Multiple sequence alignment - TraesCS1D01G185700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G185700 chr1D 100.000 2585 0 0 1 2585 256786081 256783497 0.000000e+00 4774.0
1 TraesCS1D01G185700 chr1D 96.139 259 8 2 1793 2050 256784037 256783780 3.080000e-114 422.0
2 TraesCS1D01G185700 chr1D 96.139 259 8 2 2045 2302 256784289 256784032 3.080000e-114 422.0
3 TraesCS1D01G185700 chr1B 95.578 2058 69 12 1 2050 356449643 356451686 0.000000e+00 3277.0
4 TraesCS1D01G185700 chr1B 92.063 567 16 9 2045 2585 356451429 356451992 0.000000e+00 771.0
5 TraesCS1D01G185700 chr1A 96.468 1529 33 12 787 2302 330088591 330087071 0.000000e+00 2505.0
6 TraesCS1D01G185700 chr1A 93.951 529 31 1 1 529 330146920 330146393 0.000000e+00 798.0
7 TraesCS1D01G185700 chr1A 96.032 378 13 2 1793 2169 330087328 330086952 4.730000e-172 614.0
8 TraesCS1D01G185700 chr1A 86.933 551 65 5 1 550 63810181 63810725 1.700000e-171 612.0
9 TraesCS1D01G185700 chr1A 91.579 380 8 1 2203 2558 330086948 330086569 1.070000e-138 503.0
10 TraesCS1D01G185700 chr1A 96.124 258 5 2 2045 2302 330087575 330087323 1.430000e-112 416.0
11 TraesCS1D01G185700 chr1A 91.566 249 14 4 528 776 330135710 330135469 1.150000e-88 337.0
12 TraesCS1D01G185700 chr1A 97.619 126 3 0 1793 1918 330087076 330086951 1.560000e-52 217.0
13 TraesCS1D01G185700 chr1A 93.000 100 6 1 1952 2050 330086948 330086849 7.460000e-31 145.0
14 TraesCS1D01G185700 chr4A 88.889 495 50 2 5 497 91594328 91593837 2.850000e-169 604.0
15 TraesCS1D01G185700 chr7A 85.461 564 74 6 1 561 11264676 11265234 4.790000e-162 580.0
16 TraesCS1D01G185700 chr7A 84.359 569 80 7 4 569 3997256 3996694 1.350000e-152 549.0
17 TraesCS1D01G185700 chr7D 85.481 551 72 6 1 548 497983149 497983694 3.730000e-158 568.0
18 TraesCS1D01G185700 chr6A 84.929 564 73 10 4 562 32503942 32503386 6.250000e-156 560.0
19 TraesCS1D01G185700 chr3D 84.725 563 75 9 4 561 22681627 22681071 1.050000e-153 553.0
20 TraesCS1D01G185700 chr4B 80.897 602 96 14 987 1571 673474691 673474092 8.430000e-125 457.0
21 TraesCS1D01G185700 chr4D 81.921 531 88 7 1047 1571 491345726 491346254 2.360000e-120 442.0
22 TraesCS1D01G185700 chr5A 82.546 487 77 7 1047 1527 707532579 707533063 3.080000e-114 422.0
23 TraesCS1D01G185700 chr2B 88.636 44 4 1 959 1001 537427120 537427163 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G185700 chr1D 256783497 256786081 2584 True 1872.666667 4774 97.4260 1 2585 3 chr1D.!!$R1 2584
1 TraesCS1D01G185700 chr1B 356449643 356451992 2349 False 2024.000000 3277 93.8205 1 2585 2 chr1B.!!$F1 2584
2 TraesCS1D01G185700 chr1A 330146393 330146920 527 True 798.000000 798 93.9510 1 529 1 chr1A.!!$R2 528
3 TraesCS1D01G185700 chr1A 330086569 330088591 2022 True 733.333333 2505 95.1370 787 2558 6 chr1A.!!$R3 1771
4 TraesCS1D01G185700 chr1A 63810181 63810725 544 False 612.000000 612 86.9330 1 550 1 chr1A.!!$F1 549
5 TraesCS1D01G185700 chr7A 11264676 11265234 558 False 580.000000 580 85.4610 1 561 1 chr7A.!!$F1 560
6 TraesCS1D01G185700 chr7A 3996694 3997256 562 True 549.000000 549 84.3590 4 569 1 chr7A.!!$R1 565
7 TraesCS1D01G185700 chr7D 497983149 497983694 545 False 568.000000 568 85.4810 1 548 1 chr7D.!!$F1 547
8 TraesCS1D01G185700 chr6A 32503386 32503942 556 True 560.000000 560 84.9290 4 562 1 chr6A.!!$R1 558
9 TraesCS1D01G185700 chr3D 22681071 22681627 556 True 553.000000 553 84.7250 4 561 1 chr3D.!!$R1 557
10 TraesCS1D01G185700 chr4B 673474092 673474691 599 True 457.000000 457 80.8970 987 1571 1 chr4B.!!$R1 584
11 TraesCS1D01G185700 chr4D 491345726 491346254 528 False 442.000000 442 81.9210 1047 1571 1 chr4D.!!$F1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
591 594 1.002868 GTGCTGCATCTGGTCACCT 60.003 57.895 5.27 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1932 2216 0.179004 AGGCAAATGAACACACGGGA 60.179 50.0 0.0 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 3.982475 TCAAGATATGCTTAGAGGCACG 58.018 45.455 0.00 0.00 45.36 5.34
119 120 1.153549 GCTTAGAGGCACGACTGGG 60.154 63.158 0.00 0.00 0.00 4.45
204 206 7.094805 GGTGTGAAGATGTATTAACAGCAGAAA 60.095 37.037 2.96 0.00 44.60 2.52
277 279 5.757886 CAATCATGTTGTTGTTAACTCCGT 58.242 37.500 7.22 0.00 0.00 4.69
387 389 5.459110 TTGCGATTTTCCGTGTATTAGAC 57.541 39.130 0.00 0.00 0.00 2.59
419 421 9.520204 CATTGTAATAGGGAAGCAAATAAAGTG 57.480 33.333 0.00 0.00 0.00 3.16
429 431 5.927281 AGCAAATAAAGTGGCTGATGAAT 57.073 34.783 0.00 0.00 34.83 2.57
591 594 1.002868 GTGCTGCATCTGGTCACCT 60.003 57.895 5.27 0.00 0.00 4.00
600 603 1.967319 TCTGGTCACCTTCAAAGCAC 58.033 50.000 0.00 0.00 0.00 4.40
608 611 1.680735 ACCTTCAAAGCACGCATGAAA 59.319 42.857 0.00 0.00 33.08 2.69
611 614 1.752753 TCAAAGCACGCATGAAAACG 58.247 45.000 0.00 0.00 0.00 3.60
643 646 6.467677 ACTAGCACAAAACTGATAGTGATGT 58.532 36.000 0.00 0.00 40.92 3.06
782 790 8.971073 CACAGTCCTTATTCATAAATTTCCCTT 58.029 33.333 0.00 0.00 0.00 3.95
783 791 9.547279 ACAGTCCTTATTCATAAATTTCCCTTT 57.453 29.630 0.00 0.00 0.00 3.11
785 793 9.768215 AGTCCTTATTCATAAATTTCCCTTTCA 57.232 29.630 0.00 0.00 0.00 2.69
845 859 1.481056 CCCAAGGGACCGAGTGTTCT 61.481 60.000 0.00 0.00 37.50 3.01
900 922 2.282391 TCGCTGCAAATGGTGGCT 60.282 55.556 0.00 0.00 0.00 4.75
1197 1231 2.203788 TGGGGCGAGAACCTCACT 60.204 61.111 0.00 0.00 34.34 3.41
1599 1636 6.060788 GGCAATATGAATCTCTTCCTGTTCT 58.939 40.000 0.00 0.00 0.00 3.01
1917 2201 5.108187 AGAGTGCATTGTGGATTACTCAT 57.892 39.130 0.00 0.00 37.57 2.90
1956 2240 2.033299 CGTGTGTTCATTTGCCTGTCTT 59.967 45.455 0.00 0.00 0.00 3.01
1957 2241 3.632189 GTGTGTTCATTTGCCTGTCTTC 58.368 45.455 0.00 0.00 0.00 2.87
1958 2242 3.316308 GTGTGTTCATTTGCCTGTCTTCT 59.684 43.478 0.00 0.00 0.00 2.85
1959 2243 3.316029 TGTGTTCATTTGCCTGTCTTCTG 59.684 43.478 0.00 0.00 0.00 3.02
1960 2244 3.565482 GTGTTCATTTGCCTGTCTTCTGA 59.435 43.478 0.00 0.00 0.00 3.27
1961 2245 4.217118 GTGTTCATTTGCCTGTCTTCTGAT 59.783 41.667 0.00 0.00 0.00 2.90
1962 2246 4.216902 TGTTCATTTGCCTGTCTTCTGATG 59.783 41.667 0.00 0.00 0.00 3.07
1963 2247 4.025040 TCATTTGCCTGTCTTCTGATGT 57.975 40.909 0.00 0.00 0.00 3.06
1964 2248 3.754850 TCATTTGCCTGTCTTCTGATGTG 59.245 43.478 0.00 0.00 0.00 3.21
1965 2249 2.189594 TTGCCTGTCTTCTGATGTGG 57.810 50.000 0.00 0.00 0.00 4.17
1966 2250 1.059098 TGCCTGTCTTCTGATGTGGT 58.941 50.000 0.00 0.00 0.00 4.16
1967 2251 1.421268 TGCCTGTCTTCTGATGTGGTT 59.579 47.619 0.00 0.00 0.00 3.67
1968 2252 2.079925 GCCTGTCTTCTGATGTGGTTC 58.920 52.381 0.00 0.00 0.00 3.62
1969 2253 2.341257 CCTGTCTTCTGATGTGGTTCG 58.659 52.381 0.00 0.00 0.00 3.95
1970 2254 2.289072 CCTGTCTTCTGATGTGGTTCGT 60.289 50.000 0.00 0.00 0.00 3.85
1971 2255 2.733552 CTGTCTTCTGATGTGGTTCGTG 59.266 50.000 0.00 0.00 0.00 4.35
1972 2256 2.069273 GTCTTCTGATGTGGTTCGTGG 58.931 52.381 0.00 0.00 0.00 4.94
1973 2257 1.001974 TCTTCTGATGTGGTTCGTGGG 59.998 52.381 0.00 0.00 0.00 4.61
1974 2258 0.036164 TTCTGATGTGGTTCGTGGGG 59.964 55.000 0.00 0.00 0.00 4.96
1975 2259 2.033448 TGATGTGGTTCGTGGGGC 59.967 61.111 0.00 0.00 0.00 5.80
1976 2260 2.351276 GATGTGGTTCGTGGGGCT 59.649 61.111 0.00 0.00 0.00 5.19
1977 2261 1.303317 GATGTGGTTCGTGGGGCTT 60.303 57.895 0.00 0.00 0.00 4.35
1978 2262 1.303317 ATGTGGTTCGTGGGGCTTC 60.303 57.895 0.00 0.00 0.00 3.86
1979 2263 2.063015 ATGTGGTTCGTGGGGCTTCA 62.063 55.000 0.00 0.00 0.00 3.02
1980 2264 1.966451 GTGGTTCGTGGGGCTTCAG 60.966 63.158 0.00 0.00 0.00 3.02
1981 2265 2.144078 TGGTTCGTGGGGCTTCAGA 61.144 57.895 0.00 0.00 0.00 3.27
1982 2266 1.072505 GGTTCGTGGGGCTTCAGAA 59.927 57.895 0.00 0.00 0.00 3.02
1983 2267 0.322546 GGTTCGTGGGGCTTCAGAAT 60.323 55.000 0.00 0.00 0.00 2.40
1984 2268 1.534729 GTTCGTGGGGCTTCAGAATT 58.465 50.000 0.00 0.00 0.00 2.17
1985 2269 1.886542 GTTCGTGGGGCTTCAGAATTT 59.113 47.619 0.00 0.00 0.00 1.82
1986 2270 2.286365 TCGTGGGGCTTCAGAATTTT 57.714 45.000 0.00 0.00 0.00 1.82
1987 2271 3.426787 TCGTGGGGCTTCAGAATTTTA 57.573 42.857 0.00 0.00 0.00 1.52
1988 2272 3.963129 TCGTGGGGCTTCAGAATTTTAT 58.037 40.909 0.00 0.00 0.00 1.40
1989 2273 3.694072 TCGTGGGGCTTCAGAATTTTATG 59.306 43.478 0.00 0.00 0.00 1.90
1990 2274 3.694072 CGTGGGGCTTCAGAATTTTATGA 59.306 43.478 0.00 0.00 0.00 2.15
1991 2275 4.157656 CGTGGGGCTTCAGAATTTTATGAA 59.842 41.667 0.95 0.95 36.19 2.57
2000 2284 8.670804 CTTCAGAATTTTATGAAGCTGTTCTG 57.329 34.615 13.03 0.00 45.74 3.02
2001 2285 7.984422 TCAGAATTTTATGAAGCTGTTCTGA 57.016 32.000 9.97 9.97 44.36 3.27
2002 2286 8.037382 TCAGAATTTTATGAAGCTGTTCTGAG 57.963 34.615 9.97 0.00 42.77 3.35
2003 2287 7.120285 TCAGAATTTTATGAAGCTGTTCTGAGG 59.880 37.037 9.97 0.00 42.77 3.86
2004 2288 6.944862 AGAATTTTATGAAGCTGTTCTGAGGT 59.055 34.615 0.00 0.00 33.38 3.85
2005 2289 7.449704 AGAATTTTATGAAGCTGTTCTGAGGTT 59.550 33.333 0.00 0.00 36.38 3.50
2006 2290 5.947228 TTTATGAAGCTGTTCTGAGGTTG 57.053 39.130 0.00 0.00 33.83 3.77
2007 2291 3.777106 ATGAAGCTGTTCTGAGGTTGA 57.223 42.857 0.00 0.00 33.83 3.18
2008 2292 3.777106 TGAAGCTGTTCTGAGGTTGAT 57.223 42.857 0.00 0.00 33.83 2.57
2009 2293 3.405831 TGAAGCTGTTCTGAGGTTGATG 58.594 45.455 0.00 0.00 33.83 3.07
2010 2294 2.486472 AGCTGTTCTGAGGTTGATGG 57.514 50.000 0.00 0.00 0.00 3.51
2011 2295 1.701847 AGCTGTTCTGAGGTTGATGGT 59.298 47.619 0.00 0.00 0.00 3.55
2012 2296 2.107204 AGCTGTTCTGAGGTTGATGGTT 59.893 45.455 0.00 0.00 0.00 3.67
2013 2297 2.887152 GCTGTTCTGAGGTTGATGGTTT 59.113 45.455 0.00 0.00 0.00 3.27
2014 2298 4.072131 GCTGTTCTGAGGTTGATGGTTTA 58.928 43.478 0.00 0.00 0.00 2.01
2015 2299 4.702131 GCTGTTCTGAGGTTGATGGTTTAT 59.298 41.667 0.00 0.00 0.00 1.40
2016 2300 5.880332 GCTGTTCTGAGGTTGATGGTTTATA 59.120 40.000 0.00 0.00 0.00 0.98
2017 2301 6.037610 GCTGTTCTGAGGTTGATGGTTTATAG 59.962 42.308 0.00 0.00 0.00 1.31
2018 2302 5.880332 TGTTCTGAGGTTGATGGTTTATAGC 59.120 40.000 0.00 0.00 0.00 2.97
2019 2303 5.957771 TCTGAGGTTGATGGTTTATAGCT 57.042 39.130 0.00 0.00 0.00 3.32
2020 2304 7.093068 TGTTCTGAGGTTGATGGTTTATAGCTA 60.093 37.037 0.00 0.00 0.00 3.32
2021 2305 7.618019 TCTGAGGTTGATGGTTTATAGCTAT 57.382 36.000 11.77 11.77 0.00 2.97
2022 2306 7.445121 TCTGAGGTTGATGGTTTATAGCTATG 58.555 38.462 16.77 0.00 0.00 2.23
2023 2307 5.997746 TGAGGTTGATGGTTTATAGCTATGC 59.002 40.000 16.77 6.39 0.00 3.14
2024 2308 5.316987 AGGTTGATGGTTTATAGCTATGCC 58.683 41.667 16.77 14.86 0.00 4.40
2025 2309 4.459337 GGTTGATGGTTTATAGCTATGCCC 59.541 45.833 16.77 12.71 0.00 5.36
2026 2310 3.937814 TGATGGTTTATAGCTATGCCCG 58.062 45.455 16.77 0.00 0.00 6.13
2027 2311 2.178912 TGGTTTATAGCTATGCCCGC 57.821 50.000 16.77 2.36 0.00 6.13
2028 2312 1.418264 TGGTTTATAGCTATGCCCGCA 59.582 47.619 16.77 0.00 0.00 5.69
2029 2313 2.039746 TGGTTTATAGCTATGCCCGCAT 59.960 45.455 16.77 7.43 40.19 4.73
2030 2314 2.420022 GGTTTATAGCTATGCCCGCATG 59.580 50.000 16.77 3.97 37.82 4.06
2031 2315 2.401583 TTATAGCTATGCCCGCATGG 57.598 50.000 16.77 10.42 37.82 3.66
2050 2334 1.826385 GGCACCTATGTTCTGTTGCT 58.174 50.000 0.00 0.00 0.00 3.91
2051 2335 1.470098 GGCACCTATGTTCTGTTGCTG 59.530 52.381 0.00 0.00 0.00 4.41
2052 2336 2.426522 GCACCTATGTTCTGTTGCTGA 58.573 47.619 0.00 0.00 0.00 4.26
2053 2337 2.417933 GCACCTATGTTCTGTTGCTGAG 59.582 50.000 0.00 0.00 0.00 3.35
2054 2338 2.417933 CACCTATGTTCTGTTGCTGAGC 59.582 50.000 0.00 0.00 0.00 4.26
2055 2339 2.038952 ACCTATGTTCTGTTGCTGAGCA 59.961 45.455 1.40 1.40 36.47 4.26
2056 2340 3.076621 CCTATGTTCTGTTGCTGAGCAA 58.923 45.455 17.04 17.04 46.80 3.91
2070 2354 6.915544 TGCTGAGCAATAAGAGTCTATTTG 57.084 37.500 3.81 9.55 34.76 2.32
2071 2355 6.643388 TGCTGAGCAATAAGAGTCTATTTGA 58.357 36.000 3.81 0.00 34.76 2.69
2072 2356 7.278135 TGCTGAGCAATAAGAGTCTATTTGAT 58.722 34.615 3.81 10.95 34.76 2.57
2073 2357 8.424133 TGCTGAGCAATAAGAGTCTATTTGATA 58.576 33.333 3.81 0.00 34.76 2.15
2074 2358 9.434420 GCTGAGCAATAAGAGTCTATTTGATAT 57.566 33.333 15.62 0.00 0.00 1.63
2083 2367 6.952743 AGAGTCTATTTGATATTTTGCAGCG 58.047 36.000 0.00 0.00 0.00 5.18
2084 2368 6.763135 AGAGTCTATTTGATATTTTGCAGCGA 59.237 34.615 0.00 0.00 0.00 4.93
2085 2369 7.443575 AGAGTCTATTTGATATTTTGCAGCGAT 59.556 33.333 0.00 0.00 0.00 4.58
2086 2370 7.934457 AGTCTATTTGATATTTTGCAGCGATT 58.066 30.769 0.00 0.00 0.00 3.34
2087 2371 9.056005 AGTCTATTTGATATTTTGCAGCGATTA 57.944 29.630 0.00 0.00 0.00 1.75
2088 2372 9.107367 GTCTATTTGATATTTTGCAGCGATTAC 57.893 33.333 0.00 0.00 0.00 1.89
2089 2373 8.835439 TCTATTTGATATTTTGCAGCGATTACA 58.165 29.630 0.00 0.00 0.00 2.41
2090 2374 7.919313 ATTTGATATTTTGCAGCGATTACAG 57.081 32.000 0.00 0.00 0.00 2.74
2091 2375 6.435430 TTGATATTTTGCAGCGATTACAGT 57.565 33.333 0.00 0.00 0.00 3.55
2092 2376 6.435430 TGATATTTTGCAGCGATTACAGTT 57.565 33.333 0.00 0.00 0.00 3.16
2093 2377 6.257423 TGATATTTTGCAGCGATTACAGTTG 58.743 36.000 0.00 0.00 0.00 3.16
2094 2378 3.980646 TTTTGCAGCGATTACAGTTGT 57.019 38.095 0.00 0.00 0.00 3.32
2095 2379 2.967459 TTGCAGCGATTACAGTTGTG 57.033 45.000 0.00 0.00 0.00 3.33
2096 2380 2.162319 TGCAGCGATTACAGTTGTGA 57.838 45.000 0.00 0.00 0.00 3.58
2097 2381 2.488952 TGCAGCGATTACAGTTGTGAA 58.511 42.857 0.00 0.00 0.00 3.18
2098 2382 2.875317 TGCAGCGATTACAGTTGTGAAA 59.125 40.909 0.00 0.00 0.00 2.69
2099 2383 3.226347 GCAGCGATTACAGTTGTGAAAC 58.774 45.455 0.00 0.00 37.35 2.78
2115 2399 6.875948 TGTGAAACATGTACTGCAGTATTT 57.124 33.333 28.37 22.85 45.67 1.40
2116 2400 7.971183 TGTGAAACATGTACTGCAGTATTTA 57.029 32.000 28.37 18.04 45.67 1.40
2117 2401 8.028540 TGTGAAACATGTACTGCAGTATTTAG 57.971 34.615 28.37 19.71 45.67 1.85
2118 2402 7.659799 TGTGAAACATGTACTGCAGTATTTAGT 59.340 33.333 28.37 20.28 45.67 2.24
2119 2403 9.146984 GTGAAACATGTACTGCAGTATTTAGTA 57.853 33.333 28.37 11.97 36.32 1.82
2120 2404 9.713713 TGAAACATGTACTGCAGTATTTAGTAA 57.286 29.630 28.37 3.51 32.54 2.24
2122 2406 9.938280 AAACATGTACTGCAGTATTTAGTAAGA 57.062 29.630 28.37 5.57 32.54 2.10
2123 2407 9.938280 AACATGTACTGCAGTATTTAGTAAGAA 57.062 29.630 28.37 1.33 32.54 2.52
2127 2411 9.938280 TGTACTGCAGTATTTAGTAAGAATGTT 57.062 29.630 28.37 0.00 32.54 2.71
2132 2416 9.719355 TGCAGTATTTAGTAAGAATGTTCTTCA 57.281 29.630 11.02 0.00 43.72 3.02
2153 2437 7.849804 TTCAGTTTGAAGAGGATAATAGTGC 57.150 36.000 0.00 0.00 31.83 4.40
2154 2438 6.946340 TCAGTTTGAAGAGGATAATAGTGCA 58.054 36.000 0.00 0.00 0.00 4.57
2155 2439 7.568349 TCAGTTTGAAGAGGATAATAGTGCAT 58.432 34.615 0.00 0.00 0.00 3.96
2156 2440 8.049117 TCAGTTTGAAGAGGATAATAGTGCATT 58.951 33.333 0.00 0.00 0.00 3.56
2157 2441 8.127327 CAGTTTGAAGAGGATAATAGTGCATTG 58.873 37.037 0.00 0.00 0.00 2.82
2158 2442 7.831193 AGTTTGAAGAGGATAATAGTGCATTGT 59.169 33.333 0.00 0.00 0.00 2.71
2159 2443 7.558161 TTGAAGAGGATAATAGTGCATTGTG 57.442 36.000 0.00 0.00 0.00 3.33
2160 2444 6.057533 TGAAGAGGATAATAGTGCATTGTGG 58.942 40.000 0.00 0.00 0.00 4.17
2161 2445 5.894298 AGAGGATAATAGTGCATTGTGGA 57.106 39.130 0.00 0.00 0.00 4.02
2162 2446 6.445451 AGAGGATAATAGTGCATTGTGGAT 57.555 37.500 0.00 0.00 0.00 3.41
2163 2447 6.845908 AGAGGATAATAGTGCATTGTGGATT 58.154 36.000 0.00 0.00 0.00 3.01
2164 2448 7.977818 AGAGGATAATAGTGCATTGTGGATTA 58.022 34.615 0.00 0.00 0.00 1.75
2165 2449 7.880195 AGAGGATAATAGTGCATTGTGGATTAC 59.120 37.037 0.00 0.00 0.00 1.89
2166 2450 7.749666 AGGATAATAGTGCATTGTGGATTACT 58.250 34.615 0.00 0.00 0.00 2.24
2167 2451 7.880195 AGGATAATAGTGCATTGTGGATTACTC 59.120 37.037 0.00 0.00 0.00 2.59
2168 2452 7.661437 GGATAATAGTGCATTGTGGATTACTCA 59.339 37.037 0.00 0.00 0.00 3.41
2169 2453 6.932356 AATAGTGCATTGTGGATTACTCAG 57.068 37.500 0.00 0.00 0.00 3.35
2170 2454 3.614092 AGTGCATTGTGGATTACTCAGG 58.386 45.455 0.00 0.00 0.00 3.86
2171 2455 3.009473 AGTGCATTGTGGATTACTCAGGT 59.991 43.478 0.00 0.00 0.00 4.00
2172 2456 3.758554 GTGCATTGTGGATTACTCAGGTT 59.241 43.478 0.00 0.00 0.00 3.50
2173 2457 4.218417 GTGCATTGTGGATTACTCAGGTTT 59.782 41.667 0.00 0.00 0.00 3.27
2174 2458 4.832266 TGCATTGTGGATTACTCAGGTTTT 59.168 37.500 0.00 0.00 0.00 2.43
2175 2459 5.048083 TGCATTGTGGATTACTCAGGTTTTC 60.048 40.000 0.00 0.00 0.00 2.29
2176 2460 5.048083 GCATTGTGGATTACTCAGGTTTTCA 60.048 40.000 0.00 0.00 0.00 2.69
2177 2461 6.350445 GCATTGTGGATTACTCAGGTTTTCAT 60.350 38.462 0.00 0.00 0.00 2.57
2178 2462 6.573664 TTGTGGATTACTCAGGTTTTCATG 57.426 37.500 0.00 0.00 0.00 3.07
2179 2463 4.458989 TGTGGATTACTCAGGTTTTCATGC 59.541 41.667 0.00 0.00 0.00 4.06
2187 2471 1.080569 GGTTTTCATGCCTGTGCCG 60.081 57.895 0.00 0.00 36.33 5.69
2194 2478 2.260869 ATGCCTGTGCCGTGTGTTC 61.261 57.895 0.00 0.00 36.33 3.18
2275 2781 6.183361 TGAGGTTGATGGTTTATAGCTATGCT 60.183 38.462 16.77 0.00 43.41 3.79
2276 2782 6.234177 AGGTTGATGGTTTATAGCTATGCTC 58.766 40.000 16.77 6.00 40.44 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 2.736347 TCTCTAAGTACTGCCCCAGTC 58.264 52.381 0.00 0.00 41.21 3.51
119 120 5.105310 TCCTTTGTCATCTCTAAGTACTGCC 60.105 44.000 0.00 0.00 0.00 4.85
204 206 0.249955 CCAAATCGCAGGGCCAAAAT 59.750 50.000 6.18 0.00 0.00 1.82
387 389 6.757897 TGCTTCCCTATTACAATGTTCAAG 57.242 37.500 0.00 0.00 0.00 3.02
419 421 2.305009 AGCCTAGCAAATTCATCAGCC 58.695 47.619 0.00 0.00 0.00 4.85
451 453 3.437213 TCGAACCAATCCCTAGTCTCAA 58.563 45.455 0.00 0.00 0.00 3.02
562 565 3.183574 CAGATGCAGCACACAATTGTTTG 59.816 43.478 18.38 18.38 38.86 2.93
591 594 2.115595 CGTTTTCATGCGTGCTTTGAA 58.884 42.857 0.00 6.68 0.00 2.69
600 603 1.778591 GTGTTTGGACGTTTTCATGCG 59.221 47.619 0.00 0.00 0.00 4.73
608 611 2.319136 TGTGCTAGTGTTTGGACGTT 57.681 45.000 0.00 0.00 0.00 3.99
611 614 4.095782 TCAGTTTTGTGCTAGTGTTTGGAC 59.904 41.667 0.00 0.00 0.00 4.02
737 740 5.091261 TGTGTTTGGTACCTGCAATTTTT 57.909 34.783 14.36 0.00 0.00 1.94
741 749 2.884639 GACTGTGTTTGGTACCTGCAAT 59.115 45.455 14.36 0.00 0.00 3.56
747 755 5.310451 TGAATAAGGACTGTGTTTGGTACC 58.690 41.667 4.43 4.43 0.00 3.34
845 859 2.825075 TAGGCGGTGCGTGGACTCTA 62.825 60.000 0.00 0.00 0.00 2.43
900 922 0.382515 AGTTTTGCCGCTTTACGCAA 59.617 45.000 0.00 0.00 41.76 4.85
1197 1231 0.971959 ACCCGATGCCCGTGTAGTAA 60.972 55.000 0.00 0.00 36.31 2.24
1917 2201 0.958091 CGGGAACAGGCATGAAAACA 59.042 50.000 4.84 0.00 0.00 2.83
1932 2216 0.179004 AGGCAAATGAACACACGGGA 60.179 50.000 0.00 0.00 0.00 5.14
1956 2240 1.676968 CCCCACGAACCACATCAGA 59.323 57.895 0.00 0.00 0.00 3.27
1957 2241 2.040544 GCCCCACGAACCACATCAG 61.041 63.158 0.00 0.00 0.00 2.90
1958 2242 2.033448 GCCCCACGAACCACATCA 59.967 61.111 0.00 0.00 0.00 3.07
1959 2243 1.303317 AAGCCCCACGAACCACATC 60.303 57.895 0.00 0.00 0.00 3.06
1960 2244 1.303317 GAAGCCCCACGAACCACAT 60.303 57.895 0.00 0.00 0.00 3.21
1961 2245 2.112297 GAAGCCCCACGAACCACA 59.888 61.111 0.00 0.00 0.00 4.17
1962 2246 1.966451 CTGAAGCCCCACGAACCAC 60.966 63.158 0.00 0.00 0.00 4.16
1963 2247 1.701031 TTCTGAAGCCCCACGAACCA 61.701 55.000 0.00 0.00 0.00 3.67
1964 2248 0.322546 ATTCTGAAGCCCCACGAACC 60.323 55.000 0.00 0.00 0.00 3.62
1965 2249 1.534729 AATTCTGAAGCCCCACGAAC 58.465 50.000 0.00 0.00 0.00 3.95
1966 2250 2.286365 AAATTCTGAAGCCCCACGAA 57.714 45.000 0.00 0.00 0.00 3.85
1967 2251 2.286365 AAAATTCTGAAGCCCCACGA 57.714 45.000 0.00 0.00 0.00 4.35
1968 2252 3.694072 TCATAAAATTCTGAAGCCCCACG 59.306 43.478 0.00 0.00 0.00 4.94
1969 2253 5.654497 CTTCATAAAATTCTGAAGCCCCAC 58.346 41.667 7.93 0.00 41.20 4.61
1970 2254 5.920193 CTTCATAAAATTCTGAAGCCCCA 57.080 39.130 7.93 0.00 41.20 4.96
1975 2259 8.509690 TCAGAACAGCTTCATAAAATTCTGAAG 58.490 33.333 13.82 13.82 44.50 3.02
1976 2260 8.394971 TCAGAACAGCTTCATAAAATTCTGAA 57.605 30.769 10.48 0.00 44.50 3.02
1977 2261 7.120285 CCTCAGAACAGCTTCATAAAATTCTGA 59.880 37.037 11.93 11.93 44.98 3.27
1978 2262 7.094463 ACCTCAGAACAGCTTCATAAAATTCTG 60.094 37.037 5.00 5.00 41.78 3.02
1979 2263 6.944862 ACCTCAGAACAGCTTCATAAAATTCT 59.055 34.615 0.00 0.00 0.00 2.40
1980 2264 7.150783 ACCTCAGAACAGCTTCATAAAATTC 57.849 36.000 0.00 0.00 0.00 2.17
1981 2265 7.231317 TCAACCTCAGAACAGCTTCATAAAATT 59.769 33.333 0.00 0.00 0.00 1.82
1982 2266 6.716628 TCAACCTCAGAACAGCTTCATAAAAT 59.283 34.615 0.00 0.00 0.00 1.82
1983 2267 6.061441 TCAACCTCAGAACAGCTTCATAAAA 58.939 36.000 0.00 0.00 0.00 1.52
1984 2268 5.620206 TCAACCTCAGAACAGCTTCATAAA 58.380 37.500 0.00 0.00 0.00 1.40
1985 2269 5.227569 TCAACCTCAGAACAGCTTCATAA 57.772 39.130 0.00 0.00 0.00 1.90
1986 2270 4.890158 TCAACCTCAGAACAGCTTCATA 57.110 40.909 0.00 0.00 0.00 2.15
1987 2271 3.777106 TCAACCTCAGAACAGCTTCAT 57.223 42.857 0.00 0.00 0.00 2.57
1988 2272 3.405831 CATCAACCTCAGAACAGCTTCA 58.594 45.455 0.00 0.00 0.00 3.02
1989 2273 2.746362 CCATCAACCTCAGAACAGCTTC 59.254 50.000 0.00 0.00 0.00 3.86
1990 2274 2.107204 ACCATCAACCTCAGAACAGCTT 59.893 45.455 0.00 0.00 0.00 3.74
1991 2275 1.701847 ACCATCAACCTCAGAACAGCT 59.298 47.619 0.00 0.00 0.00 4.24
1992 2276 2.191128 ACCATCAACCTCAGAACAGC 57.809 50.000 0.00 0.00 0.00 4.40
1993 2277 6.037610 GCTATAAACCATCAACCTCAGAACAG 59.962 42.308 0.00 0.00 0.00 3.16
1994 2278 5.880332 GCTATAAACCATCAACCTCAGAACA 59.120 40.000 0.00 0.00 0.00 3.18
1995 2279 6.116126 AGCTATAAACCATCAACCTCAGAAC 58.884 40.000 0.00 0.00 0.00 3.01
1996 2280 6.313519 AGCTATAAACCATCAACCTCAGAA 57.686 37.500 0.00 0.00 0.00 3.02
1997 2281 5.957771 AGCTATAAACCATCAACCTCAGA 57.042 39.130 0.00 0.00 0.00 3.27
1998 2282 6.148480 GCATAGCTATAAACCATCAACCTCAG 59.852 42.308 5.77 0.00 0.00 3.35
1999 2283 5.997746 GCATAGCTATAAACCATCAACCTCA 59.002 40.000 5.77 0.00 0.00 3.86
2000 2284 5.412904 GGCATAGCTATAAACCATCAACCTC 59.587 44.000 5.77 0.00 0.00 3.85
2001 2285 5.316987 GGCATAGCTATAAACCATCAACCT 58.683 41.667 5.77 0.00 0.00 3.50
2002 2286 4.459337 GGGCATAGCTATAAACCATCAACC 59.541 45.833 5.77 0.00 0.00 3.77
2003 2287 4.154195 CGGGCATAGCTATAAACCATCAAC 59.846 45.833 5.77 0.00 0.00 3.18
2004 2288 4.323417 CGGGCATAGCTATAAACCATCAA 58.677 43.478 5.77 0.00 0.00 2.57
2005 2289 3.868369 GCGGGCATAGCTATAAACCATCA 60.868 47.826 5.77 0.00 0.00 3.07
2006 2290 2.678336 GCGGGCATAGCTATAAACCATC 59.322 50.000 5.77 1.22 0.00 3.51
2007 2291 2.039746 TGCGGGCATAGCTATAAACCAT 59.960 45.455 5.77 0.00 35.28 3.55
2008 2292 1.418264 TGCGGGCATAGCTATAAACCA 59.582 47.619 5.77 0.00 35.28 3.67
2009 2293 2.178912 TGCGGGCATAGCTATAAACC 57.821 50.000 5.77 8.36 35.28 3.27
2010 2294 2.420022 CCATGCGGGCATAGCTATAAAC 59.580 50.000 5.77 0.00 34.91 2.01
2011 2295 2.710377 CCATGCGGGCATAGCTATAAA 58.290 47.619 5.77 0.00 34.91 1.40
2012 2296 2.401583 CCATGCGGGCATAGCTATAA 57.598 50.000 5.77 0.00 34.91 0.98
2024 2308 1.447317 GAACATAGGTGCCCATGCGG 61.447 60.000 0.00 0.00 41.78 5.69
2025 2309 0.464373 AGAACATAGGTGCCCATGCG 60.464 55.000 0.00 0.00 41.78 4.73
2026 2310 1.027357 CAGAACATAGGTGCCCATGC 58.973 55.000 0.00 0.00 38.26 4.06
2027 2311 2.424601 CAACAGAACATAGGTGCCCATG 59.575 50.000 0.00 0.00 0.00 3.66
2028 2312 2.726821 CAACAGAACATAGGTGCCCAT 58.273 47.619 0.00 0.00 0.00 4.00
2029 2313 1.886222 GCAACAGAACATAGGTGCCCA 60.886 52.381 0.00 0.00 0.00 5.36
2030 2314 0.811281 GCAACAGAACATAGGTGCCC 59.189 55.000 0.00 0.00 0.00 5.36
2031 2315 1.470098 CAGCAACAGAACATAGGTGCC 59.530 52.381 0.00 0.00 0.00 5.01
2032 2316 2.417933 CTCAGCAACAGAACATAGGTGC 59.582 50.000 0.00 0.00 0.00 5.01
2033 2317 2.417933 GCTCAGCAACAGAACATAGGTG 59.582 50.000 0.00 0.00 0.00 4.00
2034 2318 2.038952 TGCTCAGCAACAGAACATAGGT 59.961 45.455 0.00 0.00 34.76 3.08
2035 2319 2.703416 TGCTCAGCAACAGAACATAGG 58.297 47.619 0.00 0.00 34.76 2.57
2047 2331 6.643388 TCAAATAGACTCTTATTGCTCAGCA 58.357 36.000 0.00 0.00 36.47 4.41
2048 2332 7.727331 ATCAAATAGACTCTTATTGCTCAGC 57.273 36.000 0.00 0.00 0.00 4.26
2057 2341 8.551205 CGCTGCAAAATATCAAATAGACTCTTA 58.449 33.333 0.00 0.00 0.00 2.10
2058 2342 7.280876 TCGCTGCAAAATATCAAATAGACTCTT 59.719 33.333 0.00 0.00 0.00 2.85
2059 2343 6.763135 TCGCTGCAAAATATCAAATAGACTCT 59.237 34.615 0.00 0.00 0.00 3.24
2060 2344 6.948353 TCGCTGCAAAATATCAAATAGACTC 58.052 36.000 0.00 0.00 0.00 3.36
2061 2345 6.925610 TCGCTGCAAAATATCAAATAGACT 57.074 33.333 0.00 0.00 0.00 3.24
2062 2346 9.107367 GTAATCGCTGCAAAATATCAAATAGAC 57.893 33.333 0.00 0.00 0.00 2.59
2063 2347 8.835439 TGTAATCGCTGCAAAATATCAAATAGA 58.165 29.630 0.00 0.00 0.00 1.98
2064 2348 9.110617 CTGTAATCGCTGCAAAATATCAAATAG 57.889 33.333 0.00 0.00 0.00 1.73
2065 2349 8.620416 ACTGTAATCGCTGCAAAATATCAAATA 58.380 29.630 0.00 0.00 0.00 1.40
2066 2350 7.483307 ACTGTAATCGCTGCAAAATATCAAAT 58.517 30.769 0.00 0.00 0.00 2.32
2067 2351 6.851609 ACTGTAATCGCTGCAAAATATCAAA 58.148 32.000 0.00 0.00 0.00 2.69
2068 2352 6.435430 ACTGTAATCGCTGCAAAATATCAA 57.565 33.333 0.00 0.00 0.00 2.57
2069 2353 6.128035 ACAACTGTAATCGCTGCAAAATATCA 60.128 34.615 0.00 0.00 0.00 2.15
2070 2354 6.195244 CACAACTGTAATCGCTGCAAAATATC 59.805 38.462 0.00 0.00 0.00 1.63
2071 2355 6.029607 CACAACTGTAATCGCTGCAAAATAT 58.970 36.000 0.00 0.00 0.00 1.28
2072 2356 5.180304 TCACAACTGTAATCGCTGCAAAATA 59.820 36.000 0.00 0.00 0.00 1.40
2073 2357 4.023279 TCACAACTGTAATCGCTGCAAAAT 60.023 37.500 0.00 0.00 0.00 1.82
2074 2358 3.313803 TCACAACTGTAATCGCTGCAAAA 59.686 39.130 0.00 0.00 0.00 2.44
2075 2359 2.875317 TCACAACTGTAATCGCTGCAAA 59.125 40.909 0.00 0.00 0.00 3.68
2076 2360 2.488952 TCACAACTGTAATCGCTGCAA 58.511 42.857 0.00 0.00 0.00 4.08
2077 2361 2.162319 TCACAACTGTAATCGCTGCA 57.838 45.000 0.00 0.00 0.00 4.41
2078 2362 3.226347 GTTTCACAACTGTAATCGCTGC 58.774 45.455 0.00 0.00 0.00 5.25
2079 2363 4.466567 TGTTTCACAACTGTAATCGCTG 57.533 40.909 0.00 0.00 33.58 5.18
2080 2364 4.515191 ACATGTTTCACAACTGTAATCGCT 59.485 37.500 0.00 0.00 33.58 4.93
2081 2365 4.783242 ACATGTTTCACAACTGTAATCGC 58.217 39.130 0.00 0.00 33.58 4.58
2082 2366 7.009440 CAGTACATGTTTCACAACTGTAATCG 58.991 38.462 2.30 0.00 32.60 3.34
2083 2367 6.797033 GCAGTACATGTTTCACAACTGTAATC 59.203 38.462 20.01 5.38 37.02 1.75
2084 2368 6.262049 TGCAGTACATGTTTCACAACTGTAAT 59.738 34.615 20.01 0.00 37.02 1.89
2085 2369 5.586643 TGCAGTACATGTTTCACAACTGTAA 59.413 36.000 20.01 10.21 37.02 2.41
2086 2370 5.119694 TGCAGTACATGTTTCACAACTGTA 58.880 37.500 20.01 15.27 37.02 2.74
2087 2371 3.944650 TGCAGTACATGTTTCACAACTGT 59.055 39.130 20.01 0.39 37.02 3.55
2088 2372 4.035558 ACTGCAGTACATGTTTCACAACTG 59.964 41.667 20.16 16.47 37.47 3.16
2089 2373 4.199310 ACTGCAGTACATGTTTCACAACT 58.801 39.130 20.16 0.00 33.58 3.16
2090 2374 4.552166 ACTGCAGTACATGTTTCACAAC 57.448 40.909 20.16 0.00 0.00 3.32
2091 2375 6.875948 AATACTGCAGTACATGTTTCACAA 57.124 33.333 28.28 4.02 32.72 3.33
2092 2376 6.875948 AAATACTGCAGTACATGTTTCACA 57.124 33.333 28.28 4.24 32.72 3.58
2093 2377 8.029642 ACTAAATACTGCAGTACATGTTTCAC 57.970 34.615 28.28 0.00 32.72 3.18
2094 2378 9.713713 TTACTAAATACTGCAGTACATGTTTCA 57.286 29.630 28.28 5.62 32.72 2.69
2096 2380 9.938280 TCTTACTAAATACTGCAGTACATGTTT 57.062 29.630 28.28 23.89 32.72 2.83
2097 2381 9.938280 TTCTTACTAAATACTGCAGTACATGTT 57.062 29.630 28.28 20.04 32.72 2.71
2101 2385 9.938280 AACATTCTTACTAAATACTGCAGTACA 57.062 29.630 28.28 15.22 32.72 2.90
2104 2388 9.726438 AAGAACATTCTTACTAAATACTGCAGT 57.274 29.630 25.12 25.12 45.17 4.40
2106 2390 9.719355 TGAAGAACATTCTTACTAAATACTGCA 57.281 29.630 6.85 0.00 46.84 4.41
2129 2413 7.394016 TGCACTATTATCCTCTTCAAACTGAA 58.606 34.615 0.00 0.00 34.79 3.02
2130 2414 6.946340 TGCACTATTATCCTCTTCAAACTGA 58.054 36.000 0.00 0.00 0.00 3.41
2131 2415 7.798596 ATGCACTATTATCCTCTTCAAACTG 57.201 36.000 0.00 0.00 0.00 3.16
2132 2416 7.831193 ACAATGCACTATTATCCTCTTCAAACT 59.169 33.333 0.00 0.00 0.00 2.66
2133 2417 7.912250 CACAATGCACTATTATCCTCTTCAAAC 59.088 37.037 0.00 0.00 0.00 2.93
2134 2418 7.067372 CCACAATGCACTATTATCCTCTTCAAA 59.933 37.037 0.00 0.00 0.00 2.69
2135 2419 6.543465 CCACAATGCACTATTATCCTCTTCAA 59.457 38.462 0.00 0.00 0.00 2.69
2136 2420 6.057533 CCACAATGCACTATTATCCTCTTCA 58.942 40.000 0.00 0.00 0.00 3.02
2137 2421 6.291377 TCCACAATGCACTATTATCCTCTTC 58.709 40.000 0.00 0.00 0.00 2.87
2138 2422 6.252599 TCCACAATGCACTATTATCCTCTT 57.747 37.500 0.00 0.00 0.00 2.85
2139 2423 5.894298 TCCACAATGCACTATTATCCTCT 57.106 39.130 0.00 0.00 0.00 3.69
2140 2424 7.880195 AGTAATCCACAATGCACTATTATCCTC 59.120 37.037 0.00 0.00 0.00 3.71
2141 2425 7.749666 AGTAATCCACAATGCACTATTATCCT 58.250 34.615 0.00 0.00 0.00 3.24
2142 2426 7.661437 TGAGTAATCCACAATGCACTATTATCC 59.339 37.037 0.00 0.00 0.00 2.59
2143 2427 8.607441 TGAGTAATCCACAATGCACTATTATC 57.393 34.615 0.00 0.00 0.00 1.75
2144 2428 7.663081 CCTGAGTAATCCACAATGCACTATTAT 59.337 37.037 0.00 0.00 0.00 1.28
2145 2429 6.992123 CCTGAGTAATCCACAATGCACTATTA 59.008 38.462 0.00 0.00 0.00 0.98
2146 2430 5.824624 CCTGAGTAATCCACAATGCACTATT 59.175 40.000 0.00 0.00 0.00 1.73
2147 2431 5.104360 ACCTGAGTAATCCACAATGCACTAT 60.104 40.000 0.00 0.00 0.00 2.12
2148 2432 4.225042 ACCTGAGTAATCCACAATGCACTA 59.775 41.667 0.00 0.00 0.00 2.74
2149 2433 3.009473 ACCTGAGTAATCCACAATGCACT 59.991 43.478 0.00 0.00 0.00 4.40
2150 2434 3.347216 ACCTGAGTAATCCACAATGCAC 58.653 45.455 0.00 0.00 0.00 4.57
2151 2435 3.719268 ACCTGAGTAATCCACAATGCA 57.281 42.857 0.00 0.00 0.00 3.96
2152 2436 5.048083 TGAAAACCTGAGTAATCCACAATGC 60.048 40.000 0.00 0.00 0.00 3.56
2153 2437 6.573664 TGAAAACCTGAGTAATCCACAATG 57.426 37.500 0.00 0.00 0.00 2.82
2154 2438 6.350445 GCATGAAAACCTGAGTAATCCACAAT 60.350 38.462 0.00 0.00 0.00 2.71
2155 2439 5.048083 GCATGAAAACCTGAGTAATCCACAA 60.048 40.000 0.00 0.00 0.00 3.33
2156 2440 4.458989 GCATGAAAACCTGAGTAATCCACA 59.541 41.667 0.00 0.00 0.00 4.17
2157 2441 4.142381 GGCATGAAAACCTGAGTAATCCAC 60.142 45.833 0.00 0.00 0.00 4.02
2158 2442 4.016444 GGCATGAAAACCTGAGTAATCCA 58.984 43.478 0.00 0.00 0.00 3.41
2159 2443 4.273318 AGGCATGAAAACCTGAGTAATCC 58.727 43.478 0.00 0.00 34.07 3.01
2168 2452 1.526575 CGGCACAGGCATGAAAACCT 61.527 55.000 4.84 0.00 43.71 3.50
2169 2453 1.080569 CGGCACAGGCATGAAAACC 60.081 57.895 4.84 0.00 43.71 3.27
2170 2454 0.664166 CACGGCACAGGCATGAAAAC 60.664 55.000 4.84 0.00 43.71 2.43
2171 2455 1.106351 ACACGGCACAGGCATGAAAA 61.106 50.000 4.84 0.00 43.71 2.29
2172 2456 1.528076 ACACGGCACAGGCATGAAA 60.528 52.632 4.84 0.00 43.71 2.69
2173 2457 2.112928 ACACGGCACAGGCATGAA 59.887 55.556 4.84 0.00 43.71 2.57
2174 2458 2.669229 CACACGGCACAGGCATGA 60.669 61.111 4.84 0.00 43.71 3.07
2175 2459 2.462255 GAACACACGGCACAGGCATG 62.462 60.000 0.00 0.00 43.71 4.06
2176 2460 2.203337 AACACACGGCACAGGCAT 60.203 55.556 0.00 0.00 43.71 4.40
2177 2461 2.899838 GAACACACGGCACAGGCA 60.900 61.111 0.00 0.00 43.71 4.75
2178 2462 1.795170 AATGAACACACGGCACAGGC 61.795 55.000 0.00 0.00 40.13 4.85
2179 2463 0.667993 AAATGAACACACGGCACAGG 59.332 50.000 0.00 0.00 0.00 4.00
2187 2471 3.316308 AGAAGACAGGCAAATGAACACAC 59.684 43.478 0.00 0.00 0.00 3.82
2194 2478 3.119602 CCACATCAGAAGACAGGCAAATG 60.120 47.826 0.00 0.00 0.00 2.32
2249 2533 6.656693 GCATAGCTATAAACCATCAACCTCAT 59.343 38.462 5.77 0.00 0.00 2.90
2287 2793 2.993899 ACGAGTCGCAAAAGAACATAGG 59.006 45.455 13.59 0.00 0.00 2.57
2544 3076 6.883744 ACTAAAGCTTTTTGAATCAAACCCA 58.116 32.000 18.47 0.00 32.79 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.