Multiple sequence alignment - TraesCS1D01G185800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G185800 chr1D 100.000 2366 0 0 1 2366 256786910 256784545 0.000000e+00 4370.0
1 TraesCS1D01G185800 chr1D 85.261 631 80 6 52 670 81167716 81168345 2.560000e-179 638.0
2 TraesCS1D01G185800 chr1D 96.610 59 1 1 1 58 21580822 21580880 1.940000e-16 97.1
3 TraesCS1D01G185800 chr1B 94.967 1689 66 9 684 2365 356449497 356451173 0.000000e+00 2630.0
4 TraesCS1D01G185800 chr1B 93.103 638 39 4 52 684 356448904 356449541 0.000000e+00 929.0
5 TraesCS1D01G185800 chr1A 96.986 763 10 7 1616 2366 330088591 330087830 0.000000e+00 1269.0
6 TraesCS1D01G185800 chr1A 92.920 678 44 2 684 1358 330147069 330146393 0.000000e+00 983.0
7 TraesCS1D01G185800 chr1A 92.138 636 46 4 52 684 330147659 330147025 0.000000e+00 894.0
8 TraesCS1D01G185800 chr1A 88.057 628 72 3 58 682 63809450 63810077 0.000000e+00 741.0
9 TraesCS1D01G185800 chr1A 85.940 697 91 5 684 1379 63810035 63810725 0.000000e+00 737.0
10 TraesCS1D01G185800 chr1A 91.566 249 14 4 1357 1605 330135710 330135469 1.050000e-88 337.0
11 TraesCS1D01G185800 chr4A 88.235 646 70 3 684 1326 91594479 91593837 0.000000e+00 767.0
12 TraesCS1D01G185800 chr4A 83.636 715 104 11 685 1394 466106658 466105952 0.000000e+00 660.0
13 TraesCS1D01G185800 chr4A 80.031 641 118 10 52 687 150815270 150814635 1.280000e-127 466.0
14 TraesCS1D01G185800 chr4A 98.214 56 1 0 1 56 421948104 421948159 5.380000e-17 99.0
15 TraesCS1D01G185800 chr7D 86.414 633 81 5 52 680 373581840 373581209 0.000000e+00 688.0
16 TraesCS1D01G185800 chr7D 84.483 696 100 6 685 1377 497983004 497983694 0.000000e+00 680.0
17 TraesCS1D01G185800 chr7A 84.225 710 102 8 685 1390 11264531 11265234 0.000000e+00 682.0
18 TraesCS1D01G185800 chr7A 85.647 641 84 6 50 686 419560872 419560236 0.000000e+00 667.0
19 TraesCS1D01G185800 chr7A 80.811 641 115 8 52 687 429059582 429058945 1.630000e-136 496.0
20 TraesCS1D01G185800 chr2D 84.000 700 103 7 695 1390 383550375 383551069 0.000000e+00 664.0
21 TraesCS1D01G185800 chr2D 100.000 56 0 0 1 56 115927065 115927120 1.160000e-18 104.0
22 TraesCS1D01G185800 chr2D 100.000 54 0 0 1 54 11379688 11379635 1.500000e-17 100.0
23 TraesCS1D01G185800 chr2D 96.552 58 1 1 1 58 486691816 486691760 6.960000e-16 95.3
24 TraesCS1D01G185800 chr2D 91.176 68 4 2 1 68 475967058 475966993 9.010000e-15 91.6
25 TraesCS1D01G185800 chr3D 83.685 711 105 9 685 1390 22681775 22681071 0.000000e+00 660.0
26 TraesCS1D01G185800 chr4D 81.337 643 108 11 52 687 294934583 294933946 1.620000e-141 512.0
27 TraesCS1D01G185800 chr4D 82.294 497 80 7 1876 2366 491345726 491346220 7.820000e-115 424.0
28 TraesCS1D01G185800 chr4D 100.000 53 0 0 1 53 487773547 487773495 5.380000e-17 99.0
29 TraesCS1D01G185800 chr4B 81.162 568 88 14 1816 2366 673474691 673474126 2.790000e-119 438.0
30 TraesCS1D01G185800 chr5A 82.546 487 77 7 1876 2356 707532579 707533063 2.810000e-114 422.0
31 TraesCS1D01G185800 chr5D 100.000 53 0 0 1 53 224015522 224015574 5.380000e-17 99.0
32 TraesCS1D01G185800 chr5D 100.000 53 0 0 1 53 448998744 448998796 5.380000e-17 99.0
33 TraesCS1D01G185800 chr2B 88.636 44 4 1 1788 1830 537427120 537427163 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G185800 chr1D 256784545 256786910 2365 True 4370.0 4370 100.0000 1 2366 1 chr1D.!!$R1 2365
1 TraesCS1D01G185800 chr1D 81167716 81168345 629 False 638.0 638 85.2610 52 670 1 chr1D.!!$F2 618
2 TraesCS1D01G185800 chr1B 356448904 356451173 2269 False 1779.5 2630 94.0350 52 2365 2 chr1B.!!$F1 2313
3 TraesCS1D01G185800 chr1A 330087830 330088591 761 True 1269.0 1269 96.9860 1616 2366 1 chr1A.!!$R1 750
4 TraesCS1D01G185800 chr1A 330146393 330147659 1266 True 938.5 983 92.5290 52 1358 2 chr1A.!!$R3 1306
5 TraesCS1D01G185800 chr1A 63809450 63810725 1275 False 739.0 741 86.9985 58 1379 2 chr1A.!!$F1 1321
6 TraesCS1D01G185800 chr4A 91593837 91594479 642 True 767.0 767 88.2350 684 1326 1 chr4A.!!$R1 642
7 TraesCS1D01G185800 chr4A 466105952 466106658 706 True 660.0 660 83.6360 685 1394 1 chr4A.!!$R3 709
8 TraesCS1D01G185800 chr4A 150814635 150815270 635 True 466.0 466 80.0310 52 687 1 chr4A.!!$R2 635
9 TraesCS1D01G185800 chr7D 373581209 373581840 631 True 688.0 688 86.4140 52 680 1 chr7D.!!$R1 628
10 TraesCS1D01G185800 chr7D 497983004 497983694 690 False 680.0 680 84.4830 685 1377 1 chr7D.!!$F1 692
11 TraesCS1D01G185800 chr7A 11264531 11265234 703 False 682.0 682 84.2250 685 1390 1 chr7A.!!$F1 705
12 TraesCS1D01G185800 chr7A 419560236 419560872 636 True 667.0 667 85.6470 50 686 1 chr7A.!!$R1 636
13 TraesCS1D01G185800 chr7A 429058945 429059582 637 True 496.0 496 80.8110 52 687 1 chr7A.!!$R2 635
14 TraesCS1D01G185800 chr2D 383550375 383551069 694 False 664.0 664 84.0000 695 1390 1 chr2D.!!$F2 695
15 TraesCS1D01G185800 chr3D 22681071 22681775 704 True 660.0 660 83.6850 685 1390 1 chr3D.!!$R1 705
16 TraesCS1D01G185800 chr4D 294933946 294934583 637 True 512.0 512 81.3370 52 687 1 chr4D.!!$R1 635
17 TraesCS1D01G185800 chr4B 673474126 673474691 565 True 438.0 438 81.1620 1816 2366 1 chr4B.!!$R1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
596 613 0.032515 TCGATGGGTAGGAGAGGCAA 60.033 55.0 0.0 0.0 0.0 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1729 1772 0.382515 AGTTTTGCCGCTTTACGCAA 59.617 45.0 0.0 0.0 41.76 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.378610 GCAGACGGCAAAGAATAGGC 59.621 55.000 0.00 0.00 43.97 3.93
22 23 1.737838 CAGACGGCAAAGAATAGGCA 58.262 50.000 0.00 0.00 0.00 4.75
23 24 1.667724 CAGACGGCAAAGAATAGGCAG 59.332 52.381 0.00 0.00 0.00 4.85
24 25 1.555075 AGACGGCAAAGAATAGGCAGA 59.445 47.619 0.00 0.00 0.00 4.26
25 26 1.666189 GACGGCAAAGAATAGGCAGAC 59.334 52.381 0.00 0.00 0.00 3.51
26 27 0.652592 CGGCAAAGAATAGGCAGACG 59.347 55.000 0.00 0.00 0.00 4.18
27 28 1.017387 GGCAAAGAATAGGCAGACGG 58.983 55.000 0.00 0.00 0.00 4.79
28 29 0.378610 GCAAAGAATAGGCAGACGGC 59.621 55.000 0.00 0.00 43.74 5.68
39 40 2.346099 GCAGACGGCAAATAAGCAAA 57.654 45.000 0.00 0.00 43.97 3.68
40 41 2.879826 GCAGACGGCAAATAAGCAAAT 58.120 42.857 0.00 0.00 43.97 2.32
41 42 3.253230 GCAGACGGCAAATAAGCAAATT 58.747 40.909 0.00 0.00 43.97 1.82
42 43 3.304293 GCAGACGGCAAATAAGCAAATTC 59.696 43.478 0.00 0.00 43.97 2.17
43 44 3.859386 CAGACGGCAAATAAGCAAATTCC 59.141 43.478 0.00 0.00 35.83 3.01
44 45 3.509575 AGACGGCAAATAAGCAAATTCCA 59.490 39.130 0.00 0.00 35.83 3.53
45 46 3.848726 ACGGCAAATAAGCAAATTCCAG 58.151 40.909 0.00 0.00 35.83 3.86
46 47 3.258123 ACGGCAAATAAGCAAATTCCAGT 59.742 39.130 0.00 0.00 35.83 4.00
47 48 4.461081 ACGGCAAATAAGCAAATTCCAGTA 59.539 37.500 0.00 0.00 35.83 2.74
48 49 5.036737 CGGCAAATAAGCAAATTCCAGTAG 58.963 41.667 0.00 0.00 35.83 2.57
60 61 6.659824 CAAATTCCAGTAGTGTTACCCCTAT 58.340 40.000 0.00 0.00 0.00 2.57
118 119 3.133183 TCGATCCGGTCACCAATTTATGA 59.867 43.478 0.00 0.00 0.00 2.15
185 188 2.123854 TGCTCGCGATCCCCTACT 60.124 61.111 10.36 0.00 0.00 2.57
252 257 0.666274 ATGCTTCGCAGTTCGTTCGA 60.666 50.000 0.00 0.00 43.65 3.71
293 300 7.234371 TGGAACAAATCACATGGGAGAAAATTA 59.766 33.333 2.98 0.00 31.92 1.40
312 319 4.926140 TTACAACACACAAATGGCATGA 57.074 36.364 0.00 0.00 0.00 3.07
477 493 0.734889 CTGCCCATCATGTTCGAACC 59.265 55.000 24.78 7.80 0.00 3.62
584 600 5.505173 AAAAAGCTTGTGATATCGATGGG 57.495 39.130 8.54 0.00 0.00 4.00
596 613 0.032515 TCGATGGGTAGGAGAGGCAA 60.033 55.000 0.00 0.00 0.00 4.52
644 661 6.350864 GCCAGATCATGAGCTACATATAGTGT 60.351 42.308 14.17 0.00 44.95 3.55
659 676 6.094881 ACATATAGTGTGCACCCAAAATGTAC 59.905 38.462 15.69 1.92 40.28 2.90
672 689 5.391523 CCCAAAATGTACGTGAATTGATCGT 60.392 40.000 0.00 0.00 40.78 3.73
682 699 4.550831 CGTGAATTGATCGTCATTACAGCC 60.551 45.833 0.00 0.00 0.00 4.85
683 700 4.572389 GTGAATTGATCGTCATTACAGCCT 59.428 41.667 0.00 0.00 0.00 4.58
688 705 3.699538 TGATCGTCATTACAGCCTAGTGT 59.300 43.478 0.00 0.00 34.21 3.55
744 765 1.774856 GCCTGGTACTTATGGTGGGAT 59.225 52.381 0.00 0.00 0.00 3.85
806 827 2.843730 ACCAAATTTTTATGGGAGCCCC 59.156 45.455 2.49 3.42 45.71 5.80
942 965 3.982475 TCAAGATATGCTTAGAGGCACG 58.018 45.455 0.00 0.00 45.36 5.34
1033 1056 7.094805 GGTGTGAAGATGTATTAACAGCAGAAA 60.095 37.037 2.96 0.00 44.60 2.52
1106 1129 5.757886 CAATCATGTTGTTGTTAACTCCGT 58.242 37.500 7.22 0.00 0.00 4.69
1216 1239 5.459110 TTGCGATTTTCCGTGTATTAGAC 57.541 39.130 0.00 0.00 0.00 2.59
1248 1271 9.520204 CATTGTAATAGGGAAGCAAATAAAGTG 57.480 33.333 0.00 0.00 0.00 3.16
1258 1281 5.927281 AGCAAATAAAGTGGCTGATGAAT 57.073 34.783 0.00 0.00 34.83 2.57
1420 1444 1.002868 GTGCTGCATCTGGTCACCT 60.003 57.895 5.27 0.00 0.00 4.00
1429 1453 1.967319 TCTGGTCACCTTCAAAGCAC 58.033 50.000 0.00 0.00 0.00 4.40
1437 1461 1.680735 ACCTTCAAAGCACGCATGAAA 59.319 42.857 0.00 0.00 33.08 2.69
1440 1464 1.752753 TCAAAGCACGCATGAAAACG 58.247 45.000 0.00 0.00 0.00 3.60
1472 1496 6.467677 ACTAGCACAAAACTGATAGTGATGT 58.532 36.000 0.00 0.00 40.92 3.06
1611 1640 8.971073 CACAGTCCTTATTCATAAATTTCCCTT 58.029 33.333 0.00 0.00 0.00 3.95
1612 1641 9.547279 ACAGTCCTTATTCATAAATTTCCCTTT 57.453 29.630 0.00 0.00 0.00 3.11
1614 1643 9.768215 AGTCCTTATTCATAAATTTCCCTTTCA 57.232 29.630 0.00 0.00 0.00 2.69
1674 1709 1.481056 CCCAAGGGACCGAGTGTTCT 61.481 60.000 0.00 0.00 37.50 3.01
1729 1772 2.282391 TCGCTGCAAATGGTGGCT 60.282 55.556 0.00 0.00 0.00 4.75
2026 2081 2.203788 TGGGGCGAGAACCTCACT 60.204 61.111 0.00 0.00 34.34 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.667724 CCTATTCTTTGCCGTCTGCTG 59.332 52.381 0.00 0.00 42.00 4.41
1 2 2.014068 GCCTATTCTTTGCCGTCTGCT 61.014 52.381 0.00 0.00 42.00 4.24
2 3 0.378610 GCCTATTCTTTGCCGTCTGC 59.621 55.000 0.00 0.00 41.77 4.26
3 4 1.667724 CTGCCTATTCTTTGCCGTCTG 59.332 52.381 0.00 0.00 0.00 3.51
4 5 1.555075 TCTGCCTATTCTTTGCCGTCT 59.445 47.619 0.00 0.00 0.00 4.18
5 6 1.666189 GTCTGCCTATTCTTTGCCGTC 59.334 52.381 0.00 0.00 0.00 4.79
6 7 1.739067 GTCTGCCTATTCTTTGCCGT 58.261 50.000 0.00 0.00 0.00 5.68
7 8 0.652592 CGTCTGCCTATTCTTTGCCG 59.347 55.000 0.00 0.00 0.00 5.69
8 9 1.017387 CCGTCTGCCTATTCTTTGCC 58.983 55.000 0.00 0.00 0.00 4.52
9 10 0.378610 GCCGTCTGCCTATTCTTTGC 59.621 55.000 0.00 0.00 0.00 3.68
10 11 1.737838 TGCCGTCTGCCTATTCTTTG 58.262 50.000 0.00 0.00 40.16 2.77
11 12 2.489938 TTGCCGTCTGCCTATTCTTT 57.510 45.000 0.00 0.00 40.16 2.52
12 13 2.489938 TTTGCCGTCTGCCTATTCTT 57.510 45.000 0.00 0.00 40.16 2.52
13 14 2.717639 ATTTGCCGTCTGCCTATTCT 57.282 45.000 0.00 0.00 40.16 2.40
14 15 3.304057 GCTTATTTGCCGTCTGCCTATTC 60.304 47.826 0.00 0.00 40.16 1.75
15 16 2.618709 GCTTATTTGCCGTCTGCCTATT 59.381 45.455 0.00 0.00 40.16 1.73
16 17 2.222027 GCTTATTTGCCGTCTGCCTAT 58.778 47.619 0.00 0.00 40.16 2.57
17 18 1.065782 TGCTTATTTGCCGTCTGCCTA 60.066 47.619 0.00 0.00 40.16 3.93
18 19 0.322456 TGCTTATTTGCCGTCTGCCT 60.322 50.000 0.00 0.00 40.16 4.75
19 20 0.525761 TTGCTTATTTGCCGTCTGCC 59.474 50.000 0.00 0.00 40.16 4.85
20 21 2.346099 TTTGCTTATTTGCCGTCTGC 57.654 45.000 0.00 0.00 41.77 4.26
21 22 3.859386 GGAATTTGCTTATTTGCCGTCTG 59.141 43.478 0.00 0.00 0.00 3.51
22 23 3.509575 TGGAATTTGCTTATTTGCCGTCT 59.490 39.130 0.00 0.00 0.00 4.18
23 24 3.843999 TGGAATTTGCTTATTTGCCGTC 58.156 40.909 0.00 0.00 0.00 4.79
24 25 3.258123 ACTGGAATTTGCTTATTTGCCGT 59.742 39.130 0.00 0.00 0.00 5.68
25 26 3.848726 ACTGGAATTTGCTTATTTGCCG 58.151 40.909 0.00 0.00 0.00 5.69
26 27 5.807011 CACTACTGGAATTTGCTTATTTGCC 59.193 40.000 0.00 0.00 0.00 4.52
27 28 6.389906 ACACTACTGGAATTTGCTTATTTGC 58.610 36.000 0.00 0.00 0.00 3.68
28 29 9.341899 GTAACACTACTGGAATTTGCTTATTTG 57.658 33.333 0.00 0.00 0.00 2.32
29 30 8.520351 GGTAACACTACTGGAATTTGCTTATTT 58.480 33.333 0.00 0.00 0.00 1.40
30 31 7.122204 GGGTAACACTACTGGAATTTGCTTATT 59.878 37.037 0.00 0.00 39.74 1.40
31 32 6.602009 GGGTAACACTACTGGAATTTGCTTAT 59.398 38.462 0.00 0.00 39.74 1.73
32 33 5.941647 GGGTAACACTACTGGAATTTGCTTA 59.058 40.000 0.00 0.00 39.74 3.09
33 34 4.765339 GGGTAACACTACTGGAATTTGCTT 59.235 41.667 0.00 0.00 39.74 3.91
34 35 4.332828 GGGTAACACTACTGGAATTTGCT 58.667 43.478 0.00 0.00 39.74 3.91
35 36 3.442625 GGGGTAACACTACTGGAATTTGC 59.557 47.826 0.00 0.00 36.63 3.68
60 61 4.986054 TTTGTTAGAAGGTGCCCTCTTA 57.014 40.909 0.00 0.00 30.89 2.10
118 119 9.646427 GACATTTGTCTTACTAAGTCTTCATCT 57.354 33.333 3.45 0.00 41.65 2.90
185 188 6.934048 TGAAATCCGACATGTTATGCATAA 57.066 33.333 15.21 15.21 35.74 1.90
240 245 4.640805 TGAAATAAGTCGAACGAACTGC 57.359 40.909 0.00 0.00 0.00 4.40
252 257 8.869109 TGATTTGTTCCATTCCTTGAAATAAGT 58.131 29.630 0.00 0.00 0.00 2.24
277 283 5.920273 GTGTGTTGTAATTTTCTCCCATGTG 59.080 40.000 0.00 0.00 0.00 3.21
293 300 2.694628 ACTCATGCCATTTGTGTGTTGT 59.305 40.909 0.00 0.00 0.00 3.32
477 493 2.811431 TGTGTTTTGTATCTTCCAGCCG 59.189 45.455 0.00 0.00 0.00 5.52
582 598 1.141858 CAAGGATTGCCTCTCCTACCC 59.858 57.143 0.00 0.00 46.28 3.69
596 613 6.118852 GCATAAGAAGAAGGAACTCAAGGAT 58.881 40.000 0.00 0.00 38.49 3.24
644 661 1.968704 TCACGTACATTTTGGGTGCA 58.031 45.000 0.00 0.00 0.00 4.57
659 676 4.508971 GCTGTAATGACGATCAATTCACG 58.491 43.478 0.00 0.00 0.00 4.35
672 689 2.354704 GGTGCACACTAGGCTGTAATGA 60.355 50.000 20.43 0.00 0.00 2.57
682 699 3.120338 CGTACATTTTGGGTGCACACTAG 60.120 47.826 21.89 7.88 0.00 2.57
683 700 2.809119 CGTACATTTTGGGTGCACACTA 59.191 45.455 21.89 10.50 0.00 2.74
688 705 1.968704 TCACGTACATTTTGGGTGCA 58.031 45.000 0.00 0.00 0.00 4.57
744 765 5.255687 TCTTGGTGGACTAATGTACGTCTA 58.744 41.667 0.00 0.00 0.00 2.59
942 965 2.736347 TCTCTAAGTACTGCCCCAGTC 58.264 52.381 0.00 0.00 41.21 3.51
1033 1056 0.249955 CCAAATCGCAGGGCCAAAAT 59.750 50.000 6.18 0.00 0.00 1.82
1216 1239 6.757897 TGCTTCCCTATTACAATGTTCAAG 57.242 37.500 0.00 0.00 0.00 3.02
1248 1271 2.305009 AGCCTAGCAAATTCATCAGCC 58.695 47.619 0.00 0.00 0.00 4.85
1280 1303 3.437213 TCGAACCAATCCCTAGTCTCAA 58.563 45.455 0.00 0.00 0.00 3.02
1391 1415 3.183574 CAGATGCAGCACACAATTGTTTG 59.816 43.478 18.38 18.38 38.86 2.93
1420 1444 2.115595 CGTTTTCATGCGTGCTTTGAA 58.884 42.857 0.00 6.68 0.00 2.69
1429 1453 1.778591 GTGTTTGGACGTTTTCATGCG 59.221 47.619 0.00 0.00 0.00 4.73
1437 1461 2.319136 TGTGCTAGTGTTTGGACGTT 57.681 45.000 0.00 0.00 0.00 3.99
1440 1464 4.095782 TCAGTTTTGTGCTAGTGTTTGGAC 59.904 41.667 0.00 0.00 0.00 4.02
1566 1590 5.091261 TGTGTTTGGTACCTGCAATTTTT 57.909 34.783 14.36 0.00 0.00 1.94
1570 1599 2.884639 GACTGTGTTTGGTACCTGCAAT 59.115 45.455 14.36 0.00 0.00 3.56
1576 1605 5.310451 TGAATAAGGACTGTGTTTGGTACC 58.690 41.667 4.43 4.43 0.00 3.34
1674 1709 2.825075 TAGGCGGTGCGTGGACTCTA 62.825 60.000 0.00 0.00 0.00 2.43
1729 1772 0.382515 AGTTTTGCCGCTTTACGCAA 59.617 45.000 0.00 0.00 41.76 4.85
2026 2081 0.971959 ACCCGATGCCCGTGTAGTAA 60.972 55.000 0.00 0.00 36.31 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.