Multiple sequence alignment - TraesCS1D01G186200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G186200 chr1D 100.000 4091 0 0 1 4091 257004741 257008831 0.000000e+00 7555
1 TraesCS1D01G186200 chr1D 98.214 896 13 3 3198 4091 257014967 257015861 0.000000e+00 1563
2 TraesCS1D01G186200 chr1D 97.000 900 20 4 3198 4091 371686341 371685443 0.000000e+00 1506
3 TraesCS1D01G186200 chr1D 79.169 2189 414 33 1044 3211 112219223 112221390 0.000000e+00 1478
4 TraesCS1D01G186200 chr1D 78.555 2117 398 44 1028 3124 381317922 381320002 0.000000e+00 1343
5 TraesCS1D01G186200 chr6B 93.261 2597 152 3 608 3204 559511970 559509397 0.000000e+00 3805
6 TraesCS1D01G186200 chr6B 88.148 1215 144 0 611 1825 559063066 559061852 0.000000e+00 1447
7 TraesCS1D01G186200 chr6B 84.535 1332 203 3 1874 3204 559061850 559060521 0.000000e+00 1315
8 TraesCS1D01G186200 chr6A 91.353 1434 123 1 1511 2944 237362222 237363654 0.000000e+00 1960
9 TraesCS1D01G186200 chr6A 93.132 859 58 1 608 1466 237361365 237362222 0.000000e+00 1258
10 TraesCS1D01G186200 chr6A 80.622 1414 260 11 608 2014 52930625 52932031 0.000000e+00 1081
11 TraesCS1D01G186200 chr6A 75.902 1220 268 20 2010 3211 52943995 52945206 5.850000e-168 601
12 TraesCS1D01G186200 chr6A 94.717 265 14 0 2940 3204 237373051 237373315 2.940000e-111 412
13 TraesCS1D01G186200 chr7D 97.111 900 19 4 3198 4091 418933497 418932599 0.000000e+00 1511
14 TraesCS1D01G186200 chr7D 97.000 900 20 4 3198 4091 192565452 192564554 0.000000e+00 1506
15 TraesCS1D01G186200 chr5D 97.111 900 19 4 3198 4091 168981392 168982290 0.000000e+00 1511
16 TraesCS1D01G186200 chr5D 97.003 901 20 3 3198 4091 125332390 125333290 0.000000e+00 1507
17 TraesCS1D01G186200 chr5D 97.000 900 20 4 3198 4091 370220223 370221121 0.000000e+00 1506
18 TraesCS1D01G186200 chr5D 83.000 600 94 6 2618 3211 434820393 434820990 1.670000e-148 536
19 TraesCS1D01G186200 chr3D 97.315 894 17 4 3204 4091 552915258 552914366 0.000000e+00 1511
20 TraesCS1D01G186200 chr4D 97.108 899 17 6 3198 4091 97947037 97947931 0.000000e+00 1507
21 TraesCS1D01G186200 chr1B 93.155 599 41 0 2606 3204 390273302 390273900 0.000000e+00 880
22 TraesCS1D01G186200 chr1B 89.163 609 30 13 1 609 356203088 356202516 0.000000e+00 726
23 TraesCS1D01G186200 chr1A 92.990 485 26 4 126 609 330771725 330772202 0.000000e+00 701
24 TraesCS1D01G186200 chr1A 97.170 106 3 0 1 106 330771632 330771737 3.250000e-41 180
25 TraesCS1D01G186200 chr3B 78.037 601 126 6 2614 3211 663963499 663962902 1.390000e-99 374
26 TraesCS1D01G186200 chr5A 77.905 611 125 10 2605 3211 239468532 239469136 4.990000e-99 372
27 TraesCS1D01G186200 chr5B 77.280 603 118 18 2614 3211 671737119 671736531 1.820000e-88 337
28 TraesCS1D01G186200 chr2D 97.931 145 2 1 3060 3203 277216661 277216517 2.440000e-62 250


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G186200 chr1D 257004741 257008831 4090 False 7555.0 7555 100.0000 1 4091 1 chr1D.!!$F2 4090
1 TraesCS1D01G186200 chr1D 257014967 257015861 894 False 1563.0 1563 98.2140 3198 4091 1 chr1D.!!$F3 893
2 TraesCS1D01G186200 chr1D 371685443 371686341 898 True 1506.0 1506 97.0000 3198 4091 1 chr1D.!!$R1 893
3 TraesCS1D01G186200 chr1D 112219223 112221390 2167 False 1478.0 1478 79.1690 1044 3211 1 chr1D.!!$F1 2167
4 TraesCS1D01G186200 chr1D 381317922 381320002 2080 False 1343.0 1343 78.5550 1028 3124 1 chr1D.!!$F4 2096
5 TraesCS1D01G186200 chr6B 559509397 559511970 2573 True 3805.0 3805 93.2610 608 3204 1 chr6B.!!$R1 2596
6 TraesCS1D01G186200 chr6B 559060521 559063066 2545 True 1381.0 1447 86.3415 611 3204 2 chr6B.!!$R2 2593
7 TraesCS1D01G186200 chr6A 237361365 237363654 2289 False 1609.0 1960 92.2425 608 2944 2 chr6A.!!$F4 2336
8 TraesCS1D01G186200 chr6A 52930625 52932031 1406 False 1081.0 1081 80.6220 608 2014 1 chr6A.!!$F1 1406
9 TraesCS1D01G186200 chr6A 52943995 52945206 1211 False 601.0 601 75.9020 2010 3211 1 chr6A.!!$F2 1201
10 TraesCS1D01G186200 chr7D 418932599 418933497 898 True 1511.0 1511 97.1110 3198 4091 1 chr7D.!!$R2 893
11 TraesCS1D01G186200 chr7D 192564554 192565452 898 True 1506.0 1506 97.0000 3198 4091 1 chr7D.!!$R1 893
12 TraesCS1D01G186200 chr5D 168981392 168982290 898 False 1511.0 1511 97.1110 3198 4091 1 chr5D.!!$F2 893
13 TraesCS1D01G186200 chr5D 125332390 125333290 900 False 1507.0 1507 97.0030 3198 4091 1 chr5D.!!$F1 893
14 TraesCS1D01G186200 chr5D 370220223 370221121 898 False 1506.0 1506 97.0000 3198 4091 1 chr5D.!!$F3 893
15 TraesCS1D01G186200 chr5D 434820393 434820990 597 False 536.0 536 83.0000 2618 3211 1 chr5D.!!$F4 593
16 TraesCS1D01G186200 chr3D 552914366 552915258 892 True 1511.0 1511 97.3150 3204 4091 1 chr3D.!!$R1 887
17 TraesCS1D01G186200 chr4D 97947037 97947931 894 False 1507.0 1507 97.1080 3198 4091 1 chr4D.!!$F1 893
18 TraesCS1D01G186200 chr1B 390273302 390273900 598 False 880.0 880 93.1550 2606 3204 1 chr1B.!!$F1 598
19 TraesCS1D01G186200 chr1B 356202516 356203088 572 True 726.0 726 89.1630 1 609 1 chr1B.!!$R1 608
20 TraesCS1D01G186200 chr1A 330771632 330772202 570 False 440.5 701 95.0800 1 609 2 chr1A.!!$F1 608
21 TraesCS1D01G186200 chr3B 663962902 663963499 597 True 374.0 374 78.0370 2614 3211 1 chr3B.!!$R1 597
22 TraesCS1D01G186200 chr5A 239468532 239469136 604 False 372.0 372 77.9050 2605 3211 1 chr5A.!!$F1 606
23 TraesCS1D01G186200 chr5B 671736531 671737119 588 True 337.0 337 77.2800 2614 3211 1 chr5B.!!$R1 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
985 987 1.002888 CCTTGGAGATCTGTGTGCTGT 59.997 52.381 0.0 0.0 0.00 4.4 F
1948 1972 0.112412 AAATTTGGCGAGGACCCAGT 59.888 50.000 0.0 0.0 33.13 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2497 2539 0.039798 GTAGTCACGTCGCCAACAGA 60.040 55.0 0.0 0.0 0.0 3.41 R
3804 3868 0.178990 GTGGGCTGAAAGTGGAAGGT 60.179 55.0 0.0 0.0 35.3 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.731275 TTCTGTTGAATTCTTTGAGTAGAACA 57.269 30.769 7.05 4.75 37.00 3.18
100 101 5.209818 TGTTCTCCGTTGATTCTACTGTT 57.790 39.130 0.00 0.00 0.00 3.16
104 105 6.585695 TCTCCGTTGATTCTACTGTTACTT 57.414 37.500 0.00 0.00 0.00 2.24
106 107 5.475719 TCCGTTGATTCTACTGTTACTTGG 58.524 41.667 0.00 0.00 0.00 3.61
107 108 4.092968 CCGTTGATTCTACTGTTACTTGGC 59.907 45.833 0.00 0.00 0.00 4.52
108 109 4.092968 CGTTGATTCTACTGTTACTTGGCC 59.907 45.833 0.00 0.00 0.00 5.36
109 110 4.216411 TGATTCTACTGTTACTTGGCCC 57.784 45.455 0.00 0.00 0.00 5.80
110 111 2.754946 TTCTACTGTTACTTGGCCCG 57.245 50.000 0.00 0.00 0.00 6.13
111 112 1.636148 TCTACTGTTACTTGGCCCGT 58.364 50.000 0.00 0.00 0.00 5.28
112 113 1.972795 TCTACTGTTACTTGGCCCGTT 59.027 47.619 0.00 0.00 0.00 4.44
113 114 2.369532 TCTACTGTTACTTGGCCCGTTT 59.630 45.455 0.00 0.00 0.00 3.60
114 115 2.934886 ACTGTTACTTGGCCCGTTTA 57.065 45.000 0.00 0.00 0.00 2.01
115 116 3.211718 ACTGTTACTTGGCCCGTTTAA 57.788 42.857 0.00 0.00 0.00 1.52
116 117 3.553904 ACTGTTACTTGGCCCGTTTAAA 58.446 40.909 0.00 0.00 0.00 1.52
117 118 3.952967 ACTGTTACTTGGCCCGTTTAAAA 59.047 39.130 0.00 0.00 0.00 1.52
118 119 4.401837 ACTGTTACTTGGCCCGTTTAAAAA 59.598 37.500 0.00 0.00 0.00 1.94
197 198 7.875554 ACTCCCGCAACAAAATAACAATTTAAT 59.124 29.630 0.00 0.00 0.00 1.40
242 243 8.593945 ATTCCATCAACACCTTTGTTACATAT 57.406 30.769 0.00 0.00 44.57 1.78
244 245 7.825681 TCCATCAACACCTTTGTTACATATTG 58.174 34.615 0.00 0.00 44.57 1.90
245 246 7.667635 TCCATCAACACCTTTGTTACATATTGA 59.332 33.333 0.00 0.00 44.57 2.57
246 247 7.970061 CCATCAACACCTTTGTTACATATTGAG 59.030 37.037 0.00 0.00 44.57 3.02
247 248 8.514594 CATCAACACCTTTGTTACATATTGAGT 58.485 33.333 0.00 0.00 44.57 3.41
248 249 9.733556 ATCAACACCTTTGTTACATATTGAGTA 57.266 29.630 0.00 0.00 44.57 2.59
249 250 9.214957 TCAACACCTTTGTTACATATTGAGTAG 57.785 33.333 0.00 0.00 44.57 2.57
495 497 2.202878 CTATGGGTGGTGACGCGG 60.203 66.667 12.47 0.00 43.50 6.46
503 505 1.594836 TGGTGACGCGGGTAAACAC 60.595 57.895 12.47 8.87 0.00 3.32
544 546 3.754850 GCCTAACCCTACGACATTGTTTT 59.245 43.478 0.00 0.00 0.00 2.43
726 728 4.794648 CCCCCGCTTTGCATCCGA 62.795 66.667 0.00 0.00 0.00 4.55
788 790 3.790437 CAGCCCCATCTCTGCGGT 61.790 66.667 0.00 0.00 0.00 5.68
968 970 2.722201 CGCCCTAGCCGTCTTCCTT 61.722 63.158 0.00 0.00 34.57 3.36
985 987 1.002888 CCTTGGAGATCTGTGTGCTGT 59.997 52.381 0.00 0.00 0.00 4.40
1294 1296 2.493675 TCTCGGTTGATGAGAGTTCAGG 59.506 50.000 0.00 0.00 37.55 3.86
1295 1297 2.232452 CTCGGTTGATGAGAGTTCAGGT 59.768 50.000 0.00 0.00 36.61 4.00
1296 1298 2.632996 TCGGTTGATGAGAGTTCAGGTT 59.367 45.455 0.00 0.00 36.61 3.50
1297 1299 2.738846 CGGTTGATGAGAGTTCAGGTTG 59.261 50.000 0.00 0.00 36.61 3.77
1298 1300 3.554960 CGGTTGATGAGAGTTCAGGTTGA 60.555 47.826 0.00 0.00 36.61 3.18
1299 1301 3.748568 GGTTGATGAGAGTTCAGGTTGAC 59.251 47.826 0.00 0.00 36.61 3.18
1300 1302 3.303881 TGATGAGAGTTCAGGTTGACG 57.696 47.619 0.00 0.00 36.61 4.35
1301 1303 2.628178 TGATGAGAGTTCAGGTTGACGT 59.372 45.455 0.00 0.00 36.61 4.34
1302 1304 2.509052 TGAGAGTTCAGGTTGACGTG 57.491 50.000 0.00 0.00 0.00 4.49
1303 1305 2.028876 TGAGAGTTCAGGTTGACGTGA 58.971 47.619 0.00 2.65 38.77 4.35
1304 1306 2.628178 TGAGAGTTCAGGTTGACGTGAT 59.372 45.455 7.28 0.00 39.99 3.06
1305 1307 2.989840 GAGAGTTCAGGTTGACGTGATG 59.010 50.000 7.28 0.00 39.99 3.07
1306 1308 2.628178 AGAGTTCAGGTTGACGTGATGA 59.372 45.455 7.28 0.00 39.99 2.92
1307 1309 3.259374 AGAGTTCAGGTTGACGTGATGAT 59.741 43.478 7.28 0.00 39.99 2.45
1308 1310 3.997021 GAGTTCAGGTTGACGTGATGATT 59.003 43.478 7.28 0.00 39.99 2.57
1309 1311 3.748048 AGTTCAGGTTGACGTGATGATTG 59.252 43.478 7.28 0.00 39.99 2.67
1310 1312 3.676291 TCAGGTTGACGTGATGATTGA 57.324 42.857 0.00 0.00 36.04 2.57
1311 1313 4.001618 TCAGGTTGACGTGATGATTGAA 57.998 40.909 0.00 0.00 36.04 2.69
1312 1314 3.996363 TCAGGTTGACGTGATGATTGAAG 59.004 43.478 0.00 0.00 36.04 3.02
1313 1315 3.125829 CAGGTTGACGTGATGATTGAAGG 59.874 47.826 0.00 0.00 33.92 3.46
1314 1316 3.074412 GGTTGACGTGATGATTGAAGGT 58.926 45.455 0.00 0.00 0.00 3.50
1579 1603 1.954362 TTTGGTGCATATTGGGCGGC 61.954 55.000 0.00 0.00 0.00 6.53
1653 1677 0.250513 GGAGCGGTCAGAGTGGATTT 59.749 55.000 17.59 0.00 0.00 2.17
1948 1972 0.112412 AAATTTGGCGAGGACCCAGT 59.888 50.000 0.00 0.00 33.13 4.00
2246 2282 4.028490 GGGACCGGGTGATGTGCA 62.028 66.667 3.30 0.00 0.00 4.57
2270 2306 3.790437 CAGCCTGGATCCGGTGCT 61.790 66.667 23.50 23.50 32.00 4.40
2356 2392 2.171237 CCTGCCCATCAGATAGTTGTGA 59.829 50.000 0.00 0.00 45.72 3.58
2475 2517 1.152398 GATTCCTGGGGCCATGCAT 60.152 57.895 4.39 0.00 0.00 3.96
2481 2523 2.367586 CTGGGGCCATGCATCCAGAT 62.368 60.000 21.96 0.00 46.49 2.90
2497 2539 2.045132 ATGTGGGGAGGGATGGCT 59.955 61.111 0.00 0.00 0.00 4.75
2561 2603 0.599728 CTGATTAGCTCGGAGCCTGC 60.600 60.000 25.49 13.40 43.77 4.85
2576 2618 1.973281 CTGCTGCCCGGAACAATGT 60.973 57.895 0.73 0.00 0.00 2.71
2577 2619 2.203972 CTGCTGCCCGGAACAATGTG 62.204 60.000 0.73 0.00 0.00 3.21
2587 2629 2.229792 GGAACAATGTGCTGGAGTTGA 58.770 47.619 0.00 0.00 0.00 3.18
2631 2673 3.927555 CAAGGAGGAACTTGCGGTA 57.072 52.632 0.00 0.00 41.55 4.02
2645 2687 4.336993 ACTTGCGGTAAACAACATCAAGAA 59.663 37.500 12.43 0.00 39.42 2.52
2684 2727 1.824852 CAAGAAATTAGCCCCACCACC 59.175 52.381 0.00 0.00 0.00 4.61
2838 2882 0.613012 AGACCCTGGGCTTTGATTGC 60.613 55.000 14.08 0.00 0.00 3.56
2997 3045 2.237066 CGACGCGATGGCAATAGCA 61.237 57.895 15.93 0.00 44.61 3.49
3017 3065 0.813184 TAGAGGAGTTGGCGGTTACG 59.187 55.000 0.00 0.00 44.63 3.18
3195 3243 3.660865 AGGTGGTCGATCAGTTTGTAAC 58.339 45.455 0.00 0.00 0.00 2.50
3266 3314 4.164796 TCACCAAGATGCATCTATGGAGTT 59.835 41.667 37.45 24.90 37.92 3.01
3323 3371 0.658829 CTTGTAGATCGCGAGCGGAG 60.659 60.000 19.77 11.34 40.25 4.63
3449 3498 0.179158 GCGACGTCTCCTCCTTCTTC 60.179 60.000 14.70 0.00 0.00 2.87
3611 3671 1.078143 CTGTAGGTTGCTGCCCTCC 60.078 63.158 0.44 0.00 33.35 4.30
3985 4049 2.334946 CGGAACCTCCCGTGACGTA 61.335 63.158 3.64 0.00 44.23 3.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
197 198 9.733556 ATGGAATTAGTAGACATTGTTGTACAA 57.266 29.630 3.59 3.59 42.95 2.41
248 249 9.300681 TCACAGAATTTCAAAATGATCCTTACT 57.699 29.630 0.00 0.00 0.00 2.24
331 333 8.526978 TGGTTTGTTGAATTATATTGCTAGCAA 58.473 29.630 31.05 31.05 40.47 3.91
503 505 4.887748 AGGCCGTATCATGAGAACATAAG 58.112 43.478 0.09 0.00 35.09 1.73
517 519 1.322442 GTCGTAGGGTTAGGCCGTAT 58.678 55.000 0.00 0.00 39.49 3.06
544 546 8.417273 TCTCCGGTTGATATATTCAAGACATA 57.583 34.615 0.00 0.00 44.89 2.29
788 790 3.126879 CAATGCGCCGGAGCTCAA 61.127 61.111 30.49 11.70 37.25 3.02
956 958 0.827368 GATCTCCAAGGAAGACGGCT 59.173 55.000 0.00 0.00 0.00 5.52
968 970 2.757314 CTCTACAGCACACAGATCTCCA 59.243 50.000 0.00 0.00 0.00 3.86
985 987 0.924090 TCCATGTCCTCCGACCTCTA 59.076 55.000 0.00 0.00 38.32 2.43
1093 1095 1.530013 ATGCCCAACTGAGCTGCAAC 61.530 55.000 1.02 0.00 35.30 4.17
1262 1264 0.037326 CAACCGAGAAGTAGCCTGCA 60.037 55.000 0.00 0.00 0.00 4.41
1294 1296 3.498397 ACACCTTCAATCATCACGTCAAC 59.502 43.478 0.00 0.00 0.00 3.18
1295 1297 3.498018 CACACCTTCAATCATCACGTCAA 59.502 43.478 0.00 0.00 0.00 3.18
1296 1298 3.066380 CACACCTTCAATCATCACGTCA 58.934 45.455 0.00 0.00 0.00 4.35
1297 1299 2.159653 GCACACCTTCAATCATCACGTC 60.160 50.000 0.00 0.00 0.00 4.34
1298 1300 1.806542 GCACACCTTCAATCATCACGT 59.193 47.619 0.00 0.00 0.00 4.49
1299 1301 1.131126 GGCACACCTTCAATCATCACG 59.869 52.381 0.00 0.00 0.00 4.35
1300 1302 2.161855 TGGCACACCTTCAATCATCAC 58.838 47.619 0.00 0.00 36.63 3.06
1301 1303 2.583024 TGGCACACCTTCAATCATCA 57.417 45.000 0.00 0.00 36.63 3.07
1653 1677 0.827925 AGCCACGAGAACTGTCTGGA 60.828 55.000 0.00 0.00 33.97 3.86
1860 1884 4.711949 ACCAAGCCTGAGCGCTGG 62.712 66.667 18.48 13.04 46.63 4.85
1887 1911 1.392510 GTCGTGGTCGCAAAGTTATCC 59.607 52.381 0.00 0.00 36.96 2.59
1889 1913 1.435577 GGTCGTGGTCGCAAAGTTAT 58.564 50.000 0.00 0.00 36.96 1.89
1948 1972 0.911769 CTGGTGGCTAGTGATCCCAA 59.088 55.000 0.00 0.00 0.00 4.12
1954 1978 1.306141 CCCTCCTGGTGGCTAGTGA 60.306 63.158 9.33 0.00 0.00 3.41
2059 2083 1.002134 CCACTGCCCGAACCTGATT 60.002 57.895 0.00 0.00 0.00 2.57
2246 2282 2.679716 GATCCAGGCTGGCTGGTT 59.320 61.111 38.94 33.58 42.35 3.67
2356 2392 3.388841 GGACTGGTCGTGTCCCAT 58.611 61.111 1.76 0.00 46.01 4.00
2390 2432 2.711311 CATGCAACAGATCCGCGG 59.289 61.111 22.12 22.12 0.00 6.46
2475 2517 0.695462 CATCCCTCCCCACATCTGGA 60.695 60.000 0.00 0.00 40.55 3.86
2481 2523 2.692368 GAGCCATCCCTCCCCACA 60.692 66.667 0.00 0.00 0.00 4.17
2497 2539 0.039798 GTAGTCACGTCGCCAACAGA 60.040 55.000 0.00 0.00 0.00 3.41
2561 2603 1.973281 AGCACATTGTTCCGGGCAG 60.973 57.895 0.00 0.00 0.00 4.85
2576 2618 1.675714 CCGTAGCATTCAACTCCAGCA 60.676 52.381 0.00 0.00 0.00 4.41
2577 2619 1.009829 CCGTAGCATTCAACTCCAGC 58.990 55.000 0.00 0.00 0.00 4.85
2587 2629 0.321298 AAACGTGCCTCCGTAGCATT 60.321 50.000 0.00 0.00 43.29 3.56
2631 2673 7.414319 CCAGCACAAAAATTCTTGATGTTGTTT 60.414 33.333 0.00 0.00 29.10 2.83
2645 2687 2.309613 TGAGCAGACCAGCACAAAAAT 58.690 42.857 0.00 0.00 36.85 1.82
2838 2882 1.676529 TCAGAGACCGCTAAATCCTCG 59.323 52.381 0.00 0.00 0.00 4.63
2934 2978 2.621556 AAGGGATAGCCTTGCCAAAA 57.378 45.000 0.00 0.00 0.00 2.44
2997 3045 1.407979 CGTAACCGCCAACTCCTCTAT 59.592 52.381 0.00 0.00 0.00 1.98
3017 3065 3.235369 GGAGAGCCTCCCATGTCC 58.765 66.667 9.46 0.00 44.36 4.02
3195 3243 3.587923 ACGATTCCCAACAATTGCATTG 58.412 40.909 5.05 3.56 45.59 2.82
3266 3314 1.829222 CCTTCCCCTCGTTGCTAGTAA 59.171 52.381 0.00 0.00 0.00 2.24
3323 3371 2.423185 TCATCCACGTTCATTGGAATGC 59.577 45.455 0.00 0.00 46.37 3.56
3324 3372 3.485711 CGTCATCCACGTTCATTGGAATG 60.486 47.826 0.00 0.00 46.37 2.67
3325 3373 2.677836 CGTCATCCACGTTCATTGGAAT 59.322 45.455 0.00 0.00 46.37 3.01
3449 3498 1.076485 CCTTCCCCCTTGCTGGATG 60.076 63.158 0.00 0.00 38.35 3.51
3804 3868 0.178990 GTGGGCTGAAAGTGGAAGGT 60.179 55.000 0.00 0.00 35.30 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.