Multiple sequence alignment - TraesCS1D01G187100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G187100 chr1D 100.000 3199 0 0 1 3199 258552219 258555417 0.000000e+00 5908.0
1 TraesCS1D01G187100 chr1D 77.667 403 76 9 1441 1839 258576322 258576714 1.920000e-57 233.0
2 TraesCS1D01G187100 chr1D 87.838 74 5 3 2883 2955 474280112 474280042 2.040000e-12 84.2
3 TraesCS1D01G187100 chr1B 91.293 3032 154 41 4 2976 354241684 354238704 0.000000e+00 4036.0
4 TraesCS1D01G187100 chr1B 83.333 198 31 2 1441 1637 354234599 354234403 7.050000e-42 182.0
5 TraesCS1D01G187100 chr1B 91.837 49 1 3 2975 3023 501067130 501067175 7.410000e-07 65.8
6 TraesCS1D01G187100 chr1A 91.927 2341 101 29 646 2917 342435444 342433123 0.000000e+00 3195.0
7 TraesCS1D01G187100 chr1A 85.321 654 70 11 6 637 342436861 342436212 0.000000e+00 652.0
8 TraesCS1D01G187100 chr1A 78.055 401 78 8 1441 1839 342392828 342392436 8.860000e-61 244.0
9 TraesCS1D01G187100 chr3B 97.251 291 8 0 1778 2068 612295120 612294830 7.970000e-136 494.0
10 TraesCS1D01G187100 chr3B 96.045 177 6 1 1893 2068 51953127 51952951 1.450000e-73 287.0
11 TraesCS1D01G187100 chr3B 95.679 162 6 1 1622 1783 51953273 51953113 3.170000e-65 259.0
12 TraesCS1D01G187100 chr3B 95.588 68 2 1 1667 1733 612295182 612295115 1.210000e-19 108.0
13 TraesCS1D01G187100 chr2B 95.652 276 12 0 1793 2068 672340153 672340428 8.140000e-121 444.0
14 TraesCS1D01G187100 chr2B 96.522 115 4 0 1617 1731 672340040 672340154 1.170000e-44 191.0
15 TraesCS1D01G187100 chr2B 98.113 106 2 0 1963 2068 107119095 107119200 5.450000e-43 185.0
16 TraesCS1D01G187100 chr2B 96.429 56 1 1 1728 1783 107119026 107119080 1.220000e-14 91.6
17 TraesCS1D01G187100 chr2B 89.333 75 3 4 2881 2953 212058900 212058971 4.400000e-14 89.8
18 TraesCS1D01G187100 chr2B 97.143 35 1 0 2884 2918 563942890 563942856 3.450000e-05 60.2
19 TraesCS1D01G187100 chr4A 96.610 177 5 1 1893 2068 712882367 712882191 3.120000e-75 292.0
20 TraesCS1D01G187100 chr4A 93.413 167 10 1 1617 1783 712882518 712882353 2.460000e-61 246.0
21 TraesCS1D01G187100 chr4B 94.915 177 8 1 1893 2068 139108482 139108658 3.140000e-70 276.0
22 TraesCS1D01G187100 chr4B 94.611 167 8 1 1617 1783 139108331 139108496 1.140000e-64 257.0
23 TraesCS1D01G187100 chr4B 80.709 254 39 7 1069 1314 647637951 647637700 4.210000e-44 189.0
24 TraesCS1D01G187100 chr4B 80.000 180 34 2 1121 1299 647639525 647639347 7.200000e-27 132.0
25 TraesCS1D01G187100 chr5A 80.709 254 39 7 1069 1314 687269167 687268916 4.210000e-44 189.0
26 TraesCS1D01G187100 chr5A 86.420 81 6 4 2883 2961 608627263 608627186 2.040000e-12 84.2
27 TraesCS1D01G187100 chr5A 91.837 49 3 1 2973 3021 106149957 106150004 2.060000e-07 67.6
28 TraesCS1D01G187100 chr4D 80.800 250 41 5 1069 1313 502749879 502749632 4.210000e-44 189.0
29 TraesCS1D01G187100 chr4D 80.663 181 31 4 1121 1299 502751469 502751291 1.550000e-28 137.0
30 TraesCS1D01G187100 chr4D 89.394 66 3 4 2974 3038 383758004 383758066 2.650000e-11 80.5
31 TraesCS1D01G187100 chr4D 84.722 72 6 5 2974 3043 361259480 361259412 2.060000e-07 67.6
32 TraesCS1D01G187100 chr7D 89.189 74 4 3 2883 2955 585490076 585490146 4.400000e-14 89.8
33 TraesCS1D01G187100 chr2A 90.909 66 2 3 2975 3038 668777524 668777461 5.690000e-13 86.1
34 TraesCS1D01G187100 chr3D 87.302 63 8 0 2824 2886 553567092 553567154 4.430000e-09 73.1
35 TraesCS1D01G187100 chr3A 92.000 50 3 1 2972 3021 420443139 420443091 5.730000e-08 69.4
36 TraesCS1D01G187100 chr3A 93.617 47 0 3 2975 3021 523153052 523153095 2.060000e-07 67.6
37 TraesCS1D01G187100 chr2D 91.837 49 1 3 2973 3021 567788409 567788454 7.410000e-07 65.8
38 TraesCS1D01G187100 chr2D 86.667 60 4 4 2969 3027 48295148 48295092 2.660000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G187100 chr1D 258552219 258555417 3198 False 5908.0 5908 100.000 1 3199 1 chr1D.!!$F1 3198
1 TraesCS1D01G187100 chr1B 354238704 354241684 2980 True 4036.0 4036 91.293 4 2976 1 chr1B.!!$R2 2972
2 TraesCS1D01G187100 chr1A 342433123 342436861 3738 True 1923.5 3195 88.624 6 2917 2 chr1A.!!$R2 2911

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
405 408 0.029681 ATAGGCCCTGGTGATGGAGT 60.030 55.0 0.0 0.0 0.00 3.85 F
415 418 0.461961 GTGATGGAGTCGAAGAGGGG 59.538 60.0 0.0 0.0 36.95 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1569 2394 0.872881 CCGACGACGTGGAACTTGTT 60.873 55.000 11.89 0.0 37.88 2.83 R
2288 3121 2.154462 ACATACTGTCCTGCACTTTGC 58.846 47.619 0.00 0.0 45.29 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
252 253 4.828296 GGAGGGACCTACCGGCGA 62.828 72.222 9.30 0.00 40.11 5.54
306 307 0.834612 TGACACGAGGTCCCTGTTTT 59.165 50.000 8.97 0.00 46.38 2.43
348 351 3.560278 CGTAACGTGGATGCGGCC 61.560 66.667 0.00 0.00 35.98 6.13
367 370 1.554160 CCAGCCTTCTCTGTGTCTGAT 59.446 52.381 0.00 0.00 32.32 2.90
380 383 0.242825 GTCTGATGGGACGACGAACA 59.757 55.000 0.00 0.00 0.00 3.18
393 396 2.900528 CGAACATCGTGATAGGCCC 58.099 57.895 0.00 0.00 34.72 5.80
405 408 0.029681 ATAGGCCCTGGTGATGGAGT 60.030 55.000 0.00 0.00 0.00 3.85
415 418 0.461961 GTGATGGAGTCGAAGAGGGG 59.538 60.000 0.00 0.00 36.95 4.79
416 419 0.687757 TGATGGAGTCGAAGAGGGGG 60.688 60.000 0.00 0.00 36.95 5.40
441 444 3.069443 GGGGCTCAACACAAAAAGAATGA 59.931 43.478 0.00 0.00 0.00 2.57
448 451 5.984926 TCAACACAAAAAGAATGAGGATTGC 59.015 36.000 0.00 0.00 0.00 3.56
509 528 2.251642 GGCGAAGTGGCGAACAACT 61.252 57.895 0.00 0.00 0.00 3.16
510 529 1.082756 GCGAAGTGGCGAACAACTG 60.083 57.895 0.00 0.00 0.00 3.16
606 628 4.794439 GGCGTTTTGATGGCCGGC 62.794 66.667 21.18 21.18 37.06 6.13
622 651 2.361104 GCGTTTGAGATGCCCCCA 60.361 61.111 0.00 0.00 34.03 4.96
624 653 2.398554 CGTTTGAGATGCCCCCACG 61.399 63.158 0.00 0.00 0.00 4.94
637 666 3.367743 CCACGCATTGGCACTGCT 61.368 61.111 24.55 11.16 39.07 4.24
638 667 2.126618 CACGCATTGGCACTGCTG 60.127 61.111 24.55 19.75 41.24 4.41
640 669 4.789075 CGCATTGGCACTGCTGGC 62.789 66.667 24.55 1.83 43.44 4.85
648 1436 3.951769 GCACTGCTGGCAGGGGATT 62.952 63.158 23.67 2.23 46.84 3.01
775 1563 1.302832 GCTCACCTCACCAACCAGG 60.303 63.158 0.00 0.00 45.67 4.45
779 1567 3.636231 CCTCACCAACCAGGCCGA 61.636 66.667 0.00 0.00 43.14 5.54
867 1655 4.448640 GGCCAATATATAAACACCCACCCT 60.449 45.833 0.00 0.00 0.00 4.34
869 1657 5.457633 GCCAATATATAAACACCCACCCTCT 60.458 44.000 0.00 0.00 0.00 3.69
874 1662 2.640581 AAACACCCACCCTCTGTGCC 62.641 60.000 0.00 0.00 44.01 5.01
891 1679 2.125512 CTGCTCGCCACCTACCAC 60.126 66.667 0.00 0.00 0.00 4.16
924 1727 3.788766 CGTAGCACAGCGCCAACC 61.789 66.667 2.29 0.00 44.04 3.77
925 1728 2.668212 GTAGCACAGCGCCAACCA 60.668 61.111 2.29 0.00 44.04 3.67
926 1729 2.358615 TAGCACAGCGCCAACCAG 60.359 61.111 2.29 0.00 44.04 4.00
929 1732 4.332637 CACAGCGCCAACCAGCAC 62.333 66.667 2.29 0.00 35.48 4.40
1316 2136 1.511305 CATCGCCGGTCAGTACTGT 59.489 57.895 21.99 0.00 0.00 3.55
1374 2199 4.491676 GACCGGCGAGCTCATTATAATAA 58.508 43.478 15.40 0.00 0.00 1.40
1859 2684 0.104882 TCAACACCACCTACCTCCCA 60.105 55.000 0.00 0.00 0.00 4.37
2129 2954 0.541063 TCAACTACCACGAGCTCCCA 60.541 55.000 8.47 0.00 0.00 4.37
2219 3050 4.020573 TGATCGACCAATACCAGACAAGTT 60.021 41.667 0.00 0.00 0.00 2.66
2220 3051 5.186215 TGATCGACCAATACCAGACAAGTTA 59.814 40.000 0.00 0.00 0.00 2.24
2221 3052 5.068234 TCGACCAATACCAGACAAGTTAG 57.932 43.478 0.00 0.00 0.00 2.34
2222 3053 4.525487 TCGACCAATACCAGACAAGTTAGT 59.475 41.667 0.00 0.00 0.00 2.24
2241 3074 8.272545 AGTTAGTTTTTAGTCCAAGAAAACGT 57.727 30.769 0.00 0.00 44.05 3.99
2251 3084 2.943033 CCAAGAAAACGTGGAGAAGTGT 59.057 45.455 0.00 0.00 37.03 3.55
2288 3121 2.388232 GGCGTACGAGGCAAACTGG 61.388 63.158 21.65 0.00 36.61 4.00
2289 3122 3.023591 GCGTACGAGGCAAACTGGC 62.024 63.158 21.65 0.00 44.10 4.85
2290 3123 1.666553 CGTACGAGGCAAACTGGCA 60.667 57.895 10.44 0.00 46.46 4.92
2291 3124 1.225376 CGTACGAGGCAAACTGGCAA 61.225 55.000 10.44 0.00 46.46 4.52
2432 3292 8.703604 CTATGCTGACAAAAAGCTTAGTAGTA 57.296 34.615 0.00 0.00 40.71 1.82
2458 3318 7.961351 ACATTTTTACCAAGATGTTGATTCCA 58.039 30.769 3.74 0.00 34.77 3.53
2459 3319 7.872483 ACATTTTTACCAAGATGTTGATTCCAC 59.128 33.333 3.74 0.00 34.77 4.02
2462 3322 8.642935 TTTTACCAAGATGTTGATTCCACATA 57.357 30.769 3.74 0.00 35.46 2.29
2464 3324 6.949352 ACCAAGATGTTGATTCCACATATC 57.051 37.500 3.74 0.00 35.46 1.63
2465 3325 5.528690 ACCAAGATGTTGATTCCACATATCG 59.471 40.000 3.74 0.00 35.46 2.92
2466 3326 5.759763 CCAAGATGTTGATTCCACATATCGA 59.240 40.000 3.74 0.00 35.46 3.59
2471 3331 9.730705 AGATGTTGATTCCACATATCGATAAAT 57.269 29.630 9.61 4.14 0.00 1.40
2527 3387 6.868339 AGTTTTTATGTACAAATTGAGGCTGC 59.132 34.615 0.00 0.00 0.00 5.25
2530 3390 1.804151 TGTACAAATTGAGGCTGCGAC 59.196 47.619 0.00 0.00 0.00 5.19
2534 3394 1.267806 CAAATTGAGGCTGCGACTGTT 59.732 47.619 0.00 0.00 0.00 3.16
2585 3449 1.145738 ACAACAGAAGCAGGTTGGGAT 59.854 47.619 9.06 0.00 46.56 3.85
2720 3586 5.123936 GGTAGATACAGACAAATTGGACCC 58.876 45.833 0.00 0.00 0.00 4.46
2732 3598 1.227249 TTGGACCCCTTCCTCAACAA 58.773 50.000 0.00 0.00 46.10 2.83
2735 3601 1.003696 GGACCCCTTCCTCAACAAGAG 59.996 57.143 0.00 0.00 41.95 2.85
2744 3610 2.031120 CCTCAACAAGAGCCCAAACAA 58.969 47.619 0.00 0.00 43.31 2.83
2811 3678 3.485346 TTGGTGAAGCCGTGTCCCC 62.485 63.158 0.00 0.00 41.21 4.81
2813 3680 3.948719 GTGAAGCCGTGTCCCCCA 61.949 66.667 0.00 0.00 0.00 4.96
2814 3681 3.636231 TGAAGCCGTGTCCCCCAG 61.636 66.667 0.00 0.00 0.00 4.45
2821 3690 2.526110 GTGTCCCCCAGCCCTTTT 59.474 61.111 0.00 0.00 0.00 2.27
2824 3693 1.155155 GTCCCCCAGCCCTTTTCAA 59.845 57.895 0.00 0.00 0.00 2.69
2835 3704 3.640967 AGCCCTTTTCAACTATTGCACAA 59.359 39.130 0.00 0.00 0.00 3.33
2842 3711 9.260002 CCTTTTCAACTATTGCACAACTAAATT 57.740 29.630 0.00 0.00 0.00 1.82
2955 3839 5.047021 GCATATCTAGATGTGCCCTAGACAA 60.047 44.000 32.93 4.56 46.14 3.18
2976 3860 9.705290 AGACAAACACTTTCAATAACAGTTTTT 57.295 25.926 0.00 0.00 0.00 1.94
2999 3883 7.503521 TTTTGTGTGATGAATACACTTAGCA 57.496 32.000 9.34 0.00 46.49 3.49
3000 3884 6.726258 TTGTGTGATGAATACACTTAGCAG 57.274 37.500 9.34 0.00 46.49 4.24
3001 3885 4.631377 TGTGTGATGAATACACTTAGCAGC 59.369 41.667 9.34 0.00 46.49 5.25
3002 3886 3.865164 TGTGATGAATACACTTAGCAGCG 59.135 43.478 0.00 0.00 38.81 5.18
3003 3887 3.865745 GTGATGAATACACTTAGCAGCGT 59.134 43.478 0.00 0.00 35.66 5.07
3004 3888 5.041287 GTGATGAATACACTTAGCAGCGTA 58.959 41.667 0.00 0.00 35.66 4.42
3005 3889 5.692204 GTGATGAATACACTTAGCAGCGTAT 59.308 40.000 0.00 0.00 35.66 3.06
3006 3890 5.920840 TGATGAATACACTTAGCAGCGTATC 59.079 40.000 0.00 0.00 28.57 2.24
3007 3891 5.257082 TGAATACACTTAGCAGCGTATCA 57.743 39.130 0.00 0.00 28.57 2.15
3008 3892 5.842907 TGAATACACTTAGCAGCGTATCAT 58.157 37.500 0.00 0.00 28.57 2.45
3009 3893 6.280643 TGAATACACTTAGCAGCGTATCATT 58.719 36.000 0.00 0.00 28.57 2.57
3010 3894 6.761242 TGAATACACTTAGCAGCGTATCATTT 59.239 34.615 0.00 0.00 28.57 2.32
3011 3895 6.771188 ATACACTTAGCAGCGTATCATTTC 57.229 37.500 0.00 0.00 0.00 2.17
3012 3896 4.503910 ACACTTAGCAGCGTATCATTTCA 58.496 39.130 0.00 0.00 0.00 2.69
3013 3897 5.118990 ACACTTAGCAGCGTATCATTTCAT 58.881 37.500 0.00 0.00 0.00 2.57
3014 3898 5.586243 ACACTTAGCAGCGTATCATTTCATT 59.414 36.000 0.00 0.00 0.00 2.57
3015 3899 5.905733 CACTTAGCAGCGTATCATTTCATTG 59.094 40.000 0.00 0.00 0.00 2.82
3016 3900 5.817296 ACTTAGCAGCGTATCATTTCATTGA 59.183 36.000 0.00 0.00 0.00 2.57
3017 3901 6.484643 ACTTAGCAGCGTATCATTTCATTGAT 59.515 34.615 0.00 0.00 39.60 2.57
3018 3902 7.657354 ACTTAGCAGCGTATCATTTCATTGATA 59.343 33.333 0.00 0.00 37.51 2.15
3019 3903 6.477669 AGCAGCGTATCATTTCATTGATAG 57.522 37.500 0.00 0.00 38.83 2.08
3020 3904 5.410746 AGCAGCGTATCATTTCATTGATAGG 59.589 40.000 8.89 8.89 42.88 2.57
3021 3905 5.391310 GCAGCGTATCATTTCATTGATAGGG 60.391 44.000 13.10 3.53 41.46 3.53
3022 3906 5.122869 CAGCGTATCATTTCATTGATAGGGG 59.877 44.000 13.10 1.70 41.46 4.79
3023 3907 5.003804 GCGTATCATTTCATTGATAGGGGT 58.996 41.667 13.10 0.00 41.46 4.95
3024 3908 6.013725 AGCGTATCATTTCATTGATAGGGGTA 60.014 38.462 13.10 0.00 41.46 3.69
3025 3909 6.313905 GCGTATCATTTCATTGATAGGGGTAG 59.686 42.308 13.10 0.00 41.46 3.18
3026 3910 7.611770 CGTATCATTTCATTGATAGGGGTAGA 58.388 38.462 6.36 0.00 38.83 2.59
3027 3911 7.761704 CGTATCATTTCATTGATAGGGGTAGAG 59.238 40.741 6.36 0.00 38.83 2.43
3028 3912 7.878621 ATCATTTCATTGATAGGGGTAGAGA 57.121 36.000 0.00 0.00 34.59 3.10
3029 3913 7.308450 TCATTTCATTGATAGGGGTAGAGAG 57.692 40.000 0.00 0.00 0.00 3.20
3030 3914 6.846505 TCATTTCATTGATAGGGGTAGAGAGT 59.153 38.462 0.00 0.00 0.00 3.24
3031 3915 7.348274 TCATTTCATTGATAGGGGTAGAGAGTT 59.652 37.037 0.00 0.00 0.00 3.01
3032 3916 6.485830 TTCATTGATAGGGGTAGAGAGTTG 57.514 41.667 0.00 0.00 0.00 3.16
3033 3917 4.345257 TCATTGATAGGGGTAGAGAGTTGC 59.655 45.833 0.00 0.00 0.00 4.17
3034 3918 2.679082 TGATAGGGGTAGAGAGTTGCC 58.321 52.381 0.00 0.00 0.00 4.52
3035 3919 2.023404 TGATAGGGGTAGAGAGTTGCCA 60.023 50.000 0.00 0.00 0.00 4.92
3036 3920 2.160721 TAGGGGTAGAGAGTTGCCAG 57.839 55.000 0.00 0.00 0.00 4.85
3037 3921 0.117340 AGGGGTAGAGAGTTGCCAGT 59.883 55.000 0.00 0.00 0.00 4.00
3038 3922 0.984995 GGGGTAGAGAGTTGCCAGTT 59.015 55.000 0.00 0.00 0.00 3.16
3039 3923 1.351350 GGGGTAGAGAGTTGCCAGTTT 59.649 52.381 0.00 0.00 0.00 2.66
3040 3924 2.570302 GGGGTAGAGAGTTGCCAGTTTA 59.430 50.000 0.00 0.00 0.00 2.01
3041 3925 3.200165 GGGGTAGAGAGTTGCCAGTTTAT 59.800 47.826 0.00 0.00 0.00 1.40
3042 3926 4.324331 GGGGTAGAGAGTTGCCAGTTTATT 60.324 45.833 0.00 0.00 0.00 1.40
3043 3927 4.636206 GGGTAGAGAGTTGCCAGTTTATTG 59.364 45.833 0.00 0.00 0.00 1.90
3044 3928 5.488341 GGTAGAGAGTTGCCAGTTTATTGA 58.512 41.667 0.00 0.00 0.00 2.57
3045 3929 5.938125 GGTAGAGAGTTGCCAGTTTATTGAA 59.062 40.000 0.00 0.00 0.00 2.69
3046 3930 6.430000 GGTAGAGAGTTGCCAGTTTATTGAAA 59.570 38.462 0.00 0.00 0.00 2.69
3047 3931 6.319141 AGAGAGTTGCCAGTTTATTGAAAC 57.681 37.500 0.00 0.00 44.56 2.78
3048 3932 5.827797 AGAGAGTTGCCAGTTTATTGAAACA 59.172 36.000 3.60 0.00 46.30 2.83
3049 3933 6.491403 AGAGAGTTGCCAGTTTATTGAAACAT 59.509 34.615 3.60 0.00 46.30 2.71
3050 3934 6.449698 AGAGTTGCCAGTTTATTGAAACATG 58.550 36.000 3.60 0.00 46.30 3.21
3051 3935 4.990426 AGTTGCCAGTTTATTGAAACATGC 59.010 37.500 0.00 5.62 46.30 4.06
3052 3936 3.924144 TGCCAGTTTATTGAAACATGCC 58.076 40.909 0.00 0.00 46.30 4.40
3053 3937 3.577848 TGCCAGTTTATTGAAACATGCCT 59.422 39.130 0.00 0.00 46.30 4.75
3054 3938 4.176271 GCCAGTTTATTGAAACATGCCTC 58.824 43.478 0.00 0.00 46.30 4.70
3055 3939 4.082026 GCCAGTTTATTGAAACATGCCTCT 60.082 41.667 0.00 0.00 46.30 3.69
3056 3940 5.404946 CCAGTTTATTGAAACATGCCTCTG 58.595 41.667 0.00 0.00 46.30 3.35
3057 3941 5.047802 CCAGTTTATTGAAACATGCCTCTGT 60.048 40.000 0.00 0.00 46.30 3.41
3058 3942 6.449698 CAGTTTATTGAAACATGCCTCTGTT 58.550 36.000 0.00 0.00 46.30 3.16
3059 3943 6.364165 CAGTTTATTGAAACATGCCTCTGTTG 59.636 38.462 0.00 0.00 46.30 3.33
3060 3944 6.265196 AGTTTATTGAAACATGCCTCTGTTGA 59.735 34.615 0.00 0.00 46.30 3.18
3061 3945 6.839124 TTATTGAAACATGCCTCTGTTGAT 57.161 33.333 0.00 0.00 39.25 2.57
3062 3946 4.508461 TTGAAACATGCCTCTGTTGATG 57.492 40.909 0.00 0.00 39.25 3.07
3063 3947 2.821378 TGAAACATGCCTCTGTTGATGG 59.179 45.455 0.00 0.00 39.25 3.51
3064 3948 2.592102 AACATGCCTCTGTTGATGGT 57.408 45.000 0.00 0.00 37.93 3.55
3065 3949 3.719268 AACATGCCTCTGTTGATGGTA 57.281 42.857 0.00 0.00 37.93 3.25
3066 3950 3.939740 ACATGCCTCTGTTGATGGTAT 57.060 42.857 0.00 0.00 0.00 2.73
3067 3951 4.240881 ACATGCCTCTGTTGATGGTATT 57.759 40.909 0.00 0.00 0.00 1.89
3068 3952 4.603131 ACATGCCTCTGTTGATGGTATTT 58.397 39.130 0.00 0.00 0.00 1.40
3069 3953 5.018809 ACATGCCTCTGTTGATGGTATTTT 58.981 37.500 0.00 0.00 0.00 1.82
3070 3954 6.186957 ACATGCCTCTGTTGATGGTATTTTA 58.813 36.000 0.00 0.00 0.00 1.52
3071 3955 6.835488 ACATGCCTCTGTTGATGGTATTTTAT 59.165 34.615 0.00 0.00 0.00 1.40
3072 3956 7.342799 ACATGCCTCTGTTGATGGTATTTTATT 59.657 33.333 0.00 0.00 0.00 1.40
3073 3957 7.716799 TGCCTCTGTTGATGGTATTTTATTT 57.283 32.000 0.00 0.00 0.00 1.40
3074 3958 8.133024 TGCCTCTGTTGATGGTATTTTATTTT 57.867 30.769 0.00 0.00 0.00 1.82
3075 3959 9.249053 TGCCTCTGTTGATGGTATTTTATTTTA 57.751 29.630 0.00 0.00 0.00 1.52
3076 3960 9.736023 GCCTCTGTTGATGGTATTTTATTTTAG 57.264 33.333 0.00 0.00 0.00 1.85
3132 4016 3.907894 TTTTGCGGGTGAATGTAAGAC 57.092 42.857 0.00 0.00 0.00 3.01
3133 4017 2.552599 TTGCGGGTGAATGTAAGACA 57.447 45.000 0.00 0.00 0.00 3.41
3134 4018 2.093306 TGCGGGTGAATGTAAGACAG 57.907 50.000 0.00 0.00 0.00 3.51
3135 4019 1.346395 TGCGGGTGAATGTAAGACAGT 59.654 47.619 0.00 0.00 0.00 3.55
3136 4020 2.224426 TGCGGGTGAATGTAAGACAGTT 60.224 45.455 0.00 0.00 0.00 3.16
3137 4021 2.812011 GCGGGTGAATGTAAGACAGTTT 59.188 45.455 0.00 0.00 0.00 2.66
3138 4022 3.252458 GCGGGTGAATGTAAGACAGTTTT 59.748 43.478 0.00 0.00 0.00 2.43
3139 4023 4.453136 GCGGGTGAATGTAAGACAGTTTTA 59.547 41.667 0.00 0.00 0.00 1.52
3140 4024 5.390567 GCGGGTGAATGTAAGACAGTTTTAG 60.391 44.000 0.00 0.00 0.00 1.85
3141 4025 5.390567 CGGGTGAATGTAAGACAGTTTTAGC 60.391 44.000 0.00 0.00 0.00 3.09
3142 4026 5.472137 GGGTGAATGTAAGACAGTTTTAGCA 59.528 40.000 0.00 0.00 0.00 3.49
3143 4027 6.348540 GGGTGAATGTAAGACAGTTTTAGCAG 60.349 42.308 0.00 0.00 0.00 4.24
3144 4028 6.204882 GGTGAATGTAAGACAGTTTTAGCAGT 59.795 38.462 0.00 0.00 0.00 4.40
3145 4029 7.255139 GGTGAATGTAAGACAGTTTTAGCAGTT 60.255 37.037 0.00 0.00 0.00 3.16
3146 4030 8.770828 GTGAATGTAAGACAGTTTTAGCAGTTA 58.229 33.333 0.00 0.00 0.00 2.24
3147 4031 9.332502 TGAATGTAAGACAGTTTTAGCAGTTAA 57.667 29.630 0.00 0.00 0.00 2.01
3148 4032 9.813080 GAATGTAAGACAGTTTTAGCAGTTAAG 57.187 33.333 0.00 0.00 0.00 1.85
3149 4033 7.186021 TGTAAGACAGTTTTAGCAGTTAAGC 57.814 36.000 0.00 0.00 0.00 3.09
3151 4035 6.546972 AAGACAGTTTTAGCAGTTAAGCTC 57.453 37.500 0.00 0.00 45.26 4.09
3152 4036 4.998033 AGACAGTTTTAGCAGTTAAGCTCC 59.002 41.667 0.00 0.00 45.26 4.70
3153 4037 4.974399 ACAGTTTTAGCAGTTAAGCTCCT 58.026 39.130 0.00 0.00 45.26 3.69
3154 4038 5.377478 ACAGTTTTAGCAGTTAAGCTCCTT 58.623 37.500 0.00 0.00 45.26 3.36
3155 4039 6.531021 ACAGTTTTAGCAGTTAAGCTCCTTA 58.469 36.000 0.00 0.00 45.26 2.69
3156 4040 6.996282 ACAGTTTTAGCAGTTAAGCTCCTTAA 59.004 34.615 0.00 0.00 45.26 1.85
3168 4052 7.633621 GTTAAGCTCCTTAACTACAAAAACGT 58.366 34.615 16.54 0.00 46.95 3.99
3169 4053 5.919272 AGCTCCTTAACTACAAAAACGTC 57.081 39.130 0.00 0.00 0.00 4.34
3170 4054 5.608449 AGCTCCTTAACTACAAAAACGTCT 58.392 37.500 0.00 0.00 0.00 4.18
3171 4055 6.053650 AGCTCCTTAACTACAAAAACGTCTT 58.946 36.000 0.00 0.00 0.00 3.01
3172 4056 7.212274 AGCTCCTTAACTACAAAAACGTCTTA 58.788 34.615 0.00 0.00 0.00 2.10
3173 4057 7.170489 AGCTCCTTAACTACAAAAACGTCTTAC 59.830 37.037 0.00 0.00 0.00 2.34
3174 4058 7.042523 GCTCCTTAACTACAAAAACGTCTTACA 60.043 37.037 0.00 0.00 0.00 2.41
3175 4059 8.891671 TCCTTAACTACAAAAACGTCTTACAT 57.108 30.769 0.00 0.00 0.00 2.29
3176 4060 9.328845 TCCTTAACTACAAAAACGTCTTACATT 57.671 29.630 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.573108 GTCACTCCCTCCCATGAAGA 58.427 55.000 0.00 0.00 0.00 2.87
1 2 0.543749 GGTCACTCCCTCCCATGAAG 59.456 60.000 0.00 0.00 0.00 3.02
2 3 0.178876 TGGTCACTCCCTCCCATGAA 60.179 55.000 0.00 0.00 34.77 2.57
157 158 2.439960 CCTGGTATGGTGGCGGCTA 61.440 63.158 11.43 0.00 0.00 3.93
194 195 1.441311 CACCGCCAAAAGGCTTGTT 59.559 52.632 0.00 0.00 0.00 2.83
306 307 1.959226 GCGACGCCTGAAGGAACAA 60.959 57.895 9.14 0.00 37.39 2.83
338 341 4.802051 GAAGGCTGGCCGCATCCA 62.802 66.667 18.87 0.00 41.67 3.41
348 351 2.619147 CATCAGACACAGAGAAGGCTG 58.381 52.381 0.00 0.00 41.63 4.85
351 354 2.093764 GTCCCATCAGACACAGAGAAGG 60.094 54.545 0.00 0.00 36.73 3.46
358 361 0.891904 TCGTCGTCCCATCAGACACA 60.892 55.000 0.00 0.00 36.52 3.72
380 383 0.398522 TCACCAGGGCCTATCACGAT 60.399 55.000 5.28 0.00 0.00 3.73
388 391 1.997874 GACTCCATCACCAGGGCCT 60.998 63.158 0.00 0.00 0.00 5.19
393 396 1.135915 CCTCTTCGACTCCATCACCAG 59.864 57.143 0.00 0.00 0.00 4.00
418 421 1.408969 TCTTTTTGTGTTGAGCCCCC 58.591 50.000 0.00 0.00 0.00 5.40
423 426 6.145048 GCAATCCTCATTCTTTTTGTGTTGAG 59.855 38.462 0.00 0.00 0.00 3.02
426 429 5.163322 TGGCAATCCTCATTCTTTTTGTGTT 60.163 36.000 0.00 0.00 0.00 3.32
431 434 6.999871 ACATTTTGGCAATCCTCATTCTTTTT 59.000 30.769 0.00 0.00 0.00 1.94
441 444 0.247185 CCGCACATTTTGGCAATCCT 59.753 50.000 0.00 0.00 0.00 3.24
448 451 1.081509 CGACACCCGCACATTTTGG 60.082 57.895 0.00 0.00 0.00 3.28
604 626 3.140814 GGGGGCATCTCAAACGCC 61.141 66.667 0.00 0.00 45.47 5.68
606 628 2.398554 CGTGGGGGCATCTCAAACG 61.399 63.158 0.00 0.00 0.00 3.60
624 653 3.642778 CTGCCAGCAGTGCCAATGC 62.643 63.158 9.47 9.47 44.18 3.56
627 656 4.980702 CCCTGCCAGCAGTGCCAA 62.981 66.667 17.86 0.00 42.15 4.52
775 1563 1.664649 GTGGGCTTTGCTTTTCGGC 60.665 57.895 0.00 0.00 0.00 5.54
779 1567 1.739667 GGTCGTGGGCTTTGCTTTT 59.260 52.632 0.00 0.00 0.00 2.27
874 1662 2.125512 GTGGTAGGTGGCGAGCAG 60.126 66.667 0.00 0.00 0.00 4.24
891 1679 1.622607 TACGCAGGAGGAATGGTGGG 61.623 60.000 0.00 0.00 0.00 4.61
1198 2018 0.745845 GACTCCTCGTACGCCAGGTA 60.746 60.000 19.24 8.32 0.00 3.08
1201 2021 2.799371 GGACTCCTCGTACGCCAG 59.201 66.667 11.24 8.31 0.00 4.85
1308 2128 4.807834 CAGGAGAATGTATGCACAGTACTG 59.192 45.833 21.44 21.44 38.30 2.74
1316 2136 2.760650 AGACGACAGGAGAATGTATGCA 59.239 45.455 0.00 0.00 32.25 3.96
1353 2178 4.219944 TCTTATTATAATGAGCTCGCCGGT 59.780 41.667 9.64 0.00 0.00 5.28
1374 2199 2.010670 CGAGAGAGACGCGTGATCT 58.989 57.895 20.70 20.42 37.06 2.75
1569 2394 0.872881 CCGACGACGTGGAACTTGTT 60.873 55.000 11.89 0.00 37.88 2.83
1625 2450 2.432300 CCGCTCCGGGATGTACCTT 61.432 63.158 0.00 0.00 44.15 3.50
2219 3050 6.822676 TCCACGTTTTCTTGGACTAAAAACTA 59.177 34.615 7.94 0.00 42.18 2.24
2220 3051 5.648960 TCCACGTTTTCTTGGACTAAAAACT 59.351 36.000 7.94 0.00 42.18 2.66
2221 3052 5.882553 TCCACGTTTTCTTGGACTAAAAAC 58.117 37.500 0.00 0.00 42.18 2.43
2222 3053 5.881443 TCTCCACGTTTTCTTGGACTAAAAA 59.119 36.000 0.00 0.00 42.18 1.94
2241 3074 2.452600 AAAGGCCAAACACTTCTCCA 57.547 45.000 5.01 0.00 0.00 3.86
2251 3084 2.446435 CCAAGCTAGCTAAAGGCCAAA 58.554 47.619 19.70 0.00 43.05 3.28
2288 3121 2.154462 ACATACTGTCCTGCACTTTGC 58.846 47.619 0.00 0.00 45.29 3.68
2402 3238 6.833342 AAGCTTTTTGTCAGCATAGTTTTG 57.167 33.333 0.00 0.00 39.99 2.44
2432 3292 8.428063 TGGAATCAACATCTTGGTAAAAATGTT 58.572 29.630 0.00 0.00 41.67 2.71
2476 3336 2.746279 ACCCATGGTTGACAGTTTCA 57.254 45.000 11.73 0.00 27.29 2.69
2523 3383 3.334272 AAAAACAGTAACAGTCGCAGC 57.666 42.857 0.00 0.00 0.00 5.25
2561 3425 2.808543 CCAACCTGCTTCTGTTGTCTAC 59.191 50.000 0.00 0.00 40.12 2.59
2585 3449 6.601332 ACCTCTTTCATTTCTCTAACCAACA 58.399 36.000 0.00 0.00 0.00 3.33
2720 3586 0.401738 TGGGCTCTTGTTGAGGAAGG 59.598 55.000 0.00 0.00 42.87 3.46
2732 3598 3.575805 TCCTTGATTTTGTTTGGGCTCT 58.424 40.909 0.00 0.00 0.00 4.09
2735 3601 4.021192 TCTGATCCTTGATTTTGTTTGGGC 60.021 41.667 0.00 0.00 0.00 5.36
2744 3610 7.607991 ACGAACTGTTATTCTGATCCTTGATTT 59.392 33.333 0.00 0.00 0.00 2.17
2811 3678 2.562298 TGCAATAGTTGAAAAGGGCTGG 59.438 45.455 0.00 0.00 0.00 4.85
2813 3680 3.230134 TGTGCAATAGTTGAAAAGGGCT 58.770 40.909 0.00 0.00 0.00 5.19
2814 3681 3.658757 TGTGCAATAGTTGAAAAGGGC 57.341 42.857 0.00 0.00 0.00 5.19
2824 3693 9.448438 TGACATAGAATTTAGTTGTGCAATAGT 57.552 29.630 0.00 0.00 0.00 2.12
2853 3722 8.036575 TGCTTGCAAGAATCTTAGCATAAAATT 58.963 29.630 30.39 0.00 36.80 1.82
2860 3729 5.395682 AAATGCTTGCAAGAATCTTAGCA 57.604 34.783 30.39 18.74 42.14 3.49
2931 3815 4.464244 TGTCTAGGGCACATCTAGATATGC 59.536 45.833 24.83 24.83 43.25 3.14
2933 3817 6.554982 TGTTTGTCTAGGGCACATCTAGATAT 59.445 38.462 4.54 0.00 43.25 1.63
2934 3818 5.897250 TGTTTGTCTAGGGCACATCTAGATA 59.103 40.000 4.54 0.00 43.25 1.98
2946 3830 7.228706 ACTGTTATTGAAAGTGTTTGTCTAGGG 59.771 37.037 0.00 0.00 0.00 3.53
2979 3863 4.259970 CGCTGCTAAGTGTATTCATCACAC 60.260 45.833 0.00 0.00 45.36 3.82
2980 3864 3.865164 CGCTGCTAAGTGTATTCATCACA 59.135 43.478 0.00 0.00 38.16 3.58
2981 3865 3.865745 ACGCTGCTAAGTGTATTCATCAC 59.134 43.478 0.00 0.00 45.35 3.06
2982 3866 4.123497 ACGCTGCTAAGTGTATTCATCA 57.877 40.909 0.00 0.00 45.35 3.07
2991 3875 5.663795 ATGAAATGATACGCTGCTAAGTG 57.336 39.130 0.00 0.00 39.95 3.16
2992 3876 5.817296 TCAATGAAATGATACGCTGCTAAGT 59.183 36.000 0.00 0.00 0.00 2.24
2993 3877 6.291067 TCAATGAAATGATACGCTGCTAAG 57.709 37.500 0.00 0.00 0.00 2.18
2994 3878 6.866010 ATCAATGAAATGATACGCTGCTAA 57.134 33.333 0.00 0.00 38.25 3.09
2995 3879 6.591448 CCTATCAATGAAATGATACGCTGCTA 59.409 38.462 0.00 0.00 40.44 3.49
2996 3880 5.410746 CCTATCAATGAAATGATACGCTGCT 59.589 40.000 0.00 0.00 40.44 4.24
2997 3881 5.391310 CCCTATCAATGAAATGATACGCTGC 60.391 44.000 0.00 0.00 40.44 5.25
2998 3882 5.122869 CCCCTATCAATGAAATGATACGCTG 59.877 44.000 0.00 0.00 40.44 5.18
2999 3883 5.221925 ACCCCTATCAATGAAATGATACGCT 60.222 40.000 0.00 0.00 40.44 5.07
3000 3884 5.003804 ACCCCTATCAATGAAATGATACGC 58.996 41.667 0.00 0.00 40.44 4.42
3001 3885 7.611770 TCTACCCCTATCAATGAAATGATACG 58.388 38.462 0.00 0.00 40.44 3.06
3002 3886 8.816894 TCTCTACCCCTATCAATGAAATGATAC 58.183 37.037 0.00 0.00 40.44 2.24
3003 3887 8.972662 TCTCTACCCCTATCAATGAAATGATA 57.027 34.615 0.00 0.00 40.44 2.15
3004 3888 7.515514 ACTCTCTACCCCTATCAATGAAATGAT 59.484 37.037 0.00 0.00 42.52 2.45
3005 3889 6.846505 ACTCTCTACCCCTATCAATGAAATGA 59.153 38.462 0.00 0.00 0.00 2.57
3006 3890 7.072263 ACTCTCTACCCCTATCAATGAAATG 57.928 40.000 0.00 0.00 0.00 2.32
3007 3891 7.512992 CAACTCTCTACCCCTATCAATGAAAT 58.487 38.462 0.00 0.00 0.00 2.17
3008 3892 6.632672 GCAACTCTCTACCCCTATCAATGAAA 60.633 42.308 0.00 0.00 0.00 2.69
3009 3893 5.163301 GCAACTCTCTACCCCTATCAATGAA 60.163 44.000 0.00 0.00 0.00 2.57
3010 3894 4.345257 GCAACTCTCTACCCCTATCAATGA 59.655 45.833 0.00 0.00 0.00 2.57
3011 3895 4.503991 GGCAACTCTCTACCCCTATCAATG 60.504 50.000 0.00 0.00 0.00 2.82
3012 3896 3.648545 GGCAACTCTCTACCCCTATCAAT 59.351 47.826 0.00 0.00 0.00 2.57
3013 3897 3.039011 GGCAACTCTCTACCCCTATCAA 58.961 50.000 0.00 0.00 0.00 2.57
3014 3898 2.023404 TGGCAACTCTCTACCCCTATCA 60.023 50.000 0.00 0.00 37.61 2.15
3015 3899 2.630580 CTGGCAACTCTCTACCCCTATC 59.369 54.545 0.00 0.00 37.61 2.08
3016 3900 2.022918 ACTGGCAACTCTCTACCCCTAT 60.023 50.000 0.00 0.00 37.61 2.57
3017 3901 1.361543 ACTGGCAACTCTCTACCCCTA 59.638 52.381 0.00 0.00 37.61 3.53
3018 3902 0.117340 ACTGGCAACTCTCTACCCCT 59.883 55.000 0.00 0.00 37.61 4.79
3019 3903 0.984995 AACTGGCAACTCTCTACCCC 59.015 55.000 0.00 0.00 37.61 4.95
3020 3904 2.861147 AAACTGGCAACTCTCTACCC 57.139 50.000 0.00 0.00 37.61 3.69
3021 3905 5.488341 TCAATAAACTGGCAACTCTCTACC 58.512 41.667 0.00 0.00 37.61 3.18
3022 3906 7.041372 TGTTTCAATAAACTGGCAACTCTCTAC 60.041 37.037 3.01 0.00 44.44 2.59
3023 3907 6.995686 TGTTTCAATAAACTGGCAACTCTCTA 59.004 34.615 3.01 0.00 44.44 2.43
3024 3908 5.827797 TGTTTCAATAAACTGGCAACTCTCT 59.172 36.000 3.01 0.00 44.44 3.10
3025 3909 6.072112 TGTTTCAATAAACTGGCAACTCTC 57.928 37.500 3.01 0.00 44.44 3.20
3026 3910 6.449698 CATGTTTCAATAAACTGGCAACTCT 58.550 36.000 3.01 0.00 44.44 3.24
3027 3911 5.119125 GCATGTTTCAATAAACTGGCAACTC 59.881 40.000 0.00 0.00 44.44 3.01
3028 3912 4.990426 GCATGTTTCAATAAACTGGCAACT 59.010 37.500 0.00 0.00 44.44 3.16
3029 3913 4.152223 GGCATGTTTCAATAAACTGGCAAC 59.848 41.667 15.30 0.00 44.44 4.17
3030 3914 4.040217 AGGCATGTTTCAATAAACTGGCAA 59.960 37.500 18.99 0.00 44.44 4.52
3031 3915 3.577848 AGGCATGTTTCAATAAACTGGCA 59.422 39.130 18.99 0.00 44.44 4.92
3032 3916 4.082026 AGAGGCATGTTTCAATAAACTGGC 60.082 41.667 13.71 13.71 44.44 4.85
3033 3917 5.047802 ACAGAGGCATGTTTCAATAAACTGG 60.048 40.000 0.00 0.00 44.44 4.00
3034 3918 6.017400 ACAGAGGCATGTTTCAATAAACTG 57.983 37.500 0.00 0.00 44.44 3.16
3035 3919 6.265196 TCAACAGAGGCATGTTTCAATAAACT 59.735 34.615 5.48 0.00 44.44 2.66
3036 3920 6.446318 TCAACAGAGGCATGTTTCAATAAAC 58.554 36.000 5.48 0.00 41.41 2.01
3037 3921 6.647334 TCAACAGAGGCATGTTTCAATAAA 57.353 33.333 5.48 0.00 41.41 1.40
3038 3922 6.350361 CCATCAACAGAGGCATGTTTCAATAA 60.350 38.462 5.48 0.00 41.41 1.40
3039 3923 5.125900 CCATCAACAGAGGCATGTTTCAATA 59.874 40.000 5.48 0.00 41.41 1.90
3040 3924 4.081862 CCATCAACAGAGGCATGTTTCAAT 60.082 41.667 5.48 0.00 41.41 2.57
3041 3925 3.256383 CCATCAACAGAGGCATGTTTCAA 59.744 43.478 5.48 0.00 41.41 2.69
3042 3926 2.821378 CCATCAACAGAGGCATGTTTCA 59.179 45.455 5.48 0.00 41.41 2.69
3043 3927 2.821969 ACCATCAACAGAGGCATGTTTC 59.178 45.455 5.48 0.00 41.41 2.78
3044 3928 2.880443 ACCATCAACAGAGGCATGTTT 58.120 42.857 5.48 0.00 41.41 2.83
3045 3929 2.592102 ACCATCAACAGAGGCATGTT 57.408 45.000 2.62 2.62 44.12 2.71
3046 3930 3.939740 ATACCATCAACAGAGGCATGT 57.060 42.857 0.00 0.00 33.96 3.21
3047 3931 5.587388 AAAATACCATCAACAGAGGCATG 57.413 39.130 0.00 0.00 0.00 4.06
3048 3932 7.902920 AATAAAATACCATCAACAGAGGCAT 57.097 32.000 0.00 0.00 0.00 4.40
3049 3933 7.716799 AAATAAAATACCATCAACAGAGGCA 57.283 32.000 0.00 0.00 0.00 4.75
3050 3934 9.736023 CTAAAATAAAATACCATCAACAGAGGC 57.264 33.333 0.00 0.00 0.00 4.70
3111 3995 3.632604 TGTCTTACATTCACCCGCAAAAA 59.367 39.130 0.00 0.00 0.00 1.94
3112 3996 3.215151 TGTCTTACATTCACCCGCAAAA 58.785 40.909 0.00 0.00 0.00 2.44
3113 3997 2.811431 CTGTCTTACATTCACCCGCAAA 59.189 45.455 0.00 0.00 0.00 3.68
3114 3998 2.224426 ACTGTCTTACATTCACCCGCAA 60.224 45.455 0.00 0.00 0.00 4.85
3115 3999 1.346395 ACTGTCTTACATTCACCCGCA 59.654 47.619 0.00 0.00 0.00 5.69
3116 4000 2.094762 ACTGTCTTACATTCACCCGC 57.905 50.000 0.00 0.00 0.00 6.13
3117 4001 5.390567 GCTAAAACTGTCTTACATTCACCCG 60.391 44.000 0.00 0.00 0.00 5.28
3118 4002 5.472137 TGCTAAAACTGTCTTACATTCACCC 59.528 40.000 0.00 0.00 0.00 4.61
3119 4003 6.204882 ACTGCTAAAACTGTCTTACATTCACC 59.795 38.462 0.00 0.00 0.00 4.02
3120 4004 7.190920 ACTGCTAAAACTGTCTTACATTCAC 57.809 36.000 0.00 0.00 0.00 3.18
3121 4005 7.801716 AACTGCTAAAACTGTCTTACATTCA 57.198 32.000 0.00 0.00 0.00 2.57
3122 4006 9.813080 CTTAACTGCTAAAACTGTCTTACATTC 57.187 33.333 0.00 0.00 0.00 2.67
3123 4007 8.290325 GCTTAACTGCTAAAACTGTCTTACATT 58.710 33.333 0.00 0.00 0.00 2.71
3124 4008 7.661847 AGCTTAACTGCTAAAACTGTCTTACAT 59.338 33.333 0.00 0.00 42.10 2.29
3125 4009 6.990349 AGCTTAACTGCTAAAACTGTCTTACA 59.010 34.615 0.00 0.00 42.10 2.41
3126 4010 7.360185 GGAGCTTAACTGCTAAAACTGTCTTAC 60.360 40.741 0.00 0.00 44.17 2.34
3127 4011 6.649557 GGAGCTTAACTGCTAAAACTGTCTTA 59.350 38.462 0.00 0.00 44.17 2.10
3128 4012 5.470437 GGAGCTTAACTGCTAAAACTGTCTT 59.530 40.000 0.00 0.00 44.17 3.01
3129 4013 4.998033 GGAGCTTAACTGCTAAAACTGTCT 59.002 41.667 0.00 0.00 44.17 3.41
3130 4014 4.998033 AGGAGCTTAACTGCTAAAACTGTC 59.002 41.667 0.00 0.00 46.73 3.51
3131 4015 4.974399 AGGAGCTTAACTGCTAAAACTGT 58.026 39.130 0.00 0.00 46.73 3.55
3144 4028 7.712205 AGACGTTTTTGTAGTTAAGGAGCTTAA 59.288 33.333 0.00 0.00 34.12 1.85
3145 4029 7.212274 AGACGTTTTTGTAGTTAAGGAGCTTA 58.788 34.615 0.00 0.00 0.00 3.09
3146 4030 6.053650 AGACGTTTTTGTAGTTAAGGAGCTT 58.946 36.000 0.00 0.00 0.00 3.74
3147 4031 5.608449 AGACGTTTTTGTAGTTAAGGAGCT 58.392 37.500 0.00 0.00 0.00 4.09
3148 4032 5.919272 AGACGTTTTTGTAGTTAAGGAGC 57.081 39.130 0.00 0.00 0.00 4.70
3149 4033 8.356533 TGTAAGACGTTTTTGTAGTTAAGGAG 57.643 34.615 0.00 0.00 0.00 3.69
3150 4034 8.891671 ATGTAAGACGTTTTTGTAGTTAAGGA 57.108 30.769 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.