AutoCloner

Multiple sequence alignment - TraesCS1D01G187400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G187400	chr1D	100.000	5795	0	0	1001	6795	258588351	258582557	0.000000e+00	10702.0
1	TraesCS1D01G187400	chr1D	100.000	656	0	0	1	656	258589351	258588696	0.000000e+00	1212.0
2	TraesCS1D01G187400	chr1D	100.000	30	0	0	5851	5880	258583472	258583501	1.000000e-03	56.5
3	TraesCS1D01G187400	chr1A	97.269	2819	39	7	1867	4671	342380895	342383689	0.000000e+00	4745.0
4	TraesCS1D01G187400	chr1A	94.334	1906	53	13	4670	6524	342383748	342385649	0.000000e+00	2870.0
5	TraesCS1D01G187400	chr1A	94.959	853	24	7	1018	1857	342379860	342380706	0.000000e+00	1319.0
6	TraesCS1D01G187400	chr1A	89.209	556	41	10	118	655	342379112	342379666	0.000000e+00	676.0
7	TraesCS1D01G187400	chr1A	93.478	230	7	5	6566	6795	342386242	342386463	1.090000e-87	335.0
8	TraesCS1D01G187400	chr1A	89.286	112	11	1	1	111	342378784	342378895	9.190000e-29	139.0
9	TraesCS1D01G187400	chr1A	100.000	48	0	0	6522	6569	342385922	342385969	9.390000e-14	89.8
10	TraesCS1D01G187400	chr1B	95.438	2148	72	9	1867	3999	354222896	354225032	0.000000e+00	3400.0
11	TraesCS1D01G187400	chr1B	89.624	1648	76	26	5191	6795	354225852	354227447	0.000000e+00	2008.0
12	TraesCS1D01G187400	chr1B	92.958	852	45	4	1018	1857	354221797	354222645	0.000000e+00	1227.0
13	TraesCS1D01G187400	chr1B	91.142	779	42	9	3995	4768	354225090	354225846	0.000000e+00	1031.0
14	TraesCS1D01G187400	chr1B	90.186	377	31	5	1	372	354220907	354221282	2.850000e-133	486.0
15	TraesCS1D01G187400	chr1B	93.939	297	14	2	362	655	354221307	354221602	4.830000e-121	446.0
16	TraesCS1D01G187400	chr1B	96.970	33	1	0	4670	4702	341747892	341747860	1.000000e-03	56.5
17	TraesCS1D01G187400	chr1B	100.000	28	0	0	1001	1028	354221768	354221795	1.200000e-02	52.8
18	TraesCS1D01G187400	chr7B	85.072	690	78	13	3995	4666	547966294	547965612	0.000000e+00	680.0
19	TraesCS1D01G187400	chr7B	87.129	101	7	1	5733	5827	547965104	547965004	7.200000e-20	110.0
20	TraesCS1D01G187400	chr7B	83.333	90	13	2	4681	4768	547965535	547965446	1.570000e-11	82.4
21	TraesCS1D01G187400	chr7B	92.683	41	1	2	4670	4708	476201188	476201228	2.650000e-04	58.4
22	TraesCS1D01G187400	chr2D	93.182	440	26	3	4765	5200	545513082	545512643	1.600000e-180	643.0
23	TraesCS1D01G187400	chr7A	85.938	384	47	5	2315	2696	386392593	386392971	2.950000e-108	403.0
24	TraesCS1D01G187400	chr7A	86.957	138	14	3	2691	2827	386427489	386427623	1.180000e-32	152.0
25	TraesCS1D01G187400	chr7A	86.232	138	15	3	2691	2827	386500633	386500767	5.490000e-31	147.0
26	TraesCS1D01G187400	chr7A	92.105	38	2	1	4664	4700	43512059	43512096	1.200000e-02	52.8
27	TraesCS1D01G187400	chr7D	85.338	266	23	7	2873	3122	121681640	121681375	1.880000e-65	261.0
28	TraesCS1D01G187400	chr7D	89.313	131	11	1	5258	5385	121672301	121672171	1.960000e-35	161.0
29	TraesCS1D01G187400	chr7D	84.874	119	11	3	5733	5845	121671415	121671298	5.570000e-21	113.0
30	TraesCS1D01G187400	chr2B	77.966	236	26	12	4095	4321	23309564	23309782	2.570000e-24	124.0
31	TraesCS1D01G187400	chr2B	89.011	91	10	0	5703	5793	23312985	23313075	5.570000e-21	113.0
32	TraesCS1D01G187400	chr2B	85.849	106	13	2	4559	4664	23312292	23312395	2.000000e-20	111.0
33	TraesCS1D01G187400	chr2B	100.000	32	0	0	4668	4699	744156229	744156260	7.360000e-05	60.2
34	TraesCS1D01G187400	chr4D	97.059	34	1	0	4670	4703	394487369	394487402	2.650000e-04	58.4
35	TraesCS1D01G187400	chr3D	100.000	30	0	0	4670	4699	313101877	313101906	1.000000e-03	56.5
36	TraesCS1D01G187400	chr3D	100.000	30	0	0	4670	4699	459472501	459472530	1.000000e-03	56.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G187400	chr1D	258582557	258589351	6794	True	5957.000000	10702	100.000000	1	6795	2	chr1D.!!$R1	6794
1	TraesCS1D01G187400	chr1A	342378784	342386463	7679	False	1453.400000	4745	94.076429	1	6795	7	chr1A.!!$F1	6794
2	TraesCS1D01G187400	chr1B	354220907	354227447	6540	False	1235.828571	3400	93.326714	1	6795	7	chr1B.!!$F1	6794
3	TraesCS1D01G187400	chr7B	547965004	547966294	1290	True	290.800000	680	85.178000	3995	5827	3	chr7B.!!$R1	1832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
306	523	0.471022	AGTTTGGCCCCCAACGAAAT	60.471	50.000	0.00	0.00	43.82	2.17	F
310	527	0.968393	TGGCCCCCAACGAAATTAGC	60.968	55.000	0.00	0.00	0.00	3.09	F
1322	1600	1.327764	CGCGATTTTCCTAGTCTTGCC	59.672	52.381	0.00	0.00	0.00	4.52	F
1808	2107	4.854399	TCATTGGTCATTCACACGAAAAC	58.146	39.130	0.00	0.00	34.01	2.43	F
1817	2116	4.868450	TTCACACGAAAACAGTTACCTG	57.132	40.909	0.00	0.00	44.68	4.00	F
2860	3427	2.966309	GCCGTCTTTCGCCCTTGTG	61.966	63.158	0.00	0.00	38.35	3.33	F
4581	5232	0.961857	TCACCAAATCTGCGCTGCAT	60.962	50.000	9.73	1.06	38.13	3.96	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1693	1984	0.615331	TGGCCTGAACTCCTAGCTTG	59.385	55.000	3.32	0.00	0.00	4.01	R
1694	1985	0.908198	CTGGCCTGAACTCCTAGCTT	59.092	55.000	3.32	0.00	0.00	3.74	R
2374	2933	0.036306	CAACGGTAACCCCTTCAGCT	59.964	55.000	0.00	0.00	0.00	4.24	R
2718	3285	2.917713	TACTGGGCCATCCAATGTTT	57.082	45.000	6.72	0.00	46.51	2.83	R
3123	3690	3.244078	TGGCAACACGATAAACTGTCTCT	60.244	43.478	0.00	0.00	46.17	3.10	R
4832	5563	0.459489	TGACCAGGCAGCAAAACAAC	59.541	50.000	0.00	0.00	0.00	3.32	R
6453	7255	0.027586	AAGCGACTTCACAACGTTGC	59.972	50.000	27.61	11.38	40.13	4.17	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
40	41	6.835488	TCACTTATCGTACATTAACCTACCCT	59.165	38.462	0.00	0.00	0.00	4.34
41	42	7.998383	TCACTTATCGTACATTAACCTACCCTA	59.002	37.037	0.00	0.00	0.00	3.53
42	43	8.295288	CACTTATCGTACATTAACCTACCCTAG	58.705	40.741	0.00	0.00	0.00	3.02
197	409	2.360350	CCACAATCTGCGTGCCCT	60.360	61.111	0.00	0.00	32.85	5.19
198	410	1.078497	CCACAATCTGCGTGCCCTA	60.078	57.895	0.00	0.00	32.85	3.53
269	484	7.061441	GTGTTCACAGCTAATGATCAACATTTG	59.939	37.037	0.00	0.00	45.60	2.32
306	523	0.471022	AGTTTGGCCCCCAACGAAAT	60.471	50.000	0.00	0.00	43.82	2.17
310	527	0.968393	TGGCCCCCAACGAAATTAGC	60.968	55.000	0.00	0.00	0.00	3.09
335	552	7.385205	GCGAGGTTATCAATCTCATTAGCTTTA	59.615	37.037	0.00	0.00	0.00	1.85
433	688	9.831054	CGCAAACATAAACATAAAAACGTAAAA	57.169	25.926	0.00	0.00	0.00	1.52
652	913	2.533266	CGGAGGAGAGAGAGAGAGAG	57.467	60.000	0.00	0.00	0.00	3.20
653	914	2.039418	CGGAGGAGAGAGAGAGAGAGA	58.961	57.143	0.00	0.00	0.00	3.10
655	916	3.309296	GGAGGAGAGAGAGAGAGAGAGA	58.691	54.545	0.00	0.00	0.00	3.10
1322	1600	1.327764	CGCGATTTTCCTAGTCTTGCC	59.672	52.381	0.00	0.00	0.00	4.52
1500	1778	6.612247	TTCATTCTGCTTTTCTTTGACGTA	57.388	33.333	0.00	0.00	0.00	3.57
1577	1858	7.755582	AAATGTTTATTTCCGAATAAGCAGC	57.244	32.000	11.93	0.00	45.69	5.25
1801	2100	4.886489	TGTTCACTTCATTGGTCATTCACA	59.114	37.500	0.00	0.00	0.00	3.58
1808	2107	4.854399	TCATTGGTCATTCACACGAAAAC	58.146	39.130	0.00	0.00	34.01	2.43
1817	2116	4.868450	TTCACACGAAAACAGTTACCTG	57.132	40.909	0.00	0.00	44.68	4.00
1862	2161	8.107095	TGGCTTACCATATAACTATTGATTCCC	58.893	37.037	0.00	0.00	42.67	3.97
1865	2164	9.367444	CTTACCATATAACTATTGATTCCCGAC	57.633	37.037	0.00	0.00	0.00	4.79
1947	2493	9.941664	CATCGTTGCAAGATCTATTAATTTCTT	57.058	29.630	0.00	0.00	0.00	2.52
2374	2933	6.070251	TGTGATGGCTTTTCTGACTATAGGAA	60.070	38.462	4.43	0.00	0.00	3.36
2718	3285	8.726988	GTTTGTACTACTGCATTTATTCCTCAA	58.273	33.333	0.00	0.00	0.00	3.02
2860	3427	2.966309	GCCGTCTTTCGCCCTTGTG	61.966	63.158	0.00	0.00	38.35	3.33
3123	3690	9.653287	CTAAACCTTGTACTTGAATATGTCTCA	57.347	33.333	0.00	0.00	0.00	3.27
3391	3961	8.779354	AATCTGTTGGTAAGTTCATTAGACTC	57.221	34.615	0.00	0.00	0.00	3.36
3652	4222	9.730420	GTCTTGTGTTTTTACATGTATTTGACT	57.270	29.630	6.36	0.00	0.00	3.41
3890	4460	5.948992	AGTTATGCTTCCTTGAACAAGAC	57.051	39.130	14.99	3.99	40.79	3.01
3910	4480	3.744660	ACCACTTGATTTCTGAGGACAC	58.255	45.455	0.00	0.00	0.00	3.67
3911	4481	3.136443	ACCACTTGATTTCTGAGGACACA	59.864	43.478	0.00	0.00	0.00	3.72
3915	4485	6.600822	CCACTTGATTTCTGAGGACACATAAT	59.399	38.462	0.00	0.00	0.00	1.28
4581	5232	0.961857	TCACCAAATCTGCGCTGCAT	60.962	50.000	9.73	1.06	38.13	3.96
4738	5451	7.719871	AGTATGGTTGCTTCTAAGAAGAGTA	57.280	36.000	1.70	0.00	31.96	2.59
4816	5547	2.404789	CAATAGCGTTGCCTGGCG	59.595	61.111	14.98	0.37	0.00	5.69
4832	5563	0.240945	GGCGTGGACACATTTTCTGG	59.759	55.000	3.12	0.00	0.00	3.86
4883	5614	0.320073	TGAGAGGCGTTTGGTTACCG	60.320	55.000	0.00	0.00	0.00	4.02
4949	5680	1.732259	GCCCATGTACGAAGAACAGTG	59.268	52.381	0.00	0.00	0.00	3.66
4953	5684	4.082408	CCCATGTACGAAGAACAGTGTCTA	60.082	45.833	0.00	0.00	0.00	2.59
5021	5752	1.679032	GCTCCAATTCTTACGCCTGGT	60.679	52.381	0.00	0.00	0.00	4.00
5053	5784	1.079543	CTCCCTGGCTTCACTGTCG	60.080	63.158	0.00	0.00	0.00	4.35
5084	5815	3.312718	GCATGCAAACCCAGGCCA	61.313	61.111	14.21	0.00	36.59	5.36
5106	5837	2.421619	GCTATACCTGGCATCTTGAGC	58.578	52.381	0.00	0.00	0.00	4.26
5185	5916	1.388065	CCCAGGACGCAAACCAAACA	61.388	55.000	0.00	0.00	0.00	2.83
5359	6101	3.627577	CACCATTATTCAACTTCTCGGGG	59.372	47.826	0.00	0.00	0.00	5.73
5526	6289	2.283298	CACCGGATCATTCCTGAACAG	58.717	52.381	9.46	0.00	40.17	3.16
5544	6309	4.799564	ACAGATGAGGAAGTGAAGAGAC	57.200	45.455	0.00	0.00	0.00	3.36
5623	6388	1.606480	CCGCGAGCATATCCATGTCTT	60.606	52.381	8.23	0.00	34.40	3.01
5833	6609	5.124936	TCTCAGTGAAGCATGAAAATGATGG	59.875	40.000	0.00	0.00	0.00	3.51
5841	6617	3.366273	GCATGAAAATGATGGTGTCACGT	60.366	43.478	0.00	0.00	40.28	4.49
5862	6638	5.404366	ACGTTTCGTATTGATATGGGATTCG	59.596	40.000	0.00	0.00	38.73	3.34
5897	6673	1.825191	CCGAGGCATTCATGGTGGG	60.825	63.158	0.00	0.00	0.00	4.61
6065	6847	4.283212	TCCATTTAAAACAAAGAGCCTGGG	59.717	41.667	0.00	0.00	0.00	4.45
6131	6922	0.733150	GTTTATCTGGCCAACCGAGC	59.267	55.000	7.01	0.00	39.70	5.03
6210	7007	2.135933	CTCAACGAAACCTCACCAGAC	58.864	52.381	0.00	0.00	0.00	3.51
6356	7158	6.318900	GGACAAATATCCCGTGAAAGATTCTT	59.681	38.462	0.00	0.00	31.94	2.52
6438	7240	3.323243	ACATCGTACAAACACAGCCTAC	58.677	45.455	0.00	0.00	0.00	3.18
6440	7242	1.065358	CGTACAAACACAGCCTACCG	58.935	55.000	0.00	0.00	0.00	4.02
6453	7255	1.000496	GCCTACCGATTCTTCTACCGG	60.000	57.143	0.00	0.00	46.65	5.28

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
40	41	2.496070	AGGTCGCATAACTGTTCAGCTA	59.504	45.455	13.04	2.52	0.00	3.32
41	42	1.276421	AGGTCGCATAACTGTTCAGCT	59.724	47.619	13.04	0.00	0.00	4.24
42	43	1.661112	GAGGTCGCATAACTGTTCAGC	59.339	52.381	0.00	1.56	0.00	4.26
197	409	0.396001	ATGTGGCAGGCATGTGCATA	60.396	50.000	10.16	0.00	45.93	3.14
198	410	0.396001	TATGTGGCAGGCATGTGCAT	60.396	50.000	10.16	1.27	45.93	3.96
269	484	7.062956	GGCCAAACTAGTATTTTATTTGTGTGC	59.937	37.037	0.00	0.00	0.00	4.57
288	505	0.394938	AATTTCGTTGGGGGCCAAAC	59.605	50.000	4.39	8.63	45.73	2.93
306	523	6.868864	GCTAATGAGATTGATAACCTCGCTAA	59.131	38.462	0.00	0.00	0.00	3.09
310	527	7.721286	AAAGCTAATGAGATTGATAACCTCG	57.279	36.000	0.00	0.00	29.80	4.63
384	639	7.768582	TGCGTCTTCCTATAATCTTTCAATCAA	59.231	33.333	0.00	0.00	0.00	2.57
385	640	7.272244	TGCGTCTTCCTATAATCTTTCAATCA	58.728	34.615	0.00	0.00	0.00	2.57
1322	1600	3.190849	CACGATGGTGCTGCTCGG	61.191	66.667	12.59	0.17	37.35	4.63
1332	1610	1.130373	CCAACGAATGAACCACGATGG	59.870	52.381	0.00	0.00	45.02	3.51
1575	1856	4.821805	CCTATAAAATGGATGAACCGTGCT	59.178	41.667	0.00	0.00	42.61	4.40
1576	1857	4.578928	ACCTATAAAATGGATGAACCGTGC	59.421	41.667	0.00	0.00	42.61	5.34
1577	1858	6.317642	TGAACCTATAAAATGGATGAACCGTG	59.682	38.462	0.00	0.00	42.61	4.94
1693	1984	0.615331	TGGCCTGAACTCCTAGCTTG	59.385	55.000	3.32	0.00	0.00	4.01
1694	1985	0.908198	CTGGCCTGAACTCCTAGCTT	59.092	55.000	3.32	0.00	0.00	3.74
1817	2116	1.067516	CAATTCCCGGTCAATCCATGC	59.932	52.381	0.00	0.00	35.57	4.06
1857	2156	3.282021	CATCCATCAAACTGTCGGGAAT	58.718	45.455	0.00	0.00	0.00	3.01
1858	2157	2.710377	CATCCATCAAACTGTCGGGAA	58.290	47.619	0.00	0.00	0.00	3.97
1859	2158	1.678728	GCATCCATCAAACTGTCGGGA	60.679	52.381	0.00	0.00	0.00	5.14
1861	2160	1.399440	CTGCATCCATCAAACTGTCGG	59.601	52.381	0.00	0.00	0.00	4.79
1862	2161	2.079158	ACTGCATCCATCAAACTGTCG	58.921	47.619	0.00	0.00	0.00	4.35
1865	2164	4.247267	ACAAACTGCATCCATCAAACTG	57.753	40.909	0.00	0.00	0.00	3.16
1947	2493	5.927819	AGGAAACTTCAATTTGGCAATCAA	58.072	33.333	0.00	0.00	37.44	2.57
2374	2933	0.036306	CAACGGTAACCCCTTCAGCT	59.964	55.000	0.00	0.00	0.00	4.24
2553	3112	1.270907	ACTCTCAGTCCATGGACCAC	58.729	55.000	36.09	16.96	45.59	4.16
2718	3285	2.917713	TACTGGGCCATCCAATGTTT	57.082	45.000	6.72	0.00	46.51	2.83
2753	3320	5.751586	AGACCTTCTGTAAAACAGTTGGAA	58.248	37.500	19.63	4.53	46.03	3.53
2860	3427	9.640963	ATTCACTAACAGAAACTGTAGTGATAC	57.359	33.333	25.17	0.00	44.62	2.24
3123	3690	3.244078	TGGCAACACGATAAACTGTCTCT	60.244	43.478	0.00	0.00	46.17	3.10
3238	3805	7.700656	CACCGAAAGTAACTGTTTGAAAGAATT	59.299	33.333	0.00	0.00	0.00	2.17
3503	4073	5.778161	TGCAGTAAGTTGATCATTACGTG	57.222	39.130	11.67	11.21	37.06	4.49
3652	4222	5.163237	GGGACCTAAAATAGAGCCATGTACA	60.163	44.000	0.00	0.00	0.00	2.90
3890	4460	3.743521	TGTGTCCTCAGAAATCAAGTGG	58.256	45.455	0.00	0.00	0.00	4.00
4020	4654	7.076842	TCTGCATAATTTAACAGAGCTTGAC	57.923	36.000	7.91	0.00	34.35	3.18
4581	5232	9.342308	CCAAGGATAAAATCATTCTTACAGCTA	57.658	33.333	0.00	0.00	29.75	3.32
4713	5426	7.719871	ACTCTTCTTAGAAGCAACCATACTA	57.280	36.000	16.49	0.00	0.00	1.82
4738	5451	2.165167	CAGATGCCAGGACAACACAAT	58.835	47.619	0.00	0.00	0.00	2.71
4816	5547	4.385358	AACAACCAGAAAATGTGTCCAC	57.615	40.909	0.00	0.00	0.00	4.02
4832	5563	0.459489	TGACCAGGCAGCAAAACAAC	59.541	50.000	0.00	0.00	0.00	3.32
4883	5614	1.149401	GAACTATCCAGGCCAGGGC	59.851	63.158	15.24	4.33	41.06	5.19
4953	5684	9.147732	CCTGGGCTCCTTTAATTCTTTAATTAT	57.852	33.333	0.00	0.00	37.40	1.28
5021	5752	2.426414	CCAGGGAGATAGTTAGCCTGGA	60.426	54.545	1.79	0.00	44.05	3.86
5053	5784	2.019249	TGCATGCAAGTGATTAGCCTC	58.981	47.619	20.30	0.00	0.00	4.70
5106	5837	4.202010	CCTGTAAGTTGTTTGGTTCAGGTG	60.202	45.833	0.00	0.00	37.16	4.00
5359	6101	9.953565	TCTATGTATGGTTATTATTTACCAGCC	57.046	33.333	0.00	0.00	46.82	4.85
5526	6289	2.737039	GCCGTCTCTTCACTTCCTCATC	60.737	54.545	0.00	0.00	0.00	2.92
5623	6388	2.567169	ACTCCAGATCAAATCCACGACA	59.433	45.455	0.00	0.00	0.00	4.35
5833	6609	5.276678	CCCATATCAATACGAAACGTGACAC	60.277	44.000	7.05	0.00	41.39	3.67
5841	6617	8.615878	AATTCGAATCCCATATCAATACGAAA	57.384	30.769	11.83	0.00	39.77	3.46
5862	6638	4.184629	CCTCGGATATGGGATTCGAATTC	58.815	47.826	12.81	10.36	0.00	2.17
5924	6700	1.732259	GATGGTCGAAAACGCATCTGT	59.268	47.619	0.00	0.00	34.92	3.41
5983	6762	6.037098	GTGATCTGTAGTACTTCGATTGCTT	58.963	40.000	0.00	0.00	0.00	3.91
5984	6763	5.450688	GGTGATCTGTAGTACTTCGATTGCT	60.451	44.000	0.00	0.00	0.00	3.91
6210	7007	2.050895	CGTCCTCGGCTATCTGCG	60.051	66.667	0.00	0.00	44.05	5.18
6438	7240	1.287425	GTTGCCGGTAGAAGAATCGG	58.713	55.000	1.90	0.00	44.70	4.18
6440	7242	2.005971	ACGTTGCCGGTAGAAGAATC	57.994	50.000	1.90	0.00	38.78	2.52
6453	7255	0.027586	AAGCGACTTCACAACGTTGC	59.972	50.000	27.61	11.38	40.13	4.17
6619	7980	2.271800	CTATTGAACAGGTCGCAGTCC	58.728	52.381	0.00	0.00	35.48	3.85
6641	8002	3.935818	AGCTCTACTGCTCTAGGTGTA	57.064	47.619	0.00	0.00	39.34	2.90
6647	8008	8.379331	TGATTTATCTCTAGCTCTACTGCTCTA	58.621	37.037	0.00	0.00	42.97	2.43
6648	8009	7.174946	GTGATTTATCTCTAGCTCTACTGCTCT	59.825	40.741	0.00	0.00	42.97	4.09
6649	8010	7.040755	TGTGATTTATCTCTAGCTCTACTGCTC	60.041	40.741	0.00	0.00	42.97	4.26
6650	8011	6.775142	TGTGATTTATCTCTAGCTCTACTGCT	59.225	38.462	0.00	0.00	46.11	4.24
6651	8012	6.976088	TGTGATTTATCTCTAGCTCTACTGC	58.024	40.000	0.00	0.00	0.00	4.40
6652	8013	9.409312	CAATGTGATTTATCTCTAGCTCTACTG	57.591	37.037	0.00	0.00	0.00	2.74
6653	8014	8.584157	CCAATGTGATTTATCTCTAGCTCTACT	58.416	37.037	0.00	0.00	0.00	2.57
6654	8015	7.816995	CCCAATGTGATTTATCTCTAGCTCTAC	59.183	40.741	0.00	0.00	0.00	2.59

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.