.381 0.00 0.00 0.00 3.24
803 3338 2.616510 CCACCCAAACCATCTCACTCTC 60.617 54.545 0.00 0.00 0.00 3.20
804 3339 1.276421 ACCCAAACCATCTCACTCTCG 59.724 52.381 0.00 0.00 0.00 4.04
805 3340 1.406069 CCCAAACCATCTCACTCTCGG 60.406 57.143 0.00 0.00 0.00 4.63
806 3341 1.276421 CCAAACCATCTCACTCTCGGT 59.724 52.381 0.00 0.00 0.00 4.69
841 3377 1.227089 CCTCTCGCATCCAACTCCG 60.227 63.158 0.00 0.00 0.00 4.63
860 3396 1.805869 GCCATGGATCCTTCATCTCG 58.194 55.000 18.40 0.00 0.00 4.04
945 3481 0.581529 AGTCACAACAACATCGCACG 59.418 50.000 0.00 0.00 0.00 5.34
951 3487 0.179225 AACAACATCGCACGATTCGC 60.179 50.000 5.86 0.00 31.62 4.70
966 3502 3.485381 CGATTCGCTCTTGAACTCTCGTA 60.485 47.826 0.00 0.00 0.00 3.43
1101 3637 3.108289 CTGCTGGTGTCGTCGCTG 61.108 66.667 0.00 0.00 0.00 5.18
1527 4070 1.098050 AATGGATCGTTTCTGGCTGC 58.902 50.000 0.00 0.00 0.00 5.25
1606 4150 5.432645 TCTGTATTGGAATTTCGGTGCATA 58.567 37.500 0.00 0.00 0.00 3.14
1609 4153 6.734137 TGTATTGGAATTTCGGTGCATATTC 58.266 36.000 0.00 0.00 0.00 1.75
1658 4202 2.711895 CCTCAGGGAGGGAGACATAT 57.288 55.000 4.31 0.00 45.43 1.78
1659 4203 2.255406 CCTCAGGGAGGGAGACATATG 58.745 57.143 0.00 0.00 45.43 1.78
1661 4205 2.632028 CTCAGGGAGGGAGACATATGTG 59.368 54.545 14.43 0.00 34.24 3.21
1662 4206 2.247372 TCAGGGAGGGAGACATATGTGA 59.753 50.000 14.43 0.00 0.00 3.58
1663 4207 3.041211 CAGGGAGGGAGACATATGTGAA 58.959 50.000 14.43 0.00 0.00 3.18
1664 4208 3.649981 CAGGGAGGGAGACATATGTGAAT 59.350 47.826 14.43 0.00 0.00 2.57
1665 4209 3.649981 AGGGAGGGAGACATATGTGAATG 59.350 47.826 14.43 0.00 0.00 2.67
1666 4210 3.392616 GGGAGGGAGACATATGTGAATGT 59.607 47.826 14.43 0.00 42.75 2.71
1667 4211 4.141390 GGGAGGGAGACATATGTGAATGTT 60.141 45.833 14.43 0.00 40.17 2.71
1669 4213 5.888161 GGAGGGAGACATATGTGAATGTTTT 59.112 40.000 14.43 0.00 40.17 2.43
1670 4214 6.378280 GGAGGGAGACATATGTGAATGTTTTT 59.622 38.462 14.43 0.00 40.17 1.94
1690 5649 0.816018 TTTGCGGGTCGACATGTGTT 60.816 50.000 18.91 0.00 0.00 3.32
1699 5658 4.214545 GGGTCGACATGTGTTAATGTTTCA 59.785 41.667 18.91 0.00 40.87 2.69
1749 5708 2.746362 CAGCCCTCATGACAGTTTCTTC 59.254 50.000 0.00 0.00 0.00 2.87
1750 5709 2.373169 AGCCCTCATGACAGTTTCTTCA 59.627 45.455 0.00 0.00 0.00 3.02
1757 5716 5.917462 TCATGACAGTTTCTTCACAGAAGA 58.083 37.500 5.41 5.41 40.28 2.87
1803 5762 8.655970 GTGATTTTTCTTTGCAACTAAAACTGT 58.344 29.630 14.56 7.03 0.00 3.55
1847 5812 0.249911 GCCATCGAATAGGGTTCGCT 60.250 55.000 5.39 0.00 41.30 4.93
1853 5818 1.680338 GAATAGGGTTCGCTTGCCAT 58.320 50.000 0.00 0.00 0.00 4.40
1862 5827 2.418083 CGCTTGCCATCCCTTTCCC 61.418 63.158 0.00 0.00 0.00 3.97
1877 5842 1.140312 TTCCCAGTGAACCTCAGCTT 58.860 50.000 0.00 0.00 0.00 3.74
1948 5913 3.310307 TGGTGCTCCAGCTACGCA 61.310 61.111 2.64 0.18 42.66 5.24
1949 5914 2.047274 GGTGCTCCAGCTACGCAA 60.047 61.111 0.00 0.00 42.66 4.85
1950 5915 1.450312 GGTGCTCCAGCTACGCAAT 60.450 57.895 0.00 0.00 42.66 3.56
1951 5916 1.026718 GGTGCTCCAGCTACGCAATT 61.027 55.000 0.00 0.00 42.66 2.32
1952 5917 1.651987 GTGCTCCAGCTACGCAATTA 58.348 50.000 5.46 0.00 42.66 1.40
1953 5918 1.594862 GTGCTCCAGCTACGCAATTAG 59.405 52.381 5.46 0.00 42.66 1.73
1954 5919 1.207089 TGCTCCAGCTACGCAATTAGT 59.793 47.619 0.00 0.00 42.66 2.24
1955 5920 2.280628 GCTCCAGCTACGCAATTAGTT 58.719 47.619 0.00 0.00 38.21 2.24
1956 5921 3.118920 TGCTCCAGCTACGCAATTAGTTA 60.119 43.478 0.00 0.00 42.66 2.24
1957 5922 3.869246 GCTCCAGCTACGCAATTAGTTAA 59.131 43.478 0.00 0.00 38.21 2.01
2016 5981 3.359695 TGGACGAAATTAAGGAAGGGG 57.640 47.619 0.00 0.00 0.00 4.79
2017 5982 2.025699 TGGACGAAATTAAGGAAGGGGG 60.026 50.000 0.00 0.00 0.00 5.40
2018 5983 2.022195 GACGAAATTAAGGAAGGGGGC 58.978 52.381 0.00 0.00 0.00 5.80
2035 6000 2.689813 CCCCACCCCCTTGGATTC 59.310 66.667 0.00 0.00 39.24 2.52
2037 6002 1.593166 CCCCACCCCCTTGGATTCAT 61.593 60.000 0.00 0.00 39.24 2.57
2046 6011 1.410648 CCTTGGATTCATGGGGTGGAG 60.411 57.143 0.00 0.00 35.31 3.86
2066 6031 7.360691 GGTGGAGAGGTTAATTCGAAAGTTTAC 60.361 40.741 0.00 0.00 0.00 2.01
2080 6045 6.308766 TCGAAAGTTTACATAAAGTAGGACGC 59.691 38.462 0.00 0.00 33.43 5.19
2129 6220 1.134521 TGCACAATAGATCGGGTCACC 60.135 52.381 0.00 0.00 0.00 4.02
2149 6240 5.783360 TCACCAAACCTCTCCTAAACATCTA 59.217 40.000 0.00 0.00 0.00 1.98
2172 6263 2.036217 ACCACATTGTCCGAACGTTCTA 59.964 45.455 24.80 11.04 0.00 2.10
2202 6293 2.654912 CGCCGTGTCTCAAACGTCC 61.655 63.158 0.00 0.00 39.38 4.79
2232 6323 4.927425 CAGTTGCAAAGATGGGAAGATTTG 59.073 41.667 0.00 0.00 36.07 2.32
2273 6364 3.813724 TCATGTAGGAGTCCGATACTTCG 59.186 47.826 2.76 0.00 38.93 3.79
2287 6378 5.466432 GATACTTCGAACCTAGCCAAAAC 57.534 43.478 0.00 0.00 0.00 2.43
2289 6380 2.158726 ACTTCGAACCTAGCCAAAACCA 60.159 45.455 0.00 0.00 0.00 3.67
2331 6422 4.702831 GGACCATTCCACATTGTTTTTGT 58.297 39.130 0.00 0.00 42.30 2.83
2332 6423 4.511082 GGACCATTCCACATTGTTTTTGTG 59.489 41.667 0.00 0.00 42.30 3.33
2340 6431 5.641209 TCCACATTGTTTTTGTGTGAAAAGG 59.359 36.000 6.32 0.00 44.48 3.11
2343 6434 3.685139 TGTTTTTGTGTGAAAAGGCCA 57.315 38.095 5.01 0.00 0.00 5.36
2344 6435 4.008074 TGTTTTTGTGTGAAAAGGCCAA 57.992 36.364 5.01 0.00 0.00 4.52
2345 6436 4.583871 TGTTTTTGTGTGAAAAGGCCAAT 58.416 34.783 5.01 0.00 0.00 3.16
2346 6437 5.734720 TGTTTTTGTGTGAAAAGGCCAATA 58.265 33.333 5.01 0.00 0.00 1.90
2347 6438 5.582665 TGTTTTTGTGTGAAAAGGCCAATAC 59.417 36.000 5.01 0.00 0.00 1.89
2348 6439 3.634568 TTGTGTGAAAAGGCCAATACG 57.365 42.857 5.01 0.00 0.00 3.06
2349 6440 1.883275 TGTGTGAAAAGGCCAATACGG 59.117 47.619 5.01 0.00 38.11 4.02
2350 6441 1.883926 GTGTGAAAAGGCCAATACGGT 59.116 47.619 5.01 0.00 36.97 4.83
2351 6442 1.883275 TGTGAAAAGGCCAATACGGTG 59.117 47.619 5.01 0.00 36.97 4.94
2352 6443 2.156098 GTGAAAAGGCCAATACGGTGA 58.844 47.619 5.01 0.00 36.97 4.02
2353 6444 2.095415 GTGAAAAGGCCAATACGGTGAC 60.095 50.000 5.01 0.00 36.97 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.699038 GCCATGCATCTACCAAAACCTTA 59.301 43.478 0.00 0.00 0.00 2.69
84 86 9.871238 AGAACTTCGTATTAGCTAATGAAAGAA 57.129 29.630 25.99 21.16 0.00 2.52
85 87 9.871238 AAGAACTTCGTATTAGCTAATGAAAGA 57.129 29.630 25.99 16.61 0.00 2.52
86 88 9.907576 CAAGAACTTCGTATTAGCTAATGAAAG 57.092 33.333 25.99 23.95 0.00 2.62
87 89 8.879759 CCAAGAACTTCGTATTAGCTAATGAAA 58.120 33.333 25.99 16.15 0.00 2.69
146 156 3.882326 ATGGAGGATGGGGCTGCG 61.882 66.667 0.00 0.00 0.00 5.18
212 222 3.366679 CCAAAATGTCTTAGCAGTGCAGG 60.367 47.826 19.20 6.77 0.00 4.85
245 255 3.909662 ACGCCCAGTCAATCATGC 58.090 55.556 0.00 0.00 0.00 4.06
364 375 1.589196 GTCGACATAGCGGTCCAGC 60.589 63.158 11.55 0.00 34.24 4.85
385 396 2.290641 CCTTGAAACGTGGAACTTCAGG 59.709 50.000 0.00 0.00 33.38 3.86
428 439 9.066892 TGTAATAATCAGTGATTCTATTTGGGC 57.933 33.333 21.49 8.85 33.95 5.36
491 2766 6.036470 CGTACTACATGATGAAGTGTGACAT 58.964 40.000 0.00 0.00 0.00 3.06
499 2774 5.399013 TGTCACACGTACTACATGATGAAG 58.601 41.667 0.00 0.00 0.00 3.02
504 2779 3.924073 GCATTGTCACACGTACTACATGA 59.076 43.478 0.00 0.00 0.00 3.07
505 2780 3.677596 TGCATTGTCACACGTACTACATG 59.322 43.478 0.00 0.00 0.00 3.21
506 2781 3.920446 TGCATTGTCACACGTACTACAT 58.080 40.909 0.00 0.00 0.00 2.29
677 2999 9.783256 AAATAGTGCCGTACAAAGATTAAATTC 57.217 29.630 0.00 0.00 0.00 2.17
683 3005 7.448748 AGAAAAATAGTGCCGTACAAAGATT 57.551 32.000 0.00 0.00 0.00 2.40
692 3016 4.563061 ACTAACGAGAAAAATAGTGCCGT 58.437 39.130 0.00 0.00 0.00 5.68
694 3018 5.407387 TGTGACTAACGAGAAAAATAGTGCC 59.593 40.000 0.00 0.00 0.00 5.01
704 3028 5.161358 GTGATGTGATGTGACTAACGAGAA 58.839 41.667 0.00 0.00 0.00 2.87
706 3030 4.485163 TGTGATGTGATGTGACTAACGAG 58.515 43.478 0.00 0.00 0.00 4.18
729 3053 1.213013 GAGACCGATGCTGACGTGT 59.787 57.895 0.00 0.00 0.00 4.49
767 3091 4.435436 TGGACGCTTCGCTCGCAT 62.435 61.111 0.00 0.00 0.00 4.73
771 3095 3.876589 TTGGGTGGACGCTTCGCTC 62.877 63.158 0.00 0.00 0.00 5.03
773 3097 2.975799 TTTGGGTGGACGCTTCGC 60.976 61.111 0.00 0.00 0.00 4.70
775 3099 0.893727 ATGGTTTGGGTGGACGCTTC 60.894 55.000 0.00 0.00 0.00 3.86
780 3104 1.073923 AGTGAGATGGTTTGGGTGGAC 59.926 52.381 0.00 0.00 0.00 4.02
789 3324 2.900546 AGAAACCGAGAGTGAGATGGTT 59.099 45.455 0.00 0.00 44.44 3.67
802 3337 0.974383 GAAGGTGAGGGAGAAACCGA 59.026 55.000 0.00 0.00 39.07 4.69
803 3338 0.036294 GGAAGGTGAGGGAGAAACCG 60.036 60.000 0.00 0.00 39.07 4.44
804 3339 0.328592 GGGAAGGTGAGGGAGAAACC 59.671 60.000 0.00 0.00 38.08 3.27
805 3340 0.328592 GGGGAAGGTGAGGGAGAAAC 59.671 60.000 0.00 0.00 0.00 2.78
806 3341 0.196118 AGGGGAAGGTGAGGGAGAAA 59.804 55.000 0.00 0.00 0.00 2.52
841 3377 1.610102 CCGAGATGAAGGATCCATGGC 60.610 57.143 15.82 0.17 0.00 4.40
860 3396 4.223255 GCAGAGGGGGTTTATATAGAGACC 59.777 50.000 0.00 0.00 0.00 3.85
945 3481 2.869897 ACGAGAGTTCAAGAGCGAATC 58.130 47.619 0.00 0.00 46.40 2.52
951 3487 6.830114 AAAACAACTACGAGAGTTCAAGAG 57.170 37.500 4.78 0.00 45.81 2.85
966 3502 5.789521 ACAGCAAACCAACTAAAAACAACT 58.210 33.333 0.00 0.00 0.00 3.16
1527 4070 6.129975 CGCGAGCAACATTTTATTTCTATTCG 60.130 38.462 0.00 0.00 0.00 3.34
1606 4150 4.330074 CGAGTTATGAGCGTCCAAAAGAAT 59.670 41.667 0.00 0.00 0.00 2.40
1609 4153 2.348666 CCGAGTTATGAGCGTCCAAAAG 59.651 50.000 0.00 0.00 0.00 2.27
1644 4188 3.392616 ACATTCACATATGTCTCCCTCCC 59.607 47.826 5.07 0.00 33.58 4.30
1645 4189 4.696479 ACATTCACATATGTCTCCCTCC 57.304 45.455 5.07 0.00 33.58 4.30
1669 4213 0.309302 CACATGTCGACCCGCAAAAA 59.691 50.000 14.12 0.00 0.00 1.94
1670 4214 0.816018 ACACATGTCGACCCGCAAAA 60.816 50.000 14.12 0.00 0.00 2.44
1671 4215 0.816018 AACACATGTCGACCCGCAAA 60.816 50.000 14.12 0.00 0.00 3.68
1672 4216 0.033642 TAACACATGTCGACCCGCAA 59.966 50.000 14.12 0.00 0.00 4.85
1673 4217 0.033642 TTAACACATGTCGACCCGCA 59.966 50.000 14.12 0.00 0.00 5.69
1674 4218 1.062002 CATTAACACATGTCGACCCGC 59.938 52.381 14.12 0.00 0.00 6.13
1675 4219 2.343101 ACATTAACACATGTCGACCCG 58.657 47.619 14.12 6.43 31.26 5.28
1676 4220 4.214545 TGAAACATTAACACATGTCGACCC 59.785 41.667 14.12 0.00 36.30 4.46
1677 4221 5.351233 TGAAACATTAACACATGTCGACC 57.649 39.130 14.12 0.00 36.30 4.79
1678 4222 5.049680 ACCTGAAACATTAACACATGTCGAC 60.050 40.000 9.11 9.11 36.30 4.20
1679 4223 5.049749 CACCTGAAACATTAACACATGTCGA 60.050 40.000 0.00 0.00 36.30 4.20
1680 4224 5.146460 CACCTGAAACATTAACACATGTCG 58.854 41.667 0.00 0.00 36.30 4.35
1683 5642 4.236935 GCCACCTGAAACATTAACACATG 58.763 43.478 0.00 0.00 0.00 3.21
1686 5645 4.519540 ATGCCACCTGAAACATTAACAC 57.480 40.909 0.00 0.00 0.00 3.32
1690 5649 7.296628 ACTAAAAATGCCACCTGAAACATTA 57.703 32.000 0.00 0.00 32.63 1.90
1699 5658 5.511202 CCAATCACAACTAAAAATGCCACCT 60.511 40.000 0.00 0.00 0.00 4.00
1790 5749 3.125316 CGGGAGATGACAGTTTTAGTTGC 59.875 47.826 0.00 0.00 0.00 4.17
1840 5805 1.250840 AAAGGGATGGCAAGCGAACC 61.251 55.000 0.00 0.00 0.00 3.62
1847 5812 0.251742 CACTGGGAAAGGGATGGCAA 60.252 55.000 0.00 0.00 0.00 4.52
1853 5818 1.064825 GAGGTTCACTGGGAAAGGGA 58.935 55.000 0.00 0.00 36.14 4.20
1862 5827 2.808543 GTTACCAAGCTGAGGTTCACTG 59.191 50.000 15.53 0.00 40.54 3.66
1887 5852 9.687210 GGTAATCAAGTTTTTAAAAGAATCGGT 57.313 29.630 0.14 0.00 0.00 4.69
1980 5945 2.034558 CGTCCAACAAAAGAATGCCACT 59.965 45.455 0.00 0.00 0.00 4.00
2017 5982 3.679199 GAATCCAAGGGGGTGGGGC 62.679 68.421 0.00 0.00 39.34 5.80
2018 5983 1.593166 ATGAATCCAAGGGGGTGGGG 61.593 60.000 0.00 0.00 39.34 4.96
2026 5991 0.630673 TCCACCCCATGAATCCAAGG 59.369 55.000 0.00 0.00 0.00 3.61
2035 6000 3.555966 GAATTAACCTCTCCACCCCATG 58.444 50.000 0.00 0.00 0.00 3.66
2037 6002 1.557832 CGAATTAACCTCTCCACCCCA 59.442 52.381 0.00 0.00 0.00 4.96
2066 6031 5.794687 TTGAACATGCGTCCTACTTTATG 57.205 39.130 0.00 0.00 0.00 1.90
2080 6045 5.878332 TGTGCTACACCTATTTGAACATG 57.122 39.130 0.00 0.00 32.73 3.21
2129 6220 5.875359 GGTGTAGATGTTTAGGAGAGGTTTG 59.125 44.000 0.00 0.00 0.00 2.93
2149 6240 0.179067 ACGTTCGGACAATGTGGTGT 60.179 50.000 0.00 0.00 0.00 4.16
2172 6263 2.361104 ACGGCGTTGGATGGCAAT 60.361 55.556 6.77 0.00 0.00 3.56
2202 6293 3.125316 CCATCTTTGCAACTGGTTTGTG 58.875 45.455 0.00 0.00 37.54 3.33
2232 6323 4.554036 GGAGGACCAGATGCCCGC 62.554 72.222 0.00 0.00 35.97 6.13
2273 6364 1.272490 GCCTTGGTTTTGGCTAGGTTC 59.728 52.381 0.00 0.00 45.26 3.62
2329 6420 1.883275 CCGTATTGGCCTTTTCACACA 59.117 47.619 3.32 0.00 0.00 3.72
2331 6422 1.883275 CACCGTATTGGCCTTTTCACA 59.117 47.619 3.32 0.00 43.94 3.58
2332 6423 2.095415 GTCACCGTATTGGCCTTTTCAC 60.095 50.000 3.32 0.00 43.94 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.