Multiple sequence alignment - TraesCS1D01G186000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G186000 chr1D 100.000 5235 0 0 1 5235 256998046 256992812 0.000000e+00 9668.0
1 TraesCS1D01G186000 chr1A 97.664 1755 37 2 1554 3308 330743019 330741269 0.000000e+00 3011.0
2 TraesCS1D01G186000 chr1A 95.638 1238 48 5 3999 5235 330729113 330727881 0.000000e+00 1982.0
3 TraesCS1D01G186000 chr1A 93.621 1113 48 8 475 1567 330745603 330744494 0.000000e+00 1640.0
4 TraesCS1D01G186000 chr1A 97.881 708 9 3 3297 4003 330741129 330740427 0.000000e+00 1219.0
5 TraesCS1D01G186000 chr1A 94.904 157 3 5 316 467 330752092 330751936 1.880000e-59 241.0
6 TraesCS1D01G186000 chr1A 95.327 107 5 0 131 237 330765214 330765108 2.510000e-38 171.0
7 TraesCS1D01G186000 chr1A 89.706 68 7 0 186 253 590673286 590673219 2.600000e-13 87.9
8 TraesCS1D01G186000 chr1B 97.288 1180 31 1 2195 3373 356221206 356222385 0.000000e+00 2001.0
9 TraesCS1D01G186000 chr1B 97.143 945 20 5 3369 4309 356224431 356225372 0.000000e+00 1589.0
10 TraesCS1D01G186000 chr1B 94.070 742 36 5 977 1710 356213898 356214639 0.000000e+00 1120.0
11 TraesCS1D01G186000 chr1B 94.409 626 22 6 4334 4959 356225365 356225977 0.000000e+00 950.0
12 TraesCS1D01G186000 chr1B 91.653 623 38 5 364 984 356213153 356213763 0.000000e+00 850.0
13 TraesCS1D01G186000 chr1B 97.342 489 9 2 1706 2193 356220556 356221041 0.000000e+00 828.0
14 TraesCS1D01G186000 chr1B 97.826 322 7 0 4914 5235 356225975 356226296 1.650000e-154 556.0
15 TraesCS1D01G186000 chrUn 98.400 125 2 0 5 129 86511394 86511518 2.450000e-53 220.0
16 TraesCS1D01G186000 chrUn 98.400 125 2 0 5 129 170985547 170985671 2.450000e-53 220.0
17 TraesCS1D01G186000 chrUn 98.400 125 2 0 5 129 171053173 171053049 2.450000e-53 220.0
18 TraesCS1D01G186000 chrUn 98.400 125 2 0 5 129 251414554 251414678 2.450000e-53 220.0
19 TraesCS1D01G186000 chrUn 98.400 125 2 0 5 129 264055051 264055175 2.450000e-53 220.0
20 TraesCS1D01G186000 chrUn 98.400 125 2 0 5 129 266524981 266525105 2.450000e-53 220.0
21 TraesCS1D01G186000 chrUn 98.400 125 2 0 5 129 439483320 439483444 2.450000e-53 220.0
22 TraesCS1D01G186000 chr6D 98.400 125 2 0 5 129 124527039 124526915 2.450000e-53 220.0
23 TraesCS1D01G186000 chr6D 98.400 125 2 0 5 129 458907694 458907570 2.450000e-53 220.0
24 TraesCS1D01G186000 chr7D 83.125 160 27 0 128 287 613211557 613211716 4.220000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G186000 chr1D 256992812 256998046 5234 True 9668.000000 9668 100.000000 1 5235 1 chr1D.!!$R1 5234
1 TraesCS1D01G186000 chr1A 330727881 330729113 1232 True 1982.000000 1982 95.638000 3999 5235 1 chr1A.!!$R1 1236
2 TraesCS1D01G186000 chr1A 330740427 330745603 5176 True 1956.666667 3011 96.388667 475 4003 3 chr1A.!!$R5 3528
3 TraesCS1D01G186000 chr1B 356220556 356226296 5740 False 1184.800000 2001 96.801600 1706 5235 5 chr1B.!!$F2 3529
4 TraesCS1D01G186000 chr1B 356213153 356214639 1486 False 985.000000 1120 92.861500 364 1710 2 chr1B.!!$F1 1346

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
235 236 0.037590 ATGGCCGGCAGAAACACTAA 59.962 50.000 30.85 0.00 0.00 2.24 F
1221 1376 0.110373 GGTCGGTAAGTGCGCAAAAG 60.110 55.000 14.00 0.36 0.00 2.27 F
1916 3568 1.683385 GCCCCTAAACATGGAAGATGC 59.317 52.381 0.00 0.00 0.00 3.91 F
2771 4588 1.228552 AAGACCCATGCTGCGGTTT 60.229 52.632 0.00 0.00 30.56 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1624 3276 0.733729 GCGACTTAGAGAGGAGCGAA 59.266 55.000 0.00 0.0 0.00 4.70 R
2181 3834 8.948631 ACTTAAACATATATATCTGGATGCCG 57.051 34.615 3.44 0.0 0.00 5.69 R
3546 7567 2.618816 GGCTGATTGTGGGAGATGTGAA 60.619 50.000 0.00 0.0 0.00 3.18 R
4279 8302 1.003118 TGTGTGTGCTTGAGGATACCC 59.997 52.381 0.00 0.0 37.17 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.854557 TCCACATGATGAATTTCTCTTACTG 57.145 36.000 0.00 0.00 0.00 2.74
25 26 6.317140 TCCACATGATGAATTTCTCTTACTGC 59.683 38.462 0.00 0.00 0.00 4.40
26 27 6.318144 CCACATGATGAATTTCTCTTACTGCT 59.682 38.462 0.00 0.00 0.00 4.24
27 28 7.148120 CCACATGATGAATTTCTCTTACTGCTT 60.148 37.037 0.00 0.00 0.00 3.91
28 29 7.696872 CACATGATGAATTTCTCTTACTGCTTG 59.303 37.037 0.00 0.00 0.00 4.01
29 30 6.748333 TGATGAATTTCTCTTACTGCTTGG 57.252 37.500 0.00 0.00 0.00 3.61
30 31 6.240894 TGATGAATTTCTCTTACTGCTTGGT 58.759 36.000 0.00 0.00 0.00 3.67
31 32 6.716628 TGATGAATTTCTCTTACTGCTTGGTT 59.283 34.615 0.00 0.00 0.00 3.67
32 33 6.560253 TGAATTTCTCTTACTGCTTGGTTC 57.440 37.500 0.00 0.00 0.00 3.62
33 34 5.473504 TGAATTTCTCTTACTGCTTGGTTCC 59.526 40.000 0.00 0.00 0.00 3.62
34 35 2.743636 TCTCTTACTGCTTGGTTCCG 57.256 50.000 0.00 0.00 0.00 4.30
35 36 1.079503 CTCTTACTGCTTGGTTCCGC 58.920 55.000 0.00 0.00 0.00 5.54
36 37 0.394938 TCTTACTGCTTGGTTCCGCA 59.605 50.000 0.00 0.00 34.54 5.69
37 38 1.003118 TCTTACTGCTTGGTTCCGCAT 59.997 47.619 0.00 0.00 35.32 4.73
38 39 1.812571 CTTACTGCTTGGTTCCGCATT 59.187 47.619 0.00 0.00 35.32 3.56
39 40 1.164411 TACTGCTTGGTTCCGCATTG 58.836 50.000 0.00 0.00 35.32 2.82
40 41 1.213537 CTGCTTGGTTCCGCATTGG 59.786 57.895 0.00 0.00 35.32 3.16
52 53 4.599047 TCCGCATTGGATTTTGAAAACT 57.401 36.364 0.00 0.00 43.74 2.66
53 54 4.954875 TCCGCATTGGATTTTGAAAACTT 58.045 34.783 0.00 0.00 43.74 2.66
54 55 5.363939 TCCGCATTGGATTTTGAAAACTTT 58.636 33.333 0.00 0.00 43.74 2.66
55 56 5.819901 TCCGCATTGGATTTTGAAAACTTTT 59.180 32.000 0.00 0.00 43.74 2.27
56 57 5.908499 CCGCATTGGATTTTGAAAACTTTTG 59.092 36.000 0.00 0.00 42.00 2.44
57 58 6.458070 CCGCATTGGATTTTGAAAACTTTTGT 60.458 34.615 0.00 0.00 42.00 2.83
58 59 6.966066 CGCATTGGATTTTGAAAACTTTTGTT 59.034 30.769 0.00 0.00 45.94 2.83
73 74 6.827586 ACTTTTGTTTAGAAAGTGGTGTCA 57.172 33.333 1.80 0.00 43.58 3.58
74 75 6.617879 ACTTTTGTTTAGAAAGTGGTGTCAC 58.382 36.000 1.80 0.00 43.58 3.67
75 76 8.047041 AACTTTTGTTTAGAAAGTGGTGTCACG 61.047 37.037 3.31 0.00 44.24 4.35
82 83 3.856508 GTGGTGTCACGATCGTGG 58.143 61.111 39.34 24.73 45.43 4.94
83 84 1.736645 GTGGTGTCACGATCGTGGG 60.737 63.158 39.34 21.66 45.43 4.61
84 85 2.125673 GGTGTCACGATCGTGGGG 60.126 66.667 39.34 20.96 45.43 4.96
85 86 2.642254 GGTGTCACGATCGTGGGGA 61.642 63.158 39.34 23.36 45.43 4.81
86 87 1.515954 GTGTCACGATCGTGGGGAT 59.484 57.895 39.34 8.15 45.43 3.85
87 88 0.527817 GTGTCACGATCGTGGGGATC 60.528 60.000 39.34 25.73 46.70 3.36
96 97 2.346766 TCGTGGGGATCAAATGGATG 57.653 50.000 0.00 0.00 36.00 3.51
97 98 1.133823 TCGTGGGGATCAAATGGATGG 60.134 52.381 0.00 0.00 36.00 3.51
98 99 1.410083 CGTGGGGATCAAATGGATGGT 60.410 52.381 0.00 0.00 36.00 3.55
99 100 2.750814 GTGGGGATCAAATGGATGGTT 58.249 47.619 0.00 0.00 36.00 3.67
100 101 2.695147 GTGGGGATCAAATGGATGGTTC 59.305 50.000 0.00 0.00 36.00 3.62
101 102 2.314247 TGGGGATCAAATGGATGGTTCA 59.686 45.455 0.00 0.00 36.00 3.18
102 103 2.961062 GGGGATCAAATGGATGGTTCAG 59.039 50.000 0.00 0.00 36.00 3.02
103 104 2.961062 GGGATCAAATGGATGGTTCAGG 59.039 50.000 0.00 0.00 36.00 3.86
104 105 3.373001 GGGATCAAATGGATGGTTCAGGA 60.373 47.826 0.00 0.00 36.00 3.86
105 106 4.280819 GGATCAAATGGATGGTTCAGGAA 58.719 43.478 0.00 0.00 36.00 3.36
106 107 4.711355 GGATCAAATGGATGGTTCAGGAAA 59.289 41.667 0.00 0.00 36.00 3.13
107 108 5.163478 GGATCAAATGGATGGTTCAGGAAAG 60.163 44.000 0.00 0.00 36.00 2.62
108 109 4.739793 TCAAATGGATGGTTCAGGAAAGT 58.260 39.130 0.00 0.00 0.00 2.66
109 110 4.766891 TCAAATGGATGGTTCAGGAAAGTC 59.233 41.667 0.00 0.00 0.00 3.01
110 111 4.664688 AATGGATGGTTCAGGAAAGTCT 57.335 40.909 0.00 0.00 0.00 3.24
111 112 5.779241 AATGGATGGTTCAGGAAAGTCTA 57.221 39.130 0.00 0.00 0.00 2.59
112 113 4.826274 TGGATGGTTCAGGAAAGTCTAG 57.174 45.455 0.00 0.00 0.00 2.43
113 114 4.168101 TGGATGGTTCAGGAAAGTCTAGT 58.832 43.478 0.00 0.00 0.00 2.57
114 115 4.020218 TGGATGGTTCAGGAAAGTCTAGTG 60.020 45.833 0.00 0.00 0.00 2.74
115 116 4.223032 GGATGGTTCAGGAAAGTCTAGTGA 59.777 45.833 0.00 0.00 0.00 3.41
116 117 5.280011 GGATGGTTCAGGAAAGTCTAGTGAA 60.280 44.000 0.00 0.00 0.00 3.18
117 118 5.215252 TGGTTCAGGAAAGTCTAGTGAAG 57.785 43.478 0.00 0.00 0.00 3.02
118 119 3.997681 GGTTCAGGAAAGTCTAGTGAAGC 59.002 47.826 4.18 4.18 38.16 3.86
119 120 3.577649 TCAGGAAAGTCTAGTGAAGCG 57.422 47.619 0.00 0.00 0.00 4.68
120 121 2.231478 TCAGGAAAGTCTAGTGAAGCGG 59.769 50.000 0.00 0.00 0.00 5.52
121 122 1.066787 AGGAAAGTCTAGTGAAGCGGC 60.067 52.381 0.00 0.00 0.00 6.53
122 123 1.337823 GGAAAGTCTAGTGAAGCGGCA 60.338 52.381 1.45 0.00 0.00 5.69
123 124 1.727335 GAAAGTCTAGTGAAGCGGCAC 59.273 52.381 1.45 4.11 39.05 5.01
136 137 2.028484 GGCACGGTCTGTCGACAA 59.972 61.111 20.49 7.97 42.05 3.18
137 138 2.308039 GGCACGGTCTGTCGACAAC 61.308 63.158 20.49 18.53 42.05 3.32
138 139 1.590525 GCACGGTCTGTCGACAACA 60.591 57.895 20.49 6.22 42.05 3.33
147 148 1.795768 TGTCGACAACAGATGGAAGC 58.204 50.000 17.62 0.00 32.81 3.86
148 149 1.069978 TGTCGACAACAGATGGAAGCA 59.930 47.619 17.62 0.00 32.81 3.91
149 150 1.461127 GTCGACAACAGATGGAAGCAC 59.539 52.381 11.55 0.00 0.00 4.40
150 151 0.798776 CGACAACAGATGGAAGCACC 59.201 55.000 0.00 0.00 39.54 5.01
151 152 0.798776 GACAACAGATGGAAGCACCG 59.201 55.000 0.00 0.00 42.61 4.94
152 153 1.237285 ACAACAGATGGAAGCACCGC 61.237 55.000 0.00 0.00 42.61 5.68
153 154 2.034879 AACAGATGGAAGCACCGCG 61.035 57.895 0.00 0.00 42.61 6.46
154 155 2.434884 CAGATGGAAGCACCGCGT 60.435 61.111 4.92 0.00 42.61 6.01
155 156 2.125512 AGATGGAAGCACCGCGTC 60.126 61.111 4.92 0.00 42.61 5.19
156 157 3.554692 GATGGAAGCACCGCGTCG 61.555 66.667 4.92 0.00 42.61 5.12
167 168 2.798689 CGCGTCGGAGAAGGATCA 59.201 61.111 0.00 0.00 39.69 2.92
168 169 1.138883 CGCGTCGGAGAAGGATCAA 59.861 57.895 0.00 0.00 39.69 2.57
169 170 0.457853 CGCGTCGGAGAAGGATCAAA 60.458 55.000 0.00 0.00 39.69 2.69
170 171 1.722011 GCGTCGGAGAAGGATCAAAA 58.278 50.000 0.00 0.00 39.69 2.44
171 172 1.661112 GCGTCGGAGAAGGATCAAAAG 59.339 52.381 0.00 0.00 39.69 2.27
172 173 2.674177 GCGTCGGAGAAGGATCAAAAGA 60.674 50.000 0.00 0.00 39.69 2.52
173 174 2.924290 CGTCGGAGAAGGATCAAAAGAC 59.076 50.000 0.00 0.00 39.69 3.01
174 175 3.614150 CGTCGGAGAAGGATCAAAAGACA 60.614 47.826 0.00 0.00 39.69 3.41
175 176 4.315803 GTCGGAGAAGGATCAAAAGACAA 58.684 43.478 0.00 0.00 39.69 3.18
176 177 4.938226 GTCGGAGAAGGATCAAAAGACAAT 59.062 41.667 0.00 0.00 39.69 2.71
177 178 5.412904 GTCGGAGAAGGATCAAAAGACAATT 59.587 40.000 0.00 0.00 39.69 2.32
178 179 6.003950 TCGGAGAAGGATCAAAAGACAATTT 58.996 36.000 0.00 0.00 0.00 1.82
179 180 7.119262 GTCGGAGAAGGATCAAAAGACAATTTA 59.881 37.037 0.00 0.00 39.69 1.40
180 181 7.829211 TCGGAGAAGGATCAAAAGACAATTTAT 59.171 33.333 0.00 0.00 0.00 1.40
181 182 8.462016 CGGAGAAGGATCAAAAGACAATTTATT 58.538 33.333 0.00 0.00 0.00 1.40
182 183 9.794685 GGAGAAGGATCAAAAGACAATTTATTC 57.205 33.333 0.00 0.00 0.00 1.75
188 189 9.468532 GGATCAAAAGACAATTTATTCATAGCC 57.531 33.333 0.00 0.00 0.00 3.93
189 190 9.173939 GATCAAAAGACAATTTATTCATAGCCG 57.826 33.333 0.00 0.00 0.00 5.52
190 191 6.972328 TCAAAAGACAATTTATTCATAGCCGC 59.028 34.615 0.00 0.00 0.00 6.53
191 192 5.438761 AAGACAATTTATTCATAGCCGCC 57.561 39.130 0.00 0.00 0.00 6.13
192 193 3.498397 AGACAATTTATTCATAGCCGCCG 59.502 43.478 0.00 0.00 0.00 6.46
193 194 3.211045 ACAATTTATTCATAGCCGCCGT 58.789 40.909 0.00 0.00 0.00 5.68
194 195 3.003275 ACAATTTATTCATAGCCGCCGTG 59.997 43.478 0.00 0.00 0.00 4.94
195 196 2.605837 TTTATTCATAGCCGCCGTGA 57.394 45.000 0.00 0.00 0.00 4.35
196 197 2.605837 TTATTCATAGCCGCCGTGAA 57.394 45.000 9.65 9.65 36.42 3.18
197 198 1.860676 TATTCATAGCCGCCGTGAAC 58.139 50.000 9.47 0.00 34.98 3.18
198 199 1.151777 ATTCATAGCCGCCGTGAACG 61.152 55.000 9.47 0.00 34.98 3.95
199 200 3.925238 CATAGCCGCCGTGAACGC 61.925 66.667 0.00 0.00 38.18 4.84
231 232 2.676121 CCATGGCCGGCAGAAACA 60.676 61.111 30.85 17.34 0.00 2.83
232 233 2.568090 CATGGCCGGCAGAAACAC 59.432 61.111 30.85 9.47 0.00 3.32
233 234 1.973281 CATGGCCGGCAGAAACACT 60.973 57.895 30.85 3.92 0.00 3.55
234 235 0.676466 CATGGCCGGCAGAAACACTA 60.676 55.000 30.85 2.36 0.00 2.74
235 236 0.037590 ATGGCCGGCAGAAACACTAA 59.962 50.000 30.85 0.00 0.00 2.24
236 237 0.605319 TGGCCGGCAGAAACACTAAG 60.605 55.000 30.85 0.00 0.00 2.18
237 238 1.502190 GCCGGCAGAAACACTAAGC 59.498 57.895 24.80 0.00 0.00 3.09
238 239 1.234615 GCCGGCAGAAACACTAAGCA 61.235 55.000 24.80 0.00 0.00 3.91
239 240 1.234821 CCGGCAGAAACACTAAGCAA 58.765 50.000 0.00 0.00 0.00 3.91
240 241 1.069227 CCGGCAGAAACACTAAGCAAC 60.069 52.381 0.00 0.00 0.00 4.17
241 242 1.069227 CGGCAGAAACACTAAGCAACC 60.069 52.381 0.00 0.00 0.00 3.77
242 243 2.230660 GGCAGAAACACTAAGCAACCT 58.769 47.619 0.00 0.00 0.00 3.50
243 244 3.408634 GGCAGAAACACTAAGCAACCTA 58.591 45.455 0.00 0.00 0.00 3.08
244 245 3.437049 GGCAGAAACACTAAGCAACCTAG 59.563 47.826 0.00 0.00 0.00 3.02
245 246 3.120165 GCAGAAACACTAAGCAACCTAGC 60.120 47.826 0.00 0.00 0.00 3.42
246 247 3.437049 CAGAAACACTAAGCAACCTAGCC 59.563 47.826 0.00 0.00 34.23 3.93
247 248 3.328050 AGAAACACTAAGCAACCTAGCCT 59.672 43.478 0.00 0.00 34.23 4.58
248 249 4.530946 AGAAACACTAAGCAACCTAGCCTA 59.469 41.667 0.00 0.00 34.23 3.93
249 250 4.903045 AACACTAAGCAACCTAGCCTAA 57.097 40.909 0.00 0.00 34.23 2.69
250 251 4.903045 ACACTAAGCAACCTAGCCTAAA 57.097 40.909 0.00 0.00 34.23 1.85
251 252 5.437191 ACACTAAGCAACCTAGCCTAAAT 57.563 39.130 0.00 0.00 34.23 1.40
252 253 5.816682 ACACTAAGCAACCTAGCCTAAATT 58.183 37.500 0.00 0.00 34.23 1.82
253 254 6.954232 ACACTAAGCAACCTAGCCTAAATTA 58.046 36.000 0.00 0.00 34.23 1.40
254 255 6.822170 ACACTAAGCAACCTAGCCTAAATTAC 59.178 38.462 0.00 0.00 34.23 1.89
255 256 7.048512 CACTAAGCAACCTAGCCTAAATTACT 58.951 38.462 0.00 0.00 34.23 2.24
256 257 7.011482 CACTAAGCAACCTAGCCTAAATTACTG 59.989 40.741 0.00 0.00 34.23 2.74
257 258 4.200092 AGCAACCTAGCCTAAATTACTGC 58.800 43.478 0.00 0.00 34.23 4.40
258 259 4.080299 AGCAACCTAGCCTAAATTACTGCT 60.080 41.667 0.00 0.00 37.84 4.24
259 260 5.130477 AGCAACCTAGCCTAAATTACTGCTA 59.870 40.000 0.00 0.00 34.81 3.49
260 261 5.236695 GCAACCTAGCCTAAATTACTGCTAC 59.763 44.000 0.00 0.00 35.34 3.58
261 262 6.346096 CAACCTAGCCTAAATTACTGCTACA 58.654 40.000 0.00 0.00 35.34 2.74
262 263 5.915175 ACCTAGCCTAAATTACTGCTACAC 58.085 41.667 0.00 0.00 35.34 2.90
263 264 5.424252 ACCTAGCCTAAATTACTGCTACACA 59.576 40.000 0.00 0.00 35.34 3.72
264 265 5.753921 CCTAGCCTAAATTACTGCTACACAC 59.246 44.000 0.00 0.00 35.34 3.82
265 266 4.181578 AGCCTAAATTACTGCTACACACG 58.818 43.478 0.00 0.00 30.97 4.49
266 267 3.242316 GCCTAAATTACTGCTACACACGC 60.242 47.826 0.00 0.00 0.00 5.34
267 268 3.308866 CCTAAATTACTGCTACACACGCC 59.691 47.826 0.00 0.00 0.00 5.68
268 269 1.355971 AATTACTGCTACACACGCCG 58.644 50.000 0.00 0.00 0.00 6.46
269 270 1.082117 ATTACTGCTACACACGCCGC 61.082 55.000 0.00 0.00 0.00 6.53
270 271 2.423290 TTACTGCTACACACGCCGCA 62.423 55.000 0.00 0.00 0.00 5.69
271 272 3.777925 CTGCTACACACGCCGCAC 61.778 66.667 0.00 0.00 0.00 5.34
325 326 4.698625 AGGTCGTCGGGGAGGCTT 62.699 66.667 0.00 0.00 0.00 4.35
326 327 4.452733 GGTCGTCGGGGAGGCTTG 62.453 72.222 0.00 0.00 0.00 4.01
330 331 4.329545 GTCGGGGAGGCTTGCACA 62.330 66.667 0.00 0.00 0.00 4.57
331 332 3.329889 TCGGGGAGGCTTGCACAT 61.330 61.111 0.00 0.00 0.00 3.21
332 333 3.136123 CGGGGAGGCTTGCACATG 61.136 66.667 0.00 0.00 0.00 3.21
333 334 2.036256 GGGGAGGCTTGCACATGT 59.964 61.111 0.00 0.00 0.00 3.21
334 335 2.345760 GGGGAGGCTTGCACATGTG 61.346 63.158 21.83 21.83 0.00 3.21
335 336 1.303561 GGGAGGCTTGCACATGTGA 60.304 57.895 29.80 11.67 0.00 3.58
336 337 0.682209 GGGAGGCTTGCACATGTGAT 60.682 55.000 29.80 6.90 0.00 3.06
337 338 0.737219 GGAGGCTTGCACATGTGATC 59.263 55.000 29.80 13.05 0.00 2.92
338 339 1.681166 GGAGGCTTGCACATGTGATCT 60.681 52.381 29.80 16.38 0.00 2.75
339 340 1.400846 GAGGCTTGCACATGTGATCTG 59.599 52.381 29.80 15.50 0.00 2.90
340 341 1.171308 GGCTTGCACATGTGATCTGT 58.829 50.000 29.80 0.00 0.00 3.41
341 342 1.542915 GGCTTGCACATGTGATCTGTT 59.457 47.619 29.80 0.00 0.00 3.16
342 343 2.592194 GCTTGCACATGTGATCTGTTG 58.408 47.619 29.80 11.56 0.00 3.33
343 344 2.670229 GCTTGCACATGTGATCTGTTGG 60.670 50.000 29.80 10.08 0.00 3.77
344 345 2.565046 TGCACATGTGATCTGTTGGA 57.435 45.000 29.80 0.00 0.00 3.53
345 346 2.861274 TGCACATGTGATCTGTTGGAA 58.139 42.857 29.80 0.00 0.00 3.53
346 347 2.815503 TGCACATGTGATCTGTTGGAAG 59.184 45.455 29.80 0.00 0.00 3.46
347 348 3.076621 GCACATGTGATCTGTTGGAAGA 58.923 45.455 29.80 0.00 0.00 2.87
348 349 3.503363 GCACATGTGATCTGTTGGAAGAA 59.497 43.478 29.80 0.00 0.00 2.52
349 350 4.022935 GCACATGTGATCTGTTGGAAGAAA 60.023 41.667 29.80 0.00 0.00 2.52
350 351 5.336213 GCACATGTGATCTGTTGGAAGAAAT 60.336 40.000 29.80 0.00 0.00 2.17
351 352 6.090783 CACATGTGATCTGTTGGAAGAAATG 58.909 40.000 21.64 0.00 0.00 2.32
352 353 6.005823 ACATGTGATCTGTTGGAAGAAATGA 58.994 36.000 0.00 0.00 0.00 2.57
353 354 5.947228 TGTGATCTGTTGGAAGAAATGAC 57.053 39.130 0.00 0.00 0.00 3.06
354 355 4.452114 TGTGATCTGTTGGAAGAAATGACG 59.548 41.667 0.00 0.00 0.00 4.35
355 356 4.002982 TGATCTGTTGGAAGAAATGACGG 58.997 43.478 0.00 0.00 0.00 4.79
356 357 2.151202 TCTGTTGGAAGAAATGACGGC 58.849 47.619 0.00 0.00 0.00 5.68
357 358 2.154462 CTGTTGGAAGAAATGACGGCT 58.846 47.619 0.00 0.00 0.00 5.52
358 359 3.007506 TCTGTTGGAAGAAATGACGGCTA 59.992 43.478 0.00 0.00 0.00 3.93
359 360 3.745799 TGTTGGAAGAAATGACGGCTAA 58.254 40.909 0.00 0.00 0.00 3.09
360 361 4.331968 TGTTGGAAGAAATGACGGCTAAT 58.668 39.130 0.00 0.00 0.00 1.73
361 362 4.155826 TGTTGGAAGAAATGACGGCTAATG 59.844 41.667 0.00 0.00 0.00 1.90
362 363 2.682856 TGGAAGAAATGACGGCTAATGC 59.317 45.455 0.00 0.00 38.76 3.56
403 404 0.716108 CACTCCGTTTCATCGTGAGC 59.284 55.000 0.00 0.00 34.24 4.26
417 418 2.507324 GAGCACGCTCTTCCCGTC 60.507 66.667 11.81 0.00 39.80 4.79
423 424 1.069906 CACGCTCTTCCCGTCAAAAAG 60.070 52.381 0.00 0.00 36.69 2.27
426 427 2.289547 CGCTCTTCCCGTCAAAAAGAAA 59.710 45.455 0.00 0.00 0.00 2.52
427 428 3.242936 CGCTCTTCCCGTCAAAAAGAAAA 60.243 43.478 0.00 0.00 0.00 2.29
428 429 4.678622 GCTCTTCCCGTCAAAAAGAAAAA 58.321 39.130 0.00 0.00 0.00 1.94
429 430 4.740205 GCTCTTCCCGTCAAAAAGAAAAAG 59.260 41.667 0.00 0.00 0.00 2.27
430 431 5.449999 GCTCTTCCCGTCAAAAAGAAAAAGA 60.450 40.000 0.00 0.00 0.00 2.52
431 432 6.518208 TCTTCCCGTCAAAAAGAAAAAGAA 57.482 33.333 0.00 0.00 0.00 2.52
432 433 6.926313 TCTTCCCGTCAAAAAGAAAAAGAAA 58.074 32.000 0.00 0.00 0.00 2.52
433 434 7.379750 TCTTCCCGTCAAAAAGAAAAAGAAAA 58.620 30.769 0.00 0.00 0.00 2.29
434 435 7.873505 TCTTCCCGTCAAAAAGAAAAAGAAAAA 59.126 29.630 0.00 0.00 0.00 1.94
435 436 7.354025 TCCCGTCAAAAAGAAAAAGAAAAAC 57.646 32.000 0.00 0.00 0.00 2.43
437 438 7.441458 TCCCGTCAAAAAGAAAAAGAAAAACAA 59.559 29.630 0.00 0.00 0.00 2.83
438 439 7.744276 CCCGTCAAAAAGAAAAAGAAAAACAAG 59.256 33.333 0.00 0.00 0.00 3.16
440 441 9.856803 CGTCAAAAAGAAAAAGAAAAACAAGAA 57.143 25.926 0.00 0.00 0.00 2.52
442 443 9.856803 TCAAAAAGAAAAAGAAAAACAAGAACG 57.143 25.926 0.00 0.00 0.00 3.95
670 678 4.760047 TGCGAGGAAGAAGCGGGC 62.760 66.667 0.00 0.00 0.00 6.13
690 698 2.032528 CAGCGGGCAGTGAAAGGA 59.967 61.111 0.00 0.00 0.00 3.36
766 774 1.754234 CCTTCCCCAAATCTGGCCG 60.754 63.158 0.00 0.00 41.99 6.13
776 784 2.882761 CAAATCTGGCCGACATGATGAT 59.117 45.455 0.00 0.00 0.00 2.45
800 808 1.623811 GTGGCTTGGAGTGAAGACCTA 59.376 52.381 0.00 0.00 28.71 3.08
804 812 3.307762 GGCTTGGAGTGAAGACCTAATGT 60.308 47.826 0.00 0.00 0.00 2.71
828 836 1.006043 TCGGAGATGAAGGTGACCTCT 59.994 52.381 3.76 0.00 30.89 3.69
1014 1168 2.362736 TCTGCAATGAGCTTGGATGAC 58.637 47.619 0.00 0.00 45.94 3.06
1108 1262 3.873910 ACCATTAGTGTGATTCTTCCGG 58.126 45.455 0.00 0.00 0.00 5.14
1199 1354 2.408050 GGCATCATCACCGAGTATGAC 58.592 52.381 0.00 0.00 35.06 3.06
1221 1376 0.110373 GGTCGGTAAGTGCGCAAAAG 60.110 55.000 14.00 0.36 0.00 2.27
1268 1423 4.087892 GAGGAGGGCAAGCTGCGA 62.088 66.667 0.00 0.00 46.21 5.10
1288 1443 4.575885 CGAGACCCAAATCAGAAGGTAAA 58.424 43.478 0.00 0.00 31.10 2.01
1312 1467 3.624326 TTGCACCTCTTGTTTCATTCG 57.376 42.857 0.00 0.00 0.00 3.34
1316 1471 4.142271 TGCACCTCTTGTTTCATTCGTTTT 60.142 37.500 0.00 0.00 0.00 2.43
1317 1472 4.803613 GCACCTCTTGTTTCATTCGTTTTT 59.196 37.500 0.00 0.00 0.00 1.94
1585 3237 4.236935 GTCTTGCTCTCACTTCTTCTCTG 58.763 47.826 0.00 0.00 0.00 3.35
1624 3276 4.227134 CACCTCTATGCCGCCGCT 62.227 66.667 0.00 0.00 35.36 5.52
1674 3326 4.216902 TGCATGTTGTCATCTTCTCCAAAG 59.783 41.667 0.00 0.00 31.15 2.77
1916 3568 1.683385 GCCCCTAAACATGGAAGATGC 59.317 52.381 0.00 0.00 0.00 3.91
1920 3572 4.447616 CCCCTAAACATGGAAGATGCCATA 60.448 45.833 0.00 0.00 46.70 2.74
1921 3573 4.520492 CCCTAAACATGGAAGATGCCATAC 59.480 45.833 0.00 0.00 46.70 2.39
2014 3666 9.965902 ACAAAATTATAGGGAGAAGCCTATATG 57.034 33.333 0.00 0.00 33.32 1.78
2119 3772 1.986882 CCAGTGCTTTCTGGTCCTTT 58.013 50.000 12.63 0.00 46.92 3.11
2223 4039 7.936584 TGTTTAAGTTTCGAATGGAAATGACT 58.063 30.769 0.00 0.00 45.80 3.41
2464 4281 3.569277 TGAACCAACAACACCATGAGATG 59.431 43.478 0.00 0.00 0.00 2.90
2553 4370 6.310224 GCACAAAATAAAGGTAAATGCACGAT 59.690 34.615 0.00 0.00 0.00 3.73
2739 4556 6.369615 AGCAAATCAGGATTTCCGAAAATTTG 59.630 34.615 16.69 16.69 38.84 2.32
2751 4568 4.153475 TCCGAAAATTTGAAGGACACGATC 59.847 41.667 5.69 0.00 0.00 3.69
2771 4588 1.228552 AAGACCCATGCTGCGGTTT 60.229 52.632 0.00 0.00 30.56 3.27
2835 4652 4.800784 TGTCACATCAAGCATCAAACATG 58.199 39.130 0.00 0.00 0.00 3.21
2992 4809 4.240881 AGGCATCATGTAACATCCAAGT 57.759 40.909 0.00 0.00 0.00 3.16
3453 7474 6.313658 TCGTATGCTTGTTATATCATCATGCC 59.686 38.462 0.00 1.97 33.39 4.40
3546 7567 3.258622 GCGAGGTTATAGGGCTGATTACT 59.741 47.826 0.00 0.00 0.00 2.24
3587 7608 8.441311 TCAGCCATTTTATCTATCTCCATAGT 57.559 34.615 0.00 0.00 34.54 2.12
3931 7952 4.782019 TTTGTGCAATATTGACCAGACC 57.218 40.909 19.73 0.02 0.00 3.85
3960 7981 5.045213 TGCAAGACTGGGATCCAACTAATTA 60.045 40.000 15.23 0.00 30.80 1.40
4003 8024 2.412325 GCACAAAACTATTGGTCCGACG 60.412 50.000 0.00 0.00 0.00 5.12
4035 8056 7.804843 AAATTGAGCAAAAATTGAATGGACA 57.195 28.000 0.00 0.00 0.00 4.02
4058 8079 2.158608 ACAGTTTAGAGCCTTTGCCTGT 60.159 45.455 0.00 0.00 38.69 4.00
4106 8127 9.113876 GTAACGTTAAGTTTGATCATTTGGAAG 57.886 33.333 10.11 0.00 43.86 3.46
4246 8269 2.688666 AGATGAGCTTCGGGCCCA 60.689 61.111 24.92 6.15 43.05 5.36
4279 8302 6.042777 TCAAGAGTGGATTTATTGTAGCTCG 58.957 40.000 0.00 0.00 0.00 5.03
4321 8344 8.352942 ACACATGTCTTTTCCTTTTGACTATTC 58.647 33.333 0.00 0.00 0.00 1.75
4369 8392 8.619546 CCAAATTTCTGCTATTTTTCAAAACCA 58.380 29.630 0.00 0.00 0.00 3.67
4633 8656 4.326826 TGGAGAAGAAACTTGATTCGCAT 58.673 39.130 0.00 0.00 34.46 4.73
4636 8659 5.123027 GGAGAAGAAACTTGATTCGCATTCT 59.877 40.000 0.00 0.00 34.46 2.40
4799 8822 3.386932 TTTTGCCTATGGGATTCAGCT 57.613 42.857 0.00 0.00 33.58 4.24
4800 8823 3.386932 TTTGCCTATGGGATTCAGCTT 57.613 42.857 0.00 0.00 33.58 3.74
4837 8860 6.015010 GCTCATACTATTCATCAGGTAGGTGT 60.015 42.308 0.00 0.00 0.00 4.16
5128 9183 5.201713 TGTGAATTAGGGATCTCGTCATC 57.798 43.478 0.00 0.00 0.00 2.92
5134 9189 5.614324 TTAGGGATCTCGTCATCACAAAT 57.386 39.130 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.317140 GCAGTAAGAGAAATTCATCATGTGGA 59.683 38.462 0.00 0.00 0.00 4.02
1 2 6.318144 AGCAGTAAGAGAAATTCATCATGTGG 59.682 38.462 0.00 0.00 0.00 4.17
2 3 7.317842 AGCAGTAAGAGAAATTCATCATGTG 57.682 36.000 0.00 0.00 0.00 3.21
3 4 7.148120 CCAAGCAGTAAGAGAAATTCATCATGT 60.148 37.037 0.00 0.00 0.00 3.21
4 5 7.148120 ACCAAGCAGTAAGAGAAATTCATCATG 60.148 37.037 0.00 0.00 0.00 3.07
5 6 6.888632 ACCAAGCAGTAAGAGAAATTCATCAT 59.111 34.615 0.00 0.00 0.00 2.45
6 7 6.240894 ACCAAGCAGTAAGAGAAATTCATCA 58.759 36.000 0.00 0.00 0.00 3.07
7 8 6.749923 ACCAAGCAGTAAGAGAAATTCATC 57.250 37.500 0.00 0.00 0.00 2.92
8 9 6.151817 GGAACCAAGCAGTAAGAGAAATTCAT 59.848 38.462 0.00 0.00 0.00 2.57
9 10 5.473504 GGAACCAAGCAGTAAGAGAAATTCA 59.526 40.000 0.00 0.00 0.00 2.57
10 11 5.390991 CGGAACCAAGCAGTAAGAGAAATTC 60.391 44.000 0.00 0.00 0.00 2.17
11 12 4.455877 CGGAACCAAGCAGTAAGAGAAATT 59.544 41.667 0.00 0.00 0.00 1.82
12 13 4.003648 CGGAACCAAGCAGTAAGAGAAAT 58.996 43.478 0.00 0.00 0.00 2.17
13 14 3.399330 CGGAACCAAGCAGTAAGAGAAA 58.601 45.455 0.00 0.00 0.00 2.52
14 15 2.870435 GCGGAACCAAGCAGTAAGAGAA 60.870 50.000 0.00 0.00 0.00 2.87
15 16 1.337823 GCGGAACCAAGCAGTAAGAGA 60.338 52.381 0.00 0.00 0.00 3.10
16 17 1.079503 GCGGAACCAAGCAGTAAGAG 58.920 55.000 0.00 0.00 0.00 2.85
17 18 0.394938 TGCGGAACCAAGCAGTAAGA 59.605 50.000 0.00 0.00 38.59 2.10
18 19 2.927004 TGCGGAACCAAGCAGTAAG 58.073 52.632 0.00 0.00 38.59 2.34
24 25 3.680156 TCCAATGCGGAACCAAGC 58.320 55.556 0.00 0.00 42.52 4.01
32 33 5.671742 AAAGTTTTCAAAATCCAATGCGG 57.328 34.783 0.00 0.00 0.00 5.69
33 34 6.485393 ACAAAAGTTTTCAAAATCCAATGCG 58.515 32.000 0.00 0.00 0.00 4.73
34 35 8.686397 AAACAAAAGTTTTCAAAATCCAATGC 57.314 26.923 0.00 0.00 0.00 3.56
43 44 9.549078 ACCACTTTCTAAACAAAAGTTTTCAAA 57.451 25.926 0.00 0.00 42.74 2.69
44 45 8.983724 CACCACTTTCTAAACAAAAGTTTTCAA 58.016 29.630 0.00 0.00 42.74 2.69
45 46 8.145122 ACACCACTTTCTAAACAAAAGTTTTCA 58.855 29.630 0.00 0.00 42.74 2.69
46 47 8.528917 ACACCACTTTCTAAACAAAAGTTTTC 57.471 30.769 0.00 0.00 42.74 2.29
47 48 8.145122 TGACACCACTTTCTAAACAAAAGTTTT 58.855 29.630 0.00 0.00 42.74 2.43
48 49 7.597369 GTGACACCACTTTCTAAACAAAAGTTT 59.403 33.333 0.00 0.00 42.74 2.66
49 50 7.088272 GTGACACCACTTTCTAAACAAAAGTT 58.912 34.615 0.00 0.00 42.74 2.66
50 51 6.617879 GTGACACCACTTTCTAAACAAAAGT 58.382 36.000 0.00 0.00 45.41 2.66
51 52 5.737290 CGTGACACCACTTTCTAAACAAAAG 59.263 40.000 0.00 0.00 41.06 2.27
52 53 5.411977 TCGTGACACCACTTTCTAAACAAAA 59.588 36.000 0.00 0.00 41.06 2.44
53 54 4.936411 TCGTGACACCACTTTCTAAACAAA 59.064 37.500 0.00 0.00 41.06 2.83
54 55 4.505808 TCGTGACACCACTTTCTAAACAA 58.494 39.130 0.00 0.00 41.06 2.83
55 56 4.126208 TCGTGACACCACTTTCTAAACA 57.874 40.909 0.00 0.00 41.06 2.83
56 57 4.143389 CGATCGTGACACCACTTTCTAAAC 60.143 45.833 7.03 0.00 41.06 2.01
57 58 3.985279 CGATCGTGACACCACTTTCTAAA 59.015 43.478 7.03 0.00 41.06 1.85
58 59 3.005050 ACGATCGTGACACCACTTTCTAA 59.995 43.478 22.06 0.00 41.06 2.10
59 60 2.555325 ACGATCGTGACACCACTTTCTA 59.445 45.455 22.06 0.00 41.06 2.10
60 61 1.340248 ACGATCGTGACACCACTTTCT 59.660 47.619 22.06 0.00 41.06 2.52
61 62 1.779569 ACGATCGTGACACCACTTTC 58.220 50.000 22.06 0.00 41.06 2.62
62 63 3.980583 ACGATCGTGACACCACTTT 57.019 47.368 22.06 0.00 41.06 2.66
75 76 2.638480 TCCATTTGATCCCCACGATC 57.362 50.000 0.00 0.00 46.70 3.69
76 77 2.489619 CCATCCATTTGATCCCCACGAT 60.490 50.000 0.00 0.00 0.00 3.73
77 78 1.133823 CCATCCATTTGATCCCCACGA 60.134 52.381 0.00 0.00 0.00 4.35
78 79 1.321474 CCATCCATTTGATCCCCACG 58.679 55.000 0.00 0.00 0.00 4.94
79 80 2.459555 ACCATCCATTTGATCCCCAC 57.540 50.000 0.00 0.00 0.00 4.61
80 81 2.314247 TGAACCATCCATTTGATCCCCA 59.686 45.455 0.00 0.00 0.00 4.96
81 82 2.961062 CTGAACCATCCATTTGATCCCC 59.039 50.000 0.00 0.00 0.00 4.81
82 83 2.961062 CCTGAACCATCCATTTGATCCC 59.039 50.000 0.00 0.00 0.00 3.85
83 84 3.902218 TCCTGAACCATCCATTTGATCC 58.098 45.455 0.00 0.00 0.00 3.36
84 85 5.420104 ACTTTCCTGAACCATCCATTTGATC 59.580 40.000 0.00 0.00 0.00 2.92
85 86 5.336102 ACTTTCCTGAACCATCCATTTGAT 58.664 37.500 0.00 0.00 0.00 2.57
86 87 4.739793 ACTTTCCTGAACCATCCATTTGA 58.260 39.130 0.00 0.00 0.00 2.69
87 88 4.768968 AGACTTTCCTGAACCATCCATTTG 59.231 41.667 0.00 0.00 0.00 2.32
88 89 5.003096 AGACTTTCCTGAACCATCCATTT 57.997 39.130 0.00 0.00 0.00 2.32
89 90 4.664688 AGACTTTCCTGAACCATCCATT 57.335 40.909 0.00 0.00 0.00 3.16
90 91 4.785376 ACTAGACTTTCCTGAACCATCCAT 59.215 41.667 0.00 0.00 0.00 3.41
91 92 4.020218 CACTAGACTTTCCTGAACCATCCA 60.020 45.833 0.00 0.00 0.00 3.41
92 93 4.223032 TCACTAGACTTTCCTGAACCATCC 59.777 45.833 0.00 0.00 0.00 3.51
93 94 5.407407 TCACTAGACTTTCCTGAACCATC 57.593 43.478 0.00 0.00 0.00 3.51
94 95 5.799213 CTTCACTAGACTTTCCTGAACCAT 58.201 41.667 0.00 0.00 0.00 3.55
95 96 4.503296 GCTTCACTAGACTTTCCTGAACCA 60.503 45.833 0.00 0.00 0.00 3.67
96 97 3.997681 GCTTCACTAGACTTTCCTGAACC 59.002 47.826 0.00 0.00 0.00 3.62
97 98 3.675698 CGCTTCACTAGACTTTCCTGAAC 59.324 47.826 0.00 0.00 0.00 3.18
98 99 3.306088 CCGCTTCACTAGACTTTCCTGAA 60.306 47.826 0.00 0.00 0.00 3.02
99 100 2.231478 CCGCTTCACTAGACTTTCCTGA 59.769 50.000 0.00 0.00 0.00 3.86
100 101 2.611518 CCGCTTCACTAGACTTTCCTG 58.388 52.381 0.00 0.00 0.00 3.86
101 102 1.066787 GCCGCTTCACTAGACTTTCCT 60.067 52.381 0.00 0.00 0.00 3.36
102 103 1.337823 TGCCGCTTCACTAGACTTTCC 60.338 52.381 0.00 0.00 0.00 3.13
103 104 1.727335 GTGCCGCTTCACTAGACTTTC 59.273 52.381 0.00 0.00 34.29 2.62
104 105 1.797025 GTGCCGCTTCACTAGACTTT 58.203 50.000 0.00 0.00 34.29 2.66
105 106 0.388649 CGTGCCGCTTCACTAGACTT 60.389 55.000 0.00 0.00 34.92 3.01
106 107 1.213013 CGTGCCGCTTCACTAGACT 59.787 57.895 0.00 0.00 34.92 3.24
107 108 1.805945 CCGTGCCGCTTCACTAGAC 60.806 63.158 0.00 0.00 34.92 2.59
108 109 2.209064 GACCGTGCCGCTTCACTAGA 62.209 60.000 0.00 0.00 34.92 2.43
109 110 1.805945 GACCGTGCCGCTTCACTAG 60.806 63.158 0.00 0.00 34.92 2.57
110 111 2.260434 GACCGTGCCGCTTCACTA 59.740 61.111 0.00 0.00 34.92 2.74
111 112 3.616721 AGACCGTGCCGCTTCACT 61.617 61.111 0.00 0.00 34.92 3.41
112 113 3.414700 CAGACCGTGCCGCTTCAC 61.415 66.667 0.00 0.00 0.00 3.18
113 114 3.858868 GACAGACCGTGCCGCTTCA 62.859 63.158 0.00 0.00 0.00 3.02
114 115 3.112709 GACAGACCGTGCCGCTTC 61.113 66.667 0.00 0.00 0.00 3.86
118 119 3.834447 TTGTCGACAGACCGTGCCG 62.834 63.158 19.11 0.00 46.51 5.69
119 120 2.028484 TTGTCGACAGACCGTGCC 59.972 61.111 19.11 0.00 46.51 5.01
120 121 1.590525 TGTTGTCGACAGACCGTGC 60.591 57.895 19.11 5.19 46.51 5.34
121 122 4.722008 TGTTGTCGACAGACCGTG 57.278 55.556 19.11 0.00 46.51 4.94
128 129 1.069978 TGCTTCCATCTGTTGTCGACA 59.930 47.619 15.76 15.76 36.65 4.35
129 130 1.461127 GTGCTTCCATCTGTTGTCGAC 59.539 52.381 9.11 9.11 0.00 4.20
130 131 1.608025 GGTGCTTCCATCTGTTGTCGA 60.608 52.381 0.00 0.00 35.97 4.20
131 132 0.798776 GGTGCTTCCATCTGTTGTCG 59.201 55.000 0.00 0.00 35.97 4.35
132 133 0.798776 CGGTGCTTCCATCTGTTGTC 59.201 55.000 0.00 0.00 35.57 3.18
133 134 1.237285 GCGGTGCTTCCATCTGTTGT 61.237 55.000 0.00 0.00 35.57 3.32
134 135 1.503542 GCGGTGCTTCCATCTGTTG 59.496 57.895 0.00 0.00 35.57 3.33
135 136 2.034879 CGCGGTGCTTCCATCTGTT 61.035 57.895 0.00 0.00 35.57 3.16
136 137 2.434884 CGCGGTGCTTCCATCTGT 60.435 61.111 0.00 0.00 35.57 3.41
137 138 2.434884 ACGCGGTGCTTCCATCTG 60.435 61.111 12.47 0.00 35.57 2.90
138 139 2.125512 GACGCGGTGCTTCCATCT 60.126 61.111 12.47 0.00 35.57 2.90
139 140 3.554692 CGACGCGGTGCTTCCATC 61.555 66.667 12.47 0.00 35.57 3.51
150 151 0.457853 TTTGATCCTTCTCCGACGCG 60.458 55.000 3.53 3.53 0.00 6.01
151 152 1.661112 CTTTTGATCCTTCTCCGACGC 59.339 52.381 0.00 0.00 0.00 5.19
152 153 2.924290 GTCTTTTGATCCTTCTCCGACG 59.076 50.000 0.00 0.00 0.00 5.12
153 154 3.926616 TGTCTTTTGATCCTTCTCCGAC 58.073 45.455 0.00 0.00 0.00 4.79
154 155 4.617253 TTGTCTTTTGATCCTTCTCCGA 57.383 40.909 0.00 0.00 0.00 4.55
155 156 5.886960 AATTGTCTTTTGATCCTTCTCCG 57.113 39.130 0.00 0.00 0.00 4.63
156 157 9.794685 GAATAAATTGTCTTTTGATCCTTCTCC 57.205 33.333 0.00 0.00 0.00 3.71
162 163 9.468532 GGCTATGAATAAATTGTCTTTTGATCC 57.531 33.333 0.00 0.00 0.00 3.36
163 164 9.173939 CGGCTATGAATAAATTGTCTTTTGATC 57.826 33.333 0.00 0.00 0.00 2.92
164 165 7.649306 GCGGCTATGAATAAATTGTCTTTTGAT 59.351 33.333 0.00 0.00 0.00 2.57
165 166 6.972328 GCGGCTATGAATAAATTGTCTTTTGA 59.028 34.615 0.00 0.00 0.00 2.69
166 167 6.198966 GGCGGCTATGAATAAATTGTCTTTTG 59.801 38.462 0.00 0.00 0.00 2.44
167 168 6.273071 GGCGGCTATGAATAAATTGTCTTTT 58.727 36.000 0.00 0.00 0.00 2.27
168 169 5.505654 CGGCGGCTATGAATAAATTGTCTTT 60.506 40.000 7.61 0.00 0.00 2.52
169 170 4.024048 CGGCGGCTATGAATAAATTGTCTT 60.024 41.667 7.61 0.00 0.00 3.01
170 171 3.498397 CGGCGGCTATGAATAAATTGTCT 59.502 43.478 7.61 0.00 0.00 3.41
171 172 3.250040 ACGGCGGCTATGAATAAATTGTC 59.750 43.478 13.24 0.00 0.00 3.18
172 173 3.003275 CACGGCGGCTATGAATAAATTGT 59.997 43.478 13.24 0.00 0.00 2.71
173 174 3.249799 TCACGGCGGCTATGAATAAATTG 59.750 43.478 13.24 0.00 0.00 2.32
174 175 3.472652 TCACGGCGGCTATGAATAAATT 58.527 40.909 13.24 0.00 0.00 1.82
175 176 3.120321 TCACGGCGGCTATGAATAAAT 57.880 42.857 13.24 0.00 0.00 1.40
176 177 2.605837 TCACGGCGGCTATGAATAAA 57.394 45.000 13.24 0.00 0.00 1.40
177 178 2.206750 GTTCACGGCGGCTATGAATAA 58.793 47.619 22.48 4.39 34.98 1.40
178 179 1.860676 GTTCACGGCGGCTATGAATA 58.139 50.000 22.48 5.00 34.98 1.75
179 180 1.151777 CGTTCACGGCGGCTATGAAT 61.152 55.000 22.48 0.00 34.98 2.57
180 181 1.807981 CGTTCACGGCGGCTATGAA 60.808 57.895 17.85 17.85 35.37 2.57
181 182 2.202690 CGTTCACGGCGGCTATGA 60.203 61.111 13.24 8.11 35.37 2.15
182 183 3.925238 GCGTTCACGGCGGCTATG 61.925 66.667 13.24 5.52 40.23 2.23
214 215 2.676121 TGTTTCTGCCGGCCATGG 60.676 61.111 26.77 7.63 0.00 3.66
215 216 0.676466 TAGTGTTTCTGCCGGCCATG 60.676 55.000 26.77 14.54 0.00 3.66
216 217 0.037590 TTAGTGTTTCTGCCGGCCAT 59.962 50.000 26.77 6.86 0.00 4.40
217 218 0.605319 CTTAGTGTTTCTGCCGGCCA 60.605 55.000 26.77 11.66 0.00 5.36
218 219 1.923227 GCTTAGTGTTTCTGCCGGCC 61.923 60.000 26.77 8.57 0.00 6.13
219 220 1.234615 TGCTTAGTGTTTCTGCCGGC 61.235 55.000 22.73 22.73 0.00 6.13
220 221 1.069227 GTTGCTTAGTGTTTCTGCCGG 60.069 52.381 0.00 0.00 0.00 6.13
221 222 1.069227 GGTTGCTTAGTGTTTCTGCCG 60.069 52.381 0.00 0.00 0.00 5.69
222 223 2.230660 AGGTTGCTTAGTGTTTCTGCC 58.769 47.619 0.00 0.00 0.00 4.85
223 224 3.120165 GCTAGGTTGCTTAGTGTTTCTGC 60.120 47.826 0.00 0.00 0.00 4.26
224 225 3.437049 GGCTAGGTTGCTTAGTGTTTCTG 59.563 47.826 0.00 0.00 0.00 3.02
225 226 3.328050 AGGCTAGGTTGCTTAGTGTTTCT 59.672 43.478 0.00 0.00 0.00 2.52
226 227 3.676093 AGGCTAGGTTGCTTAGTGTTTC 58.324 45.455 0.00 0.00 0.00 2.78
227 228 3.790089 AGGCTAGGTTGCTTAGTGTTT 57.210 42.857 0.00 0.00 0.00 2.83
228 229 4.903045 TTAGGCTAGGTTGCTTAGTGTT 57.097 40.909 0.00 0.00 0.00 3.32
229 230 4.903045 TTTAGGCTAGGTTGCTTAGTGT 57.097 40.909 0.00 0.00 0.00 3.55
230 231 7.011482 CAGTAATTTAGGCTAGGTTGCTTAGTG 59.989 40.741 8.21 5.29 0.00 2.74
231 232 7.048512 CAGTAATTTAGGCTAGGTTGCTTAGT 58.951 38.462 8.21 0.00 0.00 2.24
232 233 6.017852 GCAGTAATTTAGGCTAGGTTGCTTAG 60.018 42.308 8.21 2.47 0.00 2.18
233 234 5.820947 GCAGTAATTTAGGCTAGGTTGCTTA 59.179 40.000 8.21 0.00 0.00 3.09
234 235 4.640647 GCAGTAATTTAGGCTAGGTTGCTT 59.359 41.667 8.21 0.00 0.00 3.91
235 236 4.080299 AGCAGTAATTTAGGCTAGGTTGCT 60.080 41.667 10.27 10.27 34.25 3.91
236 237 4.200092 AGCAGTAATTTAGGCTAGGTTGC 58.800 43.478 0.00 1.46 34.25 4.17
237 238 6.258068 GTGTAGCAGTAATTTAGGCTAGGTTG 59.742 42.308 9.03 0.00 39.33 3.77
238 239 6.070424 TGTGTAGCAGTAATTTAGGCTAGGTT 60.070 38.462 9.03 0.00 39.33 3.50
239 240 5.424252 TGTGTAGCAGTAATTTAGGCTAGGT 59.576 40.000 9.03 0.00 39.33 3.08
240 241 5.753921 GTGTGTAGCAGTAATTTAGGCTAGG 59.246 44.000 9.03 0.00 39.33 3.02
241 242 5.459107 CGTGTGTAGCAGTAATTTAGGCTAG 59.541 44.000 9.03 0.00 39.33 3.42
242 243 5.345702 CGTGTGTAGCAGTAATTTAGGCTA 58.654 41.667 0.00 0.00 37.79 3.93
243 244 4.181578 CGTGTGTAGCAGTAATTTAGGCT 58.818 43.478 0.00 0.00 40.26 4.58
244 245 3.242316 GCGTGTGTAGCAGTAATTTAGGC 60.242 47.826 0.00 0.00 34.19 3.93
245 246 3.308866 GGCGTGTGTAGCAGTAATTTAGG 59.691 47.826 0.00 0.00 36.08 2.69
246 247 3.000078 CGGCGTGTGTAGCAGTAATTTAG 60.000 47.826 0.00 0.00 36.08 1.85
247 248 2.924926 CGGCGTGTGTAGCAGTAATTTA 59.075 45.455 0.00 0.00 36.08 1.40
248 249 1.730064 CGGCGTGTGTAGCAGTAATTT 59.270 47.619 0.00 0.00 36.08 1.82
249 250 1.355971 CGGCGTGTGTAGCAGTAATT 58.644 50.000 0.00 0.00 36.08 1.40
250 251 1.082117 GCGGCGTGTGTAGCAGTAAT 61.082 55.000 9.37 0.00 36.08 1.89
251 252 1.735198 GCGGCGTGTGTAGCAGTAA 60.735 57.895 9.37 0.00 36.08 2.24
252 253 2.126228 GCGGCGTGTGTAGCAGTA 60.126 61.111 9.37 0.00 36.08 2.74
253 254 4.293648 TGCGGCGTGTGTAGCAGT 62.294 61.111 9.37 0.00 34.39 4.40
254 255 3.777925 GTGCGGCGTGTGTAGCAG 61.778 66.667 9.37 0.00 40.53 4.24
308 309 4.698625 AAGCCTCCCCGACGACCT 62.699 66.667 0.00 0.00 0.00 3.85
309 310 4.452733 CAAGCCTCCCCGACGACC 62.453 72.222 0.00 0.00 0.00 4.79
313 314 3.628646 ATGTGCAAGCCTCCCCGAC 62.629 63.158 0.00 0.00 0.00 4.79
314 315 3.329889 ATGTGCAAGCCTCCCCGA 61.330 61.111 0.00 0.00 0.00 5.14
315 316 3.136123 CATGTGCAAGCCTCCCCG 61.136 66.667 0.00 0.00 0.00 5.73
316 317 2.036256 ACATGTGCAAGCCTCCCC 59.964 61.111 0.00 0.00 0.00 4.81
317 318 0.682209 ATCACATGTGCAAGCCTCCC 60.682 55.000 21.38 0.00 0.00 4.30
318 319 0.737219 GATCACATGTGCAAGCCTCC 59.263 55.000 21.38 0.21 0.00 4.30
319 320 1.400846 CAGATCACATGTGCAAGCCTC 59.599 52.381 21.38 9.88 0.00 4.70
320 321 1.271762 ACAGATCACATGTGCAAGCCT 60.272 47.619 21.38 9.69 0.00 4.58
321 322 1.171308 ACAGATCACATGTGCAAGCC 58.829 50.000 21.38 7.65 0.00 4.35
322 323 2.592194 CAACAGATCACATGTGCAAGC 58.408 47.619 21.38 7.84 0.00 4.01
323 324 2.815503 TCCAACAGATCACATGTGCAAG 59.184 45.455 21.38 12.48 0.00 4.01
324 325 2.861274 TCCAACAGATCACATGTGCAA 58.139 42.857 21.38 5.24 0.00 4.08
325 326 2.565046 TCCAACAGATCACATGTGCA 57.435 45.000 21.38 10.44 0.00 4.57
326 327 3.076621 TCTTCCAACAGATCACATGTGC 58.923 45.455 21.38 8.16 0.00 4.57
327 328 5.694231 TTTCTTCCAACAGATCACATGTG 57.306 39.130 20.18 20.18 0.00 3.21
328 329 6.005823 TCATTTCTTCCAACAGATCACATGT 58.994 36.000 0.00 0.00 0.00 3.21
329 330 6.320171 GTCATTTCTTCCAACAGATCACATG 58.680 40.000 0.00 0.00 0.00 3.21
330 331 5.122869 CGTCATTTCTTCCAACAGATCACAT 59.877 40.000 0.00 0.00 0.00 3.21
331 332 4.452114 CGTCATTTCTTCCAACAGATCACA 59.548 41.667 0.00 0.00 0.00 3.58
332 333 4.142816 CCGTCATTTCTTCCAACAGATCAC 60.143 45.833 0.00 0.00 0.00 3.06
333 334 4.002982 CCGTCATTTCTTCCAACAGATCA 58.997 43.478 0.00 0.00 0.00 2.92
334 335 3.181506 GCCGTCATTTCTTCCAACAGATC 60.182 47.826 0.00 0.00 0.00 2.75
335 336 2.749621 GCCGTCATTTCTTCCAACAGAT 59.250 45.455 0.00 0.00 0.00 2.90
336 337 2.151202 GCCGTCATTTCTTCCAACAGA 58.849 47.619 0.00 0.00 0.00 3.41
337 338 2.154462 AGCCGTCATTTCTTCCAACAG 58.846 47.619 0.00 0.00 0.00 3.16
338 339 2.270352 AGCCGTCATTTCTTCCAACA 57.730 45.000 0.00 0.00 0.00 3.33
339 340 4.662145 CATTAGCCGTCATTTCTTCCAAC 58.338 43.478 0.00 0.00 0.00 3.77
340 341 3.128589 GCATTAGCCGTCATTTCTTCCAA 59.871 43.478 0.00 0.00 33.58 3.53
341 342 2.682856 GCATTAGCCGTCATTTCTTCCA 59.317 45.455 0.00 0.00 33.58 3.53
342 343 2.286418 CGCATTAGCCGTCATTTCTTCC 60.286 50.000 0.00 0.00 37.52 3.46
343 344 2.286418 CCGCATTAGCCGTCATTTCTTC 60.286 50.000 0.00 0.00 37.52 2.87
344 345 1.670811 CCGCATTAGCCGTCATTTCTT 59.329 47.619 0.00 0.00 37.52 2.52
345 346 1.299541 CCGCATTAGCCGTCATTTCT 58.700 50.000 0.00 0.00 37.52 2.52
346 347 1.003866 GACCGCATTAGCCGTCATTTC 60.004 52.381 4.51 0.00 44.81 2.17
347 348 1.014352 GACCGCATTAGCCGTCATTT 58.986 50.000 4.51 0.00 44.81 2.32
348 349 0.178068 AGACCGCATTAGCCGTCATT 59.822 50.000 10.57 0.00 46.87 2.57
349 350 0.249489 GAGACCGCATTAGCCGTCAT 60.249 55.000 10.57 0.00 46.87 3.06
350 351 1.141019 GAGACCGCATTAGCCGTCA 59.859 57.895 10.57 0.00 46.87 4.35
351 352 1.944676 CGAGACCGCATTAGCCGTC 60.945 63.158 0.00 0.00 45.48 4.79
352 353 1.378882 TACGAGACCGCATTAGCCGT 61.379 55.000 0.00 0.00 39.95 5.68
353 354 0.248743 TTACGAGACCGCATTAGCCG 60.249 55.000 0.00 0.00 39.95 5.52
354 355 1.206523 GTTACGAGACCGCATTAGCC 58.793 55.000 0.00 0.00 39.95 3.93
355 356 1.202382 AGGTTACGAGACCGCATTAGC 60.202 52.381 0.00 0.00 44.62 3.09
356 357 2.865343 AGGTTACGAGACCGCATTAG 57.135 50.000 0.00 0.00 44.62 1.73
357 358 2.492881 TGAAGGTTACGAGACCGCATTA 59.507 45.455 0.00 0.00 44.62 1.90
358 359 1.274167 TGAAGGTTACGAGACCGCATT 59.726 47.619 0.00 0.00 44.62 3.56
359 360 0.892755 TGAAGGTTACGAGACCGCAT 59.107 50.000 0.00 0.00 44.62 4.73
360 361 0.038892 GTGAAGGTTACGAGACCGCA 60.039 55.000 0.00 0.00 44.62 5.69
361 362 0.243095 AGTGAAGGTTACGAGACCGC 59.757 55.000 0.00 0.00 44.62 5.68
362 363 1.811359 AGAGTGAAGGTTACGAGACCG 59.189 52.381 0.00 0.00 44.62 4.79
403 404 0.941542 TTTTTGACGGGAAGAGCGTG 59.058 50.000 0.00 0.00 0.00 5.34
414 415 9.856803 TTCTTGTTTTTCTTTTTCTTTTTGACG 57.143 25.926 0.00 0.00 0.00 4.35
417 418 9.101971 CCGTTCTTGTTTTTCTTTTTCTTTTTG 57.898 29.630 0.00 0.00 0.00 2.44
423 424 6.034577 CCTCACCGTTCTTGTTTTTCTTTTTC 59.965 38.462 0.00 0.00 0.00 2.29
426 427 4.703093 TCCTCACCGTTCTTGTTTTTCTTT 59.297 37.500 0.00 0.00 0.00 2.52
427 428 4.095932 GTCCTCACCGTTCTTGTTTTTCTT 59.904 41.667 0.00 0.00 0.00 2.52
428 429 3.626217 GTCCTCACCGTTCTTGTTTTTCT 59.374 43.478 0.00 0.00 0.00 2.52
429 430 3.545426 CGTCCTCACCGTTCTTGTTTTTC 60.545 47.826 0.00 0.00 0.00 2.29
430 431 2.353579 CGTCCTCACCGTTCTTGTTTTT 59.646 45.455 0.00 0.00 0.00 1.94
431 432 1.937899 CGTCCTCACCGTTCTTGTTTT 59.062 47.619 0.00 0.00 0.00 2.43
432 433 1.578583 CGTCCTCACCGTTCTTGTTT 58.421 50.000 0.00 0.00 0.00 2.83
433 434 0.878961 GCGTCCTCACCGTTCTTGTT 60.879 55.000 0.00 0.00 0.00 2.83
434 435 1.300697 GCGTCCTCACCGTTCTTGT 60.301 57.895 0.00 0.00 0.00 3.16
435 436 2.027625 GGCGTCCTCACCGTTCTTG 61.028 63.158 0.00 0.00 0.00 3.02
437 438 3.692406 GGGCGTCCTCACCGTTCT 61.692 66.667 0.00 0.00 0.00 3.01
766 774 2.048444 AGCCACCACATCATCATGTC 57.952 50.000 0.00 0.00 41.69 3.06
776 784 0.179020 CTTCACTCCAAGCCACCACA 60.179 55.000 0.00 0.00 0.00 4.17
800 808 3.034635 ACCTTCATCTCCGAGCTACATT 58.965 45.455 0.00 0.00 0.00 2.71
804 812 2.025155 GTCACCTTCATCTCCGAGCTA 58.975 52.381 0.00 0.00 0.00 3.32
828 836 8.869897 CGAGCAACAAGTAAGAGAATGTTAATA 58.130 33.333 0.00 0.00 34.45 0.98
941 952 3.571590 AGGGTCAGAAGGCTACTATCTG 58.428 50.000 7.47 7.47 41.49 2.90
1014 1168 3.494573 CCACATCCAGGATCATGTCTCTG 60.495 52.174 6.62 1.03 30.48 3.35
1108 1262 1.137086 TCAGCGGTAGGAAGAATCAGC 59.863 52.381 0.00 0.00 0.00 4.26
1199 1354 2.879462 GCGCACTTACCGACCTCG 60.879 66.667 0.30 0.00 39.44 4.63
1221 1376 6.035866 CACATGATGCTAGAAGAAGACAAGAC 59.964 42.308 0.00 0.00 0.00 3.01
1247 1402 4.093291 AGCTTGCCCTCCTCGCTG 62.093 66.667 0.00 0.00 0.00 5.18
1288 1443 5.463061 CGAATGAAACAAGAGGTGCAATTTT 59.537 36.000 0.00 0.00 0.00 1.82
1316 1471 5.701224 ACAACAGAACATAGGAAGGGAAAA 58.299 37.500 0.00 0.00 0.00 2.29
1317 1472 5.319043 ACAACAGAACATAGGAAGGGAAA 57.681 39.130 0.00 0.00 0.00 3.13
1320 1475 5.414765 GGTTTACAACAGAACATAGGAAGGG 59.585 44.000 0.00 0.00 0.00 3.95
1332 1494 7.581213 ACTGAATGATTTGGTTTACAACAGA 57.419 32.000 0.00 0.00 39.19 3.41
1454 1618 6.872547 AGAAACGGAACTACCTTTAGATCAAC 59.127 38.462 0.00 0.00 36.31 3.18
1585 3237 2.939103 ACATAGAAGAAGATGCGGTTGC 59.061 45.455 0.00 0.00 43.20 4.17
1624 3276 0.733729 GCGACTTAGAGAGGAGCGAA 59.266 55.000 0.00 0.00 0.00 4.70
1674 3326 2.224079 ACAACGCATGTGATTCACTGAC 59.776 45.455 14.43 6.02 41.93 3.51
1916 3568 8.204160 TCACTAATCCAATGTGAACTAGTATGG 58.796 37.037 0.00 0.00 37.71 2.74
1919 3571 8.362464 AGTCACTAATCCAATGTGAACTAGTA 57.638 34.615 0.00 0.00 41.52 1.82
1920 3572 7.246171 AGTCACTAATCCAATGTGAACTAGT 57.754 36.000 0.00 0.00 41.52 2.57
1921 3573 9.254133 CATAGTCACTAATCCAATGTGAACTAG 57.746 37.037 0.00 0.00 41.52 2.57
2181 3834 8.948631 ACTTAAACATATATATCTGGATGCCG 57.051 34.615 3.44 0.00 0.00 5.69
2464 4281 9.148104 GATGTTTCCGATATTAGTATTGTACCC 57.852 37.037 0.00 0.00 0.00 3.69
2553 4370 9.364989 GCATGAGTAAATATTGTGGCTTAAAAA 57.635 29.630 0.00 0.00 0.00 1.94
3116 4934 9.372369 ACTGATACCTAAAAGAAGAAATTCTCG 57.628 33.333 0.00 0.00 0.00 4.04
3453 7474 6.300354 AGAACAAGGTTAAACATGAGTTCG 57.700 37.500 2.13 0.00 36.84 3.95
3546 7567 2.618816 GGCTGATTGTGGGAGATGTGAA 60.619 50.000 0.00 0.00 0.00 3.18
3587 7608 3.256383 CCACATCTGGATGCACTTTTTCA 59.744 43.478 10.13 0.00 42.39 2.69
3931 7952 1.406614 GGATCCCAGTCTTGCACAGAG 60.407 57.143 0.00 0.00 29.34 3.35
4003 8024 7.188157 TCAATTTTTGCTCAATTTTGAAGTGC 58.812 30.769 0.00 0.00 36.64 4.40
4035 8056 3.319122 CAGGCAAAGGCTCTAAACTGTTT 59.681 43.478 10.98 10.98 40.87 2.83
4058 8079 5.144100 ACCACCAGTTTGATCAATTAACCA 58.856 37.500 9.40 0.00 0.00 3.67
4106 8127 7.559590 AGCAAATAATTGTAGATCCAGACAC 57.440 36.000 0.00 0.00 38.85 3.67
4279 8302 1.003118 TGTGTGTGCTTGAGGATACCC 59.997 52.381 0.00 0.00 37.17 3.69
4636 8659 9.541884 TGCTAATATACCTTGACATCTATGGTA 57.458 33.333 0.00 0.00 37.62 3.25
4731 8754 5.002934 CGAATATCATGAACTCGTATCTGCG 59.997 44.000 0.00 0.00 0.00 5.18
4799 8822 4.271696 AGTATGAGCACACTACAGCAAA 57.728 40.909 0.00 0.00 0.00 3.68
4800 8823 3.961480 AGTATGAGCACACTACAGCAA 57.039 42.857 0.00 0.00 0.00 3.91
4811 8834 6.015095 CACCTACCTGATGAATAGTATGAGCA 60.015 42.308 0.00 0.00 0.00 4.26
4910 8934 4.024556 CAGCAATAGCAAAACCGGATAGAG 60.025 45.833 9.46 0.00 45.49 2.43
4941 8996 7.220300 AGCGACTACATAAACAGAGTAAATTCG 59.780 37.037 0.00 0.00 0.00 3.34
5128 9183 5.815740 ACACCGACCTAAGCTAATATTTGTG 59.184 40.000 0.00 0.00 0.00 3.33
5134 9189 5.142639 ACCATACACCGACCTAAGCTAATA 58.857 41.667 0.00 0.00 0.00 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.