Multiple sequence alignment - TraesCS1D01G184600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G184600 chr1D 100.000 2507 0 0 1 2507 255428428 255425922 0.000000e+00 4630
1 TraesCS1D01G184600 chr1D 92.720 261 14 3 333 588 37188810 37188550 3.050000e-99 372
2 TraesCS1D01G184600 chr1D 85.987 157 13 7 2353 2507 378222438 378222587 2.580000e-35 159
3 TraesCS1D01G184600 chr1D 97.222 72 0 2 1 72 191339137 191339206 1.220000e-23 121
4 TraesCS1D01G184600 chr1D 98.276 58 1 0 2085 2142 255426286 255426229 4.410000e-18 102
5 TraesCS1D01G184600 chr1D 98.276 58 1 0 2143 2200 255426344 255426287 4.410000e-18 102
6 TraesCS1D01G184600 chr1A 92.295 1804 77 33 590 2352 327272276 327270494 0.000000e+00 2505
7 TraesCS1D01G184600 chr1A 89.172 157 15 2 2353 2507 327270460 327270304 7.080000e-46 195
8 TraesCS1D01G184600 chr1A 85.621 153 7 6 2353 2504 478912488 478912626 2.010000e-31 147
9 TraesCS1D01G184600 chr1A 98.276 58 1 0 2085 2142 327270703 327270646 4.410000e-18 102
10 TraesCS1D01G184600 chr1B 93.366 1432 53 13 586 1986 357469773 357471193 0.000000e+00 2080
11 TraesCS1D01G184600 chr4A 93.077 260 14 2 333 588 723602531 723602272 6.550000e-101 377
12 TraesCS1D01G184600 chr4A 90.650 246 19 3 68 309 519196084 519196329 8.650000e-85 324
13 TraesCS1D01G184600 chr7D 90.647 278 20 4 327 599 610813434 610813710 5.100000e-97 364
14 TraesCS1D01G184600 chr7D 91.011 267 20 2 326 588 148155692 148155426 8.530000e-95 357
15 TraesCS1D01G184600 chr2D 91.729 266 17 3 328 588 6206341 6206076 5.100000e-97 364
16 TraesCS1D01G184600 chr2D 87.500 208 23 2 117 321 391385085 391384878 1.160000e-58 237
17 TraesCS1D01G184600 chr2D 87.097 155 16 4 2353 2504 417612499 417612346 3.320000e-39 172
18 TraesCS1D01G184600 chr4D 90.876 274 19 4 326 593 500526489 500526216 1.830000e-96 363
19 TraesCS1D01G184600 chr4D 89.899 99 10 0 2216 2314 100775523 100775621 7.280000e-26 128
20 TraesCS1D01G184600 chr2B 91.603 262 18 2 331 588 634968432 634968171 2.370000e-95 359
21 TraesCS1D01G184600 chr2B 83.019 265 33 4 68 321 111465225 111464962 1.940000e-56 230
22 TraesCS1D01G184600 chr5A 91.011 267 20 2 333 595 614360414 614360148 8.530000e-95 357
23 TraesCS1D01G184600 chr3B 91.538 260 18 2 333 588 168523551 168523810 3.070000e-94 355
24 TraesCS1D01G184600 chr3B 97.333 75 1 1 1 74 763635125 763635199 2.620000e-25 126
25 TraesCS1D01G184600 chr7A 90.612 245 19 3 68 308 16241751 16241995 3.110000e-84 322
26 TraesCS1D01G184600 chr7B 90.244 246 20 2 68 309 722935141 722934896 4.020000e-83 318
27 TraesCS1D01G184600 chr7B 94.937 79 3 1 1 79 694532980 694532903 3.390000e-24 122
28 TraesCS1D01G184600 chr3D 88.664 247 22 5 68 309 91797113 91797358 1.890000e-76 296
29 TraesCS1D01G184600 chrUn 89.806 206 19 2 117 321 280985965 280985761 1.910000e-66 263
30 TraesCS1D01G184600 chrUn 89.806 206 19 2 117 321 281013794 281013590 1.910000e-66 263
31 TraesCS1D01G184600 chrUn 91.237 194 15 2 117 309 346329807 346329999 1.910000e-66 263
32 TraesCS1D01G184600 chrUn 100.000 68 0 0 1 68 154972206 154972139 2.620000e-25 126
33 TraesCS1D01G184600 chrUn 100.000 68 0 0 1 68 155054634 155054567 2.620000e-25 126
34 TraesCS1D01G184600 chrUn 100.000 68 0 0 1 68 239616649 239616716 2.620000e-25 126
35 TraesCS1D01G184600 chrUn 100.000 68 0 0 1 68 324367607 324367674 2.620000e-25 126
36 TraesCS1D01G184600 chr5D 89.189 148 13 3 2363 2507 360977885 360978032 5.510000e-42 182
37 TraesCS1D01G184600 chr5D 97.260 73 1 1 1 73 91724724 91724795 3.390000e-24 122
38 TraesCS1D01G184600 chr6D 100.000 68 0 0 1 68 297307567 297307500 2.620000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G184600 chr1D 255425922 255428428 2506 True 1611.333333 4630 98.850667 1 2507 3 chr1D.!!$R2 2506
1 TraesCS1D01G184600 chr1A 327270304 327272276 1972 True 934.000000 2505 93.247667 590 2507 3 chr1A.!!$R1 1917
2 TraesCS1D01G184600 chr1B 357469773 357471193 1420 False 2080.000000 2080 93.366000 586 1986 1 chr1B.!!$F1 1400

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 276 0.029433 TGCGAGATCCAGATCGAACG 59.971 55.0 6.30 15.10 42.48 3.95 F
277 278 0.039978 CGAGATCCAGATCGAACGGG 60.040 60.0 5.49 5.49 42.48 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1493 1503 0.574454 GATCGATCACTGCTTGTCGC 59.426 55.0 20.52 0.0 39.77 5.19 R
2205 2275 0.769873 AGGGCCAGCATATTCAGGAG 59.230 55.0 6.18 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.890808 TCTTAGTTATGCAGAGGCCG 57.109 50.000 0.00 0.00 40.13 6.13
20 21 1.412710 TCTTAGTTATGCAGAGGCCGG 59.587 52.381 0.00 0.00 40.13 6.13
21 22 0.468226 TTAGTTATGCAGAGGCCGGG 59.532 55.000 2.18 0.00 40.13 5.73
22 23 0.689745 TAGTTATGCAGAGGCCGGGT 60.690 55.000 2.18 0.00 40.13 5.28
23 24 1.819632 GTTATGCAGAGGCCGGGTG 60.820 63.158 2.18 0.00 40.13 4.61
24 25 2.297895 TTATGCAGAGGCCGGGTGT 61.298 57.895 2.18 0.00 40.13 4.16
25 26 0.978667 TTATGCAGAGGCCGGGTGTA 60.979 55.000 2.18 0.00 40.13 2.90
26 27 0.978667 TATGCAGAGGCCGGGTGTAA 60.979 55.000 2.18 0.00 40.13 2.41
27 28 1.635817 ATGCAGAGGCCGGGTGTAAT 61.636 55.000 2.18 0.00 40.13 1.89
28 29 1.819632 GCAGAGGCCGGGTGTAATG 60.820 63.158 2.18 0.00 0.00 1.90
29 30 1.819632 CAGAGGCCGGGTGTAATGC 60.820 63.158 2.18 0.00 0.00 3.56
30 31 1.995626 AGAGGCCGGGTGTAATGCT 60.996 57.895 2.18 0.00 0.00 3.79
31 32 1.077716 GAGGCCGGGTGTAATGCTT 60.078 57.895 2.18 0.00 0.00 3.91
32 33 0.179468 GAGGCCGGGTGTAATGCTTA 59.821 55.000 2.18 0.00 0.00 3.09
33 34 0.621609 AGGCCGGGTGTAATGCTTAA 59.378 50.000 2.18 0.00 0.00 1.85
34 35 1.004979 AGGCCGGGTGTAATGCTTAAA 59.995 47.619 2.18 0.00 0.00 1.52
35 36 1.133598 GGCCGGGTGTAATGCTTAAAC 59.866 52.381 2.18 0.00 0.00 2.01
36 37 1.133598 GCCGGGTGTAATGCTTAAACC 59.866 52.381 2.18 6.69 41.91 3.27
37 38 2.718563 CCGGGTGTAATGCTTAAACCT 58.281 47.619 12.33 0.00 42.23 3.50
38 39 3.086282 CCGGGTGTAATGCTTAAACCTT 58.914 45.455 12.33 0.00 42.23 3.50
39 40 3.508402 CCGGGTGTAATGCTTAAACCTTT 59.492 43.478 12.33 0.00 42.23 3.11
40 41 4.021807 CCGGGTGTAATGCTTAAACCTTTT 60.022 41.667 12.33 0.00 42.23 2.27
41 42 5.183522 CCGGGTGTAATGCTTAAACCTTTTA 59.816 40.000 12.33 0.00 42.23 1.52
42 43 6.294620 CCGGGTGTAATGCTTAAACCTTTTAA 60.295 38.462 12.33 0.00 42.23 1.52
43 44 6.804783 CGGGTGTAATGCTTAAACCTTTTAAG 59.195 38.462 12.23 12.23 42.23 1.85
44 45 7.522562 CGGGTGTAATGCTTAAACCTTTTAAGT 60.523 37.037 16.14 3.85 42.23 2.24
45 46 8.795513 GGGTGTAATGCTTAAACCTTTTAAGTA 58.204 33.333 16.14 13.37 42.23 2.24
53 54 9.615295 TGCTTAAACCTTTTAAGTAATAAAGCG 57.385 29.630 16.14 0.00 35.03 4.68
54 55 8.581263 GCTTAAACCTTTTAAGTAATAAAGCGC 58.419 33.333 16.14 0.00 35.03 5.92
55 56 8.969121 TTAAACCTTTTAAGTAATAAAGCGCC 57.031 30.769 2.29 0.00 35.03 6.53
56 57 5.571784 ACCTTTTAAGTAATAAAGCGCCC 57.428 39.130 2.29 0.00 35.03 6.13
57 58 4.400251 ACCTTTTAAGTAATAAAGCGCCCC 59.600 41.667 2.29 0.00 35.03 5.80
58 59 4.643334 CCTTTTAAGTAATAAAGCGCCCCT 59.357 41.667 2.29 0.00 35.03 4.79
59 60 5.126545 CCTTTTAAGTAATAAAGCGCCCCTT 59.873 40.000 2.29 0.00 35.03 3.95
60 61 6.350696 CCTTTTAAGTAATAAAGCGCCCCTTT 60.351 38.462 2.29 0.06 45.44 3.11
61 62 6.593268 TTTAAGTAATAAAGCGCCCCTTTT 57.407 33.333 2.29 0.00 40.85 2.27
62 63 4.713824 AAGTAATAAAGCGCCCCTTTTC 57.286 40.909 2.29 0.00 40.85 2.29
63 64 2.681344 AGTAATAAAGCGCCCCTTTTCG 59.319 45.455 2.29 0.00 40.85 3.46
64 65 1.828979 AATAAAGCGCCCCTTTTCGA 58.171 45.000 2.29 0.00 40.85 3.71
65 66 1.828979 ATAAAGCGCCCCTTTTCGAA 58.171 45.000 2.29 0.00 40.85 3.71
66 67 1.606903 TAAAGCGCCCCTTTTCGAAA 58.393 45.000 6.47 6.47 40.85 3.46
67 68 0.747852 AAAGCGCCCCTTTTCGAAAA 59.252 45.000 21.35 21.35 40.85 2.29
68 69 0.031585 AAGCGCCCCTTTTCGAAAAC 59.968 50.000 19.08 8.82 0.00 2.43
69 70 1.104577 AGCGCCCCTTTTCGAAAACA 61.105 50.000 19.08 0.38 0.00 2.83
70 71 0.038618 GCGCCCCTTTTCGAAAACAT 60.039 50.000 19.08 0.00 0.00 2.71
71 72 1.977188 CGCCCCTTTTCGAAAACATC 58.023 50.000 19.08 7.99 0.00 3.06
72 73 1.402325 CGCCCCTTTTCGAAAACATCC 60.402 52.381 19.08 7.66 0.00 3.51
73 74 1.616374 GCCCCTTTTCGAAAACATCCA 59.384 47.619 19.08 0.00 0.00 3.41
74 75 2.233676 GCCCCTTTTCGAAAACATCCAT 59.766 45.455 19.08 0.00 0.00 3.41
75 76 3.848726 CCCCTTTTCGAAAACATCCATG 58.151 45.455 19.08 7.87 0.00 3.66
76 77 3.253230 CCCTTTTCGAAAACATCCATGC 58.747 45.455 19.08 0.00 0.00 4.06
77 78 3.305950 CCCTTTTCGAAAACATCCATGCA 60.306 43.478 19.08 0.00 0.00 3.96
78 79 4.497300 CCTTTTCGAAAACATCCATGCAT 58.503 39.130 19.08 0.00 0.00 3.96
79 80 4.327898 CCTTTTCGAAAACATCCATGCATG 59.672 41.667 20.19 20.19 0.00 4.06
88 89 4.159266 CCATGCATGGCTCCAGAG 57.841 61.111 31.95 6.86 41.75 3.35
89 90 1.226542 CCATGCATGGCTCCAGAGT 59.773 57.895 31.95 0.00 41.75 3.24
90 91 0.395311 CCATGCATGGCTCCAGAGTT 60.395 55.000 31.95 0.00 41.75 3.01
91 92 0.738975 CATGCATGGCTCCAGAGTTG 59.261 55.000 19.40 0.00 0.00 3.16
92 93 0.395311 ATGCATGGCTCCAGAGTTGG 60.395 55.000 0.00 0.00 46.49 3.77
93 94 2.413142 GCATGGCTCCAGAGTTGGC 61.413 63.158 0.00 0.00 44.63 4.52
94 95 2.110967 CATGGCTCCAGAGTTGGCG 61.111 63.158 0.00 0.00 44.63 5.69
95 96 2.293318 ATGGCTCCAGAGTTGGCGA 61.293 57.895 0.00 0.00 44.63 5.54
96 97 2.125350 GGCTCCAGAGTTGGCGAG 60.125 66.667 0.00 0.00 44.63 5.03
97 98 2.650116 GGCTCCAGAGTTGGCGAGA 61.650 63.158 0.00 0.00 44.63 4.04
98 99 1.293498 GCTCCAGAGTTGGCGAGAA 59.707 57.895 0.00 0.00 44.63 2.87
99 100 0.320771 GCTCCAGAGTTGGCGAGAAA 60.321 55.000 0.00 0.00 44.63 2.52
100 101 1.433534 CTCCAGAGTTGGCGAGAAAC 58.566 55.000 0.00 0.00 44.63 2.78
101 102 0.756294 TCCAGAGTTGGCGAGAAACA 59.244 50.000 0.00 0.00 44.63 2.83
102 103 0.868406 CCAGAGTTGGCGAGAAACAC 59.132 55.000 0.00 0.00 37.73 3.32
103 104 1.581934 CAGAGTTGGCGAGAAACACA 58.418 50.000 0.00 0.00 0.00 3.72
104 105 1.528586 CAGAGTTGGCGAGAAACACAG 59.471 52.381 0.00 0.00 0.00 3.66
105 106 0.868406 GAGTTGGCGAGAAACACAGG 59.132 55.000 0.00 0.00 0.00 4.00
106 107 0.468226 AGTTGGCGAGAAACACAGGA 59.532 50.000 0.00 0.00 0.00 3.86
107 108 1.134220 AGTTGGCGAGAAACACAGGAA 60.134 47.619 0.00 0.00 0.00 3.36
108 109 1.673920 GTTGGCGAGAAACACAGGAAA 59.326 47.619 0.00 0.00 0.00 3.13
109 110 1.305201 TGGCGAGAAACACAGGAAAC 58.695 50.000 0.00 0.00 0.00 2.78
110 111 1.305201 GGCGAGAAACACAGGAAACA 58.695 50.000 0.00 0.00 0.00 2.83
111 112 1.673920 GGCGAGAAACACAGGAAACAA 59.326 47.619 0.00 0.00 0.00 2.83
112 113 2.540973 GGCGAGAAACACAGGAAACAAC 60.541 50.000 0.00 0.00 0.00 3.32
113 114 2.849502 GCGAGAAACACAGGAAACAACG 60.850 50.000 0.00 0.00 0.00 4.10
114 115 2.605818 CGAGAAACACAGGAAACAACGA 59.394 45.455 0.00 0.00 0.00 3.85
115 116 3.062909 CGAGAAACACAGGAAACAACGAA 59.937 43.478 0.00 0.00 0.00 3.85
116 117 4.588278 GAGAAACACAGGAAACAACGAAG 58.412 43.478 0.00 0.00 0.00 3.79
117 118 3.377172 AGAAACACAGGAAACAACGAAGG 59.623 43.478 0.00 0.00 0.00 3.46
118 119 1.021968 ACACAGGAAACAACGAAGGC 58.978 50.000 0.00 0.00 0.00 4.35
119 120 0.041312 CACAGGAAACAACGAAGGCG 60.041 55.000 0.00 0.00 44.79 5.52
120 121 0.179067 ACAGGAAACAACGAAGGCGA 60.179 50.000 0.00 0.00 41.64 5.54
121 122 0.512952 CAGGAAACAACGAAGGCGAG 59.487 55.000 0.00 0.00 41.64 5.03
122 123 0.602905 AGGAAACAACGAAGGCGAGG 60.603 55.000 0.00 0.00 41.64 4.63
123 124 1.574702 GGAAACAACGAAGGCGAGGG 61.575 60.000 0.00 0.00 41.64 4.30
124 125 1.574702 GAAACAACGAAGGCGAGGGG 61.575 60.000 0.00 0.00 41.64 4.79
125 126 4.699522 ACAACGAAGGCGAGGGGC 62.700 66.667 0.00 0.00 41.64 5.80
142 143 4.760047 CGGAGACCGGTGGCAAGG 62.760 72.222 14.63 8.52 44.15 3.61
143 144 4.410400 GGAGACCGGTGGCAAGGG 62.410 72.222 14.63 9.07 0.00 3.95
215 216 3.187313 TCCCACGAGGAAGGAGGA 58.813 61.111 0.00 0.00 43.78 3.71
216 217 1.305046 TCCCACGAGGAAGGAGGAC 60.305 63.158 0.00 0.00 43.78 3.85
217 218 2.359967 CCCACGAGGAAGGAGGACC 61.360 68.421 0.00 0.00 38.24 4.46
218 219 2.711922 CCACGAGGAAGGAGGACCG 61.712 68.421 0.00 0.00 38.08 4.79
219 220 1.677966 CACGAGGAAGGAGGACCGA 60.678 63.158 0.00 0.00 41.83 4.69
220 221 1.378778 ACGAGGAAGGAGGACCGAG 60.379 63.158 0.00 0.00 41.83 4.63
221 222 1.077644 CGAGGAAGGAGGACCGAGA 60.078 63.158 0.00 0.00 41.83 4.04
222 223 0.466555 CGAGGAAGGAGGACCGAGAT 60.467 60.000 0.00 0.00 41.83 2.75
223 224 1.324383 GAGGAAGGAGGACCGAGATC 58.676 60.000 0.00 0.00 41.83 2.75
224 225 0.631753 AGGAAGGAGGACCGAGATCA 59.368 55.000 0.00 0.00 41.83 2.92
225 226 1.007238 AGGAAGGAGGACCGAGATCAA 59.993 52.381 0.00 0.00 41.83 2.57
226 227 1.831736 GGAAGGAGGACCGAGATCAAA 59.168 52.381 0.00 0.00 41.83 2.69
227 228 2.236395 GGAAGGAGGACCGAGATCAAAA 59.764 50.000 0.00 0.00 41.83 2.44
228 229 3.526534 GAAGGAGGACCGAGATCAAAAG 58.473 50.000 0.00 0.00 41.83 2.27
229 230 2.541466 AGGAGGACCGAGATCAAAAGT 58.459 47.619 0.00 0.00 41.83 2.66
230 231 2.234908 AGGAGGACCGAGATCAAAAGTG 59.765 50.000 0.00 0.00 41.83 3.16
231 232 2.622436 GAGGACCGAGATCAAAAGTGG 58.378 52.381 0.00 0.00 0.00 4.00
232 233 2.233922 GAGGACCGAGATCAAAAGTGGA 59.766 50.000 0.00 0.00 0.00 4.02
233 234 2.234908 AGGACCGAGATCAAAAGTGGAG 59.765 50.000 0.00 0.00 0.00 3.86
234 235 2.003301 GACCGAGATCAAAAGTGGAGC 58.997 52.381 0.00 0.00 0.00 4.70
235 236 1.002366 CCGAGATCAAAAGTGGAGCG 58.998 55.000 0.00 0.00 0.00 5.03
236 237 0.371645 CGAGATCAAAAGTGGAGCGC 59.628 55.000 0.00 0.00 0.00 5.92
237 238 0.371645 GAGATCAAAAGTGGAGCGCG 59.628 55.000 0.00 0.00 0.00 6.86
238 239 0.037326 AGATCAAAAGTGGAGCGCGA 60.037 50.000 12.10 0.00 0.00 5.87
239 240 1.009829 GATCAAAAGTGGAGCGCGAT 58.990 50.000 12.10 1.23 0.00 4.58
240 241 0.729116 ATCAAAAGTGGAGCGCGATG 59.271 50.000 12.10 0.00 0.00 3.84
241 242 1.512734 CAAAAGTGGAGCGCGATGC 60.513 57.895 12.10 10.74 46.98 3.91
266 267 2.559698 TTTTCCTGTTGCGAGATCCA 57.440 45.000 0.00 0.00 0.00 3.41
267 268 2.099141 TTTCCTGTTGCGAGATCCAG 57.901 50.000 0.00 0.00 0.00 3.86
268 269 1.266178 TTCCTGTTGCGAGATCCAGA 58.734 50.000 0.00 0.00 0.00 3.86
269 270 1.489481 TCCTGTTGCGAGATCCAGAT 58.511 50.000 0.00 0.00 0.00 2.90
270 271 1.410517 TCCTGTTGCGAGATCCAGATC 59.589 52.381 0.00 0.00 38.09 2.75
271 272 1.485397 CTGTTGCGAGATCCAGATCG 58.515 55.000 2.08 0.00 42.48 3.69
272 273 1.066152 CTGTTGCGAGATCCAGATCGA 59.934 52.381 6.30 0.00 42.48 3.59
273 274 1.476488 TGTTGCGAGATCCAGATCGAA 59.524 47.619 6.30 0.00 42.48 3.71
274 275 1.855360 GTTGCGAGATCCAGATCGAAC 59.145 52.381 6.30 4.65 42.48 3.95
275 276 0.029433 TGCGAGATCCAGATCGAACG 59.971 55.000 6.30 15.10 42.48 3.95
276 277 0.661780 GCGAGATCCAGATCGAACGG 60.662 60.000 18.38 0.00 42.48 4.44
277 278 0.039978 CGAGATCCAGATCGAACGGG 60.040 60.000 5.49 5.49 42.48 5.28
278 279 1.033574 GAGATCCAGATCGAACGGGT 58.966 55.000 11.38 0.70 42.48 5.28
279 280 1.001158 GAGATCCAGATCGAACGGGTC 60.001 57.143 11.38 9.60 42.48 4.46
280 281 0.744874 GATCCAGATCGAACGGGTCA 59.255 55.000 11.38 0.00 0.00 4.02
281 282 0.460311 ATCCAGATCGAACGGGTCAC 59.540 55.000 11.38 0.00 0.00 3.67
282 283 0.896479 TCCAGATCGAACGGGTCACA 60.896 55.000 11.38 0.00 0.00 3.58
283 284 0.175760 CCAGATCGAACGGGTCACAT 59.824 55.000 3.66 0.00 0.00 3.21
284 285 1.407618 CCAGATCGAACGGGTCACATA 59.592 52.381 3.66 0.00 0.00 2.29
285 286 2.035961 CCAGATCGAACGGGTCACATAT 59.964 50.000 3.66 0.00 0.00 1.78
286 287 3.052745 CAGATCGAACGGGTCACATATG 58.947 50.000 0.00 0.00 0.00 1.78
287 288 2.693591 AGATCGAACGGGTCACATATGT 59.306 45.455 1.41 1.41 0.00 2.29
288 289 3.132289 AGATCGAACGGGTCACATATGTT 59.868 43.478 5.37 0.00 0.00 2.71
289 290 2.612604 TCGAACGGGTCACATATGTTG 58.387 47.619 5.37 2.36 0.00 3.33
290 291 2.231721 TCGAACGGGTCACATATGTTGA 59.768 45.455 5.37 4.83 0.00 3.18
291 292 2.997303 CGAACGGGTCACATATGTTGAA 59.003 45.455 5.37 0.00 0.00 2.69
292 293 3.621268 CGAACGGGTCACATATGTTGAAT 59.379 43.478 5.37 0.00 0.00 2.57
293 294 4.260212 CGAACGGGTCACATATGTTGAATC 60.260 45.833 5.37 4.11 0.00 2.52
294 295 3.194861 ACGGGTCACATATGTTGAATCG 58.805 45.455 5.37 14.62 0.00 3.34
295 296 2.543848 CGGGTCACATATGTTGAATCGG 59.456 50.000 5.37 4.92 0.00 4.18
296 297 3.739830 CGGGTCACATATGTTGAATCGGA 60.740 47.826 5.37 0.00 0.00 4.55
297 298 3.560068 GGGTCACATATGTTGAATCGGAC 59.440 47.826 5.37 8.50 0.00 4.79
298 299 3.245284 GGTCACATATGTTGAATCGGACG 59.755 47.826 5.37 0.00 0.00 4.79
299 300 2.863740 TCACATATGTTGAATCGGACGC 59.136 45.455 5.37 0.00 0.00 5.19
300 301 2.866156 CACATATGTTGAATCGGACGCT 59.134 45.455 5.37 0.00 0.00 5.07
301 302 3.060272 CACATATGTTGAATCGGACGCTC 60.060 47.826 5.37 0.00 0.00 5.03
302 303 1.835121 TATGTTGAATCGGACGCTCG 58.165 50.000 0.00 0.00 0.00 5.03
303 304 1.421410 ATGTTGAATCGGACGCTCGC 61.421 55.000 0.00 0.00 0.00 5.03
304 305 2.878991 TTGAATCGGACGCTCGCG 60.879 61.111 10.06 10.06 46.03 5.87
315 316 3.073446 GCTCGCGCGATAATAGGC 58.927 61.111 34.86 27.05 0.00 3.93
316 317 2.445438 GCTCGCGCGATAATAGGCC 61.445 63.158 34.86 12.38 0.00 5.19
317 318 2.126618 TCGCGCGATAATAGGCCG 60.127 61.111 31.40 0.00 0.00 6.13
318 319 2.126618 CGCGCGATAATAGGCCGA 60.127 61.111 28.94 0.00 0.00 5.54
319 320 1.731613 CGCGCGATAATAGGCCGAA 60.732 57.895 28.94 0.00 0.00 4.30
320 321 1.779683 GCGCGATAATAGGCCGAAC 59.220 57.895 12.10 0.00 0.00 3.95
321 322 1.941476 GCGCGATAATAGGCCGAACG 61.941 60.000 12.10 0.04 0.00 3.95
322 323 1.342082 CGCGATAATAGGCCGAACGG 61.342 60.000 0.00 9.00 38.57 4.44
323 324 1.012486 GCGATAATAGGCCGAACGGG 61.012 60.000 15.01 0.00 39.58 5.28
324 325 0.316204 CGATAATAGGCCGAACGGGT 59.684 55.000 15.01 0.00 38.44 5.28
325 326 1.668047 CGATAATAGGCCGAACGGGTC 60.668 57.143 15.01 0.00 42.41 4.46
326 327 1.342174 GATAATAGGCCGAACGGGTCA 59.658 52.381 15.01 0.00 45.54 4.02
327 328 1.193323 TAATAGGCCGAACGGGTCAA 58.807 50.000 15.01 0.00 45.54 3.18
328 329 0.325602 AATAGGCCGAACGGGTCAAA 59.674 50.000 15.01 0.00 45.54 2.69
329 330 0.544697 ATAGGCCGAACGGGTCAAAT 59.455 50.000 15.01 0.00 45.54 2.32
330 331 1.193323 TAGGCCGAACGGGTCAAATA 58.807 50.000 15.01 0.00 45.54 1.40
331 332 0.107848 AGGCCGAACGGGTCAAATAG 60.108 55.000 15.01 0.00 45.54 1.73
332 333 0.392060 GGCCGAACGGGTCAAATAGT 60.392 55.000 15.01 0.00 41.38 2.12
333 334 1.134729 GGCCGAACGGGTCAAATAGTA 60.135 52.381 15.01 0.00 41.38 1.82
334 335 1.929169 GCCGAACGGGTCAAATAGTAC 59.071 52.381 15.01 0.00 38.44 2.73
335 336 2.417787 GCCGAACGGGTCAAATAGTACT 60.418 50.000 15.01 0.00 38.44 2.73
336 337 3.442100 CCGAACGGGTCAAATAGTACTC 58.558 50.000 0.00 0.00 0.00 2.59
337 338 3.442100 CGAACGGGTCAAATAGTACTCC 58.558 50.000 0.00 0.00 0.00 3.85
338 339 3.736126 CGAACGGGTCAAATAGTACTCCC 60.736 52.174 0.00 1.22 0.00 4.30
339 340 3.111741 ACGGGTCAAATAGTACTCCCT 57.888 47.619 12.04 0.00 33.41 4.20
340 341 3.029570 ACGGGTCAAATAGTACTCCCTC 58.970 50.000 12.04 0.00 33.41 4.30
341 342 2.364647 CGGGTCAAATAGTACTCCCTCC 59.635 54.545 12.04 4.08 33.41 4.30
342 343 2.364647 GGGTCAAATAGTACTCCCTCCG 59.635 54.545 0.00 0.00 32.89 4.63
343 344 2.223994 GGTCAAATAGTACTCCCTCCGC 60.224 54.545 0.00 0.00 0.00 5.54
344 345 2.694109 GTCAAATAGTACTCCCTCCGCT 59.306 50.000 0.00 0.00 0.00 5.52
345 346 2.957006 TCAAATAGTACTCCCTCCGCTC 59.043 50.000 0.00 0.00 0.00 5.03
346 347 1.998222 AATAGTACTCCCTCCGCTCC 58.002 55.000 0.00 0.00 0.00 4.70
347 348 0.851469 ATAGTACTCCCTCCGCTCCA 59.149 55.000 0.00 0.00 0.00 3.86
348 349 0.851469 TAGTACTCCCTCCGCTCCAT 59.149 55.000 0.00 0.00 0.00 3.41
349 350 0.851469 AGTACTCCCTCCGCTCCATA 59.149 55.000 0.00 0.00 0.00 2.74
350 351 1.217183 AGTACTCCCTCCGCTCCATAA 59.783 52.381 0.00 0.00 0.00 1.90
351 352 2.158295 AGTACTCCCTCCGCTCCATAAT 60.158 50.000 0.00 0.00 0.00 1.28
352 353 1.051812 ACTCCCTCCGCTCCATAATG 58.948 55.000 0.00 0.00 0.00 1.90
353 354 1.051812 CTCCCTCCGCTCCATAATGT 58.948 55.000 0.00 0.00 0.00 2.71
354 355 2.248248 CTCCCTCCGCTCCATAATGTA 58.752 52.381 0.00 0.00 0.00 2.29
355 356 2.232452 CTCCCTCCGCTCCATAATGTAG 59.768 54.545 0.00 0.00 0.00 2.74
356 357 1.971357 CCCTCCGCTCCATAATGTAGT 59.029 52.381 0.00 0.00 0.00 2.73
357 358 2.289072 CCCTCCGCTCCATAATGTAGTG 60.289 54.545 0.00 0.00 0.00 2.74
358 359 2.408050 CTCCGCTCCATAATGTAGTGC 58.592 52.381 0.00 0.00 0.00 4.40
359 360 1.070134 TCCGCTCCATAATGTAGTGCC 59.930 52.381 0.00 0.00 0.00 5.01
360 361 1.070758 CCGCTCCATAATGTAGTGCCT 59.929 52.381 0.00 0.00 0.00 4.75
361 362 2.299013 CCGCTCCATAATGTAGTGCCTA 59.701 50.000 0.00 0.00 0.00 3.93
362 363 3.055819 CCGCTCCATAATGTAGTGCCTAT 60.056 47.826 0.00 0.00 0.00 2.57
363 364 4.159693 CCGCTCCATAATGTAGTGCCTATA 59.840 45.833 0.00 0.00 0.00 1.31
364 365 5.344066 CGCTCCATAATGTAGTGCCTATAG 58.656 45.833 0.00 0.00 0.00 1.31
365 366 5.125578 CGCTCCATAATGTAGTGCCTATAGA 59.874 44.000 0.00 0.00 0.00 1.98
366 367 6.183360 CGCTCCATAATGTAGTGCCTATAGAT 60.183 42.308 0.00 0.00 0.00 1.98
367 368 7.560368 GCTCCATAATGTAGTGCCTATAGATT 58.440 38.462 0.00 0.00 0.00 2.40
368 369 8.043710 GCTCCATAATGTAGTGCCTATAGATTT 58.956 37.037 0.00 0.00 0.00 2.17
369 370 9.950496 CTCCATAATGTAGTGCCTATAGATTTT 57.050 33.333 0.00 0.00 0.00 1.82
372 373 9.831737 CATAATGTAGTGCCTATAGATTTTTGC 57.168 33.333 0.00 0.00 0.00 3.68
373 374 7.880160 AATGTAGTGCCTATAGATTTTTGCA 57.120 32.000 0.00 0.00 0.00 4.08
374 375 7.880160 ATGTAGTGCCTATAGATTTTTGCAA 57.120 32.000 0.00 0.00 0.00 4.08
375 376 7.695480 TGTAGTGCCTATAGATTTTTGCAAA 57.305 32.000 8.05 8.05 0.00 3.68
376 377 8.116651 TGTAGTGCCTATAGATTTTTGCAAAA 57.883 30.769 20.46 20.46 0.00 2.44
377 378 8.243426 TGTAGTGCCTATAGATTTTTGCAAAAG 58.757 33.333 22.78 10.71 0.00 2.27
378 379 7.232118 AGTGCCTATAGATTTTTGCAAAAGT 57.768 32.000 22.78 20.72 0.00 2.66
379 380 7.315890 AGTGCCTATAGATTTTTGCAAAAGTC 58.684 34.615 29.81 29.81 35.58 3.01
380 381 7.039784 AGTGCCTATAGATTTTTGCAAAAGTCA 60.040 33.333 34.74 25.12 37.17 3.41
381 382 7.598493 GTGCCTATAGATTTTTGCAAAAGTCAA 59.402 33.333 34.74 23.52 37.17 3.18
382 383 8.147058 TGCCTATAGATTTTTGCAAAAGTCAAA 58.853 29.630 34.74 26.42 37.17 2.69
383 384 8.435430 GCCTATAGATTTTTGCAAAAGTCAAAC 58.565 33.333 34.74 20.44 37.17 2.93
384 385 9.474920 CCTATAGATTTTTGCAAAAGTCAAACA 57.525 29.630 34.74 22.58 37.17 2.83
386 387 8.715191 ATAGATTTTTGCAAAAGTCAAACACA 57.285 26.923 34.74 19.54 37.17 3.72
387 388 7.432350 AGATTTTTGCAAAAGTCAAACACAA 57.568 28.000 34.74 16.15 37.17 3.33
388 389 7.869800 AGATTTTTGCAAAAGTCAAACACAAA 58.130 26.923 34.74 15.72 37.17 2.83
389 390 7.802720 AGATTTTTGCAAAAGTCAAACACAAAC 59.197 29.630 34.74 15.19 37.17 2.93
390 391 6.610741 TTTTGCAAAAGTCAAACACAAACT 57.389 29.167 20.46 0.00 33.66 2.66
391 392 6.610741 TTTGCAAAAGTCAAACACAAACTT 57.389 29.167 10.02 0.00 34.81 2.66
392 393 5.588568 TGCAAAAGTCAAACACAAACTTG 57.411 34.783 0.00 0.00 33.68 3.16
393 394 5.292765 TGCAAAAGTCAAACACAAACTTGA 58.707 33.333 0.00 0.00 33.68 3.02
394 395 5.931146 TGCAAAAGTCAAACACAAACTTGAT 59.069 32.000 0.00 0.00 34.26 2.57
395 396 6.090628 TGCAAAAGTCAAACACAAACTTGATC 59.909 34.615 0.00 0.00 34.26 2.92
396 397 6.090628 GCAAAAGTCAAACACAAACTTGATCA 59.909 34.615 0.00 0.00 34.26 2.92
397 398 7.201548 GCAAAAGTCAAACACAAACTTGATCAT 60.202 33.333 0.00 0.00 34.26 2.45
398 399 9.299963 CAAAAGTCAAACACAAACTTGATCATA 57.700 29.630 0.00 0.00 34.26 2.15
487 488 6.916360 ATTTTCAGAATGTACATGGTTGGT 57.084 33.333 9.63 0.00 37.40 3.67
488 489 9.693739 ATATTTTCAGAATGTACATGGTTGGTA 57.306 29.630 9.63 0.00 37.40 3.25
489 490 8.593945 ATTTTCAGAATGTACATGGTTGGTAT 57.406 30.769 9.63 0.00 37.40 2.73
490 491 8.415950 TTTTCAGAATGTACATGGTTGGTATT 57.584 30.769 9.63 0.00 37.40 1.89
491 492 7.389803 TTCAGAATGTACATGGTTGGTATTG 57.610 36.000 9.63 0.00 37.40 1.90
492 493 6.480763 TCAGAATGTACATGGTTGGTATTGT 58.519 36.000 9.63 0.00 37.40 2.71
493 494 7.625469 TCAGAATGTACATGGTTGGTATTGTA 58.375 34.615 9.63 0.00 37.40 2.41
494 495 7.768582 TCAGAATGTACATGGTTGGTATTGTAG 59.231 37.037 9.63 0.00 37.40 2.74
495 496 7.768582 CAGAATGTACATGGTTGGTATTGTAGA 59.231 37.037 9.63 0.00 0.00 2.59
496 497 8.494433 AGAATGTACATGGTTGGTATTGTAGAT 58.506 33.333 9.63 0.00 31.99 1.98
497 498 8.450578 AATGTACATGGTTGGTATTGTAGATG 57.549 34.615 9.63 0.00 31.34 2.90
498 499 6.953101 TGTACATGGTTGGTATTGTAGATGT 58.047 36.000 0.00 0.00 0.00 3.06
499 500 8.080363 TGTACATGGTTGGTATTGTAGATGTA 57.920 34.615 0.00 0.00 0.00 2.29
500 501 8.201464 TGTACATGGTTGGTATTGTAGATGTAG 58.799 37.037 0.00 0.00 0.00 2.74
501 502 7.432148 ACATGGTTGGTATTGTAGATGTAGA 57.568 36.000 0.00 0.00 0.00 2.59
502 503 7.272978 ACATGGTTGGTATTGTAGATGTAGAC 58.727 38.462 0.00 0.00 0.00 2.59
503 504 6.860790 TGGTTGGTATTGTAGATGTAGACA 57.139 37.500 0.00 0.00 0.00 3.41
504 505 6.873997 TGGTTGGTATTGTAGATGTAGACAG 58.126 40.000 0.00 0.00 0.00 3.51
505 506 6.439375 TGGTTGGTATTGTAGATGTAGACAGT 59.561 38.462 0.00 0.00 0.00 3.55
506 507 7.038587 TGGTTGGTATTGTAGATGTAGACAGTT 60.039 37.037 0.00 0.00 0.00 3.16
507 508 7.822822 GGTTGGTATTGTAGATGTAGACAGTTT 59.177 37.037 0.00 0.00 0.00 2.66
508 509 9.216117 GTTGGTATTGTAGATGTAGACAGTTTT 57.784 33.333 0.00 0.00 0.00 2.43
509 510 8.997621 TGGTATTGTAGATGTAGACAGTTTTC 57.002 34.615 0.00 0.00 0.00 2.29
510 511 8.812972 TGGTATTGTAGATGTAGACAGTTTTCT 58.187 33.333 0.00 0.00 0.00 2.52
511 512 9.303537 GGTATTGTAGATGTAGACAGTTTTCTC 57.696 37.037 0.00 0.00 0.00 2.87
582 583 5.028549 AGGCACTACATTGTGGAATAGAG 57.971 43.478 7.20 0.00 36.02 2.43
583 584 4.130118 GGCACTACATTGTGGAATAGAGG 58.870 47.826 7.20 0.00 38.31 3.69
584 585 4.130118 GCACTACATTGTGGAATAGAGGG 58.870 47.826 7.20 0.00 38.31 4.30
585 586 4.141711 GCACTACATTGTGGAATAGAGGGA 60.142 45.833 7.20 0.00 38.31 4.20
586 587 5.605534 CACTACATTGTGGAATAGAGGGAG 58.394 45.833 7.20 0.00 34.56 4.30
587 588 5.129485 CACTACATTGTGGAATAGAGGGAGT 59.871 44.000 7.20 0.00 34.56 3.85
588 589 4.494091 ACATTGTGGAATAGAGGGAGTG 57.506 45.455 0.00 0.00 0.00 3.51
605 606 7.679025 AGAGGGAGTGTTAGTTAAATCCTAACT 59.321 37.037 12.89 2.95 42.96 2.24
629 630 6.226787 TCTTCTCACATTCTCTTCCTTTCAC 58.773 40.000 0.00 0.00 0.00 3.18
633 634 3.809832 CACATTCTCTTCCTTTCACGTGT 59.190 43.478 16.51 0.00 0.00 4.49
662 663 6.072838 TGTGAAGCAACAAATTCAGAGAGATC 60.073 38.462 0.00 0.00 36.16 2.75
700 701 9.550406 TTAACGGTATATATTTTCTGAGGGTTG 57.450 33.333 0.00 0.00 0.00 3.77
763 769 1.830847 ACACGCCCCCTCAAAAACC 60.831 57.895 0.00 0.00 0.00 3.27
815 821 2.038820 CCAACCAAACCAAAGCATCCAT 59.961 45.455 0.00 0.00 0.00 3.41
925 932 3.402110 CATCTCACCACACAAGCAGTAA 58.598 45.455 0.00 0.00 0.00 2.24
935 942 3.504134 ACACAAGCAGTAAACACACACAA 59.496 39.130 0.00 0.00 0.00 3.33
936 943 4.097714 CACAAGCAGTAAACACACACAAG 58.902 43.478 0.00 0.00 0.00 3.16
937 944 3.128589 ACAAGCAGTAAACACACACAAGG 59.871 43.478 0.00 0.00 0.00 3.61
938 945 2.999331 AGCAGTAAACACACACAAGGT 58.001 42.857 0.00 0.00 0.00 3.50
1529 1543 4.104633 CGACGTCGCAGCGTTCAC 62.105 66.667 26.59 4.74 45.79 3.18
1551 1568 0.527565 GGTTTGTGCTGGTGCCTATG 59.472 55.000 0.00 0.00 38.71 2.23
1556 1573 0.810031 GTGCTGGTGCCTATGGTACG 60.810 60.000 0.00 0.00 39.20 3.67
1561 1578 1.087771 GGTGCCTATGGTACGTGTGC 61.088 60.000 0.00 0.00 39.20 4.57
1607 1630 3.282920 TGCACGCATTGGCACGAA 61.283 55.556 2.83 0.00 41.24 3.85
1608 1631 2.800746 GCACGCATTGGCACGAAC 60.801 61.111 2.83 0.00 41.24 3.95
1610 1633 1.440850 CACGCATTGGCACGAACAG 60.441 57.895 2.83 0.00 41.24 3.16
1614 1637 0.447801 GCATTGGCACGAACAGGTAG 59.552 55.000 0.00 0.00 40.72 3.18
1636 1661 4.050934 TGCGTCTCGTGCGTGGAT 62.051 61.111 3.95 0.00 34.24 3.41
1637 1662 3.545481 GCGTCTCGTGCGTGGATG 61.545 66.667 3.95 0.00 0.00 3.51
1638 1663 2.126463 CGTCTCGTGCGTGGATGT 60.126 61.111 0.00 0.00 0.00 3.06
1640 1665 1.282248 CGTCTCGTGCGTGGATGTTT 61.282 55.000 0.00 0.00 0.00 2.83
1641 1666 0.163788 GTCTCGTGCGTGGATGTTTG 59.836 55.000 0.00 0.00 0.00 2.93
1642 1667 0.249699 TCTCGTGCGTGGATGTTTGT 60.250 50.000 0.00 0.00 0.00 2.83
1643 1668 1.000052 TCTCGTGCGTGGATGTTTGTA 60.000 47.619 0.00 0.00 0.00 2.41
1644 1669 1.999735 CTCGTGCGTGGATGTTTGTAT 59.000 47.619 0.00 0.00 0.00 2.29
1645 1670 1.996898 TCGTGCGTGGATGTTTGTATC 59.003 47.619 0.00 0.00 0.00 2.24
1847 1884 3.006217 TCTCCCAATCTGTCGCATCATAG 59.994 47.826 0.00 0.00 0.00 2.23
1881 1918 2.482374 GAAGCACTGTGCCATCGC 59.518 61.111 27.74 10.16 46.52 4.58
1901 1939 3.684788 CGCCTTCAACTAGCAAGTTATGT 59.315 43.478 0.00 0.00 44.28 2.29
1989 2027 2.021457 CGGTGTTTCTTCACTTTGGGT 58.979 47.619 0.00 0.00 38.28 4.51
1991 2029 3.288092 GGTGTTTCTTCACTTTGGGTCT 58.712 45.455 0.00 0.00 38.28 3.85
2064 2134 5.914635 CACATTTAAATCTCGTGCAACTTGT 59.085 36.000 0.00 0.00 31.75 3.16
2084 2154 3.187022 TGTGATTGACATCGTTTCTGCAG 59.813 43.478 7.63 7.63 31.08 4.41
2120 2190 4.201970 TGGTCATTGTTTTGAACCGTTCTC 60.202 41.667 12.43 2.15 32.08 2.87
2202 2272 6.769822 TCTTTTCTTTTCTCTGTCAGCTGATT 59.230 34.615 21.47 0.00 0.00 2.57
2205 2275 7.840342 TTCTTTTCTCTGTCAGCTGATTATC 57.160 36.000 21.47 7.44 0.00 1.75
2226 2296 0.604780 CCTGAATATGCTGGCCCTCG 60.605 60.000 0.00 0.00 0.00 4.63
2248 2318 2.216898 GCCTGCTTCAAGCTATACCAG 58.783 52.381 11.57 0.00 42.97 4.00
2252 2322 4.063689 CTGCTTCAAGCTATACCAGATGG 58.936 47.826 11.57 0.00 42.97 3.51
2357 2460 7.257419 GGTCATATTAGTTTTATGGGGGATCCT 60.257 40.741 12.58 0.00 36.20 3.24
2394 2497 3.058293 GTCGGATGTGACAAAATCAAGCA 60.058 43.478 0.00 0.00 39.72 3.91
2407 2510 9.196552 GACAAAATCAAGCAGCTAAACTAATTT 57.803 29.630 0.00 0.00 0.00 1.82
2424 2527 9.822185 AAACTAATTTCTCTTCTTTGCAACAAT 57.178 25.926 0.00 0.00 0.00 2.71
2428 2531 8.585189 AATTTCTCTTCTTTGCAACAATTCTC 57.415 30.769 0.00 0.00 0.00 2.87
2431 2534 7.338800 TCTCTTCTTTGCAACAATTCTCTTT 57.661 32.000 0.00 0.00 0.00 2.52
2432 2535 7.198390 TCTCTTCTTTGCAACAATTCTCTTTG 58.802 34.615 0.00 0.00 0.00 2.77
2434 2537 6.974622 TCTTCTTTGCAACAATTCTCTTTGTC 59.025 34.615 0.00 0.00 38.85 3.18
2435 2538 5.273170 TCTTTGCAACAATTCTCTTTGTCG 58.727 37.500 0.00 0.00 38.85 4.35
2440 2544 4.441087 GCAACAATTCTCTTTGTCGGAAAC 59.559 41.667 0.00 0.00 38.85 2.78
2499 2603 6.100404 ACATATGTTGTGTTGCAGGATTTT 57.900 33.333 1.41 0.00 37.11 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.412710 CCGGCCTCTGCATAACTAAGA 59.587 52.381 0.00 0.00 40.13 2.10
1 2 1.541233 CCCGGCCTCTGCATAACTAAG 60.541 57.143 0.00 0.00 40.13 2.18
3 4 0.689745 ACCCGGCCTCTGCATAACTA 60.690 55.000 0.00 0.00 40.13 2.24
4 5 1.995626 ACCCGGCCTCTGCATAACT 60.996 57.895 0.00 0.00 40.13 2.24
5 6 1.819632 CACCCGGCCTCTGCATAAC 60.820 63.158 0.00 0.00 40.13 1.89
6 7 0.978667 TACACCCGGCCTCTGCATAA 60.979 55.000 0.00 0.00 40.13 1.90
7 8 0.978667 TTACACCCGGCCTCTGCATA 60.979 55.000 0.00 0.00 40.13 3.14
8 9 1.635817 ATTACACCCGGCCTCTGCAT 61.636 55.000 0.00 0.00 40.13 3.96
9 10 2.297895 ATTACACCCGGCCTCTGCA 61.298 57.895 0.00 0.00 40.13 4.41
10 11 1.819632 CATTACACCCGGCCTCTGC 60.820 63.158 0.00 0.00 0.00 4.26
11 12 1.819632 GCATTACACCCGGCCTCTG 60.820 63.158 0.00 0.00 0.00 3.35
12 13 1.562672 AAGCATTACACCCGGCCTCT 61.563 55.000 0.00 0.00 0.00 3.69
13 14 0.179468 TAAGCATTACACCCGGCCTC 59.821 55.000 0.00 0.00 0.00 4.70
14 15 0.621609 TTAAGCATTACACCCGGCCT 59.378 50.000 0.00 0.00 0.00 5.19
15 16 1.133598 GTTTAAGCATTACACCCGGCC 59.866 52.381 0.00 0.00 0.00 6.13
16 17 1.133598 GGTTTAAGCATTACACCCGGC 59.866 52.381 0.00 0.00 43.82 6.13
27 28 9.615295 CGCTTTATTACTTAAAAGGTTTAAGCA 57.385 29.630 16.65 5.22 35.88 3.91
28 29 8.581263 GCGCTTTATTACTTAAAAGGTTTAAGC 58.419 33.333 16.65 0.00 35.88 3.09
29 30 9.069078 GGCGCTTTATTACTTAAAAGGTTTAAG 57.931 33.333 7.64 15.59 37.84 1.85
30 31 8.028354 GGGCGCTTTATTACTTAAAAGGTTTAA 58.972 33.333 7.64 0.00 34.07 1.52
31 32 7.362834 GGGGCGCTTTATTACTTAAAAGGTTTA 60.363 37.037 7.64 0.00 34.07 2.01
32 33 6.392354 GGGCGCTTTATTACTTAAAAGGTTT 58.608 36.000 7.64 0.00 34.07 3.27
33 34 5.105635 GGGGCGCTTTATTACTTAAAAGGTT 60.106 40.000 7.64 0.00 34.07 3.50
34 35 4.400251 GGGGCGCTTTATTACTTAAAAGGT 59.600 41.667 7.64 0.00 34.07 3.50
35 36 4.643334 AGGGGCGCTTTATTACTTAAAAGG 59.357 41.667 7.64 0.00 34.07 3.11
36 37 5.830000 AGGGGCGCTTTATTACTTAAAAG 57.170 39.130 7.64 0.00 36.09 2.27
37 38 6.593268 AAAGGGGCGCTTTATTACTTAAAA 57.407 33.333 25.79 0.00 29.52 1.52
38 39 6.593268 AAAAGGGGCGCTTTATTACTTAAA 57.407 33.333 26.94 0.00 0.00 1.52
39 40 5.163733 CGAAAAGGGGCGCTTTATTACTTAA 60.164 40.000 26.94 0.00 0.00 1.85
40 41 4.333372 CGAAAAGGGGCGCTTTATTACTTA 59.667 41.667 26.94 0.00 0.00 2.24
41 42 3.128068 CGAAAAGGGGCGCTTTATTACTT 59.872 43.478 26.94 12.46 0.00 2.24
42 43 2.681344 CGAAAAGGGGCGCTTTATTACT 59.319 45.455 26.94 13.15 0.00 2.24
43 44 2.679336 TCGAAAAGGGGCGCTTTATTAC 59.321 45.455 26.94 17.42 0.00 1.89
44 45 2.988570 TCGAAAAGGGGCGCTTTATTA 58.011 42.857 26.94 13.79 0.00 0.98
45 46 1.828979 TCGAAAAGGGGCGCTTTATT 58.171 45.000 26.94 14.56 0.00 1.40
46 47 1.828979 TTCGAAAAGGGGCGCTTTAT 58.171 45.000 26.94 17.61 0.00 1.40
47 48 1.606903 TTTCGAAAAGGGGCGCTTTA 58.393 45.000 26.94 11.41 0.00 1.85
48 49 0.747852 TTTTCGAAAAGGGGCGCTTT 59.252 45.000 22.23 22.23 0.00 3.51
49 50 0.031585 GTTTTCGAAAAGGGGCGCTT 59.968 50.000 23.08 11.46 0.00 4.68
50 51 1.104577 TGTTTTCGAAAAGGGGCGCT 61.105 50.000 23.08 0.00 0.00 5.92
51 52 0.038618 ATGTTTTCGAAAAGGGGCGC 60.039 50.000 23.08 11.07 0.00 6.53
52 53 1.402325 GGATGTTTTCGAAAAGGGGCG 60.402 52.381 23.08 0.00 0.00 6.13
53 54 1.616374 TGGATGTTTTCGAAAAGGGGC 59.384 47.619 23.08 12.10 0.00 5.80
54 55 3.848726 CATGGATGTTTTCGAAAAGGGG 58.151 45.455 23.08 5.90 0.00 4.79
55 56 3.253230 GCATGGATGTTTTCGAAAAGGG 58.747 45.455 23.08 9.03 0.00 3.95
56 57 3.911868 TGCATGGATGTTTTCGAAAAGG 58.088 40.909 23.08 4.49 0.00 3.11
57 58 5.444586 CATGCATGGATGTTTTCGAAAAG 57.555 39.130 23.08 10.92 0.00 2.27
72 73 0.738975 CAACTCTGGAGCCATGCATG 59.261 55.000 20.19 20.19 0.00 4.06
73 74 0.395311 CCAACTCTGGAGCCATGCAT 60.395 55.000 0.00 0.00 46.92 3.96
74 75 1.001764 CCAACTCTGGAGCCATGCA 60.002 57.895 0.00 0.00 46.92 3.96
75 76 2.413142 GCCAACTCTGGAGCCATGC 61.413 63.158 0.00 0.00 46.92 4.06
76 77 2.110967 CGCCAACTCTGGAGCCATG 61.111 63.158 0.00 0.00 46.92 3.66
77 78 2.249413 CTCGCCAACTCTGGAGCCAT 62.249 60.000 0.00 0.00 46.92 4.40
78 79 2.922503 TCGCCAACTCTGGAGCCA 60.923 61.111 0.00 0.00 46.92 4.75
79 80 2.125350 CTCGCCAACTCTGGAGCC 60.125 66.667 0.00 0.00 46.92 4.70
80 81 0.320771 TTTCTCGCCAACTCTGGAGC 60.321 55.000 0.00 0.00 46.92 4.70
81 82 1.270305 TGTTTCTCGCCAACTCTGGAG 60.270 52.381 0.00 0.00 46.92 3.86
82 83 0.756294 TGTTTCTCGCCAACTCTGGA 59.244 50.000 0.00 0.00 46.92 3.86
83 84 0.868406 GTGTTTCTCGCCAACTCTGG 59.132 55.000 0.00 0.00 46.65 3.86
84 85 1.528586 CTGTGTTTCTCGCCAACTCTG 59.471 52.381 0.00 0.00 0.00 3.35
85 86 1.541233 CCTGTGTTTCTCGCCAACTCT 60.541 52.381 0.00 0.00 0.00 3.24
86 87 0.868406 CCTGTGTTTCTCGCCAACTC 59.132 55.000 0.00 0.00 0.00 3.01
87 88 0.468226 TCCTGTGTTTCTCGCCAACT 59.532 50.000 0.00 0.00 0.00 3.16
88 89 1.305201 TTCCTGTGTTTCTCGCCAAC 58.695 50.000 0.00 0.00 0.00 3.77
89 90 1.673920 GTTTCCTGTGTTTCTCGCCAA 59.326 47.619 0.00 0.00 0.00 4.52
90 91 1.305201 GTTTCCTGTGTTTCTCGCCA 58.695 50.000 0.00 0.00 0.00 5.69
91 92 1.305201 TGTTTCCTGTGTTTCTCGCC 58.695 50.000 0.00 0.00 0.00 5.54
92 93 2.716398 GTTGTTTCCTGTGTTTCTCGC 58.284 47.619 0.00 0.00 0.00 5.03
93 94 2.605818 TCGTTGTTTCCTGTGTTTCTCG 59.394 45.455 0.00 0.00 0.00 4.04
94 95 4.495844 CCTTCGTTGTTTCCTGTGTTTCTC 60.496 45.833 0.00 0.00 0.00 2.87
95 96 3.377172 CCTTCGTTGTTTCCTGTGTTTCT 59.623 43.478 0.00 0.00 0.00 2.52
96 97 3.691498 CCTTCGTTGTTTCCTGTGTTTC 58.309 45.455 0.00 0.00 0.00 2.78
97 98 2.159296 GCCTTCGTTGTTTCCTGTGTTT 60.159 45.455 0.00 0.00 0.00 2.83
98 99 1.404035 GCCTTCGTTGTTTCCTGTGTT 59.596 47.619 0.00 0.00 0.00 3.32
99 100 1.021968 GCCTTCGTTGTTTCCTGTGT 58.978 50.000 0.00 0.00 0.00 3.72
100 101 0.041312 CGCCTTCGTTGTTTCCTGTG 60.041 55.000 0.00 0.00 0.00 3.66
101 102 0.179067 TCGCCTTCGTTGTTTCCTGT 60.179 50.000 0.00 0.00 36.96 4.00
102 103 0.512952 CTCGCCTTCGTTGTTTCCTG 59.487 55.000 0.00 0.00 36.96 3.86
103 104 0.602905 CCTCGCCTTCGTTGTTTCCT 60.603 55.000 0.00 0.00 36.96 3.36
104 105 1.574702 CCCTCGCCTTCGTTGTTTCC 61.575 60.000 0.00 0.00 36.96 3.13
105 106 1.574702 CCCCTCGCCTTCGTTGTTTC 61.575 60.000 0.00 0.00 36.96 2.78
106 107 1.599797 CCCCTCGCCTTCGTTGTTT 60.600 57.895 0.00 0.00 36.96 2.83
107 108 2.032071 CCCCTCGCCTTCGTTGTT 59.968 61.111 0.00 0.00 36.96 2.83
108 109 4.699522 GCCCCTCGCCTTCGTTGT 62.700 66.667 0.00 0.00 36.96 3.32
126 127 4.410400 CCCTTGCCACCGGTCTCC 62.410 72.222 2.59 0.00 0.00 3.71
155 156 4.427661 AGCAGGCACTCGCGTCTC 62.428 66.667 5.77 0.00 39.92 3.36
156 157 4.731612 CAGCAGGCACTCGCGTCT 62.732 66.667 5.77 0.00 39.92 4.18
191 192 4.373116 TCCTCGTGGGAACGCAGC 62.373 66.667 3.23 0.00 41.91 5.25
198 199 1.305046 GTCCTCCTTCCTCGTGGGA 60.305 63.158 3.23 0.00 43.41 4.37
199 200 2.359967 GGTCCTCCTTCCTCGTGGG 61.360 68.421 3.23 0.00 0.00 4.61
200 201 2.711922 CGGTCCTCCTTCCTCGTGG 61.712 68.421 0.00 0.00 0.00 4.94
201 202 1.658686 CTCGGTCCTCCTTCCTCGTG 61.659 65.000 0.00 0.00 0.00 4.35
202 203 1.378778 CTCGGTCCTCCTTCCTCGT 60.379 63.158 0.00 0.00 0.00 4.18
203 204 0.466555 ATCTCGGTCCTCCTTCCTCG 60.467 60.000 0.00 0.00 0.00 4.63
204 205 1.324383 GATCTCGGTCCTCCTTCCTC 58.676 60.000 0.00 0.00 0.00 3.71
205 206 0.631753 TGATCTCGGTCCTCCTTCCT 59.368 55.000 0.00 0.00 0.00 3.36
206 207 1.486211 TTGATCTCGGTCCTCCTTCC 58.514 55.000 0.00 0.00 0.00 3.46
207 208 3.055747 ACTTTTGATCTCGGTCCTCCTTC 60.056 47.826 0.00 0.00 0.00 3.46
208 209 2.907042 ACTTTTGATCTCGGTCCTCCTT 59.093 45.455 0.00 0.00 0.00 3.36
209 210 2.234908 CACTTTTGATCTCGGTCCTCCT 59.765 50.000 0.00 0.00 0.00 3.69
210 211 2.622436 CACTTTTGATCTCGGTCCTCC 58.378 52.381 0.00 0.00 0.00 4.30
211 212 2.233922 TCCACTTTTGATCTCGGTCCTC 59.766 50.000 0.00 0.00 0.00 3.71
212 213 2.234908 CTCCACTTTTGATCTCGGTCCT 59.765 50.000 0.00 0.00 0.00 3.85
213 214 2.622436 CTCCACTTTTGATCTCGGTCC 58.378 52.381 0.00 0.00 0.00 4.46
214 215 2.003301 GCTCCACTTTTGATCTCGGTC 58.997 52.381 0.00 0.00 0.00 4.79
215 216 1.673033 CGCTCCACTTTTGATCTCGGT 60.673 52.381 0.00 0.00 0.00 4.69
216 217 1.002366 CGCTCCACTTTTGATCTCGG 58.998 55.000 0.00 0.00 0.00 4.63
217 218 0.371645 GCGCTCCACTTTTGATCTCG 59.628 55.000 0.00 0.00 0.00 4.04
218 219 0.371645 CGCGCTCCACTTTTGATCTC 59.628 55.000 5.56 0.00 0.00 2.75
219 220 0.037326 TCGCGCTCCACTTTTGATCT 60.037 50.000 5.56 0.00 0.00 2.75
220 221 1.009829 ATCGCGCTCCACTTTTGATC 58.990 50.000 5.56 0.00 0.00 2.92
221 222 0.729116 CATCGCGCTCCACTTTTGAT 59.271 50.000 5.56 0.00 0.00 2.57
222 223 1.911293 GCATCGCGCTCCACTTTTGA 61.911 55.000 5.56 0.00 37.77 2.69
223 224 1.512734 GCATCGCGCTCCACTTTTG 60.513 57.895 5.56 0.00 37.77 2.44
224 225 1.308069 ATGCATCGCGCTCCACTTTT 61.308 50.000 5.56 0.00 43.06 2.27
225 226 1.308069 AATGCATCGCGCTCCACTTT 61.308 50.000 5.56 0.00 43.06 2.66
226 227 1.308069 AAATGCATCGCGCTCCACTT 61.308 50.000 5.56 0.00 43.06 3.16
227 228 1.308069 AAAATGCATCGCGCTCCACT 61.308 50.000 5.56 0.00 43.06 4.00
228 229 0.456653 AAAAATGCATCGCGCTCCAC 60.457 50.000 5.56 0.00 43.06 4.02
229 230 1.882311 AAAAATGCATCGCGCTCCA 59.118 47.368 5.56 0.00 43.06 3.86
230 231 4.792106 AAAAATGCATCGCGCTCC 57.208 50.000 5.56 0.00 43.06 4.70
246 247 2.813754 CTGGATCTCGCAACAGGAAAAA 59.186 45.455 0.00 0.00 0.00 1.94
247 248 2.038426 TCTGGATCTCGCAACAGGAAAA 59.962 45.455 0.00 0.00 0.00 2.29
248 249 1.623311 TCTGGATCTCGCAACAGGAAA 59.377 47.619 0.00 0.00 0.00 3.13
249 250 1.266178 TCTGGATCTCGCAACAGGAA 58.734 50.000 0.00 0.00 0.00 3.36
250 251 1.410517 GATCTGGATCTCGCAACAGGA 59.589 52.381 3.58 0.00 35.04 3.86
251 252 1.863267 GATCTGGATCTCGCAACAGG 58.137 55.000 3.58 0.00 35.04 4.00
252 253 1.066152 TCGATCTGGATCTCGCAACAG 59.934 52.381 8.65 0.00 35.72 3.16
253 254 1.102978 TCGATCTGGATCTCGCAACA 58.897 50.000 8.65 0.00 35.72 3.33
254 255 1.855360 GTTCGATCTGGATCTCGCAAC 59.145 52.381 8.65 0.00 35.72 4.17
255 256 1.533965 CGTTCGATCTGGATCTCGCAA 60.534 52.381 8.65 0.00 35.72 4.85
256 257 0.029433 CGTTCGATCTGGATCTCGCA 59.971 55.000 8.65 0.00 35.72 5.10
257 258 0.661780 CCGTTCGATCTGGATCTCGC 60.662 60.000 8.65 0.00 35.72 5.03
258 259 0.039978 CCCGTTCGATCTGGATCTCG 60.040 60.000 8.65 9.58 35.72 4.04
259 260 1.001158 GACCCGTTCGATCTGGATCTC 60.001 57.143 10.53 0.00 35.72 2.75
260 261 1.033574 GACCCGTTCGATCTGGATCT 58.966 55.000 10.53 0.00 35.72 2.75
261 262 0.744874 TGACCCGTTCGATCTGGATC 59.255 55.000 10.53 2.15 34.56 3.36
262 263 0.460311 GTGACCCGTTCGATCTGGAT 59.540 55.000 10.53 0.00 0.00 3.41
263 264 0.896479 TGTGACCCGTTCGATCTGGA 60.896 55.000 10.53 0.00 0.00 3.86
264 265 0.175760 ATGTGACCCGTTCGATCTGG 59.824 55.000 2.68 2.68 0.00 3.86
265 266 2.863401 TATGTGACCCGTTCGATCTG 57.137 50.000 0.00 0.00 0.00 2.90
266 267 2.693591 ACATATGTGACCCGTTCGATCT 59.306 45.455 7.78 0.00 0.00 2.75
267 268 3.093717 ACATATGTGACCCGTTCGATC 57.906 47.619 7.78 0.00 0.00 3.69
268 269 3.118920 TCAACATATGTGACCCGTTCGAT 60.119 43.478 9.63 0.00 0.00 3.59
269 270 2.231721 TCAACATATGTGACCCGTTCGA 59.768 45.455 9.63 0.00 0.00 3.71
270 271 2.612604 TCAACATATGTGACCCGTTCG 58.387 47.619 9.63 0.00 0.00 3.95
271 272 4.260212 CGATTCAACATATGTGACCCGTTC 60.260 45.833 9.63 0.46 0.00 3.95
272 273 3.621268 CGATTCAACATATGTGACCCGTT 59.379 43.478 9.63 0.00 0.00 4.44
273 274 3.194861 CGATTCAACATATGTGACCCGT 58.805 45.455 9.63 0.00 0.00 5.28
274 275 2.543848 CCGATTCAACATATGTGACCCG 59.456 50.000 9.63 12.94 0.00 5.28
275 276 3.560068 GTCCGATTCAACATATGTGACCC 59.440 47.826 9.63 3.40 0.00 4.46
276 277 3.245284 CGTCCGATTCAACATATGTGACC 59.755 47.826 9.63 3.70 0.00 4.02
277 278 3.302480 GCGTCCGATTCAACATATGTGAC 60.302 47.826 9.63 9.35 0.00 3.67
278 279 2.863740 GCGTCCGATTCAACATATGTGA 59.136 45.455 9.63 6.51 0.00 3.58
279 280 2.866156 AGCGTCCGATTCAACATATGTG 59.134 45.455 9.63 4.13 0.00 3.21
280 281 3.123804 GAGCGTCCGATTCAACATATGT 58.876 45.455 1.41 1.41 0.00 2.29
281 282 2.153817 CGAGCGTCCGATTCAACATATG 59.846 50.000 0.00 0.00 0.00 1.78
282 283 2.394708 CGAGCGTCCGATTCAACATAT 58.605 47.619 0.00 0.00 0.00 1.78
283 284 1.835121 CGAGCGTCCGATTCAACATA 58.165 50.000 0.00 0.00 0.00 2.29
284 285 1.421410 GCGAGCGTCCGATTCAACAT 61.421 55.000 2.92 0.00 0.00 2.71
285 286 2.092291 GCGAGCGTCCGATTCAACA 61.092 57.895 2.92 0.00 0.00 3.33
286 287 2.695646 GCGAGCGTCCGATTCAAC 59.304 61.111 2.92 0.00 0.00 3.18
287 288 2.878991 CGCGAGCGTCCGATTCAA 60.879 61.111 0.00 0.00 34.35 2.69
299 300 2.152699 CGGCCTATTATCGCGCGAG 61.153 63.158 36.99 23.11 0.00 5.03
300 301 2.126618 CGGCCTATTATCGCGCGA 60.127 61.111 36.65 36.65 0.00 5.87
301 302 1.731613 TTCGGCCTATTATCGCGCG 60.732 57.895 26.76 26.76 0.00 6.86
302 303 1.779683 GTTCGGCCTATTATCGCGC 59.220 57.895 0.00 0.00 0.00 6.86
303 304 1.342082 CCGTTCGGCCTATTATCGCG 61.342 60.000 0.00 0.00 0.00 5.87
304 305 1.012486 CCCGTTCGGCCTATTATCGC 61.012 60.000 0.00 0.00 0.00 4.58
305 306 0.316204 ACCCGTTCGGCCTATTATCG 59.684 55.000 0.00 0.00 33.26 2.92
306 307 1.342174 TGACCCGTTCGGCCTATTATC 59.658 52.381 0.00 0.00 33.26 1.75
307 308 1.416243 TGACCCGTTCGGCCTATTAT 58.584 50.000 0.00 0.00 33.26 1.28
308 309 1.193323 TTGACCCGTTCGGCCTATTA 58.807 50.000 0.00 0.00 33.26 0.98
309 310 0.325602 TTTGACCCGTTCGGCCTATT 59.674 50.000 0.00 0.00 33.26 1.73
310 311 0.544697 ATTTGACCCGTTCGGCCTAT 59.455 50.000 0.00 0.00 33.26 2.57
311 312 1.137479 CTATTTGACCCGTTCGGCCTA 59.863 52.381 0.00 0.00 33.26 3.93
312 313 0.107848 CTATTTGACCCGTTCGGCCT 60.108 55.000 0.00 0.00 33.26 5.19
313 314 0.392060 ACTATTTGACCCGTTCGGCC 60.392 55.000 5.66 0.00 33.26 6.13
314 315 1.929169 GTACTATTTGACCCGTTCGGC 59.071 52.381 5.66 0.00 33.26 5.54
315 316 3.442100 GAGTACTATTTGACCCGTTCGG 58.558 50.000 0.00 4.08 37.81 4.30
316 317 3.442100 GGAGTACTATTTGACCCGTTCG 58.558 50.000 0.00 0.00 0.00 3.95
317 318 3.450096 AGGGAGTACTATTTGACCCGTTC 59.550 47.826 8.93 0.00 41.81 3.95
318 319 3.447950 AGGGAGTACTATTTGACCCGTT 58.552 45.455 8.93 0.00 41.81 4.44
319 320 3.029570 GAGGGAGTACTATTTGACCCGT 58.970 50.000 8.93 0.24 41.81 5.28
320 321 2.364647 GGAGGGAGTACTATTTGACCCG 59.635 54.545 8.93 0.00 41.81 5.28
321 322 2.364647 CGGAGGGAGTACTATTTGACCC 59.635 54.545 6.92 6.92 37.79 4.46
322 323 2.223994 GCGGAGGGAGTACTATTTGACC 60.224 54.545 0.00 0.00 0.00 4.02
323 324 2.694109 AGCGGAGGGAGTACTATTTGAC 59.306 50.000 0.00 0.00 0.00 3.18
324 325 2.957006 GAGCGGAGGGAGTACTATTTGA 59.043 50.000 0.00 0.00 0.00 2.69
325 326 2.036089 GGAGCGGAGGGAGTACTATTTG 59.964 54.545 0.00 0.00 0.00 2.32
326 327 2.317973 GGAGCGGAGGGAGTACTATTT 58.682 52.381 0.00 0.00 0.00 1.40
327 328 1.217183 TGGAGCGGAGGGAGTACTATT 59.783 52.381 0.00 0.00 0.00 1.73
328 329 0.851469 TGGAGCGGAGGGAGTACTAT 59.149 55.000 0.00 0.00 0.00 2.12
329 330 0.851469 ATGGAGCGGAGGGAGTACTA 59.149 55.000 0.00 0.00 0.00 1.82
330 331 0.851469 TATGGAGCGGAGGGAGTACT 59.149 55.000 0.00 0.00 0.00 2.73
331 332 1.700955 TTATGGAGCGGAGGGAGTAC 58.299 55.000 0.00 0.00 0.00 2.73
332 333 2.248248 CATTATGGAGCGGAGGGAGTA 58.752 52.381 0.00 0.00 0.00 2.59
333 334 1.051812 CATTATGGAGCGGAGGGAGT 58.948 55.000 0.00 0.00 0.00 3.85
334 335 1.051812 ACATTATGGAGCGGAGGGAG 58.948 55.000 0.00 0.00 0.00 4.30
335 336 2.248248 CTACATTATGGAGCGGAGGGA 58.752 52.381 0.00 0.00 0.00 4.20
336 337 1.971357 ACTACATTATGGAGCGGAGGG 59.029 52.381 4.02 0.00 29.04 4.30
337 338 2.868044 GCACTACATTATGGAGCGGAGG 60.868 54.545 4.02 0.00 29.04 4.30
338 339 2.408050 GCACTACATTATGGAGCGGAG 58.592 52.381 4.02 0.00 29.04 4.63
339 340 1.070134 GGCACTACATTATGGAGCGGA 59.930 52.381 4.02 0.00 29.04 5.54
340 341 1.070758 AGGCACTACATTATGGAGCGG 59.929 52.381 4.02 0.00 36.02 5.52
341 342 2.533266 AGGCACTACATTATGGAGCG 57.467 50.000 4.02 0.00 36.02 5.03
354 355 7.039784 TGACTTTTGCAAAAATCTATAGGCACT 60.040 33.333 27.69 1.15 46.37 4.40
355 356 7.090173 TGACTTTTGCAAAAATCTATAGGCAC 58.910 34.615 27.69 12.10 0.00 5.01
356 357 7.225784 TGACTTTTGCAAAAATCTATAGGCA 57.774 32.000 27.69 18.92 0.00 4.75
357 358 8.435430 GTTTGACTTTTGCAAAAATCTATAGGC 58.565 33.333 27.69 16.81 37.03 3.93
358 359 9.474920 TGTTTGACTTTTGCAAAAATCTATAGG 57.525 29.630 27.69 15.71 37.03 2.57
360 361 9.809096 TGTGTTTGACTTTTGCAAAAATCTATA 57.191 25.926 27.69 14.88 37.03 1.31
361 362 8.715191 TGTGTTTGACTTTTGCAAAAATCTAT 57.285 26.923 27.69 11.91 37.03 1.98
362 363 8.539770 TTGTGTTTGACTTTTGCAAAAATCTA 57.460 26.923 27.69 20.46 37.03 1.98
363 364 7.432350 TTGTGTTTGACTTTTGCAAAAATCT 57.568 28.000 27.69 13.68 37.03 2.40
364 365 7.802720 AGTTTGTGTTTGACTTTTGCAAAAATC 59.197 29.630 22.90 22.90 37.03 2.17
365 366 7.647228 AGTTTGTGTTTGACTTTTGCAAAAAT 58.353 26.923 23.92 15.90 37.03 1.82
366 367 7.020914 AGTTTGTGTTTGACTTTTGCAAAAA 57.979 28.000 23.92 8.29 37.03 1.94
367 368 6.610741 AGTTTGTGTTTGACTTTTGCAAAA 57.389 29.167 22.61 22.61 37.03 2.44
368 369 6.258727 TCAAGTTTGTGTTTGACTTTTGCAAA 59.741 30.769 8.05 8.05 31.63 3.68
369 370 5.755375 TCAAGTTTGTGTTTGACTTTTGCAA 59.245 32.000 0.00 0.00 31.63 4.08
370 371 5.292765 TCAAGTTTGTGTTTGACTTTTGCA 58.707 33.333 0.00 0.00 31.63 4.08
371 372 5.837586 TCAAGTTTGTGTTTGACTTTTGC 57.162 34.783 0.00 0.00 31.63 3.68
372 373 7.579589 TGATCAAGTTTGTGTTTGACTTTTG 57.420 32.000 0.00 0.00 36.26 2.44
461 462 9.693739 ACCAACCATGTACATTCTGAAAATATA 57.306 29.630 5.37 0.00 0.00 0.86
462 463 8.593945 ACCAACCATGTACATTCTGAAAATAT 57.406 30.769 5.37 0.00 0.00 1.28
463 464 9.693739 ATACCAACCATGTACATTCTGAAAATA 57.306 29.630 5.37 0.00 0.00 1.40
464 465 6.916360 ACCAACCATGTACATTCTGAAAAT 57.084 33.333 5.37 0.00 0.00 1.82
465 466 8.303156 CAATACCAACCATGTACATTCTGAAAA 58.697 33.333 5.37 0.00 0.00 2.29
466 467 7.450014 ACAATACCAACCATGTACATTCTGAAA 59.550 33.333 5.37 0.00 0.00 2.69
467 468 6.945435 ACAATACCAACCATGTACATTCTGAA 59.055 34.615 5.37 0.00 0.00 3.02
468 469 6.480763 ACAATACCAACCATGTACATTCTGA 58.519 36.000 5.37 0.00 0.00 3.27
469 470 6.757897 ACAATACCAACCATGTACATTCTG 57.242 37.500 5.37 3.77 0.00 3.02
470 471 7.857456 TCTACAATACCAACCATGTACATTCT 58.143 34.615 5.37 0.00 0.00 2.40
471 472 8.559536 CATCTACAATACCAACCATGTACATTC 58.440 37.037 5.37 0.00 0.00 2.67
472 473 8.052748 ACATCTACAATACCAACCATGTACATT 58.947 33.333 5.37 0.00 0.00 2.71
473 474 7.573710 ACATCTACAATACCAACCATGTACAT 58.426 34.615 1.41 1.41 0.00 2.29
474 475 6.953101 ACATCTACAATACCAACCATGTACA 58.047 36.000 0.00 0.00 0.00 2.90
475 476 8.418662 TCTACATCTACAATACCAACCATGTAC 58.581 37.037 0.00 0.00 0.00 2.90
476 477 8.418662 GTCTACATCTACAATACCAACCATGTA 58.581 37.037 0.00 0.00 0.00 2.29
477 478 7.093068 TGTCTACATCTACAATACCAACCATGT 60.093 37.037 0.00 0.00 0.00 3.21
478 479 7.272244 TGTCTACATCTACAATACCAACCATG 58.728 38.462 0.00 0.00 0.00 3.66
479 480 7.125811 ACTGTCTACATCTACAATACCAACCAT 59.874 37.037 0.00 0.00 0.00 3.55
480 481 6.439375 ACTGTCTACATCTACAATACCAACCA 59.561 38.462 0.00 0.00 0.00 3.67
481 482 6.875076 ACTGTCTACATCTACAATACCAACC 58.125 40.000 0.00 0.00 0.00 3.77
482 483 8.773404 AAACTGTCTACATCTACAATACCAAC 57.227 34.615 0.00 0.00 0.00 3.77
483 484 9.431887 GAAAACTGTCTACATCTACAATACCAA 57.568 33.333 0.00 0.00 0.00 3.67
484 485 8.812972 AGAAAACTGTCTACATCTACAATACCA 58.187 33.333 0.00 0.00 0.00 3.25
485 486 9.303537 GAGAAAACTGTCTACATCTACAATACC 57.696 37.037 0.00 0.00 0.00 2.73
515 516 9.260002 CAAACTTTGCTAACTTTGACCAAATAT 57.740 29.630 7.03 0.00 0.00 1.28
516 517 8.470805 TCAAACTTTGCTAACTTTGACCAAATA 58.529 29.630 10.10 0.00 29.66 1.40
517 518 7.277760 GTCAAACTTTGCTAACTTTGACCAAAT 59.722 33.333 22.79 0.00 43.35 2.32
518 519 6.588373 GTCAAACTTTGCTAACTTTGACCAAA 59.412 34.615 22.79 0.00 43.35 3.28
519 520 6.096695 GTCAAACTTTGCTAACTTTGACCAA 58.903 36.000 22.79 3.19 43.35 3.67
520 521 5.646606 GTCAAACTTTGCTAACTTTGACCA 58.353 37.500 22.79 3.44 43.35 4.02
521 522 6.811665 AAAGTCAAACTTTGCTAACTTTGACC 59.188 34.615 26.22 16.53 45.83 4.02
522 523 7.812309 AAAGTCAAACTTTGCTAACTTTGAC 57.188 32.000 24.38 24.38 45.83 3.18
550 551 9.030452 TCCACAATGTAGTGCCTATAAATTTTT 57.970 29.630 0.00 0.00 38.18 1.94
551 552 8.588290 TCCACAATGTAGTGCCTATAAATTTT 57.412 30.769 0.00 0.00 38.18 1.82
552 553 8.588290 TTCCACAATGTAGTGCCTATAAATTT 57.412 30.769 0.00 0.00 38.18 1.82
553 554 8.766994 ATTCCACAATGTAGTGCCTATAAATT 57.233 30.769 0.00 0.00 38.18 1.82
554 555 9.507329 CTATTCCACAATGTAGTGCCTATAAAT 57.493 33.333 0.00 0.00 38.18 1.40
555 556 8.710239 TCTATTCCACAATGTAGTGCCTATAAA 58.290 33.333 0.00 0.00 38.18 1.40
556 557 8.257602 TCTATTCCACAATGTAGTGCCTATAA 57.742 34.615 0.00 0.00 38.18 0.98
557 558 7.039011 CCTCTATTCCACAATGTAGTGCCTATA 60.039 40.741 0.00 0.00 38.18 1.31
558 559 6.239714 CCTCTATTCCACAATGTAGTGCCTAT 60.240 42.308 0.00 0.00 38.18 2.57
559 560 5.070446 CCTCTATTCCACAATGTAGTGCCTA 59.930 44.000 0.00 0.00 38.18 3.93
560 561 4.141620 CCTCTATTCCACAATGTAGTGCCT 60.142 45.833 0.00 0.00 38.18 4.75
561 562 4.130118 CCTCTATTCCACAATGTAGTGCC 58.870 47.826 0.00 0.00 38.18 5.01
562 563 4.130118 CCCTCTATTCCACAATGTAGTGC 58.870 47.826 0.00 0.00 38.18 4.40
563 564 5.129485 ACTCCCTCTATTCCACAATGTAGTG 59.871 44.000 0.00 0.00 39.21 2.74
564 565 5.129485 CACTCCCTCTATTCCACAATGTAGT 59.871 44.000 0.00 0.00 0.00 2.73
565 566 5.129485 ACACTCCCTCTATTCCACAATGTAG 59.871 44.000 0.00 0.00 0.00 2.74
566 567 5.030147 ACACTCCCTCTATTCCACAATGTA 58.970 41.667 0.00 0.00 0.00 2.29
567 568 3.846588 ACACTCCCTCTATTCCACAATGT 59.153 43.478 0.00 0.00 0.00 2.71
568 569 4.494091 ACACTCCCTCTATTCCACAATG 57.506 45.455 0.00 0.00 0.00 2.82
569 570 5.726793 ACTAACACTCCCTCTATTCCACAAT 59.273 40.000 0.00 0.00 0.00 2.71
570 571 5.091552 ACTAACACTCCCTCTATTCCACAA 58.908 41.667 0.00 0.00 0.00 3.33
571 572 4.684724 ACTAACACTCCCTCTATTCCACA 58.315 43.478 0.00 0.00 0.00 4.17
572 573 5.678955 AACTAACACTCCCTCTATTCCAC 57.321 43.478 0.00 0.00 0.00 4.02
573 574 7.801893 TTTAACTAACACTCCCTCTATTCCA 57.198 36.000 0.00 0.00 0.00 3.53
574 575 7.932491 GGATTTAACTAACACTCCCTCTATTCC 59.068 40.741 0.00 0.00 0.00 3.01
575 576 8.706521 AGGATTTAACTAACACTCCCTCTATTC 58.293 37.037 0.00 0.00 0.00 1.75
576 577 8.625467 AGGATTTAACTAACACTCCCTCTATT 57.375 34.615 0.00 0.00 0.00 1.73
577 578 9.725206 TTAGGATTTAACTAACACTCCCTCTAT 57.275 33.333 0.00 0.00 0.00 1.98
578 579 8.975295 GTTAGGATTTAACTAACACTCCCTCTA 58.025 37.037 9.69 0.00 45.93 2.43
579 580 7.849160 GTTAGGATTTAACTAACACTCCCTCT 58.151 38.462 9.69 0.00 45.93 3.69
588 589 9.924650 TGTGAGAAGAGTTAGGATTTAACTAAC 57.075 33.333 7.13 7.13 46.63 2.34
605 606 6.226787 GTGAAAGGAAGAGAATGTGAGAAGA 58.773 40.000 0.00 0.00 0.00 2.87
629 630 6.198029 TGAATTTGTTGCTTCACAATTACACG 59.802 34.615 0.00 0.00 41.27 4.49
633 634 7.939782 TCTCTGAATTTGTTGCTTCACAATTA 58.060 30.769 0.00 0.00 41.27 1.40
763 769 1.800805 AGCACAGTGGAGAATGTTCG 58.199 50.000 1.84 0.00 0.00 3.95
815 821 4.500603 GCTAGCTAGCTAACGGTAATGA 57.499 45.455 33.71 1.14 45.62 2.57
925 932 2.550208 GGCTAGCTACCTTGTGTGTGTT 60.550 50.000 15.72 0.00 0.00 3.32
1221 1228 1.373748 GCGGAAGTGGTGCTCGTAA 60.374 57.895 0.00 0.00 0.00 3.18
1493 1503 0.574454 GATCGATCACTGCTTGTCGC 59.426 55.000 20.52 0.00 39.77 5.19
1529 1543 1.005867 GGCACCAGCACAAACCATG 60.006 57.895 0.00 0.00 44.61 3.66
1556 1573 2.962834 CGTATAGTCGTATCACGCACAC 59.037 50.000 0.00 0.00 42.21 3.82
1561 1578 4.961433 TCACTCGTATAGTCGTATCACG 57.039 45.455 0.00 0.00 44.19 4.35
1604 1627 1.736645 CGCACCACCTACCTGTTCG 60.737 63.158 0.00 0.00 0.00 3.95
1607 1630 1.533273 AGACGCACCACCTACCTGT 60.533 57.895 0.00 0.00 0.00 4.00
1608 1631 1.215647 GAGACGCACCACCTACCTG 59.784 63.158 0.00 0.00 0.00 4.00
1610 1633 2.181021 CGAGACGCACCACCTACC 59.819 66.667 0.00 0.00 0.00 3.18
1636 1661 9.522804 AACTCGCAAAATAAAAAGATACAAACA 57.477 25.926 0.00 0.00 0.00 2.83
1640 1665 7.865385 AGCAAACTCGCAAAATAAAAAGATACA 59.135 29.630 0.00 0.00 0.00 2.29
1641 1666 8.227731 AGCAAACTCGCAAAATAAAAAGATAC 57.772 30.769 0.00 0.00 0.00 2.24
1642 1667 8.810652 AAGCAAACTCGCAAAATAAAAAGATA 57.189 26.923 0.00 0.00 0.00 1.98
1643 1668 7.095649 GGAAGCAAACTCGCAAAATAAAAAGAT 60.096 33.333 0.00 0.00 0.00 2.40
1644 1669 6.200097 GGAAGCAAACTCGCAAAATAAAAAGA 59.800 34.615 0.00 0.00 0.00 2.52
1645 1670 6.019156 TGGAAGCAAACTCGCAAAATAAAAAG 60.019 34.615 0.00 0.00 0.00 2.27
1695 1720 6.040247 ACTTCATCGATTATTCACGTAGCAA 58.960 36.000 0.00 0.00 0.00 3.91
1772 1809 3.276857 CGGTAGCTCAACCACTCTACTA 58.723 50.000 6.48 0.00 39.71 1.82
1847 1884 4.329256 GTGCTTCCCTTCATTACGAGTAAC 59.671 45.833 0.00 0.00 0.00 2.50
1881 1918 5.393962 GCAACATAACTTGCTAGTTGAAGG 58.606 41.667 21.56 8.56 44.22 3.46
1901 1939 0.816018 TTCCGAAAGCGACTTGGCAA 60.816 50.000 0.00 0.00 40.82 4.52
2033 2071 6.128391 TGCACGAGATTTAAATGTGAGGTAAC 60.128 38.462 17.02 3.62 32.39 2.50
2034 2072 5.935206 TGCACGAGATTTAAATGTGAGGTAA 59.065 36.000 17.02 0.00 32.39 2.85
2035 2073 5.483811 TGCACGAGATTTAAATGTGAGGTA 58.516 37.500 17.02 0.00 32.39 3.08
2036 2074 4.323417 TGCACGAGATTTAAATGTGAGGT 58.677 39.130 17.02 4.95 32.39 3.85
2037 2075 4.944962 TGCACGAGATTTAAATGTGAGG 57.055 40.909 17.02 4.44 32.39 3.86
2049 2087 3.187227 GTCAATCACAAGTTGCACGAGAT 59.813 43.478 1.81 0.00 0.00 2.75
2064 2134 3.187022 CACTGCAGAAACGATGTCAATCA 59.813 43.478 23.35 0.00 32.61 2.57
2084 2154 3.764049 GACCACGACGAAGCGCAC 61.764 66.667 11.47 1.68 33.86 5.34
2120 2190 4.578105 ACCAGCTGACAGAGAAAAGAAAAG 59.422 41.667 17.39 0.00 0.00 2.27
2202 2272 2.573462 GGGCCAGCATATTCAGGAGATA 59.427 50.000 4.39 0.00 0.00 1.98
2205 2275 0.769873 AGGGCCAGCATATTCAGGAG 59.230 55.000 6.18 0.00 0.00 3.69
2226 2296 1.598882 GTATAGCTTGAAGCAGGCCC 58.401 55.000 20.45 0.00 45.56 5.80
2248 2318 7.783042 TCTCTAAAAAGTAGCTTAGTCCCATC 58.217 38.462 0.00 0.00 0.00 3.51
2317 2387 8.638629 ACTAATATGACCGCTATAGAGAGTTT 57.361 34.615 3.21 0.00 0.00 2.66
2318 2388 8.638629 AACTAATATGACCGCTATAGAGAGTT 57.361 34.615 3.21 0.86 0.00 3.01
2331 2401 6.890268 GGATCCCCCATAAAACTAATATGACC 59.110 42.308 0.00 0.00 33.49 4.02
2364 2467 4.794439 CACATCCGACCGCTCGCA 62.794 66.667 0.00 0.00 38.70 5.10
2394 2497 8.396272 TGCAAAGAAGAGAAATTAGTTTAGCT 57.604 30.769 0.00 0.00 0.00 3.32
2407 2510 6.949352 AAGAGAATTGTTGCAAAGAAGAGA 57.051 33.333 0.00 0.00 30.39 3.10
2424 2527 5.828299 ACAAATGTTTCCGACAAAGAGAA 57.172 34.783 0.00 0.00 42.62 2.87
2428 2531 6.491394 TCTGTTACAAATGTTTCCGACAAAG 58.509 36.000 0.00 0.00 42.62 2.77
2431 2534 5.361427 TCTCTGTTACAAATGTTTCCGACA 58.639 37.500 0.00 0.00 43.71 4.35
2432 2535 5.917541 TCTCTGTTACAAATGTTTCCGAC 57.082 39.130 0.00 0.00 0.00 4.79
2434 2537 7.017645 CAGAATCTCTGTTACAAATGTTTCCG 58.982 38.462 0.00 0.00 39.58 4.30
2476 2580 5.726980 AAATCCTGCAACACAACATATGT 57.273 34.783 1.41 1.41 45.34 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.